RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SOWAHD (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044400

Ensembl transcript IDs: ENSMUST00000060057.2

Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTAGCTAGCTACAGGAGACCTGGGACAGGACTAGGGCCCCAGATGTaGTCAGTGTACCCACTGCATCAGAGGAGCATCTGCTTGGGTGGG +
Preference number: 1 (lower is better)
Translates to: LASYRRPGTGLGPQM*SVYPLHQRSICLGG
Trigger: CCCACCCAAGCAGATGCTCCTCTGATGCAGTGGGTACACTGACCACATCTGGGGCCCTAGTCCTGTCCCAGGTCTCCTGTAGCTAGCTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
3UTR-3UTR CCA 90 bp AATGTCCCAAGTCCCACAGTATTGGAGCTGGGTACCAGGGCCAGCCTGGTTCTTGAGCATCTGCTTGGGTaGGGTCAGGAACAACCTAAG +
Preference number: 2 (lower is better)
Translates to: NVPSPTVLELGTRASLVLEHLLG*GQEQPK
Trigger: CTTAGGTTGTTCCTGACCCCACCCAAGCAGATGCTC...AAGAACCAGGCTGGCCCTGGTACCCAGCTCCAATACTGTGGGACTTGGGACATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
3UTR-3UTR CAA 90 bp CGAGCCCCGTTCCAAATGTCCCAAGTCCCACAGTATTGGAGCTGGGTACCAGGGCAGAGGAGCATCTGCTaGGGTGGGGTCAGGAACAAC +
Preference number: 3 (lower is better)
Translates to: RAPFQMSQVPQYWSWVPGQRSIC*GGVRNN
Trigger: GTTGTTCCTGACCCCACCCAAGCAGATGCTCCTCTG...CCCTGGTACCCAGCTCCAATACTGTGGGACTTGGGACATTTGGAACGGGGCTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
3UTR CCA 72 bp TACAGGAGACCTGGGACAGGACTAGGGCCCCAGATGTaGTCAGTGTACCCACTGCATCAGAGGAGCATCTGC +
Preference number: 3 (lower is better)
Translates to: YRRPGTGLGPQM*SVYPLHQRSIC
Trigger: GCAGATGCTCCTCTGATGCAGTGGGTACACTGACCACATCTGGGGCCCTAGTCCTGTCCCAGGTCTCCTGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
3UTR CCA 72 bp CGAGCCCCGTTCCAAATGTCCCAAGTCCCACAGTATTaGAGCTGGGTACCAGGGCCAGCCTGGTTCTTTGGT +
Preference number: 3 (lower is better)
Translates to: RAPFQMSQVPQY*SWVPGPAWFFG
Trigger: ACCAAAGAACCAGGCTGGCCCTGGTACCCAGCTCCAATACTGTGGGACTTGGGACATTTGGAACGGGGCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
3UTR-3UTR CAA 90 bp TTTAGCCCTCCTTCTCTTCCAAGGAGGATCACGAGCCCCGTTCCAAATGTCCCAGGCCAGCCTGGTTCTTaGGTCTCTTTCTCTATTGAT +
Preference number: 3 (lower is better)
Translates to: FSPPSLPRRITSPVPNVPGQPGS*VSFSID
Trigger: ATCAATAGAGAAAGAGACCAAAGAACCAGGCTGGCC...TGGGACATTTGGAACGGGGCTCGTGATCCTCCTTGGAAGAGAAGGAGGGCTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
3UTR GCA 72 bp ATGTGGTCAGTGTACCCACTGCATCAGAGGAGCATCTaGTTGGGTGGGGTCAGGAACAACCTAAGAATGAGT +
Preference number: 3 (lower is better)
Translates to: MWSVYPLHQRSI*LGGVRNNLRMS
Trigger: ACTCATTCTTAGGTTGTTCCTGACCCCACCCAAGCAGATGCTCCTCTGATGCAGTGGGTACACTGACCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
3UTR TCA 72 bp GCCAGCCTGGTTCTTTGGTCTCTTTCTCTATTGATGTaGCAGTTAGCTAGCTACAGGAGACCTGGGACAGGA +
