Pregenerated sensors for SOX14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053747Ensembl transcript IDs: ENSMUST00000054819.10, ENSMUST00000183065.2
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCACCTCCCCACACACAGGAAGAGCAAATGGTGCCTAGCTGTGTCTaGCGGCACAGCACCAAGACTCAGCTCTTTTTCTTCAGTGGGAAA | + |
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Preference number: 1 (lower is better) Translates to: SPPHTQEEQMVPSCV*RHSTKTQLFFFSGK Trigger: TTTCCCACTGAAGAAAAAGAGCTGAGTCTTGGTGCTGTGCCGTCAGACACAGCTAGGCACCATTTGCTCTTCCTGTGTGTGGGGAGGTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGGATCTGGGAGTTCCGAGTCCAAAGCCTATCCGCGGACAGTGAGGGGGACGGAGAGAGGCAGAGTCTaGGGTGGGCAAGGGGCAGCG | + |
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Preference number: 2 (lower is better) Translates to: PGSGSSESKAYPRTVRGTERGRV*GGQGAA Trigger: CGCTGCCCCTTGCCCACCCCAGACTCTGCCTCTCTC...CGTCCCCCTCACTGTCCGCGGATAGGCTTTGGACTCGGAACTCCCAGATCCTGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| 3UTR-3UTR GCA 90 bp | CCAGGATCTGGGAGTTCCGAGTCCAAAGCCTATCCGCGGACAGTGAGGGGGACGAGCTTTCTAAATGTTTaGAAATTTCTGGCACCAGTC | + |
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Preference number: 2 (lower is better) Translates to: PGSGSSESKAYPRTVRGTSFLNV*KFLAPV Trigger: GACTGGTGCCAGAAATTTGCAAACATTTAGAAAGCT...CGTCCCCCTCACTGTCCGCGGATAGGCTTTGGACTCGGAACTCCCAGATCCTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| 3UTR-3UTR GCA 90 bp | GTGTCTGACGGCACAGCACCAAGACTCAGCTCTTTTTCTTCAGTGGGAAAGGAAGGTACAGTCGAGACTTaGTTTGGGAGAGTCGGGAGA | + |
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Preference number: 2 (lower is better) Translates to: VSDGTAPRLSSFSSVGKEGTVET*FGRVGR Trigger: TCTCCCGACTCTCCCAAAGCAAGTCTCGACTGTACC...TTCCTTTCCCACTGAAGAAAAAGAGCTGAGTCTTGGTGCTGTGCCGTCAGACAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| 3UTR-3UTR CCA 90 bp | GTACAGTCGAGACTTGCTTTGGGAGAGTCGGGAGAGGGGAAGAAGATGTGTAGCATGTTTGCAAATTTCTaGCACCAGTCTGTGCCTTGG | + |
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Preference number: 2 (lower is better) Translates to: VQSRLALGESGEGKKMCSMFANF*HQSVPW Trigger: CCAAGGCACAGACTGGTGCCAGAAATTTGCAAACAT...GCTACACATCTTCTTCCCCTCTCCCGACTCTCCCAAAGCAAGTCTCGACTGTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| 3UTR-3UTR TCA 90 bp | TATATATATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCGCCTTGGGTCCAGGATaGTGGCCCTTCCCTTCCCCC | + |
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Preference number: 2 (lower is better) Translates to: YIYTHILDIIPGSGSSESALGPG*WPFPSP Trigger: GGGGGAAGGGAAGGGCCATCATCCTGGACCCAAGGC...GGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATATATATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| 3UTR-3UTR GCA 90 bp | TATATATATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCAGCTTTCTAAATGTTTaGAAATTTCTGGCACCAGTC | + |
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Preference number: 2 (lower is better) Translates to: YIYTHILDIIPGSGSSESSFLNV*KFLAPV Trigger: GACTGGTGCCAGAAATTTGCAAACATTTAGAAAGCT...GGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATATATATA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| 3UTR-3UTR CAA 90 bp | CCAGGATCTGGGAGTTCCGAGTCCAAAGCCTATCCGCGGACAGTGAGGGGGACGCAGTCGAGACTTGCTTaGGGAGAGTCGGGAGAGGGG | + |
