Pregenerated sensors for SOX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096014Ensembl transcript IDs: ENSMUST00000180353.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | TATCGAGAGCGCGGGGACCTCGGTACAAAGTCGGGCTCTGGAGGCTaGGGCGCAGGCCTCGCTCTTCGTCGCCGGGGCGCCGGCCTTAAG | + |
Preference number: 1 (lower is better) Translates to: YRERGDLGTKSGSGG*GAGLALRRRGAGLK Trigger: CTTAAGGCCGGCGCCCCGGCGACGAAGAGCGAGGCCTGCGCCCCAGCCTCCAGAGCCCGACTTTGTACCGAGGTCCCCGCGCTCTCGATA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR TCA 90 bp | CTAAGAGGCCAGTCTGGTGTCAGCGCCTCGGAGTCCTGGGGAAGGTaGTGGGGGCAGATGTCACCTGGCGCTCGGCTCTCCAGAGCGGCC | + |
Preference number: 1 (lower is better) Translates to: LRGQSGVSASESWGR*WGQMSPGARLSRAA Trigger: GGCCGCTCTGGAGAGCCGAGCGCCAGGTGACATCTGCCCCCATCACCTTCCCCAGGACTCCGAGGCGCTGACACCAGACTGGCCTCTTAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR TCA 90 bp | GAACTCCAGAAGCCCAGGCAAAACAGAGGTGAGTGTGGCCACCTTTaGTTCTCCCTAAATAAAGAGCAGGGTGGTGTTGGGGGCCAGTCT | + |
Preference number: 1 (lower is better) Translates to: ELQKPRQNRGECGHL*FSLNKEQGGVGGQS Trigger: AGACTGGCCCCCAACACCACCCTGCTCTTTATTTAGGGAGAATCAAAGGTGGCCACACTCACCTCTGTTTTGCCTGGGCTTCTGGAGTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR TCA 90 bp | TATCCTTGGCCTTGTCCCACCACTGAGCACAACCCATCCTCCTTCTaGGACCCAGCTGCCTCAAAACTGCTACAGTATGCAAAAGGCAGA | + |
Preference number: 1 (lower is better) Translates to: YPWPCPTTEHNPSSF*DPAASKLLQYAKGR Trigger: TCTGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGGAGGATGGGTTGTGCTCAGTGGTGGGACAAGGCCAAGGATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR GCA 90 bp | CTGAGCACAACCCATCCTCCTTCTGAGACCCAGCTGCCTCAAAACTaGTACAGTATGCAAAAGGCAGAACCACAGGAAAGAAATGCAAAA | + |
Preference number: 1 (lower is better) Translates to: LSTTHPPSETQLPQN*YSMQKAEPQERNAK Trigger: TTTTGCATTTCTTTCCTGTGGTTCTGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGGAGGATGGGTTGTGCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR TCA 90 bp | TTTCTCCTTGTCTTTCACATCAGTAGAACCCAAAGGAAGGTGGCTTaGAAGCCTGGCACAAAGAGTTCTTGTTCACTGGGTAGAGCTCAA | + |
Preference number: 1 (lower is better) Translates to: FLLVFHISRTQRKVA*KPGTKSSCSLGRAQ Trigger: TTGAGCTCTACCCAGTGAACAAGAACTCTTTGTGCCAGGCTTTCAAGCCACCTTCCTTTGGGTTCTACTGATGTGAAAGACAAGGAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR-3UTR CCA 90 bp | CCTTCTGAGACCCAGCTGCCTCAAAACTGCTACAGTATGCAAAAGGCAGAACCATACAAAGTCGGGCTCTaGAGGCTGGGGCGCAGGCCT | + |