Preference number: 3 (lower is better)
Translates to: ASLVLWSLSLLM*QLASYRRPGTG
Trigger: TCCTGTCCCAGGTCTCCTGTAGCTAGCTAACTGTCACATCAATAGAGAAAGAGACCAAAGAACCAGGCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR TCA 90 bp AATGTCCCAAGTCCCACAGTATTGGAGCTGGGTACCAGGGCCAGCCTGGTTCTTCCAGGTGGAGTGGCGTaGGGCCACCGCTGCCAGGGG +
Preference number: 4 (lower is better)
Translates to: NVPSPTVLELGTRASLVLPGGVA*GHRCQG
Trigger: CCCCTGGCAGCGGTGGCCTCACGCCACTCCACCTGG...AAGAACCAGGCTGGCCCTGGTACCCAGCTCCAATACTGTGGGACTTGGGACATT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR GCA 90 bp GGGACAGGACTAGGGCCCCAGATGTGGTCAGTGTACCCACTGCATCAGAGGAGCGCCAGAATCCACGCGTaGTCCCGCGGCTCAAGGCAC +
Preference number: 4 (lower is better)
Translates to: GTGLGPQMWSVYPLHQRSARIHA*SRGSRH
Trigger: GTGCCTTGAGCCGCGGGAGCACGCGTGGATTCTGGC...GCTCCTCTGATGCAGTGGGTACACTGACCACATCTGGGGCCCTAGTCCTGTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR CCA 90 bp CTAGGGCCCCAGATGTGGTCAGTGTACCCACTGCATCAGAGGAGCATCTGCTTGCGTGGCGCCCGTGCTTaGCCAGCCAGTGCAGGACGC +
Preference number: 4 (lower is better)
Translates to: LGPQMWSVYPLHQRSICLRGARA*PASAGR
Trigger: GCGTCCTGCACTGGCTGGCCAAGCACGGGCGCCACG...CAAGCAGATGCTCCTCTGATGCAGTGGGTACACTGACCACATCTGGGGCCCTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR GCA 90 bp CCCGTTCCAAATGTCCCAAGTCCCACAGTATTGGAGCTGGGTACCAGGGCCAGCAATCTCCCACTCTTCTaGCCCGGACAGCTCCCGGAG +
Preference number: 4 (lower is better)
Translates to: PVPNVPSPTVLELGTRASNLPLF*PGQLPE
Trigger: CTCCGGGAGCTGTCCGGGGCAGAAGAGTGGGAGATT...GCTGGCCCTGGTACCCAGCTCCAATACTGTGGGACTTGGGACATTTGGAACGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR CCA 90 bp ACTGCATCAGAGGAGCATCTGCTTGGGTGGGGTCAGGAACAACCTAAGAATGAGAGCCGCCAGGTGGAGTaGCGTGAGGCCACCGCTGCC +
Preference number: 4 (lower is better)
Translates to: TASEEHLLGWGQEQPKNESRQVE*REATAA
Trigger: GGCAGCGGTGGCCTCACGCCACTCCACCTGGCGGCT...CTCATTCTTAGGTTGTTCCTGACCCCACCCAAGCAGATGCTCCTCTGATGCAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR TCA 90 bp GGACTAGGGCCCCAGATGTGGTCAGTGTACCCACTGCATCAGAGGAGCATCTGCGTACTCCCGTGGACTTaGTGCACGATGCACTTGGGG +
Preference number: 4 (lower is better)
Translates to: GLGPQMWSVYPLHQRSICVLPWT*CTMHLG
Trigger: CCCCAAGTGCATCGTGCATCAAGTCCACGGGAGTAC...GCAGATGCTCCTCTGATGCAGTGGGTACACTGACCACATCTGGGGCCCTAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR GCA 90 bp ACTGCATCAGAGGAGCATCTGCTTGGGTGGGGTCAGGAACAACCTAAGAATGAGTCCTCGTGGCGCCCGTaGTTGGCCAGCCAGTGCAGG +
Preference number: 4 (lower is better)
Translates to: TASEEHLLGWGQEQPKNESSWRP*LASQCR