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Preference number: 3 (lower is better) Translates to: PGSGSSESKAYPRTVRGTQSRLA*GESGEG Trigger: CCCCTCTCCCGACTCTCCCAAAGCAAGTCTCGACTG...CGTCCCCCTCACTGTCCGCGGATAGGCTTTGGACTCGGAACTCCCAGATCCTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| 3UTR-3UTR CAA 90 bp | CCAGGATCTGGGAGTTCCGAGTCCAAAGCCTATCCGCGGACAGTGAGGGGGACGGGGTACAGTCGAGACTaGCTTTGGGAGAGTCGGGAG | + |
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Preference number: 3 (lower is better) Translates to: PGSGSSESKAYPRTVRGTGYSRD*LWESRE Trigger: CTCCCGACTCTCCCAAAGCAAGTCTCGACTGTACCC...CGTCCCCCTCACTGTCCGCGGATAGGCTTTGGACTCGGAACTCCCAGATCCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| 3UTR-3UTR CAA 90 bp | ATCTGGGAGTTCCGAGTCCAAAGCCTATCCGCGGACAGTGAGGGGGACGTAAATCAGTCGAGACTTGCTTaGGGAGAGTCGGGAGAGGGG | + |
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Preference number: 3 (lower is better) Translates to: IWEFRVQSLSADSEGDVNQSRLA*GESGEG Trigger: CCCCTCTCCCGACTCTCCCAAAGCAAGTCTCGACTG...ATTTACGTCCCCCTCACTGTCCGCGGATAGGCTTTGGACTCGGAACTCCCAGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| 3UTR GCA 72 bp | AGGCCTGACCCAGAGGCATCTGCGGGCCAGACTAGGTaGAAAGGAAAGGATTCAGATCTCTGCTTCCACGCT | + |
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Preference number: 3 (lower is better) Translates to: RPDPEASAGQTR*KGKDSDLCFHA Trigger: AGCGTGGAAGCAGAGATCTGAATCCTTTCCTTTGCACCTAGTCTGGCCCGCAGATGCCTCTGGGTCAGGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| 3UTR GCA 72 bp | GGCCAGACTAGGTGCAAAGGAAAGGATTCAGATCTCTaGTTCCACGCTACCCATCAGGTCCGGGCCAAGCTT | + |
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Preference number: 3 (lower is better) Translates to: GQTRCKGKDSDL*FHATHQVRAKL Trigger: AAGCTTGGCCCGGACCTGATGGGTAGCGTGGAAGCAGAGATCTGAATCCTTTCCTTTGCACCTAGTCTGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| 3UTR TCA 72 bp | CACACACAGGAAGAGCAAATGGTGCCTAGCTGTGTCTaGCGGCACAGCACCAAGACTCAGCTCTTTTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: HTQEEQMVPSCV*RHSTKTQLFFF Trigger: GAAGAAAAAGAGCTGAGTCTTGGTGCTGTGCCGTCAGACACAGCTAGGCACCATTTGCTCTTCCTGTGTGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| 3UTR GCA 72 bp | CTTTCTAAATGTTTGCAAATTTCTGGCACCAGTCTGTaGCTTGGGTCCAGGATGATGGCCCTTCCCTTCCCC | + |
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Preference number: 3 (lower is better) Translates to: LSKCLQISGTSL*LGSRMMALPFP Trigger: GGGGAAGGGAAGGGCCATCATCCTGGACCCAAGGCACAGACTGGTGCCAGAAATTTGCAAACATTTAGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CCA 90 bp | TGGGCAAGGGGCAGCGGCAGGCCTGACCCAGAGGCATCTGCGGGCCAGACTAGGAGGGCAGCGCGCTGGTaGCCAACGTGTGGGGCACTT | + |
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Preference number: 4 (lower is better) Translates to: WARGSGRPDPEASAGQTRRAARW*PTCGAL Trigger: AAGTGCCCCACACGTTGGCCACCAGCGCGCTGCCCT...CCTAGTCTGGCCCGCAGATGCCTCTGGGTCAGGCCTGCCGCTGCCCCTTGCCCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CCA 90 bp | AGGGGCAGCGGCAGGCCTGACCCAGAGGCATCTGCGGGCCAGACTAGGTGCAAACGTAGCCCGGGTTGGTaGGGGACGGGTGCGTGTGCG | + |
