RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SOWAHB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045314

Ensembl transcript IDs: ENSMUST00000061328.6

Found 209 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGGCACTGCCTCAGAAAATACTGTGCCTTCCTGTGCCCTGACCCCTaGCTGGCTCAGGAGAGAGAGGAACCCTTCGCAGGCTTGAGTGCC +
Preference number: 1 (lower is better)
Translates to: WHCLRKYCAFLCPDP*LAQEREEPFAGLSA
Trigger: GGCACTCAAGCCTGCGAAGGGTTCCTCTCTCTCCTGAGCCAGCCAGGGGTCAGGGCACAGGAAGGCACAGTATTTTCTGAGGCAGTGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR GCA 90 bp CCCTTTGACGCGTCCTTTCCCTTTCTAGTAAGGCCTGGCTGGCACTaGCTCAGAAAATACTGTGCCTTCCTGTGCCCTGACCCCTGGCTG +
Preference number: 1 (lower is better)
Translates to: PFDASFPFLVRPGWH*LRKYCAFLCPDPWL
Trigger: CAGCCAGGGGTCAGGGCACAGGAAGGCACAGTATTTTCTGAGGCAGTGCCAGCCAGGCCTTACTAGAAAGGGAAAGGACGCGTCAAAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR CCA 90 bp TTGCCTCCCTTTGACGCGTCCTTTCCCTTTCTAGTAAGGCCTGGCTaGCACTGCCTCAGAAAATACTGTGCCTTCCTGTGCCCTGACCCC +
Preference number: 1 (lower is better)
Translates to: LPPFDASFPFLVRPG*HCLRKYCAFLCPDP
Trigger: GGGGTCAGGGCACAGGAAGGCACAGTATTTTCTGAGGCAGTGCCAGCCAGGCCTTACTAGAAAGGGAAAGGACGCGTCAAAGGGAGGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR TCA 90 bp ACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCTTCCTaGGAACCGAACGGGACACTTCCTGTTAGACATTCAGTACTTCAG +
Preference number: 1 (lower is better)
Translates to: TESPSARDLQGLASS*EPNGTLPVRHSVLQ
Trigger: CTGAAGTACTGAATGTCTAACAGGAAGTGTCCCGTTCGGTTCTCAGGAAGAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR CCA 90 bp AACAGTTTCTGTTTCCCTTGGGTTCTCTCCACCTACTTAGTAGCTTaGGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG +
Preference number: 1 (lower is better)
Translates to: NSFCFPWVLSTYLVA*GVCVCVCVCVCVCV
Trigger: CACACACACACACACACACACACACACACACACACACACTCCCCAAGCTACTAAGTAGGTGGAGAGAACCCAAGGGAAACAGAAACTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR CCA 90 bp TTTCCAGCCCTCTTTGGATTTACATTCAGAATTTACACATTCTCCTaGGGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGC +
Preference number: 1 (lower is better)
Translates to: FPALFGFTFRIYTFS*GHRVTFSQGPARIS
Trigger: GCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACCCCAGGAGAATGTGTAAATTCTGAATGTAAATCCAAAGAGGGCTGGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR TCA 90 bp TTTACACCAAGCACTGTAGACGATGCTCGCAGGAAGGTGCAGGACTaGGGAAATCTCTTCAGTCAGATGTTACACTCTCCAGCAACAATT +
Preference number: 1 (lower is better)
Translates to: FTPSTVDDARRKVQD*GNLFSQMLHSPATI
Trigger: AATTGTTGCTGGAGAGTGTAACATCTGACTGAAGAGATTTCCTCAGTCCTGCACCTTCCTGCGAGCATCGTCTACAGTGCTTGGTGTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR GCA 90 bp CCCTGCAGGATGAAGAGTTTCAGTCATAACACAGATGAACTAAAATaGGTTTCCTCTTGGAAAGCTCACTTTGAGTTGGTACAAAAACAA +
Preference number: 1 (lower is better)
Translates to: PCRMKSFSHNTDELK*VSSWKAHFELVQKQ
Trigger: TTGTTTTTGTACCAACTCAAAGTGAGCTTTCCAAGAGGAAACGCATTTTAGTTCATCTGTGTTATGACTGAAACTCTTCATCCTGCAGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR CCA 90 bp AAGAGTTTCAGTCATAACACAGATGAACTAAAATGCGTTTCCTCTTaGAAAGCTCACTTTGAGTTGGTACAAAAACAAACAACAGCAAAA +
Preference number: 1 (lower is better)
Translates to: KSFSHNTDELKCVSS*KAHFELVQKQTTAK
Trigger: TTTTGCTGTTGTTTGTTTTTGTACCAACTCAAAGTGAGCTTTCCAAGAGGAAACGCATTTTAGTTCATCTGTGTTATGACTGAAACTCTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR GCA 90 bp GGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCTTCCTGAGAGTGTGTGCGCGCGCATaGGTGCGCCTCTTGGAGAAA +
Preference number: 2 (lower is better)
Translates to: GHRVTFSQGPARISLFLRVCARA*VRLLEK
Trigger: TTTCTCCAAGAGGCGCACGCATGCGCGCGCACACAC...TCTCAGGAAGAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR CCA 90 bp TGCCTCAGAAAATACTGTGCCTTCCTGTGCCCTGACCCCTGGCTGGCTCAGGAGAGTTTCTGTTTCCCTTaGGTTCTCTCCACCTACTTA +
Preference number: 2 (lower is better)
Translates to: CLRKYCAFLCPDPWLAQESFCFP*VLSTYL
Trigger: TAAGTAGGTGGAGAGAACCCAAGGGAAACAGAAACT...CTCCTGAGCCAGCCAGGGGTCAGGGCACAGGAAGGCACAGTATTTTCTGAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR CCA 90 bp TTCTCCTGGGGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCCATCTGACTTCAAACTaGTGCTTTCCACTCAGCCAA +
Preference number: 2 (lower is better)
Translates to: FSWGHRVTFSQGPARISLHLTSN*CFPLSQ
Trigger: TTGGCTGAGTGGAAAGCACCAGTTTGAAGTCAGATG...GAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACCCCAGGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR TCA 90 bp TGCCTCAGAAAATACTGTGCCTTCCTGTGCCCTGACCCCTGGCTGGCTCAGGAGTTCAAGAAATTGAGATaGCCCTTGAGGACACCATTT +
Preference number: 2 (lower is better)
Translates to: CLRKYCAFLCPDPWLAQEFKKLR*PLRTPF
Trigger: AAATGGTGTCCTCAAGGGTCATCTCAATTTCTTGAA...CTCCTGAGCCAGCCAGGGGTCAGGGCACAGGAAGGCACAGTATTTTCTGAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR GCA 90 bp GGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCTTCCTGAGATTCACTGGCTGGACTTaGCAAAAGGCACATAAAGAA +
Preference number: 2 (lower is better)
Translates to: GHRVTFSQGPARISLFLRFTGWT*QKAHKE
Trigger: TTCTTTATGTGCCTTTTGGCAAGTCCAGCCAGTGAA...TCTCAGGAAGAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR CCA 90 bp TTATACTTAGCAGCTTCACAAAGTTCTGATGCTTTTAACACTTACTGCTTCCCCCTGTGCCCTGACCCCTaGCTGGCTCAGGAGAGAGAG +
Preference number: 2 (lower is better)
Translates to: LYLAASQSSDAFNTYCFPLCPDP*LAQERE
Trigger: CTCTCTCTCCTGAGCCAGCCAGGGGTCAGGGCACAG...GGGGAAGCAGTAAGTGTTAAAAGCATCAGAACTTTGTGAAGCTGCTAAGTATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR CCA 90 bp GGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCTTCCTGAGATTTTATTTCACTGGCTaGACTTGCCAAAAGGCACAT +
Preference number: 2 (lower is better)
Translates to: GHRVTFSQGPARISLFLRFYFTG*TCQKAH
Trigger: ATGTGCCTTTTGGCAAGTCCAGCCAGTGAAATAAAA...TCTCAGGAAGAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR CCA 90 bp GGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCTTCCTGAGAACAATTTTATTTCACTaGCTGGACTTGCCAAAAGGC +
Preference number: 2 (lower is better)
Translates to: GHRVTFSQGPARISLFLRTILFH*LDLPKG
Trigger: GCCTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGT...TCTCAGGAAGAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR GCA 90 bp ATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGGCGGCACTTCCATGAATTaGCTCCCTTTGACGCGTCCT +
Preference number: 2 (lower is better)
Translates to: MLHSPATILFHWLDLPKGGTSMN*LPLTRP
Trigger: AGGACGCGTCAAAGGGAGGCAATTCATGGAAGTGCC...GCCTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR CCA 90 bp GGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCTTCCTGAGAAAGCTCACTTTGAGTTaGTACAAAAACAAACAACAG +
Preference number: 2 (lower is better)
Translates to: GHRVTFSQGPARISLFLRKLTLS*YKNKQQ
Trigger: CTGTTGTTTGTTTTTGTACCAACTCAAAGTGAGCTT...TCTCAGGAAGAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR CCA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGTGCCTGGATCAGCTTTaGTCCACATTTCACAGTCCA +
Preference number: 2 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKCLDQL*STFHSP
Trigger: TGGACTGTGAAATGTGGACCAAAGCTGATCCAGGCA...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR CCA 90 bp GGAAAGCTCACTTTGAGTTGGTACAAAAACAAACAACAGCAAAAACAAACAGAAACCTACTTAGTAGCTTaGGGAGTGTGTGTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: GKLTLSWYKNKQQQKQTETYLVA*GVCVCV
Trigger: CACACACACACACACTCCCCAAGCTACTAAGTAGGT...TTCTGTTTGTTTTTGCTGTTGTTTGTTTTTGTACCAACTCAAAGTGAGCTTTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR CCA 72 bp CTCAGAAAATACTGTGCCTTCCTGTGCCCTGACCCCTaGCTGGCTCAGGAGAGAGAGGAACCCTTCGCAGGC +
Preference number: 3 (lower is better)
Translates to: LRKYCAFLCPDP*LAQEREEPFAG
Trigger: GCCTGCGAAGGGTTCCTCTCTCTCCTGAGCCAGCCAGGGGTCAGGGCACAGGAAGGCACAGTATTTTCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR TCA 72 bp GGCTGGCTCAGGAGAGAGAGGAACCCTTCGCAGGCTTaGGTGCCTGGATCAGCTTTGGTCCACATTTCACAG +
Preference number: 3 (lower is better)
Translates to: GWLRRERNPSQA*VPGSALVHISQ
Trigger: CTGTGAAATGTGGACCAAAGCTGATCCAGGCACTCAAGCCTGCGAAGGGTTCCTCTCTCTCCTGAGCCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR GCA 72 bp GGCTCAGGAGAGAGAGGAACCCTTCGCAGGCTTGAGTaGCTGGATCAGCTTTGGTCCACATTTCACAGTCCA +
Preference number: 3 (lower is better)
Translates to: GSGERGTLRRLE*LDQLWSTFHSP
Trigger: TGGACTGTGAAATGTGGACCAAAGCTGATCCAGGCACTCAAGCCTGCGAAGGGTTCCTCTCTCTCCTGAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR GCA 72 bp GCGTCCTTTCCCTTTCTAGTAAGGCCTGGCTGGCACTaGCTCAGAAAATACTGTGCCTTCCTGTGCCCTGAC +