Trigger: CCTGCACTGGCTGGCCAAGCACGGGCGCCACGAGGA...CTCATTCTTAGGTTGTTCCTGACCCCACCCAAGCAGATGCTCCTCTGATGCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR CCA 90 bp TGGTCAGTGTACCCACTGCATCAGAGGAGCATCTGCTTGGGTGGGGTCAGGAACAGAATGAGTTCCTCGTaGCGCCCGTGCTTGGCCAGC +
Preference number: 4 (lower is better)
Translates to: WSVYPLHQRSICLGGVRNRMSSS*RPCLAS
Trigger: GCTGGCCAAGCACGGGCGCCACGAGGAACTCATTCT...GTTCCTGACCCCACCCAAGCAGATGCTCCTCTGATGCAGTGGGTACACTGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR CCA 90 bp TGGTCAGTGTACCCACTGCATCAGAGGAGCATCTGCTTGGGTGGGGTCAGGAACGATGCACGATGCACTTaGGGTGCGTTTCAGCCACCG +
Preference number: 4 (lower is better)
Translates to: WSVYPLHQRSICLGGVRNDARCT*GAFQPP
Trigger: CGGTGGCTGAAACGCACCCCAAGTGCATCGTGCATC...GTTCCTGACCCCACCCAAGCAGATGCTCCTCTGATGCAGTGGGTACACTGACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
3UTR CAA 72 bp ACGAGCCCCGTTCCAAATGTCCCAAGTCCCACAGTATaGGAGCTGGGTACCAGGGCCAGCCTGGTTCTTTGG +
Preference number: 4 (lower is better)
Translates to: TSPVPNVPSPTV*ELGTRASLVLW
Trigger: CCAAAGAACCAGGCTGGCCCTGGTACCCAGCTCCAATACTGTGGGACTTGGGACATTTGGAACGGGGCTCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR GCA 90 bp CCCGTTCCAAATGTCCCAAGTCCCACAGTATTGGAGCTGGGTACCAGGGCCAGCGGACTTGATGCACGATaGACTTGGGGTGCGTTTCAG +
Preference number: 4 (lower is better)
Translates to: PVPNVPSPTVLELGTRASGLDAR*TWGAFQ
Trigger: CTGAAACGCACCCCAAGTGCATCGTGCATCAAGTCC...GCTGGCCCTGGTACCCAGCTCCAATACTGTGGGACTTGGGACATTTGGAACGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR CCA 90 bp TGCTTGGGTGGGGTCAGGAACAACCTAAGAATGAGTTCTCTAGTCCATGTCATCTGCAGAGCCGCCAGGTaGAGTGGCGTGAGGCCACCG +
Preference number: 4 (lower is better)
Translates to: CLGGVRNNLRMSSLVHVICRAAR*SGVRPP
Trigger: CGGTGGCCTCACGCCACTCCACCTGGCGGCTCTGCA...GATGACATGGACTAGAGAACTCATTCTTAGGTTGTTCCTGACCCCACCCAAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR TCA 90 bp AGGACTAGGGCCCCAGATGTGGTCAGTGTACCCACTGCATCAGAGGAGCATCTGAATCGTGCAATAGAATaGGTTCCTCGTGGCGCCCGT +
Preference number: 4 (lower is better)
Translates to: RTRAPDVVSVPTASEEHLNRAIE*VPRGAR
Trigger: ACGGGCGCCACGAGGAACTCATTCTATTGCACGATT...CAGATGCTCCTCTGATGCAGTGGGTACACTGACCACATCTGGGGCCCTAGTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR TCA 90 bp CCCGTTCCAAATGTCCCAAGTCCCACAGTATTGGAGCTGGGTACCAGGGCCAGCTCCTTCCTGGGTGCTTaGTGCCTTCTTCTCTTTGAC +
Preference number: 4 (lower is better)
Translates to: PVPNVPSPTVLELGTRASSFLGA*CLLLFD
Trigger: GTCAAAGAGAAGAAGGCATCAAGCACCCAGGAAGGA...GCTGGCCCTGGTACCCAGCTCCAATACTGTGGGACTTGGGACATTTGGAACGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR GCA 90 bp TGCTTGGGTGGGGTCAGGAACAACCTAAGAATGAGTTCTCTAGTCCATGTCATCCAAGGCACACTCGGCTaGTGCCCTGTCCGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: CLGGVRNNLRMSSLVHVIQGTLG*CPVRWS