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Preference number: 4 (lower is better) Translates to: RGSGRPDPEASAGQTRCKRSPGW*GTGACA Trigger: CGCACACGCACCCGTCCCCCACCAACCCGGGCTACG...TTTGCACCTAGTCTGGCCCGCAGATGCCTCTGGGTCAGGCCTGCCGCTGCCCCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CCA 90 bp | AGGGGCAGCGGCAGGCCTGACCCAGAGGCATCTGCGGGCCAGACTAGGTGCAAACCACGTAGCCCGGGTTaGTGGGGGACGGGTGCGTGT | + |
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Preference number: 4 (lower is better) Translates to: RGSGRPDPEASAGQTRCKPRSPG*WGTGAC Trigger: ACACGCACCCGTCCCCCACCAACCCGGGCTACGTGG...TTTGCACCTAGTCTGGCCCGCAGATGCCTCTGGGTCAGGCCTGCCGCTGCCCCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR TCA 90 bp | CCAGGATCTGGGAGTTCCGAGTCCAAAGCCTATCCGCGGACAGTGAGGGGGACGGCTGGCTGGGGCAGCTaGGACTGCCGAAGGCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: PGSGSSESKAYPRTVRGTAGWGS*DCRRRR Trigger: ACGGCGCCTTCGGCAGTCTCAGCTGCCCCAGCCAGC...CGTCCCCCTCACTGTCCGCGGATAGGCTTTGGACTCGGAACTCCCAGATCCTGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR GCA 90 bp | AGGGGCAGCGGCAGGCCTGACCCAGAGGCATCTGCGGGCCAGACTAGGTGCAAAGGGTGCGTGTGCGTGTaGTGGCTGGGGCAGCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: RGSGRPDPEASAGQTRCKGCVCV*WLGQLR Trigger: TCTCAGCTGCCCCAGCCAGCACACGCACACGCACCC...TTTGCACCTAGTCTGGCCCGCAGATGCCTCTGGGTCAGGCCTGCCGCTGCCCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CCA 90 bp | CCAGGATCTGGGAGTTCCGAGTCCAAAGCCTATCCGCGGACAGTGAGGGGGACGCCACGTAGCCCGGGTTaGTGGGGGACGGGTGCGTGT | + |
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Preference number: 4 (lower is better) Translates to: PGSGSSESKAYPRTVRGTPRSPG*WGTGAC Trigger: ACACGCACCCGTCCCCCACCAACCCGGGCTACGTGG...CGTCCCCCTCACTGTCCGCGGATAGGCTTTGGACTCGGAACTCCCAGATCCTGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR GCA 90 bp | AGCGGCAGGCCTGACCCAGAGGCATCTGCGGGCCAGACTAGGTGCAAAGGAAAGGCAGGTTCTTCGGCTTaGGCCGCGGCCGGTACTTGT | + |
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Preference number: 4 (lower is better) Translates to: SGRPDPEASAGQTRCKGKAGSSA*AAAGTC Trigger: ACAAGTACCGGCCGCGGCGCAAGCCGAAGAACCTGC...CTTTCCTTTGCACCTAGTCTGGCCCGCAGATGCCTCTGGGTCAGGCCTGCCGCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR GCA 90 bp | ATCTGGGAGTTCCGAGTCCAAAGCCTATCCGCGGACAGTGAGGGGGACGTAAATGGGGACGGGTGCGTGTaGGTGTGCTGGCTGGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: IWEFRVQSLSADSEGDVNGDGCV*VCWLGQ Trigger: CTGCCCCAGCCAGCACACGCACACGCACCCGTCCCC...ATTTACGTCCCCCTCACTGTCCGCGGATAGGCTTTGGACTCGGAACTCCCAGAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CCA 90 bp | ATCTGGGAGTTCCGAGTCCAAAGCCTATCCGCGGACAGTGAGGGGGACGTAAATTCTGATAGCCCAGGGTaGACGCGTAGGGCAGCGCGC | + |
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Preference number: 4 (lower is better) Translates to: IWEFRVQSLSADSEGDVNSDSPG*TRRAAR Trigger: GCGCGCTGCCCTACGCGTCCACCCTGGGCTATCAGA...ATTTACGTCCCCCTCACTGTCCGCGGATAGGCTTTGGACTCGGAACTCCCAGAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CCA 90 bp | CCAGGATCTGGGAGTTCCGAGTCCAAAGCCTATCCGCGGACAGTGAGGGGGACGAGTCTTGGTCATGCCTaGGAAGAGGATGTAGGCGAC | + |
