RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SOX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096014

Ensembl transcript IDs: ENSMUST00000180353.2

Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TATCGAGAGCGCGGGGACCTCGGTACAAAGTCGGGCTCTGGAGGCTaGGGCGCAGGCCTCGCTCTTCGTCGCCGGGGCGCCGGCCTTAAG +
Preference number: 1 (lower is better)
Translates to: YRERGDLGTKSGSGG*GAGLALRRRGAGLK
Trigger: CTTAAGGCCGGCGCCCCGGCGACGAAGAGCGAGGCCTGCGCCCCAGCCTCCAGAGCCCGACTTTGTACCGAGGTCCCCGCGCTCTCGATA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR TCA 90 bp CTAAGAGGCCAGTCTGGTGTCAGCGCCTCGGAGTCCTGGGGAAGGTaGTGGGGGCAGATGTCACCTGGCGCTCGGCTCTCCAGAGCGGCC +
Preference number: 1 (lower is better)
Translates to: LRGQSGVSASESWGR*WGQMSPGARLSRAA
Trigger: GGCCGCTCTGGAGAGCCGAGCGCCAGGTGACATCTGCCCCCATCACCTTCCCCAGGACTCCGAGGCGCTGACACCAGACTGGCCTCTTAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR TCA 90 bp GAACTCCAGAAGCCCAGGCAAAACAGAGGTGAGTGTGGCCACCTTTaGTTCTCCCTAAATAAAGAGCAGGGTGGTGTTGGGGGCCAGTCT +
Preference number: 1 (lower is better)
Translates to: ELQKPRQNRGECGHL*FSLNKEQGGVGGQS
Trigger: AGACTGGCCCCCAACACCACCCTGCTCTTTATTTAGGGAGAATCAAAGGTGGCCACACTCACCTCTGTTTTGCCTGGGCTTCTGGAGTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR TCA 90 bp TATCCTTGGCCTTGTCCCACCACTGAGCACAACCCATCCTCCTTCTaGGACCCAGCTGCCTCAAAACTGCTACAGTATGCAAAAGGCAGA +
Preference number: 1 (lower is better)
Translates to: YPWPCPTTEHNPSSF*DPAASKLLQYAKGR
Trigger: TCTGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGGAGGATGGGTTGTGCTCAGTGGTGGGACAAGGCCAAGGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR GCA 90 bp CTGAGCACAACCCATCCTCCTTCTGAGACCCAGCTGCCTCAAAACTaGTACAGTATGCAAAAGGCAGAACCACAGGAAAGAAATGCAAAA +
Preference number: 1 (lower is better)
Translates to: LSTTHPPSETQLPQN*YSMQKAEPQERNAK
Trigger: TTTTGCATTTCTTTCCTGTGGTTCTGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGGAGGATGGGTTGTGCTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR TCA 90 bp TTTCTCCTTGTCTTTCACATCAGTAGAACCCAAAGGAAGGTGGCTTaGAAGCCTGGCACAAAGAGTTCTTGTTCACTGGGTAGAGCTCAA +
Preference number: 1 (lower is better)
Translates to: FLLVFHISRTQRKVA*KPGTKSSCSLGRAQ
Trigger: TTGAGCTCTACCCAGTGAACAAGAACTCTTTGTGCCAGGCTTTCAAGCCACCTTCCTTTGGGTTCTACTGATGTGAAAGACAAGGAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR-3UTR CCA 90 bp CCTTCTGAGACCCAGCTGCCTCAAAACTGCTACAGTATGCAAAAGGCAGAACCATACAAAGTCGGGCTCTaGAGGCTGGGGCGCAGGCCT +
Preference number: 2 (lower is better)
Translates to: PSETQLPQNCYSMQKAEPYKVGL*RLGRRP
Trigger: AGGCCTGCGCCCCAGCCTCCAGAGCCCGACTTTGTA...TGGTTCTGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR CAA 90 bp AAGTCACGGAAACGCTGCACTCCGCTTGGTGGGATTTCCTTACTCTaGGGCCCTGCAGATAATTTCTCCTCCAACAGATTGCTAATTGTA +
Preference number: 2 (lower is better)
Translates to: KSRKRCTPLGGISLL*GPADNFSSNRLLIV