Trigger: GCTCCAGCGGACAGGGCAGCAGCCGAGTGTGCCTTG...GATGACATGGACTAGAGAACTCATTCTTAGGTTGTTCCTGACCCCACCCAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR GCA 90 bp GTTCCAAATGTCCCAAGTCCCACAGTATTGGAGCTGGGTACCAGGGCCAGCCTGAGTGACAAGGTCGATTaGCACTGTGATCTCGACGCG +
Preference number: 4 (lower is better)
Translates to: VPNVPSPTVLELGTRASLSDKVD*HCDLDA
Trigger: CGCGTCGAGATCACAGTGGCAATCGACCTTGTCACT...CAGGCTGGCCCTGGTACCCAGCTCCAATACTGTGGGACTTGGGACATTTGGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR CCA 90 bp TGGTCAGTGTACCCACTGCATCAGAGGAGCATCTGCTTGGGTGGGGTCAGGAACTTGATGACCATATCATaGCCTTGCAGAGCCGCCAGG +
Preference number: 4 (lower is better)
Translates to: WSVYPLHQRSICLGGVRNLMTIS*PCRAAR
Trigger: CCTGGCGGCTCTGCAAGGCCATGATATGGTCATCAA...GTTCCTGACCCCACCCAAGCAGATGCTCCTCTGATGCAGTGGGTACACTGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR CCA 90 bp AATGTCCCAAGTCCCACAGTATTGGAGCTGGGTACCAGGGCCAGCCTGGTTCTTCGGCCTTGTCCTTCCTaGGTGCTTGATGCCTTCTTC +
Preference number: 4 (lower is better)
Translates to: NVPSPTVLELGTRASLVLRPCPS*VLDAFF
Trigger: GAAGAAGGCATCAAGCACCCAGGAAGGACAAGGCCG...AAGAACCAGGCTGGCCCTGGTACCCAGCTCCAATACTGTGGGACTTGGGACATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR GCA 90 bp ACTAGGGCCCCAGATGTGGTCAGTGTACCCACTGCATCAGAGGAGCATCTGCTTCTTGTCCTTCCTGGGTaGTTGATGCCTTCTTCTCTT +
Preference number: 4 (lower is better)
Translates to: TRAPDVVSVPTASEEHLLLVLPG*LMPSSL
Trigger: AAGAGAAGAAGGCATCAAGCACCCAGGAAGGACAAG...AAGCAGATGCTCCTCTGATGCAGTGGGTACACTGACCACATCTGGGGCCCTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR GCA 90 bp TGCTTGGGTGGGGTCAGGAACAACCTAAGAATGAGTTCTCTAGTCCATGTCATCACCATATCATGGCCTTaGAGAGCCGCCAGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: CLGGVRNNLRMSSLVHVITISWP*RAARWS
Trigger: ACTCCACCTGGCGGCTCTGCAAGGCCATGATATGGT...GATGACATGGACTAGAGAACTCATTCTTAGGTTGTTCCTGACCCCACCCAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
3UTR CAA 72 bp TGGTCAGTGTACCCACTGCATCAGAGGAGCATCTGCTaGGGTGGGGTCAGGAACAACCTAAGAATGAGTTCT +
Preference number: 4 (lower is better)
Translates to: WSVYPLHQRSIC*GGVRNNLRMSS
Trigger: AGAACTCATTCTTAGGTTGTTCCTGACCCCACCCAAGCAGATGCTCCTCTGATGCAGTGGGTACACTGACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CCA 90 bp CGTGCTCCCGCGGCTCAAGGCACACTCGGCTGCTGCCCTGTCCGCTaGAGCGGCGGGACCCAGGCACAGCGGGCTCCAAGTGCTCCTCCG +
Preference number: 5 (lower is better)
Translates to: RAPAAQGTLGCCPVR*SGGTQAQRAPSAPP
Trigger: CGGAGGAGCACTTGGAGCCCGCTGTGCCTGGGTCCCGCCGCTCCAGCGGACAGGGCAGCAGCCGAGTGTGCCTTGAGCCGCGGGAGCACG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS GCA 90 bp CAGCCCCAGCAGCTCCCGCAACTCCCCACGCCGGCGCGCCCAGCTTaGCCCGCTCACGGTCAGGGCGCTGTGGAAGATTCGCTCCTGGGA +