Preference number: 3 (lower is better)
Translates to: ASFPFLVRPGWH*LRKYCAFLCPD
Trigger: GTCAGGGCACAGGAAGGCACAGTATTTTCTGAGGCAGTGCCAGCCAGGCCTTACTAGAAAGGGAAAGGACGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR CCA 72 bp TTTGACGCGTCCTTTCCCTTTCTAGTAAGGCCTGGCTaGCACTGCCTCAGAAAATACTGTGCCTTCCTGTGC +
Preference number: 3 (lower is better)
Translates to: FDASFPFLVRPG*HCLRKYCAFLC
Trigger: GCACAGGAAGGCACAGTATTTTCTGAGGCAGTGCCAGCCAGGCCTTACTAGAAAGGGAAAGGACGCGTCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR CAA 90 bp GGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCTTCCTGAGACAGTTTCTGTTTCCCTaGGGTTCTCTCCACCTACTT +
Preference number: 3 (lower is better)
Translates to: GHRVTFSQGPARISLFLRQFLFP*GSLHLL
Trigger: AAGTAGGTGGAGAGAACCCAAGGGAAACAGAAACTG...TCTCAGGAAGAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR TCA 72 bp ACTTTGATCTTCAGACATGTGGAACGCTGTCAGAGATaGCCCTGCTTGCTACACATGGAGTTTCCCCCTGCA +
Preference number: 3 (lower is better)
Translates to: TLIFRHVERCQR*PCLLHMEFPPA
Trigger: TGCAGGGGGAAACTCCATGTGTAGCAAGCAGGGTCATCTCTGACAGCGTTCCACATGTCTGAAGATCAAAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR CCA 72 bp TGTTTCCCTTGGGTTCTCTCCACCTACTTAGTAGCTTaGGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: CFPWVLSTYLVA*GVCVCVCVCVC
Trigger: ACACACACACACACACACACACACACACACTCCCCAAGCTACTAAGTAGGTGGAGAGAACCCAAGGGAAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR CAA 90 bp CAAACAGAAAACAAAACCGAGTCTGAGTGTTATCATTTGTCTAGGGAGTGGAGTCGGCACTTCCATGAATaGCCTCCCTTTGACGCGTCC +
Preference number: 3 (lower is better)
Translates to: QTENKTESECYHLSREWSRHFHE*PPFDAS
Trigger: GGACGCGTCAAAGGGAGGCAATTCATGGAAGTGCCG...ACTCCACTCCCTAGACAAATGATAACACTCAGACTCGGTTTTGTTTTCTGTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR CAA 90 bp ATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGGCGTGCCTGGATCAGCTTaGGTCCACATTTCACAGTCC +
Preference number: 3 (lower is better)
Translates to: MLHSPATILFHWLDLPKGVPGSA*VHISQS
Trigger: GGACTGTGAAATGTGGACCAAAGCTGATCCAGGCAC...GCCTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR CCA 72 bp CTCTTTGGATTTACATTCAGAATTTACACATTCTCCTaGGGTCACAGAGTCACCTTCAGCCAGGGACCTGCA +
Preference number: 3 (lower is better)
Translates to: LFGFTFRIYTFS*GHRVTFSQGPA
Trigger: TGCAGGTCCCTGGCTGAAGGTGACTCTGTGACCCCAGGAGAATGTGTAAATTCTGAATGTAAATCCAAAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR TCA 72 bp TATCATTTGTCTAGGGAGTGGAGTCACAATCATTCCTaGATGTCACTCATCTGCTTCTCCGGTCAATGGCAA +
Preference number: 3 (lower is better)
Translates to: YHLSREWSHNHS*MSLICFSGQWQ
Trigger: TTGCCATTGACCGGAGAAGCAGATGAGTGACATTCAGGAATGATTGTGACTCCACTCCCTAGACAAATGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR CCA 72 bp CAATCTTTATCAACTCCTAACAGTTTCTGTTTCCCTTaGGTTCTCTCCACCTACTTAGTAGCTTGGGGAGTG +
Preference number: 3 (lower is better)
Translates to: QSLSTPNSFCFP*VLSTYLVAWGV
Trigger: CACTCCCCAAGCTACTAAGTAGGTGGAGAGAACCCAAGGGAAACAGAAACTGTTAGGAGTTGATAAAGATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR-3UTR CAA 90 bp GGAAAGCTCACTTTGAGTTGGTACAAAAACAAACAACAGCAAAAACAAACAGAAATGAATTGCCTCCCTTaGACGCGTCCTTTCCCTTTC +
Preference number: 3 (lower is better)
Translates to: GKLTLSWYKNKQQQKQTEMNCLP*TRPFPF
Trigger: GAAAGGGAAAGGACGCGTCAAAGGGAGGCAATTCAT...TTCTGTTTGTTTTTGCTGTTGTTTGTTTTTGTACCAACTCAAAGTGAGCTTTCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR GCA 72 bp ATGAAGAGTTTCAGTCATAACACAGATGAACTAAAATaGGTTTCCTCTTGGAAAGCTCACTTTGAGTTGGTA +
Preference number: 3 (lower is better)
Translates to: MKSFSHNTDELK*VSSWKAHFELV
Trigger: TACCAACTCAAAGTGAGCTTTCCAAGAGGAAACGCATTTTAGTTCATCTGTGTTATGACTGAAACTCTTCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp TGCCTCAGAAAATACTGTGCCTTCCTGTGCCCTGACCCCTGGCTGGCTCAGGAGCCACCTACGTCCACCTaGGTCCCCGCACCTGCCGGC +
Preference number: 4 (lower is better)
Translates to: CLRKYCAFLCPDPWLAQEPPTST*VPAPAG
Trigger: GCCGGCAGGTGCGGGGACCCAGGTGGACGTAGGTGG...CTCCTGAGCCAGCCAGGGGTCAGGGCACAGGAAGGCACAGTATTTTCTGAGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp TTCTCCTGGGGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCCGCTCGCGACGCTCCTaGAGCTGGCCTGGAGACACG +
Preference number: 4 (lower is better)
Translates to: FSWGHRVTFSQGPARISLRSRRS*SWPGDT
Trigger: CGTGTCTCCAGGCCAGCTGCAGGAGCGTCGCGAGCG...GAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACCCCAGGAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR TCA 90 bp GGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCTTCCTGAGATGGCCTGGAGACACGTaGGGGTCGCGCAGGAAGCTC +
Preference number: 4 (lower is better)
Translates to: GHRVTFSQGPARISLFLRWPGDT*GSRRKL
Trigger: GAGCTTCCTGCGCGACCCTCACGTGTCTCCAGGCCA...TCTCAGGAAGAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp GAGAGAGGAACCCTTCGCAGGCTTGAGTGCCTGGATCAGCTTTGGTCCACATTTGTCATCCCGGGCAGGTaGAGCGCGCTCCGGCTTCTC +
Preference number: 4 (lower is better)
Translates to: ERGTLRRLECLDQLWSTFVIPGR*SALRLL
Trigger: GAGAAGCCGGAGCGCGCTGCACCTGCCCGGGATGAC...AAATGTGGACCAAAGCTGATCCAGGCACTCAAGCCTGCGAAGGGTTCCTCTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp TTCTCCTGGGGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCAACAGCATCCACCCTTaGGCTGGGCAGGGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: FSWGHRVTFSQGPARISLNSIHP*AGQGSC
Trigger: GCAGGAGCCCTGCCCAGCCCAAGGGTGGATGCTGTT...GAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACCCCAGGAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp TGCCTCAGAAAATACTGTGCCTTCCTGTGCCCTGACCCCTGGCTGGCTCAGGAGCGCTGGTGCTGTTGCTaGAGCTGCTGGGTTGAATGG +
Preference number: 4 (lower is better)
Translates to: CLRKYCAFLCPDPWLAQERWCCC*SCWVEW
Trigger: CCATTCAACCCAGCAGCTGCAGCAACAGCACCAGCG...CTCCTGAGCCAGCCAGGGGTCAGGGCACAGGAAGGCACAGTATTTTCTGAGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp GTGAGTTCCGGCACTTCCATGAATTGCCTCCCTTTGACGCGTCCTTTCCCTTTCAGGTTTGCCCCGGGGTaGACCCAGGAGCTGCCACGT +
Preference number: 4 (lower is better)
Translates to: VSSGTSMNCLPLTRPFPFRFAPG*TQELPR
Trigger: ACGTGGCAGCTCCTGGGTGCACCCCGGGGCAAACCT...GAAAGGGAAAGGACGCGTCAAAGGGAGGCAATTCATGGAAGTGCCGGAACTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR TCA 90 bp GTGAGTTCCGGCACTTCCATGAATTGCCTCCCTTTGACGCGTCCTTTCCCTTTCACACTTCCCGGCTCTTaGCCTTCCTGGCTGGGGAAG +
Preference number: 4 (lower is better)
Translates to: VSSGTSMNCLPLTRPFPFTLPGS*PSWLGK
Trigger: CTTCCCCAGCCAGGAAGGTCAAGAGCCGGGAAGTGT...GAAAGGGAAAGGACGCGTCAAAGGGAGGCAATTCATGGAAGTGCCGGAACTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp CCGAGTCTGAGTGTTATCATTTGTCTAGGGAGTGGAGTCACAATCATTCCTGAACTCCGGGCTGGGGTCTaGCCCGGCCACCTTCTGCGC +
Preference number: 4 (lower is better)
Translates to: PSLSVIICLGSGVTIIPELRAGV*PGHLLR
Trigger: GCGCAGAAGGTGGCCGGGCCAGACCCCAGCCCGGAG...TTCAGGAATGATTGTGACTCCACTCCCTAGACAAATGATAACACTCAGACTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp CGCAGGCTTGAGTGCCTGGATCAGCTTTGGTCCACATTTCACAGTCCAAACATACCCCAGCCGTTCTGCTaGCACTCCCAGCAGCAGCGT +
Preference number: 4 (lower is better)
Translates to: RRLECLDQLWSTFHSPNIPQPFC*HSQQQR
Trigger: ACGCTGCTGCTGGGAGTGCCAGCAGAACGGCTGGGG...TATGTTTGGACTGTGAAATGTGGACCAAAGCTGATCCAGGCACTCAAGCCTGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp TTCTCCTGGGGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCTGTTGCTGCAGCTGCTaGGTTGAATGGTTCGGGGAG +
Preference number: 4 (lower is better)
Translates to: FSWGHRVTFSQGPARISLCCCSC*VEWFGE
Trigger: CTCCCCGAACCATTCAACCCAGCAGCTGCAGCAACA...GAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACCCCAGGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR TCA 90 bp GTGAGTTCCGGCACTTCCATGAATTGCCTCCCTTTGACGCGTCCTTTCCCTTTCCCCTGTACCTCCTCTTaGGCACCACGTACTTGGTGC +
Preference number: 4 (lower is better)
Translates to: VSSGTSMNCLPLTRPFPFPCTSS*APRTWC
Trigger: GCACCAAGTACGTGGTGCTCAAGAGGAGGTACAGGG...GAAAGGGAAAGGACGCGTCAAAGGGAGGCAATTCATGGAAGTGCCGGAACTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR TCA 90 bp GTGAGTTCCGGCACTTCCATGAATTGCCTCCCTTTGACGCGTCCTTTCCCTTTCCCTGCTTGGGATCCATaGAGAGTGTGGCTGACTGGC +
Preference number: 4 (lower is better)
Translates to: VSSGTSMNCLPLTRPFPFPAWDP*RVWLTG
Trigger: GCCAGTCAGCCACACTCTTCATGGATCCCAAGCAGG...GAAAGGGAAAGGACGCGTCAAAGGGAGGCAATTCATGGAAGTGCCGGAACTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp CAATCATTCCTGAATGTCACTCATCTGCTTCTCCGGTCAATGGCAATGACACCCGGGGTCCTGGCGCACTaGGGCCACCGAGTTCACGAA +