Trigger: TACAATTAGCAATCTGTTGGAGGAGAAATTATCTGCAGGGCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTTTCCGTGACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR CAA 90 bp GGTGAGAGACTCTGTGGTGGTGAGGTCTGGGTCAGGATTGCTTCCTaGAAGCACAGGAAGATAATTTCACTTACAATTCCAATTACAGAG +
Preference number: 2 (lower is better)
Translates to: GERLCGGEVWVRIAS*KHRKIISLTIPITE
Trigger: CTCTGTAATTGGAATTGTAAGTGAAATTATCTTCCTGTGCTTCAAGGAAGCAATCCTGACCCAGACCTCACCACCACAGAGTCTCTCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR-3UTR CCA 90 bp GGGGTGTTCTTTTATTACCTCATCAGAAAGCAGTGGGCGTCATTCTTGAATCTCTTGGCATCGCCTCGCTaGGTTTTTGTCTTTTGTCCT +
Preference number: 2 (lower is better)
Translates to: GVFFYYLIRKQWASFLNLLASPR*VFVFCP
Trigger: AGGACAAAAGACAAAAACCCAGCGAGGCGATGCCAA...GAGATTCAAGAATGACGCCCACTGCTTTCTGATGAGGTAATAAAAGAACACCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR-3UTR CCA 90 bp GGGGTGTTCTTTTATTACCTCATCAGAAAGCAGTGGGCGTCATTCTTGAATCTCAAGTCCACTTTTGAATaGCTAGTCCATATTCATTCC +
Preference number: 2 (lower is better)
Translates to: GVFFYYLIRKQWASFLNLKSTFE*LVHIHS
Trigger: GGAATGAATATGGACTAGCCATTCAAAAGTGGACTT...GAGATTCAAGAATGACGCCCACTGCTTTCTGATGAGGTAATAAAAGAACACCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR-3UTR CCA 90 bp GTCAGGATTGCTTCCTTGAAGCACAGGAAGATAATTTCACTTACAATTCCAATTGGATTTCCTTACTCTTaGGCCCTGCAGATAATTTCT +
Preference number: 2 (lower is better)
Translates to: VRIASLKHRKIISLTIPIGFPYS*ALQIIS
Trigger: AGAAATTATCTGCAGGGCCCAAGAGTAAGGAAATCC...AATTGGAATTGTAAGTGAAATTATCTTCCTGTGCTTCAAGGAAGCAATCCTGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR CCA 72 bp CGCGGGGACCTCGGTACAAAGTCGGGCTCTGGAGGCTaGGGCGCAGGCCTCGCTCTTCGTCGCCGGGGCGCC +
Preference number: 3 (lower is better)
Translates to: RGDLGTKSGSGG*GAGLALRRRGA
Trigger: GGCGCCCCGGCGACGAAGAGCGAGGCCTGCGCCCCAGCCTCCAGAGCCCGACTTTGTACCGAGGTCCCCGCG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR CCA 72 bp TCGAGAGCGCGGGGACCTCGGTACAAAGTCGGGCTCTaGAGGCTGGGGCGCAGGCCTCGCTCTTCGTCGCCG +
Preference number: 3 (lower is better)
Translates to: SRARGPRYKVGL*RLGRRPRSSSP
Trigger: CGGCGACGAAGAGCGAGGCCTGCGCCCCAGCCTCCAGAGCCCGACTTTGTACCGAGGTCCCCGCGCTCTCGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR TCA 72 bp CAGTCTGGTGTCAGCGCCTCGGAGTCCTGGGGAAGGTaGTGGGGGCAGATGTCACCTGGCGCTCGGCTCTCC +
Preference number: 3 (lower is better)
Translates to: QSGVSASESWGR*WGQMSPGARLS
Trigger: GGAGAGCCGAGCGCCAGGTGACATCTGCCCCCATCACCTTCCCCAGGACTCCGAGGCGCTGACACCAGACTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR CCA 72 bp GCACGCTGTCTTGGCGGTGGCTGTTGTCCCTATCCTTaGCCTTGTCCCACCACTGAGCACAACCCATCCTCC +
Preference number: 3 (lower is better)
Translates to: ARCLGGGCCPYP*PCPTTEHNPSS
Trigger: GGAGGATGGGTTGTGCTCAGTGGTGGGACAAGGCCAAGGATAGGGACAACAGCCACCGCCAAGACAGCGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR TCA 72 bp TGGCTGTTGTCCCTATCCTTGGCCTTGTCCCACCACTaGGCACAACCCATCCTCCTTCTGAGACCCAGCTGC +
Preference number: 3 (lower is better)
Translates to: WLLSLSLALSHH*AQPILLLRPSC