Preference number: 5 (lower is better)
Translates to: QPQQLPQLPTPARPA*PAHGQGAVEDSLLG
Trigger: TCCCAGGAGCGAATCTTCCACAGCGCCCTGACCGTGAGCGGGGCAAGCTGGGCGCGCCGGCGTGGGGAGTTGCGGGAGCTGCTGGGGCTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS GCA 90 bp AGCAGCACTTCAAAACGGCACTCGGCAGCCGCCAGAATCCACGCGTaGTCCCGCGGCTCAAGGCACACTCGGCTGCTGCCCTGTCCGCTG +
Preference number: 5 (lower is better)
Translates to: SSTSKRHSAAARIHA*SRGSRHTRLLPCPL
Trigger: CAGCGGACAGGGCAGCAGCCGAGTGTGCCTTGAGCCGCGGGAGCACGCGTGGATTCTGGCGGCTGCCGAGTGCCGTTTTGAAGTGCTGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS GCA 90 bp GCACCCAGGGCTCCCACCAGCACCTTGATGACCATATCATGGCCTTaGAGAGCCGCCAGGTGGAGTGGCGTGAGGCCACCGCTGCCAGGG +
Preference number: 5 (lower is better)
Translates to: APRAPTSTLMTISWP*RAARWSGVRPPLPG
Trigger: CCCTGGCAGCGGTGGCCTCACGCCACTCCACCTGGCGGCTCTGCAAGGCCATGATATGGTCATCAAGGTGCTGGTGGGAGCCCTGGGTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CCA 90 bp GGGTCAGCACCCAGGGCTCCCACCAGCACCTTGATGACCATATCATaGCCTTGCAGAGCCGCCAGGTGGAGTGGCGTGAGGCCACCGCTG +
Preference number: 5 (lower is better)
Translates to: GSAPRAPTSTLMTIS*PCRAARWSGVRPPL
Trigger: CAGCGGTGGCCTCACGCCACTCCACCTGGCGGCTCTGCAAGGCCATGATATGGTCATCAAGGTGCTGGTGGGAGCCCTGGGTGCTGACCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CCA 90 bp CACCTTGATGACCATATCATGGCCTTGCAGAGCCGCCAGGTGGAGTaGCGTGAGGCCACCGCTGCCAGGGGCGCTCACATCAAACGGCAG +
Preference number: 5 (lower is better)
Translates to: HLDDHIMALQSRQVE*REATAARGAHIKRQ
Trigger: CTGCCGTTTGATGTGAGCGCCCCTGGCAGCGGTGGCCTCACGCCACTCCACCTGGCGGCTCTGCAAGGCCATGATATGGTCATCAAGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CCA 90 bp ACCAGCACCTTGATGACCATATCATGGCCTTGCAGAGCCGCCAGGTaGAGTGGCGTGAGGCCACCGCTGCCAGGGGCGCTCACATCAAAC +
Preference number: 5 (lower is better)
Translates to: TSTLMTISWPCRAAR*SGVRPPLPGALTSN
Trigger: GTTTGATGTGAGCGCCCCTGGCAGCGGTGGCCTCACGCCACTCCACCTGGCGGCTCTGCAAGGCCATGATATGGTCATCAAGGTGCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS GCA 90 bp GGAGGTTCAGAGATGCATCGGGCCGCAGATAGTGACAAGGTCGATTaGCACTGTGATCTCGACGCGAGGGGTCAGCACCCAGGGCTCCCA +
Preference number: 5 (lower is better)
Translates to: GGSEMHRAADSDKVD*HCDLDARGQHPGLP
Trigger: TGGGAGCCCTGGGTGCTGACCCCTCGCGTCGAGATCACAGTGGCAATCGACCTTGTCACTATCTGCGGCCCGATGCATCTCTGAACCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS GCA 90 bp GTTAGCGTTTTCGCGCTTCCTGTCGCGTTCAATCTCCCACTCTTCTaGCCCGGACAGCTCCCGGAGGTTCAGAGATGCATCGGGCCGCAG +
Preference number: 5 (lower is better)
Translates to: VSVFALPVAFNLPLF*PGQLPEVQRCIGPQ
Trigger: CTGCGGCCCGATGCATCTCTGAACCTCCGGGAGCTGTCCGGGGCAGAAGAGTGGGAGATTGAACGCGACAGGAAGCGCGAAAACGCTAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR CAA 90 bp GTTCCAAATGTCCCAAGTCCCACAGTATTGGAGCTGGGTACCAGGGCCAGCCTGGACCATATCATGGCCTaGCAGAGCCGCCAGGTGGAG +