Preference number: 2 (lower is better) Translates to: PSETQLPQNCYSMQKAEPYKVGL*RLGRRP Trigger: AGGCCTGCGCCCCAGCCTCCAGAGCCCGACTTTGTA...TGGTTCTGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR CAA 90 bp | AAGTCACGGAAACGCTGCACTCCGCTTGGTGGGATTTCCTTACTCTaGGGCCCTGCAGATAATTTCTCCTCCAACAGATTGCTAATTGTA | + |
Preference number: 2 (lower is better) Translates to: KSRKRCTPLGGISLL*GPADNFSSNRLLIV Trigger: TACAATTAGCAATCTGTTGGAGGAGAAATTATCTGCAGGGCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTTTCCGTGACTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR CAA 90 bp | GGTGAGAGACTCTGTGGTGGTGAGGTCTGGGTCAGGATTGCTTCCTaGAAGCACAGGAAGATAATTTCACTTACAATTCCAATTACAGAG | + |
Preference number: 2 (lower is better) Translates to: GERLCGGEVWVRIAS*KHRKIISLTIPITE Trigger: CTCTGTAATTGGAATTGTAAGTGAAATTATCTTCCTGTGCTTCAAGGAAGCAATCCTGACCCAGACCTCACCACCACAGAGTCTCTCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR-3UTR CCA 90 bp | GGGGTGTTCTTTTATTACCTCATCAGAAAGCAGTGGGCGTCATTCTTGAATCTCTTGGCATCGCCTCGCTaGGTTTTTGTCTTTTGTCCT | + |
Preference number: 2 (lower is better) Translates to: GVFFYYLIRKQWASFLNLLASPR*VFVFCP Trigger: AGGACAAAAGACAAAAACCCAGCGAGGCGATGCCAA...GAGATTCAAGAATGACGCCCACTGCTTTCTGATGAGGTAATAAAAGAACACCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR-3UTR CCA 90 bp | GGGGTGTTCTTTTATTACCTCATCAGAAAGCAGTGGGCGTCATTCTTGAATCTCAAGTCCACTTTTGAATaGCTAGTCCATATTCATTCC | + |
Preference number: 2 (lower is better) Translates to: GVFFYYLIRKQWASFLNLKSTFE*LVHIHS Trigger: GGAATGAATATGGACTAGCCATTCAAAAGTGGACTT...GAGATTCAAGAATGACGCCCACTGCTTTCTGATGAGGTAATAAAAGAACACCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR-3UTR CCA 90 bp | GTCAGGATTGCTTCCTTGAAGCACAGGAAGATAATTTCACTTACAATTCCAATTGGATTTCCTTACTCTTaGGCCCTGCAGATAATTTCT | + |
Preference number: 2 (lower is better) Translates to: VRIASLKHRKIISLTIPIGFPYS*ALQIIS Trigger: AGAAATTATCTGCAGGGCCCAAGAGTAAGGAAATCC...AATTGGAATTGTAAGTGAAATTATCTTCCTGTGCTTCAAGGAAGCAATCCTGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR CCA 72 bp | CGCGGGGACCTCGGTACAAAGTCGGGCTCTGGAGGCTaGGGCGCAGGCCTCGCTCTTCGTCGCCGGGGCGCC | + |
Preference number: 3 (lower is better) Translates to: RGDLGTKSGSGG*GAGLALRRRGA Trigger: GGCGCCCCGGCGACGAAGAGCGAGGCCTGCGCCCCAGCCTCCAGAGCCCGACTTTGTACCGAGGTCCCCGCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR CCA 72 bp | TCGAGAGCGCGGGGACCTCGGTACAAAGTCGGGCTCTaGAGGCTGGGGCGCAGGCCTCGCTCTTCGTCGCCG | + |
Preference number: 3 (lower is better) Translates to: SRARGPRYKVGL*RLGRRPRSSSP Trigger: CGGCGACGAAGAGCGAGGCCTGCGCCCCAGCCTCCAGAGCCCGACTTTGTACCGAGGTCCCCGCGCTCTCGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR TCA 72 bp | CAGTCTGGTGTCAGCGCCTCGGAGTCCTGGGGAAGGTaGTGGGGGCAGATGTCACCTGGCGCTCGGCTCTCC | + |