Trigger: GCAGCTGGGTCTCAGAAGGAGGATGGGTTGTGCTCAGTGGTGGGACAAGGCCAAGGATAGGGACAACAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR CCA 72 bp TCCCAGAGAGGAATCGGGAGGGGATGGGATAAGACCTaGGTGAGAGACTCTGTGGTGGTGAGGTCTGGGTCA +
Preference number: 3 (lower is better)
Translates to: SQRGIGRGWDKT*VRDSVVVRSGS
Trigger: TGACCCAGACCTCACCACCACAGAGTCTCTCACCCAGGTCTTATCCCATCCCCTCCCGATTCCTCTCTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR TCA 72 bp CCTTGTCCCACCACTGAGCACAACCCATCCTCCTTCTaGGACCCAGCTGCCTCAAAACTGCTACAGTATGCA +
Preference number: 3 (lower is better)
Translates to: PCPTTEHNPSSF*DPAASKLLQYA
Trigger: TGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGGAGGATGGGTTGTGCTCAGTGGTGGGACAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR CCA 72 bp CATGAAAACACCAAAGTTCAGTCTAAGAGGCCAGTCTaGTGTCAGCGCCTCGGAGTCCTGGGGAAGGTGATG +
Preference number: 3 (lower is better)
Translates to: HENTKVQSKRPV*CQRLGVLGKVM
Trigger: CATCACCTTCCCCAGGACTCCGAGGCGCTGACACCAGACTGGCCTCTTAGACTGAACTTTGGTGTTTTCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR CCA 72 bp TATGTTGGATTTTCCCAGAGAGGAATCGGGAGGGGATaGGATAAGACCTGGGTGAGAGACTCTGTGGTGGTG +
Preference number: 3 (lower is better)
Translates to: YVGFSQRGIGRG*DKTWVRDSVVV
Trigger: CACCACCACAGAGTCTCTCACCCAGGTCTTATCCCATCCCCTCCCGATTCCTCTCTGGGAAAATCCAACATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR GCA 72 bp TTTCTCTTTCCCCACCGAATAAAGTCACGGAAACGCTaGACTCCGCTTGGTGGGATTTCCTTACTCTTGGGC +
Preference number: 3 (lower is better)
Translates to: FLFPHRIKSRKR*TPLGGISLLLG
Trigger: GCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTTTCCGTGACTTTATTCGGTGGGGAAAGAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR CCA 72 bp AACGCTGCACTCCGCTTGGTGGGATTTCCTTACTCTTaGGCCCTGCAGATAATTTCTCCTCCAACAGATTGC +
Preference number: 3 (lower is better)
Translates to: NAALRLVGFPYS*ALQIISPPTDC
Trigger: GCAATCTGTTGGAGGAGAAATTATCTGCAGGGCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR GCA 72 bp ACCCATCCTCCTTCTGAGACCCAGCTGCCTCAAAACTaGTACAGTATGCAAAAGGCAGAACCACAGGAAAGA +
Preference number: 3 (lower is better)
Translates to: THPPSETQLPQN*YSMQKAEPQER
Trigger: TCTTTCCTGTGGTTCTGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGGAGGATGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR GCA 72 bp AAACACAGCATTCTGTGTTTACATTCCCTGGCAATCTaGATCCCGGTTCACACAGGAGAGAGTGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: KHSILCLHSLAI*IPVHTGESVCV
Trigger: CACACACACACTCTCTCCTGTGTGAACCGGGATGCAGATTGCCAGGGAATGTAAACACAGAATGCTGTGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR CCA 72 bp GGAATGATAAACACAGCATTCTGTGTTTACATTCCCTaGCAATCTGCATCCCGGTTCACACAGGAGAGAGTG +
Preference number: 3 (lower is better)
Translates to: GMINTAFCVYIP*QSASRFTQERV
Trigger: CACTCTCTCCTGTGTGAACCGGGATGCAGATTGCCAGGGAATGTAAACACAGAATGCTGTGTTTATCATTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR-3UTR CAA 90 bp GGGGTGTTCTTTTATTACCTCATCAGAAAGCAGTGGGCGTCATTCTTGAATCTCGGGATTTCCTTACTCTaGGGCCCTGCAGATAATTTC +