Preference number: 5 (lower is better)
Translates to: VPNVPSPTVLELGTRASLDHIMA*QSRQVE
Trigger: CTCCACCTGGCGGCTCTGCAAGGCCATGATATGGTC...CAGGCTGGCCCTGGTACCCAGCTCCAATACTGTGGGACTTGGGACATTTGGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS GCA 90 bp AATCTCCCACTCTTCTGCCCCGGACAGCTCCCGGAGGTTCAGAGATaGATCGGGCCGCAGATAGTGACAAGGTCGATTGCCACTGTGATC +
Preference number: 5 (lower is better)
Translates to: NLPLFCPGQLPEVQR*IGPQIVTRSIATVI
Trigger: GATCACAGTGGCAATCGACCTTGTCACTATCTGCGGCCCGATGCATCTCTGAACCTCCGGGAGCTGTCCGGGGCAGAAGAGTGGGAGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR CAA 90 bp ACTGCATCAGAGGAGCATCTGCTTGGGTGGGGTCAGGAACAACCTAAGAATGAGCGCTCCTGGGACAGGTaGGCACTGTCCCTGACGGCT +
Preference number: 5 (lower is better)
Translates to: TASEEHLLGWGQEQPKNERSWDR*ALSLTA
Trigger: AGCCGTCAGGGACAGTGCCAACCTGTCCCAGGAGCG...CTCATTCTTAGGTTGTTCCTGACCCCACCCAAGCAGATGCTCCTCTGATGCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS-3UTR CAA 90 bp CAGAGGAGCATCTGCTTGGGTGGGGTCAGGAACAACCTAAGAATGAGTTCTCTAGCTCCCACCAGCACCTaGATGACCATATCATGGCCT +
Preference number: 5 (lower is better)
Translates to: QRSICLGGVRNNLRMSSLAPTST*MTISWP
Trigger: AGGCCATGATATGGTCATCAAGGTGCTGGTGGGAGC...TAGAGAACTCATTCTTAGGTTGTTCCTGACCCCACCCAAGCAGATGCTCCTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS GCA 72 bp CTGGAGCGGCGGGACCCAGGCACAGCGGGCTCCAAGTaGTCCTCCGACAGCCACCCGGCGGGAGCCGCCCCC +
Preference number: 6 (lower is better)
Translates to: LERRDPGTAGSK*SSDSHPAGAAP
Trigger: GGGGGCGGCTCCCGCCGGGTGGCTGTCGGAGGAGCACTTGGAGCCCGCTGTGCCTGGGTCCCGCCGCTCCAG
78% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS GCA 72 bp TCCACGCGTGCTCCCGCGGCTCAAGGCACACTCGGCTaGTGCCCTGTCCGCTGGAGCGGCGGGACCCAGGCA +
Preference number: 6 (lower is better)
Translates to: STRAPAAQGTLG*CPVRWSGGTQA
Trigger: TGCCTGGGTCCCGCCGCTCCAGCGGACAGGGCAGCAGCCGAGTGTGCCTTGAGCCGCGGGAGCACGCGTGGA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CCA 72 bp GCGGCTCAAGGCACACTCGGCTGCTGCCCTGTCCGCTaGAGCGGCGGGACCCAGGCACAGCGGGCTCCAAGT +
Preference number: 6 (lower is better)
Translates to: AAQGTLGCCPVR*SGGTQAQRAPS
Trigger: ACTTGGAGCCCGCTGTGCCTGGGTCCCGCCGCTCCAGCGGACAGGGCAGCAGCCGAGTGTGCCTTGAGCCGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS GCA 72 bp TCAAAACGGCACTCGGCAGCCGCCAGAATCCACGCGTaGTCCCGCGGCTCAAGGCACACTCGGCTGCTGCCC +
Preference number: 6 (lower is better)
Translates to: SKRHSAAARIHA*SRGSRHTRLLP
Trigger: GGGCAGCAGCCGAGTGTGCCTTGAGCCGCGGGAGCACGCGTGGATTCTGGCGGCTGCCGAGTGCCGTTTTGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CCA 72 bp GACCATATCATGGCCTTGCAGAGCCGCCAGGTGGAGTaGCGTGAGGCCACCGCTGCCAGGGGCGCTCACATC +