Preference number: 4 (lower is better)
Translates to: QSFLNVTHLLLRSMAMTPGVLAH*GHRVHE
Trigger: TTCGTGAACTCGGTGGCCGCAGTGCGCCAGGACCCC...GGGTGTCATTGCCATTGACCGGAGAAGCAGATGAGTGACATTCAGGAATGATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp TGCCTCAGAAAATACTGTGCCTTCCTGTGCCCTGACCCCTGGCTGGCTCAGGAGTGCTTTGCTATCCAGTaGAAGGCTGTGTACCCAGTC +
Preference number: 4 (lower is better)
Translates to: CLRKYCAFLCPDPWLAQECFAIQ*KAVYPV
Trigger: GACTGGGTACACAGCCTTGCACTGGATAGCAAAGCA...CTCCTGAGCCAGCCAGGGGTCAGGGCACAGGAAGGCACAGTATTTTCTGAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
3UTR CAA 72 bp TGGCTGGCTCAGGAGAGAGAGGAACCCTTCGCAGGCTaGAGTGCCTGGATCAGCTTTGGTCCACATTTCACA +
Preference number: 4 (lower is better)
Translates to: WLAQEREEPFAG*SAWISFGPHFT
Trigger: TGTGAAATGTGGACCAAAGCTGATCCAGGCACTCAAGCCTGCGAAGGGTTCCTCTCTCTCCTGAGCCAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp TTCTCCTGGGGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCAGGAAGCTCTTGAAGTaGCTCAGCAGCTCTGCGTTA +
Preference number: 4 (lower is better)
Translates to: FSWGHRVTFSQGPARISLRKLLK*LSSSAL
Trigger: TAACGCAGAGCTGCTGAGCCACTTCAAGAGCTTCCT...GAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACCCCAGGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGGTGCCGTCGGGGTCCTaGCGCACTGCGGCCACCGAG +
Preference number: 4 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKVPSGS*RTAATE
Trigger: CTCGGTGGCCGCAGTGCGCCAGGACCCCGACGGCAC...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp CGCAGGCTTGAGTGCCTGGATCAGCTTTGGTCCACATTTCACAGTCCAAACATAGGCTTGAGCAGCCTCTaGCTCCGGTGTCCTCTGGTT +
Preference number: 4 (lower is better)
Translates to: RRLECLDQLWSTFHSPNIGLSSL*LRCPLV
Trigger: AACCAGAGGACACCGGAGCCAGAGGCTGCTCAAGCC...TATGTTTGGACTGTGAAATGTGGACCAAAGCTGATCCAGGCACTCAAGCCTGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp GAGAGAGGAACCCTTCGCAGGCTTGAGTGCCTGGATCAGCTTTGGTCCACATTTTCCACTCATGCTCCCTaGTGTCTAGAGGGACAAGGG +
Preference number: 4 (lower is better)
Translates to: ERGTLRRLECLDQLWSTFSTHAP*CLEGQG
Trigger: CCCTTGTCCCTCTAGACACCAGGGAGCATGAGTGGA...AAATGTGGACCAAAGCTGATCCAGGCACTCAAGCCTGCGAAGGGTTCCTCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR TCA 90 bp CAATCATTCCTGAATGTCACTCATCTGCTTCTCCGGTCAATGGCAATGACACCCCGCGCAGGAAGCTCTTaGAGTGGCTCAGCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: QSFLNVTHLLLRSMAMTPRAGSS*SGSAAL
Trigger: CAGAGCTGCTGAGCCACTTCAAGAGCTTCCTGCGCG...GGGTGTCATTGCCATTGACCGGAGAAGCAGATGAGTGACATTCAGGAATGATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR TCA 90 bp CGCAGGCTTGAGTGCCTGGATCAGCTTTGGTCCACATTTCACAGTCCAAACATAACTCCCTGGTGCCCGTaGATAGCTGCAAGGTGCAGT +
Preference number: 4 (lower is better)
Translates to: RRLECLDQLWSTFHSPNITPWCP*IAARCS
Trigger: ACTGCACCTTGCAGCTATTCACGGGCACCAGGGAGT...TATGTTTGGACTGTGAAATGTGGACCAAAGCTGATCCAGGCACTCAAGCCTGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp TTATACTTAGCAGCTTCACAAAGTTCTGATGCTTTTAACACTTACTGCTTCCCCCTGGGTCCCCGCACCTaGCGGCGGCTTCTGCGGCTC +
Preference number: 4 (lower is better)
Translates to: LYLAASQSSDAFNTYCFPLGPRT*RRLLRL
Trigger: GAGCCGCAGAAGCCGCCGGCAGGTGCGGGGACCCAG...GGGGAAGCAGTAAGTGTTAAAAGCATCAGAACTTTGTGAAGCTGCTAAGTATAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp CGCAGGCTTGAGTGCCTGGATCAGCTTTGGTCCACATTTCACAGTCCAAACATAGTCAGGAAGTCTCTGTaGAAAGCCAGCTGGGGGTCC +
Preference number: 4 (lower is better)
Translates to: RRLECLDQLWSTFHSPNIVRKSL*KASWGS
Trigger: GGACCCCCAGCTGGCTTTGCACAGAGACTTCCTGAC...TATGTTTGGACTGTGAAATGTGGACCAAAGCTGATCCAGGCACTCAAGCCTGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp GTGAGTTCCGGCACTTCCATGAATTGCCTCCCTTTGACGCGTCCTTTCCCTTTCACTGCCATGGCTTCTTaGCACTGCAGTCCCGAATGT +
Preference number: 4 (lower is better)
Translates to: VSSGTSMNCLPLTRPFPFTAMAS*HCSPEC
Trigger: ACATTCGGGACTGCAGTGGCAAGAAGCCATGGCAGT...GAAAGGGAAAGGACGCGTCAAAGGGAGGCAATTCATGGAAGTGCCGGAACTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp TTATACTTAGCAGCTTCACAAAGTTCTGATGCTTTTAACACTTACTGCTTCCCCACAGGGCCCGGTCGCTaGAGGCCCTCCTCCCCCAGT +
Preference number: 4 (lower is better)
Translates to: LYLAASQSSDAFNTYCFPTGPGR*RPSSPS
Trigger: ACTGGGGGAGGAGGGCCTGCAGCGACCGGGCCCTGT...GGGGAAGCAGTAAGTGTTAAAAGCATCAGAACTTTGTGAAGCTGCTAAGTATAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGGGCTCCGGTGTCCTCTaGTTCGGGCTGTCCTCCGGG +
Preference number: 4 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKGSGVL*FGLSSG
Trigger: CCCGGAGGACAGCCCGAACCAGAGGACACCGGAGCC...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp ATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGGCGCAGCGGCTGTCCGGTaGACTGTCCCCAGCCGTTCT +
Preference number: 4 (lower is better)
Translates to: MLHSPATILFHWLDLPKGAAAVR*TVPSRS
Trigger: AGAACGGCTGGGGACAGTCCACCGGACAGCCGCTGC...GCCTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp GAGAGAGGAACCCTTCGCAGGCTTGAGTGCCTGGATCAGCTTTGGTCCACATTTGCAAGGGCTGTCGTTTaGTGGCAAAAACAGATCCTC +
Preference number: 4 (lower is better)
Translates to: ERGTLRRLECLDQLWSTFARAVV*WQKQIL
Trigger: GAGGATCTGTTTTTGCCACCAAACGACAGCCCTTGC...AAATGTGGACCAAAGCTGATCCAGGCACTCAAGCCTGCGAAGGGTTCCTCTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp CAATCATTCCTGAATGTCACTCATCTGCTTCTCCGGTCAATGGCAATGACACCCGCAATGCCCGCCTTCTaGGCTCCAGAGACCAAATCC +
Preference number: 4 (lower is better)
Translates to: QSFLNVTHLLLRSMAMTPAMPAF*APETKS
Trigger: GGATTTGGTCTCTGGAGCCCAGAAGGCGGGCATTGC...GGGTGTCATTGCCATTGACCGGAGAAGCAGATGAGTGACATTCAGGAATGATTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGGCACCACGTACTTGGTaGCGTCGGGGTCCTGGCGCA +
Preference number: 4 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKAPRTW*RRGPGA
Trigger: TGCGCCAGGACCCCGACGGCACCAAGTACGTGGTGC...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp ACAGAAAACAAAACCGAGTCTGAGTGTTATCATTTGTCTAGGGAGTGGAGTCACCCACAGCCGCACACCTaGCTCTGGCTTGAGCAGCCT +
Preference number: 4 (lower is better)
Translates to: TENKTESECYHLSREWSHPQPHT*LWLEQP
Trigger: AGGCTGCTCAAGCCAGAGGCAGGTGTGCGGCTGTGG...GTGACTCCACTCCCTAGACAAATGATAACACTCAGACTCGGTTTTGTTTTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp GGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCTTCCTGAGACTTCCATGGCTCTCTTaGTCCACAAAGTCATTCAGA +
Preference number: 4 (lower is better)
Translates to: GHRVTFSQGPARISLFLRLPWLS*STKSFR
Trigger: TCTGAATGACTTTGTGGAGCAAGAGAGCCATGGAAG...TCTCAGGAAGAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp ATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGGCACTCGGCCCCCGGCCTaGCACAGAAAGTCCAGCAGT +
Preference number: 4 (lower is better)
Translates to: MLHSPATILFHWLDLPKGTRPPA*HRKSSS
Trigger: ACTGCTGGACTTTCTGTGCCAGGCCGGGGGCCGAGT...GCCTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp CAATCATTCCTGAATGTCACTCATCTGCTTCTCCGGTCAATGGCAATGACACCCCTGTGCAAAGCCAGCTaGGGGTCCTCCCAGAACAAA +
Preference number: 4 (lower is better)
Translates to: QSFLNVTHLLLRSMAMTPLCKAS*GSSQNK
Trigger: TTTGTTCTGGGAGGACCCCCAGCTGGCTTTGCACAG...GGGTGTCATTGCCATTGACCGGAGAAGCAGATGAGTGACATTCAGGAATGATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR TCA 90 bp CAATCATTCCTGAATGTCACTCATCTGCTTCTCCGGTCAATGGCAATGACACCCTCCTGGAGGGACAGCTaGCAACGAATGCTTCGAAAG +
Preference number: 4 (lower is better)
Translates to: QSFLNVTHLLLRSMAMTPSWRDS*QRMLRK
Trigger: CTTTCGAAGCATTCGTTGTCAGCTGTCCCTCCAGGA...GGGTGTCATTGCCATTGACCGGAGAAGCAGATGAGTGACATTCAGGAATGATTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp GGAAAGCTCACTTTGAGTTGGTACAAAAACAAACAACAGCAAAAACAAACAGAAGGCCCGGCCACCTTCTaGGCGCTGCCACCTACGTCC +
Preference number: 4 (lower is better)
Translates to: GKLTLSWYKNKQQQKQTEGPATF*ALPPTS
Trigger: GGACGTAGGTGGCAGCGCGCAGAAGGTGGCCGGGCC...TTCTGTTTGTTTTTGCTGTTGTTTGTTTTTGTACCAACTCAAAGTGAGCTTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp TTATACTTAGCAGCTTCACAAAGTTCTGATGCTTTTAACACTTACTGCTTCCCCCTCCTGCAGCTGGCCTaGAGACACGTGAGGGTCGCG +
Preference number: 4 (lower is better)
Translates to: LYLAASQSSDAFNTYCFPLLQLA*RHVRVA
Trigger: CGCGACCCTCACGTGTCTCCAGGCCAGCTGCAGGAG...GGGGAAGCAGTAAGTGTTAAAAGCATCAGAACTTTGTGAAGCTGCTAAGTATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp ATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGGCGCAGGGAAGGGCTCTTaGGGGTGGTCTCCAAGGCTT +
Preference number: 4 (lower is better)
Translates to: MLHSPATILFHWLDLPKGAGKGS*GWSPRL