Preference number: 3 (lower is better)
Translates to: GVFFYYLIRKQWASFLNLGISLL*GPADNF
Trigger: GAAATTATCTGCAGGGCCCAAGAGTAAGGAAATCCC...GAGATTCAAGAATGACGCCCACTGCTTTCTGATGAGGTAATAAAAGAACACCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR CCA 72 bp TCCTTGTCTTTCACATCAGTAGAACCCAAAGGAAGGTaGCTTGAAAGCCTGGCACAAAGAGTTCTTGTTCAC +
Preference number: 3 (lower is better)
Translates to: SLSFTSVEPKGR*LESLAQRVLVH
Trigger: GTGAACAAGAACTCTTTGTGCCAGGCTTTCAAGCCACCTTCCTTTGGGTTCTACTGATGTGAAAGACAAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR CCA 90 bp GCTGGGGCGCAGGCCTCGCTCTTCGTCGCCGGGGCGCCGGCCTTAAGCCGCAGTGATCCTGGTTGGCCTTaGTGCCCCCGCCGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: AGAQASLFVAGAPALSRSDPGWP*CPRRRR
Trigger: GCGGCGGCGGCGGGGGCACCAAGGCCAACCAGGATC...ACTGCGGCTTAAGGCCGGCGCCCCGGCGACGAAGAGCGAGGCCTGCGCCCCAGC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR GCA 90 bp CAGTCTAAGAGGCCAGTCTGGTGTCAGCGCCTCGGAGTCCTGGGGAAGGTGATGGCGCCGCCGGGCGAGTaGAGGTCGGTCTCCATCATC +
Preference number: 4 (lower is better)
Translates to: QSKRPVWCQRLGVLGKVMAPPGE*RSVSII
Trigger: GATGATGGAGACCGACCTGCACTCGCCCGGCGGCGC...CATCACCTTCCCCAGGACTCCGAGGCGCTGACACCAGACTGGCCTCTTAGACTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR CCA 90 bp GTGGCTGTTGTCCCTATCCTTGGCCTTGTCCCACCACTGAGCACAACCCATCCTGAGTGCAGCCGGCTTTaGGCCGCCGCAGCCGCTGCC +
Preference number: 4 (lower is better)
Translates to: VAVVPILGLVPPLSTTHPECSRL*AAAAAA
Trigger: GGCAGCGGCTGCGGCGGCCCAAAGCCGGCTGCACTC...AGGATGGGTTGTGCTCAGTGGTGGGACAAGGCCAAGGATAGGGACAACAGCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR TCA 90 bp CATCCTCCTTCTGAGACCCAGCTGCCTCAAAACTGCTACAGTATGCAAAAGGCACACGGTGCCCGTGAGTaGGCCGGGGCCGGCGGACTG +
Preference number: 4 (lower is better)
Translates to: HPPSETQLPQNCYSMQKAHGARE*AGAGGL
Trigger: CAGTCCGCCGGCCCCGGCTCACTCACGGGCACCGTG...TGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGGAGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR GCA 90 bp TCCGAAGCCGAGAAAACGCTGTGTGCCTCCTCTGCGGACGATAAATACTGTACATGCGGATGGTGCGGGTaGGGGTGCGCCGGGTGTGCG +
Preference number: 4 (lower is better)
Translates to: SEAEKTLCASSADDKYCTCGWCG*GCAGCA
Trigger: CGCACACCCGGCGCACCCGCACCCGCACCATCCGCA...TGTACAGTATTTATCGTCCGCAGAGGAGGCACACAGCGTTTTCTCGGCTTCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR CCA 90 bp CATCCTCCTTCTGAGACCCAGCTGCCTCAAAACTGCTACAGTATGCAAAAGGCAGTGCCTCCTGCATCATaGCCGCGGCCGCAGCCGCCG +
Preference number: 4 (lower is better)
Translates to: HPPSETQLPQNCYSMQKAVPPAS*PRPQPP
Trigger: CGGCGGCTGCGGCCGCGGCCATGATGCAGGAGGCAC...TGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGGAGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR CCA 90 bp GTGGCTGTTGTCCCTATCCTTGGCCTTGTCCCACCACTGAGCACAACCCATCCTTGTCGTAGCGGTGCATaGGCTGCGGGTTGTGAGGAT +
Preference number: 4 (lower is better)
Translates to: VAVVPILGLVPPLSTTHPCRSGA*AAGCED