Preference number: 3 (lower is better) Translates to: QSGVSASESWGR*WGQMSPGARLS Trigger: GGAGAGCCGAGCGCCAGGTGACATCTGCCCCCATCACCTTCCCCAGGACTCCGAGGCGCTGACACCAGACTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR CCA 72 bp | GCACGCTGTCTTGGCGGTGGCTGTTGTCCCTATCCTTaGCCTTGTCCCACCACTGAGCACAACCCATCCTCC | + |
Preference number: 3 (lower is better) Translates to: ARCLGGGCCPYP*PCPTTEHNPSS Trigger: GGAGGATGGGTTGTGCTCAGTGGTGGGACAAGGCCAAGGATAGGGACAACAGCCACCGCCAAGACAGCGTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR TCA 72 bp | TGGCTGTTGTCCCTATCCTTGGCCTTGTCCCACCACTaGGCACAACCCATCCTCCTTCTGAGACCCAGCTGC | + |
Preference number: 3 (lower is better) Translates to: WLLSLSLALSHH*AQPILLLRPSC Trigger: GCAGCTGGGTCTCAGAAGGAGGATGGGTTGTGCTCAGTGGTGGGACAAGGCCAAGGATAGGGACAACAGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR CCA 72 bp | TCCCAGAGAGGAATCGGGAGGGGATGGGATAAGACCTaGGTGAGAGACTCTGTGGTGGTGAGGTCTGGGTCA | + |
Preference number: 3 (lower is better) Translates to: SQRGIGRGWDKT*VRDSVVVRSGS Trigger: TGACCCAGACCTCACCACCACAGAGTCTCTCACCCAGGTCTTATCCCATCCCCTCCCGATTCCTCTCTGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR TCA 72 bp | CCTTGTCCCACCACTGAGCACAACCCATCCTCCTTCTaGGACCCAGCTGCCTCAAAACTGCTACAGTATGCA | + |
Preference number: 3 (lower is better) Translates to: PCPTTEHNPSSF*DPAASKLLQYA Trigger: TGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGGAGGATGGGTTGTGCTCAGTGGTGGGACAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR CCA 72 bp | CATGAAAACACCAAAGTTCAGTCTAAGAGGCCAGTCTaGTGTCAGCGCCTCGGAGTCCTGGGGAAGGTGATG | + |
Preference number: 3 (lower is better) Translates to: HENTKVQSKRPV*CQRLGVLGKVM Trigger: CATCACCTTCCCCAGGACTCCGAGGCGCTGACACCAGACTGGCCTCTTAGACTGAACTTTGGTGTTTTCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR CCA 72 bp | TATGTTGGATTTTCCCAGAGAGGAATCGGGAGGGGATaGGATAAGACCTGGGTGAGAGACTCTGTGGTGGTG | + |
Preference number: 3 (lower is better) Translates to: YVGFSQRGIGRG*DKTWVRDSVVV Trigger: CACCACCACAGAGTCTCTCACCCAGGTCTTATCCCATCCCCTCCCGATTCCTCTCTGGGAAAATCCAACATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR GCA 72 bp | TTTCTCTTTCCCCACCGAATAAAGTCACGGAAACGCTaGACTCCGCTTGGTGGGATTTCCTTACTCTTGGGC | + |
Preference number: 3 (lower is better) Translates to: FLFPHRIKSRKR*TPLGGISLLLG Trigger: GCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTTTCCGTGACTTTATTCGGTGGGGAAAGAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR CCA 72 bp | AACGCTGCACTCCGCTTGGTGGGATTTCCTTACTCTTaGGCCCTGCAGATAATTTCTCCTCCAACAGATTGC | + |