Trigger: AAGCCTTGGAGACCACCCCCAAGAGCCCTTCCCTGC...GCCTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR TCA 90 bp GAGAGAGGAACCCTTCGCAGGCTTGAGTGCCTGGATCAGCTTTGGTCCACATTTCTCTTCTCTCTCCTTTaGGGTGTGGATTTTCTCATA +
Preference number: 4 (lower is better)
Translates to: ERGTLRRLECLDQLWSTFLFSLL*GVDFLI
Trigger: TATGAGAAAATCCACACCTCAAAGGAGAGAGAAGAG...AAATGTGGACCAAAGCTGATCCAGGCACTCAAGCCTGCGAAGGGTTCCTCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp ATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGGCCAGAAAGTCCAGCAGTaGCTCCTGGCTCAGCTCTCC +
Preference number: 4 (lower is better)
Translates to: MLHSPATILFHWLDLPKGQKVQQ*LLAQLS
Trigger: GGAGAGCTGAGCCAGGAGGCACTGCTGGACTTTCTG...GCCTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGTCGGGCTCAGGCACCTaGAGGTATCTGGCTACCCAC +
Preference number: 4 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKSGSGT*RYLATH
Trigger: GTGGGTAGCCAGATACCTGCAGGTGCCTGAGCCCGA...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp CGCAGGCTTGAGTGCCTGGATCAGCTTTGGTCCACATTTCACAGTCCAAACATAAAGTCCTCATCAGGATaGTCCTCGTCTGAGGAAGAA +
Preference number: 4 (lower is better)
Translates to: RRLECLDQLWSTFHSPNIKSSSG*SSSEEE
Trigger: TTCTTCCTCAGACGAGGAGCATCCTGATGAGGACTT...TATGTTTGGACTGTGAAATGTGGACCAAAGCTGATCCAGGCACTCAAGCCTGCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGCTGGAGGAAGTTGTCTaGCAACACCGACCAGGCGCG +
Preference number: 4 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKLEEVV*QHRPGA
Trigger: CGCGCCTGGTCGGTGTTGCCAGACAACTTCCTCCAG...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR TCA 90 bp ACAGAAAACAAAACCGAGTCTGAGTGTTATCATTTGTCTAGGGAGTGGAGTCACCCAGAGACCAAATCCTaGAGGGCACACAGGTCACCA +
Preference number: 4 (lower is better)
Translates to: TENKTESECYHLSREWSHPETKS*RAHRSP
Trigger: TGGTGACCTGTGTGCCCTTCAGGATTTGGTCTCTGG...GTGACTCCACTCCCTAGACAAATGATAACACTCAGACTCGGTTTTGTTTTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp CCGAGTCTGAGTGTTATCATTTGTCTAGGGAGTGGAGTCACAATCATTCCTGAACTCACAATCCACTCATaGTCCCTGGTGTCTAGAGGG +
Preference number: 4 (lower is better)
Translates to: PSLSVIICLGSGVTIIPELTIHS*SLVSRG
Trigger: CCCTCTAGACACCAGGGAGCATGAGTGGATTGTGAG...TTCAGGAATGATTGTGACTCCACTCCCTAGACAAATGATAACACTCAGACTCGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR TCA 90 bp TTATACTTAGCAGCTTCACAAAGTTCTGATGCTTTTAACACTTACTGCTTCCCCCAGACCTTCGGAACTTaGGGGCAGGGAAGGGCTCTT +
Preference number: 4 (lower is better)
Translates to: LYLAASQSSDAFNTYCFPQTFGT*GQGRAL
Trigger: AAGAGCCCTTCCCTGCCCTCAAGTTCCGAAGGTCTG...GGGGAAGCAGTAAGTGTTAAAAGCATCAGAACTTTGTGAAGCTGCTAAGTATAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGTGCTGTTGCTGCAGCTaGTGGGTTGAATGGTTCGGG +
Preference number: 4 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKCCCCS*WVEWFG
Trigger: CCCGAACCATTCAACCCAGCAGCTGCAGCAACAGCA...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGCTTTGGGTCCACTGCTaGTCTCCTCACTTCCATGGC +
Preference number: 4 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKLWVHC*SPHFHG
Trigger: GCCATGGAAGTGAGGAGAGCAGCAGTGGACCCAAAG...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp CCGAGTCTGAGTGTTATCATTTGTCTAGGGAGTGGAGTCACAATCATTCCTGAACAGGTCACCATGCTTTaGTATCCAGTGCAAGGCTGT +
Preference number: 4 (lower is better)
Translates to: PSLSVIICLGSGVTIIPEQVTML*YPVQGC
Trigger: ACAGCCTTGCACTGGATAGCAAAGCATGGTGACCTG...TTCAGGAATGATTGTGACTCCACTCCCTAGACAAATGATAACACTCAGACTCGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp GGAAAGCTCACTTTGAGTTGGTACAAAAACAAACAACAGCAAAAACAAACAGAACCTTGGAAGGTTTCCTaGACCGAGGTGGGCGCCGAC +
Preference number: 4 (lower is better)
Translates to: GKLTLSWYKNKQQQKQTEPWKVS*TEVGAD
Trigger: GTCGGCGCCCACCTCGGTCCAGGAAACCTTCCAAGG...TTCTGTTTGTTTTTGCTGTTGTTTGTTTTTGTACCAACTCAAAGTGAGCTTTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp ATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGGCGCACACAGGTCACCATaGTTTGCTATCCAGTGCAAG +
Preference number: 4 (lower is better)
Translates to: MLHSPATILFHWLDLPKGAHRSP*FAIQCK
Trigger: CTTGCACTGGATAGCAAAGCATGGTGACCTGTGTGC...GCCTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGTTCCGGGAGATTCTTTaGGTCCACTGCTGCTCTCCT +
Preference number: 4 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKFREIL*VHCCSP
Trigger: AGGAGAGCAGCAGTGGACCCAAAGAATCTCCCGGAA...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp CAAACAGAAAACAAAACCGAGTCTGAGTGTTATCATTTGTCTAGGGAGTGGAGTGAAGCCAGGAACCACTaGCAAGCCTCACAATCCACT +
Preference number: 4 (lower is better)
Translates to: QTENKTESECYHLSREWSEARNH*QASQST
Trigger: AGTGGATTGTGAGGCTTGCCAGTGGTTCCTGGCTTC...ACTCCACTCCCTAGACAAATGATAACACTCAGACTCGGTTTTGTTTTCTGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp CAAACAGAAAACAAAACCGAGTCTGAGTGTTATCATTTGTCTAGGGAGTGGAGTAGCTGCAAGGTGCAGTaGGGTATAGCCACAACTGGA +
Preference number: 4 (lower is better)
Translates to: QTENKTESECYHLSREWSSCKVQ*GIATTG
Trigger: TCCAGTTGTGGCTATACCCCACTGCACCTTGCAGCT...ACTCCACTCCCTAGACAAATGATAACACTCAGACTCGGTTTTGTTTTCTGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR TCA 90 bp ATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGGCTGTTGTGCTGAGTTTTaGGCAAAGCAGCCAAGGAAG +
Preference number: 4 (lower is better)
Translates to: MLHSPATILFHWLDLPKGCCAEF*AKQPRK
Trigger: CTTCCTTGGCTGCTTTGCTCAAAACTCAGCACAACA...GCCTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp GGAAAGCTCACTTTGAGTTGGTACAAAAACAAACAACAGCAAAAACAAACAGAAGTGCGCTGGTGCTGTTaGTGCAGCTGCTGGGTTGAA +
Preference number: 4 (lower is better)
Translates to: GKLTLSWYKNKQQQKQTEVRWCC*CSCWVE
Trigger: TTCAACCCAGCAGCTGCAGCAACAGCACCAGCGCAC...TTCTGTTTGTTTTTGCTGTTGTTTGTTTTTGTACCAACTCAAAGTGAGCTTTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp ACAGAAAACAAAACCGAGTCTGAGTGTTATCATTTGTCTAGGGAGTGGAGTCACGTTTCTGAAGGTAGCTaGAGGAAGTTGTCTGGCAAC +
Preference number: 4 (lower is better)
Translates to: TENKTESECYHLSREWSHVSEGS*RKLSGN
Trigger: GTTGCCAGACAACTTCCTCCAGCTACCTTCAGAAAC...GTGACTCCACTCCCTAGACAAATGATAACACTCAGACTCGGTTTTGTTTTCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGCTCTCCTCACTTCCATaGCTCTCTTGCTCCACAAAG +
Preference number: 4 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKLSSLP*LSCSTK
Trigger: CTTTGTGGAGCAAGAGAGCCATGGAAGTGAGGAGAG...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGTGCTCAGAAGGTCTGTaGGGTATCAAGGCTGCAGAT +
Preference number: 4 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKCSEGL*GIKAAD
Trigger: ATCTGCAGCCTTGATACCCCACAGACCTTCTGAGCA...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGAGGGCTGTCGTTTGGTaGCAAAAACAGATCCTCAAC +
Preference number: 4 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKRAVVW*QKQILN
Trigger: GTTGAGGATCTGTTTTTGCCACCAAACGACAGCCCT...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp CCGAGTCTGAGTGTTATCATTTGTCTAGGGAGTGGAGTCACAATCATTCCTGAACTCTCCTTTGAGGTGTaGATTTTCTCATATTGGCTG +
Preference number: 4 (lower is better)
Translates to: PSLSVIICLGSGVTIIPELSFEV*IFSYWL
Trigger: CAGCCAATATGAGAAAATCCACACCTCAAAGGAGAG...TTCAGGAATGATTGTGACTCCACTCCCTAGACAAATGATAACACTCAGACTCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGAGGAAGAAGGAGATTTaGTTCTTCCTGTTCGAGAGC +
Preference number: 4 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKRKKEI*FFLFES
Trigger: GCTCTCGAACAGGAAGAACCAAATCTCCTTCTTCCT...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp TTATACTTAGCAGCTTCACAAAGTTCTGATGCTTTTAACACTTACTGCTTCCCCTTACTGTTCAGATACTaGCATGGCTTCTTGCCACTG +
Preference number: 4 (lower is better)
Translates to: LYLAASQSSDAFNTYCFPLLFRY*HGFLPL
Trigger: CAGTGGCAAGAAGCCATGGCAGTATCTGAACAGTAA...GGGGAAGCAGTAAGTGTTAAAAGCATCAGAACTTTGTGAAGCTGCTAAGTATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CCA 90 bp GGAAAGCTCACTTTGAGTTGGTACAAAAACAAACAACAGCAAAAACAAACAGAAGTTCAGATACTGCCATaGCTTCTTGCCACTGCAGTC +
Preference number: 4 (lower is better)
Translates to: GKLTLSWYKNKQQQKQTEVQILP*LLATAV
Trigger: GACTGCAGTGGCAAGAAGCCATGGCAGTATCTGAAC...TTCTGTTTGTTTTTGCTGTTGTTTGTTTTTGTACCAACTCAAAGTGAGCTTTCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR GCA 90 bp TTATACTTAGCAGCTTCACAAAGTTCTGATGCTTTTAACACTTACTGCTTCCCCCGAGAAGCCAGTCTTTaGACTAGCAATTTGATGACT +
Preference number: 4 (lower is better)
Translates to: LYLAASQSSDAFNTYCFPREASL*TSNLMT
Trigger: AGTCATCAAATTGCTAGTGCAAAGACTGGCTTCTCG...GGGGAAGCAGTAAGTGTTAAAAGCATCAGAACTTTGTGAAGCTGCTAAGTATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp CACCTTCTGCGCGCTGCCACCTACGTCCACCTGGGTCCCCGCACCTaGCGGCGGCTTCTGCGGCTCCGGGTCACGGCGGCGGTGGCCCCG +