Preference number: 6 (lower is better)
Translates to: DHIMALQSRQVE*REATAARGAHI
Trigger: GATGTGAGCGCCCCTGGCAGCGGTGGCCTCACGCCACTCCACCTGGCGGCTCTGCAAGGCCATGATATGGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CAA 90 bp AGCACCCAGGGCTCCCACCAGCACCTTGATGACCATATCATGGCCTaGCAGAGCCGCCAGGTGGAGTGGCGTGAGGCCACCGCTGCCAGG +
Preference number: 6 (lower is better)
Translates to: STQGSHQHLDDHIMA*QSRQVEWREATAAR
Trigger: CCTGGCAGCGGTGGCCTCACGCCACTCCACCTGGCGGCTCTGCAAGGCCATGATATGGTCATCAAGGTGCTGGTGGGAGCCCTGGGTGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CAA 72 bp CGCGAGGGGTCAGCACCCAGGGCTCCCACCAGCACCTaGATGACCATATCATGGCCTTGCAGAGCCGCCAGG +
Preference number: 6 (lower is better)
Translates to: REGSAPRAPTST*MTISWPCRAAR
Trigger: CCTGGCGGCTCTGCAAGGCCATGATATGGTCATCAAGGTGCTGGTGGGAGCCCTGGGTGCTGACCCCTCGCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS GCA 72 bp GCTCCCACCAGCACCTTGATGACCATATCATGGCCTTaGAGAGCCGCCAGGTGGAGTGGCGTGAGGCCACCG +
Preference number: 6 (lower is better)
Translates to: APTSTLMTISWP*RAARWSGVRPP
Trigger: CGGTGGCCTCACGCCACTCCACCTGGCGGCTCTGCAAGGCCATGATATGGTCATCAAGGTGCTGGTGGGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CCA 72 bp CCCAGGGCTCCCACCAGCACCTTGATGACCATATCATaGCCTTGCAGAGCCGCCAGGTGGAGTGGCGTGAGG +
Preference number: 6 (lower is better)
Translates to: PRAPTSTLMTIS*PCRAARWSGVR
Trigger: CCTCACGCCACTCCACCTGGCGGCTCTGCAAGGCCATGATATGGTCATCAAGGTGCTGGTGGGAGCCCTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS TCA 72 bp GCAGTCCCCGGCGCCTGGCAAAATCGTGCAATAGAATaGGTTCCTCGTGGCGCCCGTGCTTGGCCAGCCAGT +
Preference number: 6 (lower is better)
Translates to: AVPGAWQNRAIE*VPRGARAWPAS
Trigger: ACTGGCTGGCCAAGCACGGGCGCCACGAGGAACTCATTCTATTGCACGATTTTGCCAGGCGCCGGGGACTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CCA 72 bp CCGCTCACGGTCAGGGCGCTGTGGAAGATTCGCTCCTaGGACAGGTTGGCACTGTCCCTGACGGCTTGTACT +
Preference number: 6 (lower is better)
Translates to: PLTVRALWKIRS*DRLALSLTACT
Trigger: AGTACAAGCCGTCAGGGACAGTGCCAACCTGTCCCAGGAGCGAATCTTCCACAGCGCCCTGACCGTGAGCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CCA 72 bp CGCCTGGCAAAATCGTGCAATAGAATGAGTTCCTCGTaGCGCCCGTGCTTGGCCAGCCAGTGCAGGACGCTG +
Preference number: 6 (lower is better)
Translates to: RLAKSCNRMSSS*RPCLASQCRTL
Trigger: CAGCGTCCTGCACTGGCTGGCCAAGCACGGGCGCCACGAGGAACTCATTCTATTGCACGATTTTGCCAGGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS GCA 72 bp GAGATGCATCGGGCCGCAGATAGTGACAAGGTCGATTaGCACTGTGATCTCGACGCGAGGGGTCAGCACCCA +
Preference number: 6 (lower is better)
Translates to: EMHRAADSDKVD*HCDLDARGQHP