Preference number: 3 (lower is better) Translates to: NAALRLVGFPYS*ALQIISPPTDC Trigger: GCAATCTGTTGGAGGAGAAATTATCTGCAGGGCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR GCA 72 bp | ACCCATCCTCCTTCTGAGACCCAGCTGCCTCAAAACTaGTACAGTATGCAAAAGGCAGAACCACAGGAAAGA | + |
Preference number: 3 (lower is better) Translates to: THPPSETQLPQN*YSMQKAEPQER Trigger: TCTTTCCTGTGGTTCTGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGGAGGATGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR GCA 72 bp | AAACACAGCATTCTGTGTTTACATTCCCTGGCAATCTaGATCCCGGTTCACACAGGAGAGAGTGTGTGTGTG | + |
Preference number: 3 (lower is better) Translates to: KHSILCLHSLAI*IPVHTGESVCV Trigger: CACACACACACTCTCTCCTGTGTGAACCGGGATGCAGATTGCCAGGGAATGTAAACACAGAATGCTGTGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR CCA 72 bp | GGAATGATAAACACAGCATTCTGTGTTTACATTCCCTaGCAATCTGCATCCCGGTTCACACAGGAGAGAGTG | + |
Preference number: 3 (lower is better) Translates to: GMINTAFCVYIP*QSASRFTQERV Trigger: CACTCTCTCCTGTGTGAACCGGGATGCAGATTGCCAGGGAATGTAAACACAGAATGCTGTGTTTATCATTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR-3UTR CAA 90 bp | GGGGTGTTCTTTTATTACCTCATCAGAAAGCAGTGGGCGTCATTCTTGAATCTCGGGATTTCCTTACTCTaGGGCCCTGCAGATAATTTC | + |
Preference number: 3 (lower is better) Translates to: GVFFYYLIRKQWASFLNLGISLL*GPADNF Trigger: GAAATTATCTGCAGGGCCCAAGAGTAAGGAAATCCC...GAGATTCAAGAATGACGCCCACTGCTTTCTGATGAGGTAATAAAAGAACACCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR CCA 72 bp | TCCTTGTCTTTCACATCAGTAGAACCCAAAGGAAGGTaGCTTGAAAGCCTGGCACAAAGAGTTCTTGTTCAC | + |
Preference number: 3 (lower is better) Translates to: SLSFTSVEPKGR*LESLAQRVLVH Trigger: GTGAACAAGAACTCTTTGTGCCAGGCTTTCAAGCCACCTTCCTTTGGGTTCTACTGATGTGAAAGACAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR CCA 90 bp | GCTGGGGCGCAGGCCTCGCTCTTCGTCGCCGGGGCGCCGGCCTTAAGCCGCAGTGATCCTGGTTGGCCTTaGTGCCCCCGCCGCCGCCGC | + |
Preference number: 4 (lower is better) Translates to: AGAQASLFVAGAPALSRSDPGWP*CPRRRR Trigger: GCGGCGGCGGCGGGGGCACCAAGGCCAACCAGGATC...ACTGCGGCTTAAGGCCGGCGCCCCGGCGACGAAGAGCGAGGCCTGCGCCCCAGC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR GCA 90 bp | CAGTCTAAGAGGCCAGTCTGGTGTCAGCGCCTCGGAGTCCTGGGGAAGGTGATGGCGCCGCCGGGCGAGTaGAGGTCGGTCTCCATCATC | + |
Preference number: 4 (lower is better) Translates to: QSKRPVWCQRLGVLGKVMAPPGE*RSVSII Trigger: GATGATGGAGACCGACCTGCACTCGCCCGGCGGCGC...CATCACCTTCCCCAGGACTCCGAGGCGCTGACACCAGACTGGCCTCTTAGACTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR CCA 90 bp | GTGGCTGTTGTCCCTATCCTTGGCCTTGTCCCACCACTGAGCACAACCCATCCTGAGTGCAGCCGGCTTTaGGCCGCCGCAGCCGCTGCC | + |