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Preference number: 4 (lower is better) Translates to: PGSGSSESKAYPRTVRGTSLGHA*EEDVGD Trigger: GTCGCCTACATCCTCTTCCCAGGCATGACCAAGACT...CGTCCCCCTCACTGTCCGCGGATAGGCTTTGGACTCGGAACTCCCAGATCCTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CCA 90 bp | AGCGGCAGGCCTGACCCAGAGGCATCTGCGGGCCAGACTAGGTGCAAAGGAAAGGGTCTATGCCAGTCTTaGTCATGCCTGGGAAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: SGRPDPEASAGQTRCKGKGLCQS*SCLGRG Trigger: TCCTCTTCCCAGGCATGACCAAGACTGGCATAGACC...CTTTCCTTTGCACCTAGTCTGGCCCGCAGATGCCTCTGGGTCAGGCCTGCCGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR GCA 90 bp | GTACAGTCGAGACTTGCTTTGGGAGAGTCGGGAGAGGGGAAGAAGATGTGTAGCGCAGGTTCTTCGGCTTaGGCCGCGGCCGGTACTTGT | + |
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Preference number: 4 (lower is better) Translates to: VQSRLALGESGEGKKMCSAGSSA*AAAGTC Trigger: ACAAGTACCGGCCGCGGCGCAAGCCGAAGAACCTGC...GCTACACATCTTCTTCCCCTCTCCCGACTCTCCCAAAGCAAGTCTCGACTGTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR TCA 90 bp | TATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCAAAGCCGCTGGCTGGGGCAGCTaGGACTGCCGAAGGCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: YTHILDIIPGSGSSESKAAGWGS*DCRRRR Trigger: ACGGCGCCTTCGGCAGTCTCAGCTGCCCCAGCCAGC...GGCTTTGGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR TCA 90 bp | GTGTCTGACGGCACAGCACCAAGACTCAGCTCTTTTTCTTCAGTGGGAAAGGAAGGCCGTAGCGTGGGCTaGCGAATAAGGGTCTATGCC | + |
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Preference number: 4 (lower is better) Translates to: VSDGTAPRLSSFSSVGKEGRSVG*RIRVYA Trigger: GGCATAGACCCTTATTCGTCAGCCCACGCTACGGCC...TTCCTTTCCCACTGAAGAAAAAGAGCTGAGTCTTGGTGCTGTGCCGTCAGACAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR TCA 90 bp | TATATATATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCGCAGGCCGGCCGCCTTaGGCGGGTCCGTGTCGCCCA | + |
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Preference number: 4 (lower is better) Translates to: YIYTHILDIIPGSGSSESAGRPP*AGPCRP Trigger: TGGGCGACACGGACCCGCTCAAGGCGGCCGGCCTGC...GGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATATATATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054819.10 |
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| CDS-3UTR GCA 90 bp | GTACAGTCGAGACTTGCTTTGGGAGAGTCGGGAGAGGGGAAGAAGATGTGTAGCTGCCAGTCTTGGTCATaGCTGGGAAGAGGATGTAGG | + |
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Preference number: 4 (lower is better) Translates to: VQSRLALGESGEGKKMCSCQSWS*LGRGCR Trigger: CCTACATCCTCTTCCCAGGCATGACCAAGACTGGCA...GCTACACATCTTCTTCCCCTCTCCCGACTCTCCCAAAGCAAGTCTCGACTGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CCA 90 bp | GTACAGTCGAGACTTGCTTTGGGAGAGTCGGGAGAGGGGAAGAAGATGTGTAGCGGTCTATGCCAGTCTTaGTCATGCCTGGGAAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: VQSRLALGESGEGKKMCSGLCQS*SCLGRG Trigger: TCCTCTTCCCAGGCATGACCAAGACTGGCATAGACC...GCTACACATCTTCTTCCCCTCTCCCGACTCTCCCAAAGCAAGTCTCGACTGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR GCA 90 bp | ATCTGGGAGTTCCGAGTCCAAAGCCTATCCGCGGACAGTGAGGGGGACGTAAATACGAATAAGGGTCTATaGCAGTCTTGGTCATGCCTG | + |