Trigger: ATCCTCACAACCCGCAGCCCATGCACCGCTACGACA...AGGATGGGTTGTGCTCAGTGGTGGGACAAGGCCAAGGATAGGGACAACAGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR TCA 90 bp AACGCTGCACTCCGCTTGGTGGGATTTCCTTACTCTTGGGCCCTGCAGATAATTCGTTCATGGGCCGCTTaGCCCGATCCTGGTTGGCCT +
Preference number: 4 (lower is better)
Translates to: NAALRLVGFPYSWALQIIRSWAA*PDPGWP
Trigger: AGGCCAACCAGGATCGGGTCAAGCGGCCCATGAACG...AATTATCTGCAGGGCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR CCA 90 bp AACGCTGCACTCCGCTTGGTGGGATTTCCTTACTCTTGGGCCCTGCAGATAATTCCTGAGAGTTGGAGATaGGGCTGTACTGCAGCGCGC +
Preference number: 4 (lower is better)
Translates to: NAALRLVGFPYSWALQIIPESWR*GCTAAR
Trigger: GCGCGCTGCAGTACAGCCCCATCTCCAACTCTCAGG...AATTATCTGCAGGGCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR TCA 90 bp GGGGTGTTCTTTTATTACCTCATCAGAAAGCAGTGGGCGTCATTCTTGAATCTCTCTCGGCCTCGGACATaGCCTTCCACTCGGCCCCGA +
Preference number: 4 (lower is better)
Translates to: GVFFYYLIRKQWASFLNLSRPRT*PSTRPR
Trigger: TCGGGGCCGAGTGGAAGGTCATGTCCGAGGCCGAGA...GAGATTCAAGAATGACGCCCACTGCTTTCTGATGAGGTAATAAAAGAACACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR GCA 90 bp GGGGTGTTCTTTTATTACCTCATCAGAAAGCAGTGGGCGTCATTCTTGAATCTCCCCGTAGGCCAGCTGTaGCTCCTGCATCATGGCCGC +
Preference number: 4 (lower is better)
Translates to: GVFFYYLIRKQWASFLNLPVGQL*LLHHGR
Trigger: GCGGCCATGATGCAGGAGGCACAGCTGGCCTACGGG...GAGATTCAAGAATGACGCCCACTGCTTTCTGATGAGGTAATAAAAGAACACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR GCA 90 bp GGGGTGTTCTTTTATTACCTCATCAGAAAGCAGTGGGCGTCATTCTTGAATCTCGGGTGTTCCTTCATGTaGAGCGCGCGCAGTCTCTTG +
Preference number: 4 (lower is better)
Translates to: GVFFYYLIRKQWASFLNLGCSFM*SARSLL
Trigger: CAAGAGACTGCGCGCGCTGCACATGAAGGAACACCC...GAGATTCAAGAATGACGCCCACTGCTTTCTGATGAGGTAATAAAAGAACACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
3UTR CAA 72 bp AAACGCTGCACTCCGCTTGGTGGGATTTCCTTACTCTaGGGCCCTGCAGATAATTTCTCCTCCAACAGATTG +
Preference number: 4 (lower is better)
Translates to: KRCTPLGGISLL*GPADNFSSNRL
Trigger: CAATCTGTTGGAGGAGAAATTATCTGCAGGGCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR CCA 90 bp GTCAGGATTGCTTCCTTGAAGCACAGGAAGATAATTTCACTTACAATTCCAATTCGCTTGACCCGATCCTaGTTGGCCTTGGTGCCCCCG +
Preference number: 4 (lower is better)
Translates to: VRIASLKHRKIISLTIPIRLTRS*LALVPP
Trigger: CGGGGGCACCAAGGCCAACCAGGATCGGGTCAAGCG...AATTGGAATTGTAAGTGAAATTATCTTCCTGTGCTTCAAGGAAGCAATCCTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS CCA 90 bp CCGCCCCCGCCCGCCCCGGCCGGGCCCGAGAGGTTCGTGGGCGCCTaGGCGCCGCCGGGCGAGTGCAGGTCGGTCTCCATCATCATGCTG +
Preference number: 5 (lower is better)
Translates to: PPPPAPAGPERFVGA*APPGECRSVSIIML
Trigger: CAGCATGATGATGGAGACCGACCTGCACTCGCCCGGCGGCGCCCAGGCGCCCACGAACCTCTCGGGCCCGGCCGGGGCGGGCGGGGGCGG
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS CCA 90 bp GGGCACCGTGCCGTTGACGCCCGCGCCCGCGCCCTGGTAGTGCTGTaGCAGCGAGTGCAGCCGGCTTTGGGCCGCCGCAGCCGCTGCCGC +