Preference number: 4 (lower is better) Translates to: VAVVPILGLVPPLSTTHPECSRL*AAAAAA Trigger: GGCAGCGGCTGCGGCGGCCCAAAGCCGGCTGCACTC...AGGATGGGTTGTGCTCAGTGGTGGGACAAGGCCAAGGATAGGGACAACAGCCAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR TCA 90 bp | CATCCTCCTTCTGAGACCCAGCTGCCTCAAAACTGCTACAGTATGCAAAAGGCACACGGTGCCCGTGAGTaGGCCGGGGCCGGCGGACTG | + |
Preference number: 4 (lower is better) Translates to: HPPSETQLPQNCYSMQKAHGARE*AGAGGL Trigger: CAGTCCGCCGGCCCCGGCTCACTCACGGGCACCGTG...TGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGGAGGATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR GCA 90 bp | TCCGAAGCCGAGAAAACGCTGTGTGCCTCCTCTGCGGACGATAAATACTGTACATGCGGATGGTGCGGGTaGGGGTGCGCCGGGTGTGCG | + |
Preference number: 4 (lower is better) Translates to: SEAEKTLCASSADDKYCTCGWCG*GCAGCA Trigger: CGCACACCCGGCGCACCCGCACCCGCACCATCCGCA...TGTACAGTATTTATCGTCCGCAGAGGAGGCACACAGCGTTTTCTCGGCTTCGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR CCA 90 bp | CATCCTCCTTCTGAGACCCAGCTGCCTCAAAACTGCTACAGTATGCAAAAGGCAGTGCCTCCTGCATCATaGCCGCGGCCGCAGCCGCCG | + |
Preference number: 4 (lower is better) Translates to: HPPSETQLPQNCYSMQKAVPPAS*PRPQPP Trigger: CGGCGGCTGCGGCCGCGGCCATGATGCAGGAGGCAC...TGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGGAGGATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR CCA 90 bp | GTGGCTGTTGTCCCTATCCTTGGCCTTGTCCCACCACTGAGCACAACCCATCCTTGTCGTAGCGGTGCATaGGCTGCGGGTTGTGAGGAT | + |
Preference number: 4 (lower is better) Translates to: VAVVPILGLVPPLSTTHPCRSGA*AAGCED Trigger: ATCCTCACAACCCGCAGCCCATGCACCGCTACGACA...AGGATGGGTTGTGCTCAGTGGTGGGACAAGGCCAAGGATAGGGACAACAGCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR TCA 90 bp | AACGCTGCACTCCGCTTGGTGGGATTTCCTTACTCTTGGGCCCTGCAGATAATTCGTTCATGGGCCGCTTaGCCCGATCCTGGTTGGCCT | + |
Preference number: 4 (lower is better) Translates to: NAALRLVGFPYSWALQIIRSWAA*PDPGWP Trigger: AGGCCAACCAGGATCGGGTCAAGCGGCCCATGAACG...AATTATCTGCAGGGCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR CCA 90 bp | AACGCTGCACTCCGCTTGGTGGGATTTCCTTACTCTTGGGCCCTGCAGATAATTCCTGAGAGTTGGAGATaGGGCTGTACTGCAGCGCGC | + |
Preference number: 4 (lower is better) Translates to: NAALRLVGFPYSWALQIIPESWR*GCTAAR Trigger: GCGCGCTGCAGTACAGCCCCATCTCCAACTCTCAGG...AATTATCTGCAGGGCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR TCA 90 bp | GGGGTGTTCTTTTATTACCTCATCAGAAAGCAGTGGGCGTCATTCTTGAATCTCTCTCGGCCTCGGACATaGCCTTCCACTCGGCCCCGA | + |