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Preference number: 4 (lower is better) Translates to: IWEFRVQSLSADSEGDVNTNKGL*QSWSCL Trigger: CAGGCATGACCAAGACTGGCATAGACCCTTATTCGT...ATTTACGTCCCCCTCACTGTCCGCGGATAGGCTTTGGACTCGGAACTCCCAGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CCA 90 bp | TATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCAAAGCCAGGGCAGCGCGCTGGTaGCCAACGTGTGGGGCACTT | + |
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Preference number: 4 (lower is better) Translates to: YTHILDIIPGSGSSESKARAARW*PTCGAL Trigger: AAGTGCCCCACACGTTGGCCACCAGCGCGCTGCCCT...GGCTTTGGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CCA 90 bp | GTACAGTCGAGACTTGCTTTGGGAGAGTCGGGAGAGGGGAAGAAGATGTGTAGCCACCCATCTTCTGGATaGCACTGGAACTGTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: VQSRLALGESGEGKKMCSHPSSG*HWNCPS Trigger: AGAAGGACAGTTCCAGTGCCATCCAGAAGATGGGTG...GCTACACATCTTCTTCCCCTCTCCCGACTCTCCCAAAGCAAGTCTCGACTGTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183065.2 |
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| CDS-3UTR TCA 90 bp | TATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCAAAGCCGGCCGTAGCGTGGGCTaGCGAATAAGGGTCTATGCC | + |
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Preference number: 4 (lower is better) Translates to: YTHILDIIPGSGSSESKAGRSVG*RIRVYA Trigger: GGCATAGACCCTTATTCGTCAGCCCACGCTACGGCC...GGCTTTGGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR GCA 90 bp | TATATATATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCGGGTGCGTGTGCGTGTaGTGGCTGGGGCAGCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: YIYTHILDIIPGSGSSESGCVCV*WLGQLR Trigger: TCTCAGCTGCCCCAGCCAGCACACGCACACGCACCC...GGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATATATATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CCA 90 bp | TATATATATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCGGGCGCGCAGCCTTTTaGCTTCATCGATGTAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: YIYTHILDIIPGSGSSESGRAAF*LHRCKA Trigger: GGCCTTACATCGATGAAGCCAAAAGGCTGCGCGCCC...GGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATATATATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR GCA 90 bp | TATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCAAAGCCACGAATAAGGGTCTATaGCAGTCTTGGTCATGCCTG | + |
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Preference number: 4 (lower is better) Translates to: YTHILDIIPGSGSSESKATNKGL*QSWSCL Trigger: CAGGCATGACCAAGACTGGCATAGACCCTTATTCGT...GGCTTTGGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR TCA 90 bp | TATATATATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCCATTCATGGGCCGCTTaGTGTGGTCTGAAGGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: YIYTHILDIIPGSGSSESHSWAA*CGLKVW Trigger: CCAAACCTTCAGACCACATCAAGCGGCCCATGAATG...GGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATATATATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054819.10 |