Preference number: 5 (lower is better)
Translates to: HLLRAATYVHLGPRT*RRLLRLRVTAAVAP
Trigger: CGGGGCCACCGCCGCCGTGACCCGGAGCCGCAGAAGCCGCCGGCAGGTGCGGGGACCCAGGTGGACGTAGGTGGCAGCGCGCAGAAGGTG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp TGGTTCGGGCTGTCCTCCGGGCTGGGGTCTGGCCCGGCCACCTTCTaGGCGCTGCCACCTACGTCCACCTGGGTCCCCGCACCTGCCGGC +
Preference number: 5 (lower is better)
Translates to: WFGLSSGLGSGPATF*ALPPTSTWVPAPAG
Trigger: GCCGGCAGGTGCGGGGACCCAGGTGGACGTAGGTGGCAGCGCGCAGAAGGTGGCCGGGCCAGACCCCAGCCCGGAGGACAGCCCGAACCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp TCGACGGCGGTCGGAGGCCAGACAGGCGGTACAGATCCAGGCGCGTaGTCGGCGGCCTCTCCTTCCCTCAGCCACCCCGGAGCTCCGAGG +
Preference number: 5 (lower is better)
Translates to: STAVGGQTGGTDPGA*SAASPSLSHPGAPR
Trigger: CCTCGGAGCTCCGGGGTGGCTGAGGGAAGGAGAGGCCGCCGAGCACGCGCCTGGATCTGTACCGCCTGTCTGGCCTCCGACCGCCGTCGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp CGGCGGCGGTGGCCCCGCGGCTTTCCATCTACAGGGCCCGGTCGCTaGAGGCCCTCCTCCCCCAGTAGGTCCCTGTACCTCCTCTTGAGC +
Preference number: 5 (lower is better)
Translates to: RRRWPRGFPSTGPGR*RPSSPSRSLYLLLS
Trigger: GCTCAAGAGGAGGTACAGGGACCTACTGGGGGAGGAGGGCCTGCAGCGACCGGGCCCTGTAGATGGAAAGCCGCGGGGCCACCGCCGCCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 90 bp TCGCGTCCCCACAGCCGCACACCTGCCTCTGGCTTGAGCAGCCTCTaGCTCCGGTGTCCTCTGGTTCGGGCTGTCCTCCGGGCTGGGGTC +
Preference number: 5 (lower is better)
Translates to: SRPHSRTPASGLSSL*LRCPLVRAVLRAGV
Trigger: GACCCCAGCCCGGAGGACAGCCCGAACCAGAGGACACCGGAGCCAGAGGCTGCTCAAGCCAGAGGCAGGTGTGCGGCTGTGGGGACGCGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 90 bp CGTCGGGGTCCTGGCGCACTGCGGCCACCGAGTTCACGAAGCCCTTaGAGCGCTCGCGACGCTCCTGCAGCTGGCCTGGAGACACGTGAG +
Preference number: 5 (lower is better)
Translates to: RRGPGALRPPSSRSP*SARDAPAAGLETRE
Trigger: CTCACGTGTCTCCAGGCCAGCTGCAGGAGCGTCGCGAGCGCTTCAAGGGCTTCGTGAACTCGGTGGCCGCAGTGCGCCAGGACCCCGACG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 90 bp CAGCAGCGTCCTCGCGTCCCCACAGCCGCACACCTGCCTCTGGCTTaGGCAGCCTCTGGCTCCGGTGTCCTCTGGTTCGGGCTGTCCTCC +
Preference number: 5 (lower is better)
Translates to: QQRPRVPTAAHLPLA*AASGSGVLWFGLSS
Trigger: GGAGGACAGCCCGAACCAGAGGACACCGGAGCCAGAGGCTGCTCAAGCCAGAGGCAGGTGTGCGGCTGTGGGGACGCGAGGACGCTGCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp GGCACTCCCAGCAGCAGCGTCCTCGCGTCCCCACAGCCGCACACCTaGCTCTGGCTTGAGCAGCCTCTGGCTCCGGTGTCCTCTGGTTCG +
Preference number: 5 (lower is better)
Translates to: GTPSSSVLASPQPHT*LWLEQPLAPVSSGS
Trigger: CGAACCAGAGGACACCGGAGCCAGAGGCTGCTCAAGCCAGAGGCAGGTGTGCGGCTGTGGGGACGCGAGGACGCTGCTGCTGGGAGTGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 90 bp TCTTCTGGCAGCGGCTGTCCGGTGGACTGTCCCCAGCCGTTCTGCTaGCACTCCCAGCAGCAGCGTCCTCGCGTCCCCACAGCCGCACAC +
Preference number: 5 (lower is better)
Translates to: SSGSGCPVDCPQPFC*HSQQQRPRVPTAAH
Trigger: GTGTGCGGCTGTGGGGACGCGAGGACGCTGCTGCTGGGAGTGCCAGCAGAACGGCTGGGGACAGTCCACCGGACAGCCGCTGCCAGAAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 90 bp GTCGCTGCAGGCCCTCCTCCCCCAGTAGGTCCCTGTACCTCCTCTTaGGCACCACGTACTTGGTGCCGTCGGGGTCCTGGCGCACTGCGG +
Preference number: 5 (lower is better)
Translates to: VAAGPPPPVGPCTSS*APRTWCRRGPGALR
Trigger: CCGCAGTGCGCCAGGACCCCGACGGCACCAAGTACGTGGTGCTCAAGAGGAGGTACAGGGACCTACTGGGGGAGGAGGGCCTGCAGCGAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp AGATCTTCTGGCAGCGGCTGTCCGGTGGACTGTCCCCAGCCGTTCTaGTGGCACTCCCAGCAGCAGCGTCCTCGCGTCCCCACAGCCGCA +
Preference number: 5 (lower is better)
Translates to: RSSGSGCPVDCPQPF*WHSQQQRPRVPTAA
Trigger: TGCGGCTGTGGGGACGCGAGGACGCTGCTGCTGGGAGTGCCAGCAGAACGGCTGGGGACAGTCCACCGGACAGCCGCTGCCAGAAGATCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 90 bp CCTGCAGCTGGCCTGGAGACACGTGAGGGTCGCGCAGGAAGCTCTTaGAGTGGCTCAGCAGCTCTGCGTTACGCACTCGGCCCCCGGCCT +
Preference number: 5 (lower is better)
Translates to: PAAGLETREGRAGSS*SGSAALRYALGPRP
Trigger: AGGCCGGGGGCCGAGTGCGTAACGCAGAGCTGCTGAGCCACTTCAAGAGCTTCCTGCGCGACCCTCACGTGTCTCCAGGCCAGCTGCAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 90 bp CCCTTGAAGCGCTCGCGACGCTCCTGCAGCTGGCCTGGAGACACGTaGGGGTCGCGCAGGAAGCTCTTGAAGTGGCTCAGCAGCTCTGCG +
Preference number: 5 (lower is better)
Translates to: PLKRSRRSCSWPGDT*GSRRKLLKWLSSSA
Trigger: CGCAGAGCTGCTGAGCCACTTCAAGAGCTTCCTGCGCGACCCTCACGTGTCTCCAGGCCAGCTGCAGGAGCGTCGCGAGCGCTTCAAGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp CACGTGAGGGTCGCGCAGGAAGCTCTTGAAGTGGCTCAGCAGCTCTaGGTTACGCACTCGGCCCCCGGCCTGGCACAGAAAGTCCAGCAG +
Preference number: 5 (lower is better)
Translates to: HVRVAQEALEVAQQL*VTHSAPGLAQKVQQ
Trigger: CTGCTGGACTTTCTGTGCCAGGCCGGGGGCCGAGTGCGTAACGCAGAGCTGCTGAGCCACTTCAAGAGCTTCCTGCGCGACCCTCACGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 90 bp GCCGAGCTGGTCTCCGAGACCCCAAAGGCGGTTTCTGAAGGTAGCTaGAGGAAGTTGTCTGGCAACACCGACCAGGCGCGAGTGGGCGCC +
Preference number: 5 (lower is better)
Translates to: AELVSETPKAVSEGS*RKLSGNTDQARVGA
Trigger: GGCGCCCACTCGCGCCTGGTCGGTGTTGCCAGACAACTTCCTCCAGCTACCTTCAGAAACCGCCTTTGGGGTCTCGGAGACCAGCTCGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 90 bp GTTCACGAAGCCCTTGAAGCGCTCGCGACGCTCCTGCAGCTGGCCTaGAGACACGTGAGGGTCGCGCAGGAAGCTCTTGAAGTGGCTCAG +
Preference number: 5 (lower is better)
Translates to: VHEALEALATLLQLA*RHVRVAQEALEVAQ
Trigger: CTGAGCCACTTCAAGAGCTTCCTGCGCGACCCTCACGTGTCTCCAGGCCAGCTGCAGGAGCGTCGCGAGCGCTTCAAGGGCTTCGTGAAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 90 bp TGGAGGAAGTTGTCTGGCAACACCGACCAGGCGCGAGTGGGCGCCTaGATCTCGGGCTCAGGCACCTGCAGGTATCTGGCTACCCACTCT +
Preference number: 5 (lower is better)
Translates to: WRKLSGNTDQARVGA*ISGSGTCRYLATHS
Trigger: AGAGTGGGTAGCCAGATACCTGCAGGTGCCTGAGCCCGAGATCCAGGCGCCCACTCGCGCCTGGTCGGTGTTGCCAGACAACTTCCTCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 90 bp AAGGTAGCTGGAGGAAGTTGTCTGGCAACACCGACCAGGCGCGAGTaGGCGCCTGGATCTCGGGCTCAGGCACCTGCAGGTATCTGGCTA +
Preference number: 5 (lower is better)
Translates to: KVAGGSCLATPTRRE*APGSRAQAPAGIWL
Trigger: TAGCCAGATACCTGCAGGTGCCTGAGCCCGAGATCCAGGCGCCCACTCGCGCCTGGTCGGTGTTGCCAGACAACTTCCTCCAGCTACCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 90 bp TGGGCTGGGCAGGGCTCCTGCCTTGGAAGGTTTCCTGGACCGAGGTaGGCGCCGACTCCTTTTCCACAAGTCCTCATCAGGATGCTCCTC +
Preference number: 5 (lower is better)
Translates to: WAGQGSCLGRFPGPR*APTPFPQVLIRMLL
Trigger: GAGGAGCATCCTGATGAGGACTTGTGGAAAAGGAGTCGGCGCCCACCTCGGTCCAGGAAACCTTCCAAGGCAGGAGCCCTGCCCAGCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp TCTCGGGCTCAGGCACCTGCAGGTATCTGGCTACCCACTCTTGAGTaGGCTGGTGCTGTTGCTGCAGCTGCTGGGTTGAATGGTTCGGGG +
Preference number: 5 (lower is better)
Translates to: SRAQAPAGIWLPTLE*AGAVAAAAGLNGSG
Trigger: CCCCGAACCATTCAACCCAGCAGCTGCAGCAACAGCACCAGCGCACTCAAGAGTGGGTAGCCAGATACCTGCAGGTGCCTGAGCCCGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 90 bp GTACCAAAACAGCATCCACCCTTGGGCTGGGCAGGGCTCCTGCCTTaGAAGGTTTCCTGGACCGAGGTGGGCGCCGACTCCTTTTCCACA +
Preference number: 5 (lower is better)
Translates to: VPKQHPPLGWAGLLP*KVSWTEVGADSFST
Trigger: TGTGGAAAAGGAGTCGGCGCCCACCTCGGTCCAGGAAACCTTCCAAGGCAGGAGCCCTGCCCAGCCCAAGGGTGGATGCTGTTTTGGTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 90 bp TACCCACTCTTGAGTGCGCTGGTGCTGTTGCTGCAGCTGCTGGGTTaGATGGTTCGGGGAGCCGGCGGTAAACAGCTCCAGTGGCTCTCT +
Preference number: 5 (lower is better)
Translates to: YPLLSALVLLLQLLG*MVRGAGGKQLQWLS
Trigger: AGAGAGCCACTGGAGCTGTTTACCGCCGGCTCCCCGAACCATTCAACCCAGCAGCTGCAGCAACAGCACCAGCGCACTCAAGAGTGGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 90 bp GGCCAGGATTCTGAGGACTCATCGAGAACCACGGGAAGGAGAGAATaGAAAGACAGAGCGGGCTCTGGCAGCGCCGAGCTGGTCTCCGAG +
Preference number: 5 (lower is better)
Translates to: GQDSEDSSRTTGRRE*KDRAGSGSAELVSE
Trigger: CTCGGAGACCAGCTCGGCGCTGCCAGAGCCCGCTCTGTCTTTTCATTCTCTCCTTCCCGTGGTTCTCGATGAGTCCTCAGAATCCTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp TTTCTGTACCAAAACAGCATCCACCCTTGGGCTGGGCAGGGCTCCTaGCTTGGAAGGTTTCCTGGACCGAGGTGGGCGCCGACTCCTTTT +
Preference number: 5 (lower is better)
Translates to: FLYQNSIHPWAGQGS*LGRFPGPRWAPTPF
Trigger: AAAAGGAGTCGGCGCCCACCTCGGTCCAGGAAACCTTCCAAGGCAGGAGCCCTGCCCAGCCCAAGGGTGGATGCTGTTTTGGTACAGAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 90 bp CTCCTCCTGACAGACCTTCGGAACTTGAGGGCAGGGAAGGGCTCTTaGGGGTGGTCTCCAAGGCTTTTAGCCACTGTTGGGACCTTCCGA +
Preference number: 5 (lower is better)
Translates to: LLLTDLRNLRAGKGS*GWSPRLLATVGTFR