Preference number: 5 (lower is better)
Translates to: GHRAVDARARALVVL*QRVQPALGRRSRCR
Trigger: GCGGCAGCGGCTGCGGCGGCCCAAAGCCGGCTGCACTCGCTGCCACAGCACTACCAGGGCGCGGGCGCGGGCGTCAACGGCACGGTGCCC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS TCA 90 bp CCCGTGAGTGAGCCGGGGCCGGCGGACTGCCGCTCGGCTCCGACTTaGCCAGAGATCCGAGGGCGCCCAGGGCCCCCGACGACGCGGCTG +
Preference number: 5 (lower is better)
Translates to: PVSEPGPADCRSAPT*PEIRGRPGPPTTRL
Trigger: CAGCCGCGTCGTCGGGGGCCCTGGGCGCCCTCGGATCTCTGGTCAAGTCGGAGCCGAGCGGCAGTCCGCCGGCCCCGGCTCACTCACGGG
77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR CAA 90 bp GCTGGGGCGCAGGCCTCGCTCTTCGTCGCCGGGGCGCCGGCCTTAAGCCGCAGTGCGTTCATGGGCCGCTaGACCCGATCCTGGTTGGCC +
Preference number: 5 (lower is better)
Translates to: AGAQASLFVAGAPALSRSAFMGR*TRSWLA
Trigger: GGCCAACCAGGATCGGGTCAAGCGGCCCATGAACGC...ACTGCGGCTTAAGGCCGGCGCCCCGGCGACGAAGAGCGAGGCCTGCGCCCCAGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR CAA 90 bp AACGCTGCACTCCGCTTGGTGGGATTTCCTTACTCTTGGGCCCTGCAGATAATTCGAGTGCAGCCGGCTTaGGGCCGCCGCAGCCGCTGC +
Preference number: 5 (lower is better)
Translates to: NAALRLVGFPYSWALQIIRVQPA*GRRSRC
Trigger: GCAGCGGCTGCGGCGGCCCAAAGCCGGCTGCACTCG...AATTATCTGCAGGGCCCAAGAGTAAGGAAATCCCACCAAGCGGAGTGCAGCGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS-3UTR CAA 90 bp CCTTCTGAGACCCAGCTGCCTCAAAACTGCTACAGTATGCAAAAGGCAGAACCACGATCCTGGTTGGCCTaGGTGCCCCCGCCGCCGCCG +
Preference number: 5 (lower is better)
Translates to: PSETQLPQNCYSMQKAEPRSWLA*VPPPPP
Trigger: CGGCGGCGGCGGGGGCACCAAGGCCAACCAGGATCG...TGGTTCTGCCTTTTGCATACTGTAGCAGTTTTGAGGCAGCTGGGTCTCAGAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS TCA 72 bp GAGCCGGGGCCGGCGGACTGCCGCTCGGCTCCGACTTaGCCAGAGATCCGAGGGCGCCCAGGGCCCCCGACG +
Preference number: 6 (lower is better)
Translates to: EPGPADCRSAPT*PEIRGRPGPPT
Trigger: CGTCGGGGGCCCTGGGCGCCCTCGGATCTCTGGTCAAGTCGGAGCCGAGCGGCAGTCCGCCGGCCCCGGCTC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS TCA 72 bp ATCTCGCGCAGGTCCCCGGGACACGGTGCCCGTGAGTaGGCCGGGGCCGGCGGACTGCCGCTCGGCTCCGAC +
Preference number: 6 (lower is better)
Translates to: ISRRSPGHGARE*AGAGGLPLGSD
Trigger: GTCGGAGCCGAGCGGCAGTCCGCCGGCCCCGGCTCACTCACGGGCACCGTGTCCCGGGGACCTGCGCGAGAT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS CCA 72 bp GCCGTTGACGCCCGCGCCCGCGCCCTGGTAGTGCTGTaGCAGCGAGTGCAGCCGGCTTTGGGCCGCCGCAGC +
Preference number: 6 (lower is better)
Translates to: AVDARARALVVL*QRVQPALGRRS
Trigger: GCTGCGGCGGCCCAAAGCCGGCTGCACTCGCTGCCACAGCACTACCAGGGCGCGGGCGCGGGCGTCAACGGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2
CDS TCA 72 bp GATCATCTCGCGCAGGTCCCCGGGACACGGTGCCCGTaGGTGAGCCGGGGCCGGCGGACTGCCGCTCGGCTC +
Preference number: 6 (lower is better)
Translates to: DHLAQVPGTRCP*VSRGRRTAARL
Trigger: GAGCCGAGCGGCAGTCCGCCGGCCCCGGCTCACTCACGGGCACCGTGTCCCGGGGACCTGCGCGAGATGATC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180353.2