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| CDS-3UTR TCA 90 bp | TATATATATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCCATACCTGTCCTTCTTaGGCAGGTTCTTCGGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: YIYTHILDIIPGSGSSESHTCPS*AGSSAC Trigger: GCAAGCCGAAGAACCTGCTCAAGAAGGACAGGTATG...GGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATATATATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054819.10 |
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| CDS-3UTR TCA 90 bp | TATATATATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCTGGAACTGTCCTTCTTaGGCAGGTTCTTCGGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: YIYTHILDIIPGSGSSESWNCPS*AGSSAC Trigger: GCAAGCCGAAGAACCTGCTCAAGAAGGACAGTTCCA...GGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATATATATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183065.2 |
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| CDS-3UTR GCA 90 bp | TATATATATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCTGCCAGTCTTGGTCATaGCTGGGAAGAGGATGTAGG | + |
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Preference number: 4 (lower is better) Translates to: YIYTHILDIIPGSGSSESCQSWS*LGRGCR Trigger: CCTACATCCTCTTCCCAGGCATGACCAAGACTGGCA...GGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATATATATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CCA 90 bp | TATATATATACGCATATTCTAGATATAATACCAGGATCTGGGAGTTCCGAGTCCAGTCTTGGTCATGCCTaGGAAGAGGATGTAGGCGAC | + |
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Preference number: 4 (lower is better) Translates to: YIYTHILDIIPGSGSSESSLGHA*EEDVGD Trigger: GTCGCCTACATCCTCTTCCCAGGCATGACCAAGACT...GGACTCGGAACTCCCAGATCCTGGTATTATATCTAGAATATGCGTATATATATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS TCA 90 bp | GGTTGGTGGGGGACGGGTGCGTGTGCGTGTGCTGGCTGGGGCAGCTaGGACTGCCGAAGGCGCCGTTCTGATAGCCCAGGGTGGACGCGT | + |
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Preference number: 5 (lower is better) Translates to: GWWGTGACACAGWGS*DCRRRRSDSPGWTR Trigger: ACGCGTCCACCCTGGGCTATCAGAACGGCGCCTTCGGCAGTCTCAGCTGCCCCAGCCAGCACACGCACACGCACCCGTCCCCCACCAACC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS CCA 90 bp | CGCCGTTCTGATAGCCCAGGGTGGACGCGTAGGGCAGCGCGCTGGTaGCCAACGTGTGGGGCACTTCACCCATCTTCTGGATGGCACTGG | + |
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Preference number: 5 (lower is better) Translates to: RRSDSPGWTRRAARW*PTCGALHPSSGWHW Trigger: CCAGTGCCATCCAGAAGATGGGTGAAGTGCCCCACACGTTGGCCACCAGCGCGCTGCCCTACGCGTCCACCCTGGGCTATCAGAACGGCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS CCA 90 bp | AGGCGCCGTTCTGATAGCCCAGGGTGGACGCGTAGGGCAGCGCGCTaGTGGCCAACGTGTGGGGCACTTCACCCATCTTCTGGATGGCAC | + |
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Preference number: 5 (lower is better) Translates to: RRRSDSPGWTRRAAR*WPTCGALHPSSGWH Trigger: GTGCCATCCAGAAGATGGGTGAAGTGCCCCACACGTTGGCCACCAGCGCGCTGCCCTACGCGTCCACCCTGGGCTATCAGAACGGCGCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CAA 90 bp | TGGGCAAGGGGCAGCGGCAGGCCTGACCCAGAGGCATCTGCGGGCCAGACTAGGGGGTCTATGCCAGTCTaGGTCATGCCTGGGAAGAGG | + |