Trigger: TCGGAAGGTCCCAACAGTGGCTAAAAGCCTTGGAGACCACCCCCAAGAGCCCTTCCCTGCCCTCAAGTTCCGAAGGTCTGTCAGGAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 90 bp CTGTGCAAAGCCAGCTGGGGGTCCTCCCAGAACAAAGTCAGCACGTaGAGCCAGGAACCACTGGCAAGCCTCACAATCCACTCATGCTCC +
Preference number: 5 (lower is better)
Translates to: LCKASWGSSQNKVST*SQEPLASLTIHSCS
Trigger: GGAGCATGAGTGGATTGTGAGGCTTGCCAGTGGTTCCTGGCTTCACGTGCTGACTTTGTTCTGGGAGGACCCCCAGCTGGCTTTGCACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 90 bp TCAAGACAGGTTGCAGCCCCTCTTCGGGGGTTCCGGGAGATTCTTTaGGTCCACTGCTGCTCTCCTCACTTCCATGGCTCTCTTGCTCCA +
Preference number: 5 (lower is better)
Translates to: SRQVAAPLRGFREIL*VHCCSPHFHGSLAP
Trigger: TGGAGCAAGAGAGCCATGGAAGTGAGGAGAGCAGCAGTGGACCCAAAGAATCTCCCGGAACCCCCGAAGAGGGGCTGCAACCTGTCTTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 90 bp GGGGGTCCTCCCAGAACAAAGTCAGCACGTGAAGCCAGGAACCACTaGCAAGCCTCACAATCCACTCATGCTCCCTGGTGTCTAGAGGGA +
Preference number: 5 (lower is better)
Translates to: GGPPRTKSAREARNH*QASQSTHAPWCLEG
Trigger: TCCCTCTAGACACCAGGGAGCATGAGTGGATTGTGAGGCTTGCCAGTGGTTCCTGGCTTCACGTGCTGACTTTGTTCTGGGAGGACCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp GCAGCCCCTCTTCGGGGGTTCCGGGAGATTCTTTGGGTCCACTGCTaGTCTCCTCACTTCCATGGCTCTCTTGCTCCACAAAGTCATTCA +
Preference number: 5 (lower is better)
Translates to: AAPLRGFREILWVHC*SPHFHGSLAPQSHS
Trigger: TGAATGACTTTGTGGAGCAAGAGAGCCATGGAAGTGAGGAGAGCAGCAGTGGACCCAAAGAATCTCCCGGAACCCCCGAAGAGGGGCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp GTTGCAGCCCCTCTTCGGGGGTTCCGGGAGATTCTTTGGGTCCACTaGTGCTCTCCTCACTTCCATGGCTCTCTTGCTCCACAAAGTCAT +
Preference number: 5 (lower is better)
Translates to: VAAPLRGFREILWVH*CSPHFHGSLAPQSH
Trigger: ATGACTTTGTGGAGCAAGAGAGCCATGGAAGTGAGGAGAGCAGCAGTGGACCCAAAGAATCTCCCGGAACCCCCGAAGAGGGGCTGCAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CAA 90 bp TGCCTCAGAAAATACTGTGCCTTCCTGTGCCCTGACCCCTGGCTGGCTCAGGAGACAGGTCACCATGCTTaGCTATCCAGTGCAAGGCTG +
Preference number: 5 (lower is better)
Translates to: CLRKYCAFLCPDPWLAQETGHHA*LSSARL
Trigger: CAGCCTTGCACTGGATAGCAAAGCATGGTGACCTGT...CTCCTGAGCCAGCCAGGGGTCAGGGCACAGGAAGGCACAGTATTTTCTGAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp CCCAGGAGCTGCCACGTTTCCCCAGAGACGTTACTGTTCAGATACTaGCATGGCTTCTTGCCACTGCAGTCCCGAATGTTCACCCGAGAA +
Preference number: 5 (lower is better)
Translates to: PRSCHVSPETLLFRY*HGFLPLQSRMFTRE
Trigger: TTCTCGGGTGAACATTCGGGACTGCAGTGGCAAGAAGCCATGGCAGTATCTGAACAGTAACGTCTCTGGGGAAACGTGGCAGCTCCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 90 bp GAGCTGCCACGTTTCCCCAGAGACGTTACTGTTCAGATACTGCCATaGCTTCTTGCCACTGCAGTCCCGAATGTTCACCCGAGAAGCCAG +
Preference number: 5 (lower is better)
Translates to: ELPRFPRDVTVQILP*LLATAVPNVHPRSQ
Trigger: CTGGCTTCTCGGGTGAACATTCGGGACTGCAGTGGCAAGAAGCCATGGCAGTATCTGAACAGTAACGTCTCTGGGGAAACGTGGCAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CAA 90 bp GGTCACAGAGTCACCTTCAGCCAGGGACCTGCAAGGATTAGCCTCTTCCTGAGATCCCTGTACCTCCTCTaGAGCACCACGTACTTGGTG +
Preference number: 5 (lower is better)
Translates to: GHRVTFSQGPARISLFLRSLYLL*STTYLV
Trigger: CACCAAGTACGTGGTGCTCAAGAGGAGGTACAGGGA...TCTCAGGAAGAGGCTAATCCTTGCAGGTCCCTGGCTGAAGGTGACTCTGTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 90 bp ACATCTAGTGCAATGCCCGCCTTCTGGGCTCCAGAGACCAAATCCTaGAGGGCACACAGGTCACCATGCTTTGCTATCCAGTGCAAGGCT +
Preference number: 5 (lower is better)
Translates to: TSSAMPAFWAPETKS*RAHRSPCFAIQCKA
Trigger: AGCCTTGCACTGGATAGCAAAGCATGGTGACCTGTGTGCCCTTCAGGATTTGGTCTCTGGAGCCCAGAAGGCGGGCATTGCACTAGATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp GACCGAGGTGGGCGCCGACTCCTTTTCCACAAGTCCTCATCAGGATaGTCCTCGTCTGAGGAAGAAGGAGATTTGGTTCTTCCTGTTCGA +
Preference number: 5 (lower is better)
Translates to: DRGGRRLLFHKSSSG*SSSEEEGDLVLPVR
Trigger: TCGAACAGGAAGAACCAAATCTCCTTCTTCCTCAGACGAGGAGCATCCTGATGAGGACTTGTGGAAAAGGAGTCGGCGCCCACCTCGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp GGCTCCAGAGACCAAATCCTGAAGGGCACACAGGTCACCATGCTTTaGTATCCAGTGCAAGGCTGTGTACCCAGTCAGGAAGTCTCTGTG +
Preference number: 5 (lower is better)
Translates to: GSRDQILKGTQVTML*YPVQGCVPSQEVSV
Trigger: CACAGAGACTTCCTGACTGGGTACACAGCCTTGCACTGGATAGCAAAGCATGGTGACCTGTGTGCCCTTCAGGATTTGGTCTCTGGAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CAA 90 bp CAATCATTCCTGAATGTCACTCATCTGCTTCTCCGGTCAATGGCAATGACACCCTTGAGCACCACGTACTaGGTGCCGTCGGGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: QSFLNVTHLLLRSMAMTPLSTTY*VPSGSW
Trigger: CCAGGACCCCGACGGCACCAAGTACGTGGTGCTCAA...GGGTGTCATTGCCATTGACCGGAGAAGCAGATGAGTGACATTCAGGAATGATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CAA 90 bp GAGAGAGGAACCCTTCGCAGGCTTGAGTGCCTGGATCAGCTTTGGTCCACATTTTACTGCCATGGCTTCTaGCCACTGCAGTCCCGAATG +
Preference number: 5 (lower is better)
Translates to: ERGTLRRLECLDQLWSTFYCHGF*PLQSRM
Trigger: CATTCGGGACTGCAGTGGCAAGAAGCCATGGCAGTA...AAATGTGGACCAAAGCTGATCCAGGCACTCAAGCCTGCGAAGGGTTCCTCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 90 bp TGGCTCTCTTGCTCCACAAAGTCATTCAGATCCTGGAGGGACAGCTaGCAACGAATGCTTCGAAAGACGGTAGATGGAGCGTTCCCTGGC +
Preference number: 5 (lower is better)
Translates to: WLSCSTKSFRSWRDS*QRMLRKTVDGAFPG
Trigger: GCCAGGGAACGCTCCATCTACCGTCTTTCGAAGCATTCGTTGTCAGCTGTCCCTCCAGGATCTGAATGACTTTGTGGAGCAAGAGAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 90 bp GCGCCGACTCCTTTTCCACAAGTCCTCATCAGGATGCTCCTCGTCTaGGGAAGAAGGAGATTTGGTTCTTCCTGTTCGAGAGCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: APTPFPQVLIRMLLV*GRRRFGSSCSRAPP
Trigger: AGGAGGAGCTCTCGAACAGGAAGAACCAAATCTCCTTCTTCCTCAGACGAGGAGCATCCTGATGAGGACTTGTGGAAAAGGAGTCGGCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp GTGGGGTATAGCCACAACTGGACCTCACATTTACATCTAGTGCAATaGCCGCCTTCTGGGCTCCAGAGACCAAATCCTGAAGGGCACACA +
Preference number: 5 (lower is better)
Translates to: VGYSHNWTSHLHLVQ*PPSGLQRPNPEGHT
Trigger: TGTGTGCCCTTCAGGATTTGGTCTCTGGAGCCCAGAAGGCGGGCATTGCACTAGATGTAAATGTGAGGTCCAGTTGTGGCTATACCCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp CCCCAGAGACGTTACTGTTCAGATACTGCCATGGCTTCTTGCCACTaGAGTCCCGAATGTTCACCCGAGAAGCCAGTCTTTGCACTAGCA +
Preference number: 5 (lower is better)
Translates to: PQRRYCSDTAMASCH*SPECSPEKPVFALA
Trigger: TGCTAGTGCAAAGACTGGCTTCTCGGGTGAACATTCGGGACTGCAGTGGCAAGAAGCCATGGCAGTATCTGAACAGTAACGTCTCTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 90 bp TCTGTGGGGTATCAAGGCTGCAGATCCATCCCTGCTTGGGATCCATaGAGAGTGTGGCTGACTGGCCACAGCATTAGCATCTGCCAATTT +
Preference number: 5 (lower is better)
Translates to: SVGYQGCRSIPAWDP*RVWLTGHSISICQF
Trigger: AAATTGGCAGATGCTAATGCTGTGGCCAGTCAGCCACACTCTTCATGGATCCCAAGCAGGGATGGATCTGCAGCCTTGATACCCCACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 90 bp ACGTTTCCCCAGAGACGTTACTGTTCAGATACTGCCATGGCTTCTTaGCACTGCAGTCCCGAATGTTCACCCGAGAAGCCAGTCTTTGCA +
Preference number: 5 (lower is better)
Translates to: TFPQRRYCSDTAMAS*HCSPECSPEKPVFA
Trigger: TGCAAAGACTGGCTTCTCGGGTGAACATTCGGGACTGCAGTGGCAAGAAGCCATGGCAGTATCTGAACAGTAACGTCTCTGGGGAAACGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CAA 90 bp CAATCATTCCTGAATGTCACTCATCTGCTTCTCCGGTCAATGGCAATGACACCCTCGCGCAGGAAGCTCTaGAAGTGGCTCAGCAGCTCT +
Preference number: 5 (lower is better)
Translates to: QSFLNVTHLLLRSMAMTPSRRKL*KWLSSS
Trigger: AGAGCTGCTGAGCCACTTCAAGAGCTTCCTGCGCGA...GGGTGTCATTGCCATTGACCGGAGAAGCAGATGAGTGACATTCAGGAATGATTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CAA 90 bp CCGAGTCTGAGTGTTATCATTTGTCTAGGGAGTGGAGTCACAATCATTCCTGAAGGCAGGGCTCCTGCCTaGGAAGGTTTCCTGGACCGA +
Preference number: 5 (lower is better)
Translates to: PSLSVIICLGSGVTIIPEGRAPA*EGFLDR
Trigger: TCGGTCCAGGAAACCTTCCAAGGCAGGAGCCCTGCC...TTCAGGAATGATTGTGACTCCACTCCCTAGACAAATGATAACACTCAGACTCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CAA 90 bp TGCCTCAGAAAATACTGTGCCTTCCTGTGCCCTGACCCCTGGCTGGCTCAGGAGACTCTTCTCTCTCCTTaGAGGTGTGGATTTTCTCAT +
Preference number: 5 (lower is better)
Translates to: CLRKYCAFLCPDPWLAQETLLSP*RCGFSH
Trigger: ATGAGAAAATCCACACCTCAAAGGAGAGAGAAGAGT...CTCCTGAGCCAGCCAGGGGTCAGGGCACAGGAAGGCACAGTATTTTCTGAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CAA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGACACCTGCCTCTGGCTaGAGCAGCCTCTGGCTCCGG +
Preference number: 5 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKTPASG*SSLWLR