Preference number: 4 (lower is better) Translates to: GVFFYYLIRKQWASFLNLSRPRT*PSTRPR Trigger: TCGGGGCCGAGTGGAAGGTCATGTCCGAGGCCGAGA...GAGATTCAAGAATGACGCCCACTGCTTTCTGATGAGGTAATAAAAGAACACCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR GCA 90 bp | GGGGTGTTCTTTTATTACCTCATCAGAAAGCAGTGGGCGTCATTCTTGAATCTCCCCGTAGGCCAGCTGTaGCTCCTGCATCATGGCCGC | + |
Preference number: 4 (lower is better) Translates to: GVFFYYLIRKQWASFLNLPVGQL*LLHHGR Trigger: GCGGCCATGATGCAGGAGGCACAGCTGGCCTACGGG...GAGATTCAAGAATGACGCCCACTGCTTTCTGATGAGGTAATAAAAGAACACCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR GCA 90 bp | GGGGTGTTCTTTTATTACCTCATCAGAAAGCAGTGGGCGTCATTCTTGAATCTCGGGTGTTCCTTCATGTaGAGCGCGCGCAGTCTCTTG | + |
Preference number: 4 (lower is better) Translates to: GVFFYYLIRKQWASFLNLGCSFM*SARSLL Trigger: CAAGAGACTGCGCGCGCTGCACATGAAGGAACACCC...GAGATTCAAGAATGACGCCCACTGCTTTCTGATGAGGTAATAAAAGAACACCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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3UTR CAA 72 bp | AAACGCTGCACTCCGCTTGGTGGGATTTCCTTACTCTaGGGCCCTGCAGATAATTTCTCCTCCAACAGATTG | + |
Preference number: 4 (lower is better) Translates to: KRCTPLGGISLL*GPADNFSSNRL Trigger: CAATCTGTTGGAGGAGAAATTATCTGCAGGGCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR CCA 90 bp | GTCAGGATTGCTTCCTTGAAGCACAGGAAGATAATTTCACTTACAATTCCAATTCGCTTGACCCGATCCTaGTTGGCCTTGGTGCCCCCG | + |
Preference number: 4 (lower is better) Translates to: VRIASLKHRKIISLTIPIRLTRS*LALVPP Trigger: CGGGGGCACCAAGGCCAACCAGGATCGGGTCAAGCG...AATTGGAATTGTAAGTGAAATTATCTTCCTGTGCTTCAAGGAAGCAATCCTGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS CCA 90 bp | CCGCCCCCGCCCGCCCCGGCCGGGCCCGAGAGGTTCGTGGGCGCCTaGGCGCCGCCGGGCGAGTGCAGGTCGGTCTCCATCATCATGCTG | + |
Preference number: 5 (lower is better) Translates to: PPPPAPAGPERFVGA*APPGECRSVSIIML Trigger: CAGCATGATGATGGAGACCGACCTGCACTCGCCCGGCGGCGCCCAGGCGCCCACGAACCTCTCGGGCCCGGCCGGGGCGGGCGGGGGCGG 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS CCA 90 bp | GGGCACCGTGCCGTTGACGCCCGCGCCCGCGCCCTGGTAGTGCTGTaGCAGCGAGTGCAGCCGGCTTTGGGCCGCCGCAGCCGCTGCCGC | + |
Preference number: 5 (lower is better) Translates to: GHRAVDARARALVVL*QRVQPALGRRSRCR Trigger: GCGGCAGCGGCTGCGGCGGCCCAAAGCCGGCTGCACTCGCTGCCACAGCACTACCAGGGCGCGGGCGCGGGCGTCAACGGCACGGTGCCC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS TCA 90 bp | CCCGTGAGTGAGCCGGGGCCGGCGGACTGCCGCTCGGCTCCGACTTaGCCAGAGATCCGAGGGCGCCCAGGGCCCCCGACGACGCGGCTG | + |