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Preference number: 5 (lower is better) Translates to: WARGSGRPDPEASAGQTRGSMPV*VMPGKR Trigger: CCTCTTCCCAGGCATGACCAAGACTGGCATAGACCC...CCTAGTCTGGCCCGCAGATGCCTCTGGGTCAGGCCTGCCGCTGCCCCTTGCCCA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS GCA 90 bp | GATGGCACTGGAACTAAATTGCGCAGGGTCCAGCAGGGAGTAAGGTaGCGAGGCAGGCGGCAAGAAGGCCCGGGCTTTCTCGGGCGCGCT | + |
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Preference number: 5 (lower is better) Translates to: DGTGTKLRRVQQGVR*RGRRQEGPGFLGRA Trigger: AGCGCGCCCGAGAAAGCCCGGGCCTTCTTGCCGCCTGCCTCGGCACCTTACTCCCTGCTGGACCCTGCGCAATTTAGTTCCAGTGCCATC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054819.10 |
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| CDS-3UTR CAA 90 bp | AGGGGCAGCGGCAGGCCTGACCCAGAGGCATCTGCGGGCCAGACTAGGTGCAAAGGGTCTATGCCAGTCTaGGTCATGCCTGGGAAGAGG | + |
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Preference number: 5 (lower is better) Translates to: RGSGRPDPEASAGQTRCKGSMPV*VMPGKR Trigger: CCTCTTCCCAGGCATGACCAAGACTGGCATAGACCC...TTTGCACCTAGTCTGGCCCGCAGATGCCTCTGGGTCAGGCCTGCCGCTGCCCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS-3UTR CAA 90 bp | AGGGGCAGCGGCAGGCCTGACCCAGAGGCATCTGCGGGCCAGACTAGGTGCAAAACATACCTGTCCTTCTaGAGCAGGTTCTTCGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: RGSGRPDPEASAGQTRCKTYLSF*SRFFGL Trigger: CAAGCCGAAGAACCTGCTCAAGAAGGACAGGTATGT...TTTGCACCTAGTCTGGCCCGCAGATGCCTCTGGGTCAGGCCTGCCGCTGCCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054819.10 |
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| CDS-3UTR CAA 90 bp | GTACAGTCGAGACTTGCTTTGGGAGAGTCGGGAGAGGGGAAGAAGATGTGTAGCCTGGAACTGTCCTTCTaGAGCAGGTTCTTCGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: VQSRLALGESGEGKKMCSLELSF*SRFFGL Trigger: CAAGCCGAAGAACCTGCTCAAGAAGGACAGTTCCAG...GCTACACATCTTCTTCCCCTCTCCCGACTCTCCCAAAGCAAGTCTCGACTGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183065.2 |
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| CDS-3UTR CAA 90 bp | GTGTCTGACGGCACAGCACCAAGACTCAGCTCTTTTTCTTCAGTGGGAAAGGAAGCATTCATGGGCCGCTaGATGTGGTCTGAAGGTTTG | + |
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Preference number: 5 (lower is better) Translates to: VSDGTAPRLSSFSSVGKEAFMGR*MWSEGL Trigger: CAAACCTTCAGACCACATCAAGCGGCCCATGAATGC...TTCCTTTCCCACTGAAGAAAAAGAGCTGAGTCTTGGTGCTGTGCCGTCAGACAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054819.10 |
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| CDS TCA 72 bp | GGCCGTCGGAAGCCCCCACGGGCAGGCCGGCCGCCTTaGGCGGGTCCGTGTCGCCCAGGTAGGGCAGGGGGA | + |
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Preference number: 6 (lower is better) Translates to: GRRKPPRAGRPP*AGPCRPGRAGG Trigger: TCCCCCTGCCCTACCTGGGCGACACGGACCCGCTCAAGGCGGCCGGCCTGCCCGTGGGGGCTTCCGACGGCC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000054819.10 |
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| CDS CCA 72 bp | CCCGGGTTGGTGGGGGACGGGTGCGTGTGCGTGTGCTaGCTGGGGCAGCTGAGACTGCCGAAGGCGCCGTTC | + |