Trigger: CCGGAGCCAGAGGCTGCTCAAGCCAGAGGCAGGTGT...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CAA 90 bp GTGAGTTCCGGCACTTCCATGAATTGCCTCCCTTTGACGCGTCCTTTCCCTTTCACTTCCATGGCTCTCTaGCTCCACAAAGTCATTCAG +
Preference number: 5 (lower is better)
Translates to: VSSGTSMNCLPLTRPFPFTSMAL*LHKVIQ
Trigger: CTGAATGACTTTGTGGAGCAAGAGAGCCATGGAAGT...GAAAGGGAAAGGACGCGTCAAAGGGAGGCAATTCATGGAAGTGCCGGAACTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CAA 90 bp ACAGAAAACAAAACCGAGTCTGAGTGTTATCATTTGTCTAGGGAGTGGAGTCACACAGACCTTCGGAACTaGAGGGCAGGGAAGGGCTCT +
Preference number: 5 (lower is better)
Translates to: TENKTESECYHLSREWSHTDLRN*RAGKGS
Trigger: AGAGCCCTTCCCTGCCCTCAAGTTCCGAAGGTCTGT...GTGACTCCACTCCCTAGACAAATGATAACACTCAGACTCGGTTTTGTTTTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CAA 90 bp TTATACTTAGCAGCTTCACAAAGTTCTGATGCTTTTAACACTTACTGCTTCCCCGTTCCGGGAGATTCTTaGGGTCCACTGCTGCTCTCC +
Preference number: 5 (lower is better)
Translates to: LYLAASQSSDAFNTYCFPVPGDS*GPLLLS
Trigger: GGAGAGCAGCAGTGGACCCAAAGAATCTCCCGGAAC...GGGGAAGCAGTAAGTGTTAAAAGCATCAGAACTTTGTGAAGCTGCTAAGTATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CAA 90 bp AGATGTTACACTCTCCAGCAACAATTTTATTTCACTGGCTGGACTTGCCAAAAGCTTTGCACTAGCAATTaGATGACTCCCTGGTGCCCG +
Preference number: 5 (lower is better)
Translates to: RCYTLQQQFYFTGWTCQKLCTSN*MTPWCP
Trigger: CGGGCACCAGGGAGTCATCAAATTGCTAGTGCAAAG...CTTTTGGCAAGTCCAGCCAGTGAAATAAAATTGTTGCTGGAGAGTGTAACATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS-3UTR CAA 90 bp TTATACTTAGCAGCTTCACAAAGTTCTGATGCTTTTAACACTTACTGCTTCCCCCAGATCCATCCCTGCTaGGGATCCATGAAGAGTGTG +
Preference number: 5 (lower is better)
Translates to: LYLAASQSSDAFNTYCFPQIHPC*GSMKSV
Trigger: CACACTCTTCATGGATCCCAAGCAGGGATGGATCTG...GGGGAAGCAGTAAGTGTTAAAAGCATCAGAACTTTGTGAAGCTGCTAAGTATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 72 bp CGCGCTGCCACCTACGTCCACCTGGGTCCCCGCACCTaGCGGCGGCTTCTGCGGCTCCGGGTCACGGCGGCG +
Preference number: 6 (lower is better)
Translates to: RAATYVHLGPRT*RRLLRLRVTAA
Trigger: CGCCGCCGTGACCCGGAGCCGCAGAAGCCGCCGGCAGGTGCGGGGACCCAGGTGGACGTAGGTGGCAGCGCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 72 bp CCGGGCTGGGGTCTGGCCCGGCCACCTTCTGCGCGCTaGCACCTACGTCCACCTGGGTCCCCGCACCTGCCG +
Preference number: 6 (lower is better)
Translates to: PGWGLARPPSAR*HLRPPGSPHLP
Trigger: CGGCAGGTGCGGGGACCCAGGTGGACGTAGGTGGCAGCGCGCAGAAGGTGGCCGGGCCAGACCCCAGCCCGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp CCGGCCACCTTCTGCGCGCTGCCACCTACGTCCACCTaGGTCCCCGCACCTGCCGGCGGCTTCTGCGGCTCC +
Preference number: 6 (lower is better)
Translates to: PATFCALPPTST*VPAPAGGFCGS
Trigger: GGAGCCGCAGAAGCCGCCGGCAGGTGCGGGGACCCAGGTGGACGTAGGTGGCAGCGCGCAGAAGGTGGCCGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 72 bp CTGTCCTCCGGGCTGGGGTCTGGCCCGGCCACCTTCTaGGCGCTGCCACCTACGTCCACCTGGGTCCCCGCA +
Preference number: 6 (lower is better)
Translates to: LSSGLGSGPATF*ALPPTSTWVPA
Trigger: TGCGGGGACCCAGGTGGACGTAGGTGGCAGCGCGCAGAAGGTGGCCGGGCCAGACCCCAGCCCGGAGGACAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 72 bp CAGCCACCCCGGAGCTCCGAGGTCATCCCGGGCAGGTaGAGCGCGCTCCGGCTTCTCGCAGGCGACTGCAGG +
Preference number: 6 (lower is better)
Translates to: QPPRSSEVIPGR*SALRLLAGDCR
Trigger: CCTGCAGTCGCCTGCGAGAAGCCGGAGCGCGCTGCACCTGCCCGGGATGACCTCGGAGCTCCGGGGTGGCTG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 72 bp GTCGGAGGCCAGACAGGCGGTACAGATCCAGGCGCGTaGTCGGCGGCCTCTCCTTCCCTCAGCCACCCCGGA +
Preference number: 6 (lower is better)
Translates to: VGGQTGGTDPGA*SAASPSLSHPG
Trigger: TCCGGGGTGGCTGAGGGAAGGAGAGGCCGCCGAGCACGCGCCTGGATCTGTACCGCCTGTCTGGCCTCCGAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp TGTCCTCTGGTTCGGGCTGTCCTCCGGGCTGGGGTCTaGCCCGGCCACCTTCTGCGCGCTGCCACCTACGTC +
Preference number: 6 (lower is better)
Translates to: CPLVRAVLRAGV*PGHLLRAATYV
Trigger: GACGTAGGTGGCAGCGCGCAGAAGGTGGCCGGGCCAGACCCCAGCCCGGAGGACAGCCCGAACCAGAGGACA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 72 bp CCTCGCGTCCCCACAGCCGCACACCTGCCTCTGGCTTaGGCAGCCTCTGGCTCCGGTGTCCTCTGGTTCGGG +
Preference number: 6 (lower is better)
Translates to: PRVPTAAHLPLA*AASGSGVLWFG
Trigger: CCCGAACCAGAGGACACCGGAGCCAGAGGCTGCTCAAGCCAGAGGCAGGTGTGCGGCTGTGGGGACGCGAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp AGCGGCTGTCCGGTGGACTGTCCCCAGCCGTTCTGCTaGCACTCCCAGCAGCAGCGTCCTCGCGTCCCCACA +
Preference number: 6 (lower is better)
Translates to: SGCPVDCPQPFC*HSQQQRPRVPT
Trigger: TGTGGGGACGCGAGGACGCTGCTGCTGGGAGTGCCAGCAGAACGGCTGGGGACAGTCCACCGGACAGCCGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp CACAGCCGCACACCTGCCTCTGGCTTGAGCAGCCTCTaGCTCCGGTGTCCTCTGGTTCGGGCTGTCCTCCGG +
Preference number: 6 (lower is better)
Translates to: HSRTPASGLSSL*LRCPLVRAVLR
Trigger: CCGGAGGACAGCCCGAACCAGAGGACACCGGAGCCAGAGGCTGCTCAAGCCAGAGGCAGGTGTGCGGCTGTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp AGCGTCCTCGCGTCCCCACAGCCGCACACCTGCCTCTaGCTTGAGCAGCCTCTGGCTCCGGTGTCCTCTGGT +
Preference number: 6 (lower is better)
Translates to: SVLASPQPHTCL*LEQPLAPVSSG
Trigger: ACCAGAGGACACCGGAGCCAGAGGCTGCTCAAGCCAGAGGCAGGTGTGCGGCTGTGGGGACGCGAGGACGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp CAGCATCCACCCTTGGGCTGGGCAGGGCTCCTGCCTTaGAAGGTTTCCTGGACCGAGGTGGGCGCCGACTCC +
Preference number: 6 (lower is better)
Translates to: QHPPLGWAGLLP*KVSWTEVGADS
Trigger: GGAGTCGGCGCCCACCTCGGTCCAGGAAACCTTCCAAGGCAGGAGCCCTGCCCAGCCCAAGGGTGGATGCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 72 bp TCCTGGCGCACTGCGGCCACCGAGTTCACGAAGCCCTaGAAGCGCTCGCGACGCTCCTGCAGCTGGCCTGGA +
Preference number: 6 (lower is better)
Translates to: SWRTAATEFTKP*KRSRRSCSWPG
Trigger: TCCAGGCCAGCTGCAGGAGCGTCGCGAGCGCTTCAAGGGCTTCGTGAACTCGGTGGCCGCAGTGCGCCAGGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 72 bp TCCTCGCGTCCCCACAGCCGCACACCTGCCTCTGGCTaGAGCAGCCTCTGGCTCCGGTGTCCTCTGGTTCGG +
Preference number: 6 (lower is better)
Translates to: SSRPHSRTPASG*SSLWLRCPLVR
Trigger: CCGAACCAGAGGACACCGGAGCCAGAGGCTGCTCAAGCCAGAGGCAGGTGTGCGGCTGTGGGGACGCGAGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 72 bp CGCTCGCGACGCTCCTGCAGCTGGCCTGGAGACACGTaGGGGTCGCGCAGGAAGCTCTTGAAGTGGCTCAGC +
Preference number: 6 (lower is better)
Translates to: RSRRSCSWPGDT*GSRRKLLKWLS
Trigger: GCTGAGCCACTTCAAGAGCTTCCTGCGCGACCCTCACGTGTCTCCAGGCCAGCTGCAGGAGCGTCGCGAGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 72 bp GGCCCTCCTCCCCCAGTAGGTCCCTGTACCTCCTCTTaGGCACCACGTACTTGGTGCCGTCGGGGTCCTGGC +
Preference number: 6 (lower is better)
Translates to: GPPPPVGPCTSS*APRTWCRRGPG
Trigger: GCCAGGACCCCGACGGCACCAAGTACGTGGTGCTCAAGAGGAGGTACAGGGACCTACTGGGGGAGGAGGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp CAGGGTCTCCGAGATCTTCTGGCAGCGGCTGTCCGGTaGACTGTCCCCAGCCGTTCTGCTGGCACTCCCAGC +
Preference number: 6 (lower is better)
Translates to: QGLRDLLAAAVR*TVPSRSAGTPS
Trigger: GCTGGGAGTGCCAGCAGAACGGCTGGGGACAGTCCACCGGACAGCCGCTGCCAGAAGATCTCGGAGACCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp GGAGGAAGTTGTCTGGCAACACCGACCAGGCGCGAGTaGGCGCCTGGATCTCGGGCTCAGGCACCTGCAGGT +
Preference number: 6 (lower is better)
Translates to: GGSCLATPTRRE*APGSRAQAPAG
Trigger: ACCTGCAGGTGCCTGAGCCCGAGATCCAGGCGCCCACTCGCGCCTGGTCGGTGTTGCCAGACAACTTCCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 90 bp TCCTCCCCCAGTAGGTCCCTGTACCTCCTCTTGAGCACCACGTACTaGGTGCCGTCGGGGTCCTGGCGCACTGCGGCCACCGAGTTCACG +
Preference number: 6 (lower is better)
Translates to: SSPSRSLYLLLSTTY*VPSGSWRTAATEFT
Trigger: CGTGAACTCGGTGGCCGCAGTGCGCCAGGACCCCGACGGCACCAAGTACGTGGTGCTCAAGAGGAGGTACAGGGACCTACTGGGGGAGGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 72 bp CAAAACAGCATCCACCCTTGGGCTGGGCAGGGCTCCTaGCTTGGAAGGTTTCCTGGACCGAGGTGGGCGCCG +
Preference number: 6 (lower is better)
Translates to: QNSIHPWAGQGS*LGRFPGPRWAP
Trigger: CGGCGCCCACCTCGGTCCAGGAAACCTTCCAAGGCAGGAGCCCTGCCCAGCCCAAGGGTGGATGCTGTTTTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp TTGTCTGGCAACACCGACCAGGCGCGAGTGGGCGCCTaGATCTCGGGCTCAGGCACCTGCAGGTATCTGGCT +
Preference number: 6 (lower is better)
Translates to: LSGNTDQARVGA*ISGSGTCRYLA
Trigger: AGCCAGATACCTGCAGGTGCCTGAGCCCGAGATCCAGGCGCCCACTCGCGCCTGGTCGGTGTTGCCAGACAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 72 bp AGTAGGTCCCTGTACCTCCTCTTGAGCACCACGTACTaGGTGCCGTCGGGGTCCTGGCGCACTGCGGCCACC +
Preference number: 6 (lower is better)
Translates to: SRSLYLLLSTTY*VPSGSWRTAAT