Preference number: 5 (lower is better) Translates to: PVSEPGPADCRSAPT*PEIRGRPGPPTTRL Trigger: CAGCCGCGTCGTCGGGGGCCCTGGGCGCCCTCGGATCTCTGGTCAAGTCGGAGCCGAGCGGCAGTCCGCCGGCCCCGGCTCACTCACGGG 77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR CAA 90 bp | GCTGGGGCGCAGGCCTCGCTCTTCGTCGCCGGGGCGCCGGCCTTAAGCCGCAGTGCGTTCATGGGCCGCTaGACCCGATCCTGGTTGGCC | + |
Preference number: 5 (lower is better) Translates to: AGAQASLFVAGAPALSRSAFMGR*TRSWLA Trigger: GGCCAACCAGGATCGGGTCAAGCGGCCCATGAACGC...ACTGCGGCTTAAGGCCGGCGCCCCGGCGACGAAGAGCGAGGCCTGCGCCCCAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR CAA 90 bp | AACGCTGCACTCCGCTTGGTGGGATTTCCTTACTCTTGGGCCCTGCAGATAATTCGAGTGCAGCCGGCTTaGGGCCGCCGCAGCCGCTGC | + |
Preference number: 5 (lower is better) Translates to: NAALRLVGFPYSWALQIIRVQPA*GRRSRC Trigger: GCAGCGGCTGCGGCGGCCCAAAGCCGGCTGCACTCG...AATTATCTGCAGGGCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS-3UTR CAA 90 bp | CCTTCTGAGACCCAGCTGCCTCAAAACTGCTACAGTATGCAAAAGGCAGAACCACGATCCTGGTTGGCCTaGGTGCCCCCGCCGCCGCCG | + |
Preference number: 5 (lower is better) Translates to: PSETQLPQNCYSMQKAEPRSWLA*VPPPPP Trigger: CGGCGGCGGCGGGGGCACCAAGGCCAACCAGGATCG...TGGTTCTGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS TCA 72 bp | GAGCCGGGGCCGGCGGACTGCCGCTCGGCTCCGACTTaGCCAGAGATCCGAGGGCGCCCAGGGCCCCCGACG | + |
Preference number: 6 (lower is better) Translates to: EPGPADCRSAPT*PEIRGRPGPPT Trigger: CGTCGGGGGCCCTGGGCGCCCTCGGATCTCTGGTCAAGTCGGAGCCGAGCGGCAGTCCGCCGGCCCCGGCTC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS TCA 72 bp | ATCTCGCGCAGGTCCCCGGGACACGGTGCCCGTGAGTaGGCCGGGGCCGGCGGACTGCCGCTCGGCTCCGAC | + |
Preference number: 6 (lower is better) Translates to: ISRRSPGHGARE*AGAGGLPLGSD Trigger: GTCGGAGCCGAGCGGCAGTCCGCCGGCCCCGGCTCACTCACGGGCACCGTGTCCCGGGGACCTGCGCGAGAT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS CCA 72 bp | GCCGTTGACGCCCGCGCCCGCGCCCTGGTAGTGCTGTaGCAGCGAGTGCAGCCGGCTTTGGGCCGCCGCAGC | + |
Preference number: 6 (lower is better) Translates to: AVDARARALVVL*QRVQPALGRRS Trigger: GCTGCGGCGGCCCAAAGCCGGCTGCACTCGCTGCCACAGCACTACCAGGGCGCGGGCGCGGGCGTCAACGGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |
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CDS TCA 72 bp | GATCATCTCGCGCAGGTCCCCGGGACACGGTGCCCGTaGGTGAGCCGGGGCCGGCGGACTGCCGCTCGGCTC | + |
Preference number: 6 (lower is better) Translates to: DHLAQVPGTRCP*VSRGRRTAARL Trigger: GAGCCGAGCGGCAGTCCGCCGGCCCCGGCTCACTCACGGGCACCGTGTCCCGGGGACCTGCGCGAGATGATC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180353.2 |