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Preference number: 6 (lower is better) Translates to: PGLVGDGCVCVC*LGQLRLPKAPF Trigger: GAACGGCGCCTTCGGCAGTCTCAGCTGCCCCAGCCAGCACACGCACACGCACCCGTCCCCCACCAACCCGGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS CCA 72 bp | GATAGCCCAGGGTGGACGCGTAGGGCAGCGCGCTGGTaGCCAACGTGTGGGGCACTTCACCCATCTTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: DSPGWTRRAARW*PTCGALHPSSG Trigger: TCCAGAAGATGGGTGAAGTGCCCCACACGTTGGCCACCAGCGCGCTGCCCTACGCGTCCACCCTGGGCTATC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS CCA 72 bp | TCTGATAGCCCAGGGTGGACGCGTAGGGCAGCGCGCTaGTGGCCAACGTGTGGGGCACTTCACCCATCTTCT | + |
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Preference number: 6 (lower is better) Translates to: SDSPGWTRRAAR*WPTCGALHPSS Trigger: AGAAGATGGGTGAAGTGCCCCACACGTTGGCCACCAGCGCGCTGCCCTACGCGTCCACCCTGGGCTATCAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054819.10 ENSMUST00000183065.2 |
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| CDS GCA 72 bp | GGAACTAAATTGCGCAGGGTCCAGCAGGGAGTAAGGTaGCGAGGCAGGCGGCAAGAAGGCCCGGGCTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: GTKLRRVQQGVR*RGRRQEGPGFL Trigger: GAGAAAGCCCGGGCCTTCTTGCCGCCTGCCTCGGCACCTTACTCCCTGCTGGACCCTGCGCAATTTAGTTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054819.10 |
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| CDS CAA 90 bp | CGTGTGGGGCACTTCACCCATCTTCTGGATGGCACTGGAACTAAATaGCGCAGGGTCCAGCAGGGAGTAAGGTGCCGAGGCAGGCGGCAA | + |
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Preference number: 6 (lower is better) Translates to: RVGHFTHLLDGTGTK*RRVQQGVRCRGRRQ Trigger: TTGCCGCCTGCCTCGGCACCTTACTCCCTGCTGGACCCTGCGCAATTTAGTTCCAGTGCCATCCAGAAGATGGGTGAAGTGCCCCACACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054819.10 |
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| CDS CCA 72 bp | CTGGTGGCCAACGTGTGGGGCACTTCACCCATCTTCTaGATGGCACTGGAACTAAATTGCGCAGGGTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: LVANVWGTSPIF*MALELNCAGSS Trigger: GCTGGACCCTGCGCAATTTAGTTCCAGTGCCATCCAGAAGATGGGTGAAGTGCCCCACACGTTGGCCACCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054819.10 |
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| CDS CCA 72 bp | CTGGTGGCCAACGTGTGGGGCACTTCACCCATCTTCTaGATGGCACTGGAACTGTCCTTCTTGAGCAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: LVANVWGTSPIF*MALELSFLSRF Trigger: GAACCTGCTCAAGAAGGACAGTTCCAGTGCCATCCAGAAGATGGGTGAAGTGCCCCACACGTTGGCCACCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183065.2 |
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| CDS CAA 72 bp | CACTTCACCCATCTTCTGGATGGCACTGGAACTAAATaGCGCAGGGTCCAGCAGGGAGTAAGGTGCCGAGGC | + |
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Preference number: 6 (lower is better) Translates to: HFTHLLDGTGTK*RRVQQGVRCRG Trigger: GCCTCGGCACCTTACTCCCTGCTGGACCCTGCGCAATTTAGTTCCAGTGCCATCCAGAAGATGGGTGAAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054819.10 |
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