Trigger: TGGGTGCTGACCCCTCGCGTCGAGATCACAGTGGCAATCGACCTTGTCACTATCTGCGGCCCGATGCATCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS GCA 72 bp TTCGCGCTTCCTGTCGCGTTCAATCTCCCACTCTTCTaGCCCGGACAGCTCCCGGAGGTTCAGAGATGCATC +
Preference number: 6 (lower is better)
Translates to: FALPVAFNLPLF*PGQLPEVQRCI
Trigger: GATGCATCTCTGAACCTCCGGGAGCTGTCCGGGGCAGAAGAGTGGGAGATTGAACGCGACAGGAAGCGCGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS GCA 72 bp ACATCAAACGGCAGTCCCCGGCGCCTGGCAAAATCGTaGAATAGAATGAGTTCCTCGTGGCGCCCGTGCTTG +
Preference number: 6 (lower is better)
Translates to: TSNGSPRRLAKS*NRMSSSWRPCL
Trigger: CAAGCACGGGCGCCACGAGGAACTCATTCTATTGCACGATTTTGCCAGGCGCCGGGGACTGCCGTTTGATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CAA 72 bp GTCAGGGCGCTGTGGAAGATTCGCTCCTGGGACAGGTaGGCACTGTCCCTGACGGCTTGTACTTTGTACCTG +
Preference number: 6 (lower is better)
Translates to: VRALWKIRSWDR*ALSLTACTLYL
Trigger: CAGGTACAAAGTACAAGCCGTCAGGGACAGTGCCAACCTGTCCCAGGAGCGAATCTTCCACAGCGCCCTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CAA 90 bp AGCCACCGAGAGGTGGTGGTAGTAGTGGTGGTAGTGCGGCTGCTGTaGTTGTTAGCGTTTTCGCGCTTCCTGTCGCGTTCAATCTCCCAC +
Preference number: 6 (lower is better)
Translates to: SHREVVVVVVVVRLL*LLAFSRFLSRSISH
Trigger: GTGGGAGATTGAACGCGACAGGAAGCGCGAAAACGCTAACAACAACAGCAGCCGCACTACCACCACTACTACCACCACCTCTCGGTGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS TCA 72 bp GCTGAGACGCCTCTTTGTAGTGTACTCCCGTGGACTTaGTGCACGATGCACTTGGGGTGCGTTTCAGCCACC +
Preference number: 6 (lower is better)
Translates to: AETPLCSVLPWT*CTMHLGCVSAT
Trigger: GGTGGCTGAAACGCACCCCAAGTGCATCGTGCATCAAGTCCACGGGAGTACACTACAAAGAGGCGTCTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CAA 90 bp CACCGAGAGGTGGTGGTAGTAGTGGTGGTAGTGCGGCTGCTGTTGTaGTTAGCGTTTTCGCGCTTCCTGTCGCGTTCAATCTCCCACTCT +
Preference number: 6 (lower is better)
Translates to: HREVVVVVVVVRLLL*LAFSRFLSRSISHS
Trigger: AGAGTGGGAGATTGAACGCGACAGGAAGCGCGAAAACGCTAACAACAACAGCAGCCGCACTACCACCACTACTACCACCACCTCTCGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CAA 72 bp TCGCTCCTGGGACAGGTTGGCACTGTCCCTGACGGCTaGTACTTTGTACCTGCCAAGGCAATGGTTGTCCTT +
Preference number: 6 (lower is better)
Translates to: SLLGQVGTVPDG*YFVPAKAMVVL
Trigger: AAGGACAACCATTGCCTTGGCAGGTACAAAGTACAAGCCGTCAGGGACAGTGCCAACCTGTCCCAGGAGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2
CDS CAA 72 bp TGGGACAGGTTGGCACTGTCCCTGACGGCTTGTACTTaGTACCTGCCAAGGCAATGGTTGTCCTTGATCTGC +
Preference number: 6 (lower is better)
Translates to: WDRLALSLTACT*YLPRQWLSLIC
Trigger: GCAGATCAAGGACAACCATTGCCTTGGCAGGTACAAAGTACAAGCCGTCAGGGACAGTGCCAACCTGTCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060057.2