Trigger: GGTGGCCGCAGTGCGCCAGGACCCCGACGGCACCAAGTACGTGGTGCTCAAGAGGAGGTACAGGGACCTACT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 90 bp GTCTCCGAGACCCCAAAGGCGGTTTCTGAAGGTAGCTGGAGGAAGTaGTCTGGCAACACCGACCAGGCGCGAGTGGGCGCCTGGATCTCG +
Preference number: 6 (lower is better)
Translates to: VSETPKAVSEGSWRK*SGNTDQARVGAWIS
Trigger: CGAGATCCAGGCGCCCACTCGCGCCTGGTCGGTGTTGCCAGACAACTTCCTCCAGCTACCTTCAGAAACCGCCTTTGGGGTCTCGGAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 72 bp GGGCTCAGGCACCTGCAGGTATCTGGCTACCCACTCTaGAGTGCGCTGGTGCTGTTGCTGCAGCTGCTGGGT +
Preference number: 6 (lower is better)
Translates to: GLRHLQVSGYPL*SALVLLLQLLG
Trigger: ACCCAGCAGCTGCAGCAACAGCACCAGCGCACTCAAGAGTGGGTAGCCAGATACCTGCAGGTGCCTGAGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 72 bp TTGAGTGCGCTGGTGCTGTTGCTGCAGCTGCTGGGTTaGATGGTTCGGGGAGCCGGCGGTAAACAGCTCCAG +
Preference number: 6 (lower is better)
Translates to: LSALVLLLQLLG*MVRGAGGKQLQ
Trigger: CTGGAGCTGTTTACCGCCGGCTCCCCGAACCATTCAACCCAGCAGCTGCAGCAACAGCACCAGCGCACTCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 72 bp GGCTCAGGCACCTGCAGGTATCTGGCTACCCACTCTTaGGTGCGCTGGTGCTGTTGCTGCAGCTGCTGGGTT +
Preference number: 6 (lower is better)
Translates to: GSGTCRYLATHS*VRWCCCCSCWV
Trigger: AACCCAGCAGCTGCAGCAACAGCACCAGCGCACTCAAGAGTGGGTAGCCAGATACCTGCAGGTGCCTGAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp CAGGGCTCCTGCCTTGGAAGGTTTCCTGGACCGAGGTaGGCGCCGACTCCTTTTCCACAAGTCCTCATCAGG +
Preference number: 6 (lower is better)
Translates to: QGSCLGRFPGPR*APTPFPQVLIR
Trigger: CCTGATGAGGACTTGTGGAAAAGGAGTCGGCGCCCACCTCGGTCCAGGAAACCTTCCAAGGCAGGAGCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 72 bp GGTTGCAGCCCCTCTTCGGGGGTTCCGGGAGATTCTTaGGGTCCACTGCTGCTCTCCTCACTTCCATGGCTC +
Preference number: 6 (lower is better)
Translates to: GCSPSSGVPGDS*GPLLLSSLPWL
Trigger: GAGCCATGGAAGTGAGGAGAGCAGCAGTGGACCCAAAGAATCTCCCGGAACCCCCGAAGAGGGGCTGCAACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 72 bp CCTGTTCGAGAGCTCCTCCTGACAGACCTTCGGAACTaGAGGGCAGGGAAGGGCTCTTGGGGGTGGTCTCCA +
Preference number: 6 (lower is better)
Translates to: PVRELLLTDLRN*RAGKGSWGWSP
Trigger: TGGAGACCACCCCCAAGAGCCCTTCCCTGCCCTCAAGTTCCGAAGGTCTGTCAGGAGGAGCTCTCGAACAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 90 bp GCTCCTCCTGACAGACCTTCGGAACTTGAGGGCAGGGAAGGGCTCTaGGGGGTGGTCTCCAAGGCTTTTAGCCACTGTTGGGACCTTCCG +
Preference number: 6 (lower is better)
Translates to: APPDRPSELEGREGL*GVVSKAFSHCWDLP
Trigger: CGGAAGGTCCCAACAGTGGCTAAAAGCCTTGGAGACCACCCCCAAGAGCCCTTCCCTGCCCTCAAGTTCCGAAGGTCTGTCAGGAGGAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 72 bp GCCAGCTGGGGGTCCTCCCAGAACAAAGTCAGCACGTaGAGCCAGGAACCACTGGCAAGCCTCACAATCCAC +
Preference number: 6 (lower is better)
Translates to: ASWGSSQNKVST*SQEPLASLTIH
Trigger: GTGGATTGTGAGGCTTGCCAGTGGTTCCTGGCTTCACGTGCTGACTTTGTTCTGGGAGGACCCCCAGCTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp GTCTCCGAGACCCCAAAGGCGGTTTCTGAAGGTAGCTaGAGGAAGTTGTCTGGCAACACCGACCAGGCGCGA +
Preference number: 6 (lower is better)
Translates to: VSETPKAVSEGS*RKLSGNTDQAR
Trigger: TCGCGCCTGGTCGGTGTTGCCAGACAACTTCCTCCAGCTACCTTCAGAAACCGCCTTTGGGGTCTCGGAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp GTTGCAGCCCCTCTTCGGGGGTTCCGGGAGATTCTTTaGGTCCACTGCTGCTCTCCTCACTTCCATGGCTCT +
Preference number: 6 (lower is better)
Translates to: VAAPLRGFREIL*VHCCSPHFHGS
Trigger: AGAGCCATGGAAGTGAGGAGAGCAGCAGTGGACCCAAAGAATCTCCCGGAACCCCCGAAGAGGGGCTGCAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 90 bp CTCAAGACAGGTTGCAGCCCCTCTTCGGGGGTTCCGGGAGATTCTTaGGGTCCACTGCTGCTCTCCTCACTTCCATGGCTCTCTTGCTCC +
Preference number: 6 (lower is better)
Translates to: LKTGCSPSSGVPGDS*GPLLLSSLPWLSCS
Trigger: GGAGCAAGAGAGCCATGGAAGTGAGGAGAGCAGCAGTGGACCCAAAGAATCTCCCGGAACCCCCGAAGAGGGGCTGCAACCTGTCTTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp TCCGAGGTCCCGCCGGATCAGGCAAGGGCTGTCGTTTaGTGGCAAAAACAGATCCTCAACTGGATCCCTGAG +
Preference number: 6 (lower is better)
Translates to: SEVPPDQARAVV*WQKQILNWIPE
Trigger: CTCAGGGATCCAGTTGAGGATCTGTTTTTGCCACCAAACGACAGCCCTTGCCTGATCCGGCGGGACCTCGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp CCAATTTCTGTACCAAAACAGCATCCACCCTTGGGCTaGGCAGGGCTCCTGCCTTGGAAGGTTTCCTGGACC +
Preference number: 6 (lower is better)
Translates to: PISVPKQHPPLG*AGLLPWKVSWT
Trigger: GGTCCAGGAAACCTTCCAAGGCAGGAGCCCTGCCCAGCCCAAGGGTGGATGCTGTTTTGGTACAGAAATTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 72 bp GTCTGTGGGGTATCAAGGCTGCAGATCCATCCCTGCTaGGGATCCATGAAGAGTGTGGCTGACTGGCCACAG +
Preference number: 6 (lower is better)
Translates to: VCGVSRLQIHPC*GSMKSVADWPQ
Trigger: CTGTGGCCAGTCAGCCACACTCTTCATGGATCCCAAGCAGGGATGGATCTGCAGCCTTGATACCCCACAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp CCCAGAACAAAGTCAGCACGTGAAGCCAGGAACCACTaGCAAGCCTCACAATCCACTCATGCTCCCTGGTGT +
Preference number: 6 (lower is better)
Translates to: PRTKSAREARNH*QASQSTHAPWC
Trigger: ACACCAGGGAGCATGAGTGGATTGTGAGGCTTGCCAGTGGTTCCTGGCTTCACGTGCTGACTTTGTTCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 72 bp GGGTCCACTGCTGCTCTCCTCACTTCCATGGCTCTCTaGCTCCACAAAGTCATTCAGATCCTGGAGGGACAG +
Preference number: 6 (lower is better)
Translates to: GSTAALLTSMAL*LHKVIQILEGQ
Trigger: CTGTCCCTCCAGGATCTGAATGACTTTGTGGAGCAAGAGAGCCATGGAAGTGAGGAGAGCAGCAGTGGACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 90 bp GGGCTCCAGAGACCAAATCCTGAAGGGCACACAGGTCACCATGCTTaGCTATCCAGTGCAAGGCTGTGTACCCAGTCAGGAAGTCTCTGT +
Preference number: 6 (lower is better)
Translates to: GLQRPNPEGHTGHHA*LSSARLCTQSGSLC
Trigger: ACAGAGACTTCCTGACTGGGTACACAGCCTTGCACTGGATAGCAAAGCATGGTGACCTGTGTGCCCTTCAGGATTTGGTCTCTGGAGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CCA 72 bp CGTTTCCCCAGAGACGTTACTGTTCAGATACTGCCATaGCTTCTTGCCACTGCAGTCCCGAATGTTCACCCG +
Preference number: 6 (lower is better)
Translates to: RFPRDVTVQILP*LLATAVPNVHP
Trigger: CGGGTGAACATTCGGGACTGCAGTGGCAAGAAGCCATGGCAGTATCTGAACAGTAACGTCTCTGGGGAAACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 90 bp CACGTTTCCCCAGAGACGTTACTGTTCAGATACTGCCATGGCTTCTaGCCACTGCAGTCCCGAATGTTCACCCGAGAAGCCAGTCTTTGC +
Preference number: 6 (lower is better)
Translates to: HVSPETLLFRYCHGF*PLQSRMFTREASLC
Trigger: GCAAAGACTGGCTTCTCGGGTGAACATTCGGGACTGCAGTGGCAAGAAGCCATGGCAGTATCTGAACAGTAACGTCTCTGGGGAAACGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 72 bp TATCAAGGCTGCAGATCCATCCCTGCTTGGGATCCATaGAGAGTGTGGCTGACTGGCCACAGCATTAGCATC +
Preference number: 6 (lower is better)
Translates to: YQGCRSIPAWDP*RVWLTGHSISI
Trigger: GATGCTAATGCTGTGGCCAGTCAGCCACACTCTTCATGGATCCCAAGCAGGGATGGATCTGCAGCCTTGATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 72 bp GGGCGCCGACTCCTTTTCCACAAGTCCTCATCAGGATaGTCCTCGTCTGAGGAAGAAGGAGATTTGGTTCTT +
Preference number: 6 (lower is better)
Translates to: GRRLLFHKSSSG*SSSEEEGDLVL
Trigger: AAGAACCAAATCTCCTTCTTCCTCAGACGAGGAGCATCCTGATGAGGACTTGTGGAAAAGGAGTCGGCGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 72 bp CAGAGACGTTACTGTTCAGATACTGCCATGGCTTCTTaGCACTGCAGTCCCGAATGTTCACCCGAGAAGCCA +
Preference number: 6 (lower is better)
Translates to: QRRYCSDTAMAS*HCSPECSPEKP
Trigger: TGGCTTCTCGGGTGAACATTCGGGACTGCAGTGGCAAGAAGCCATGGCAGTATCTGAACAGTAACGTCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 90 bp AGATTCTTTGGGTCCACTGCTGCTCTCCTCACTTCCATGGCTCTCTaGCTCCACAAAGTCATTCAGATCCTGGAGGGACAGCTGACAACG +
Preference number: 6 (lower is better)
Translates to: RFFGSTAALLTSMAL*LHKVIQILEGQLTT
Trigger: CGTTGTCAGCTGTCCCTCCAGGATCTGAATGACTTTGTGGAGCAAGAGAGCCATGGAAGTGAGGAGAGCAGCAGTGGACCCAAAGAATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 90 bp CACAAGTCCTCATCAGGATGCTCCTCGTCTGAGGAAGAAGGAGATTaGGTTCTTCCTGTTCGAGAGCTCCTCCTGACAGACCTTCGGAAC +
Preference number: 6 (lower is better)
Translates to: HKSSSGCSSSEEEGD*VLPVRELLLTDLRN
Trigger: GTTCCGAAGGTCTGTCAGGAGGAGCTCTCGAACAGGAAGAACCAAATCTCCTTCTTCCTCAGACGAGGAGCATCCTGATGAGGACTTGTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 72 bp GATCCATCCCTGCTTGGGATCCATGAAGAGTGTGGCTaGCTGGCCACAGCATTAGCATCTGCCAATTTCTGT +
Preference number: 6 (lower is better)
Translates to: DPSLLGIHEECG*LATALASANFC
Trigger: ACAGAAATTGGCAGATGCTAATGCTGTGGCCAGTCAGCCACACTCTTCATGGATCCCAAGCAGGGATGGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 72 bp AGCCACAACTGGACCTCACATTTACATCTAGTGCAATaGCCGCCTTCTGGGCTCCAGAGACCAAATCCTGAA +
Preference number: 6 (lower is better)
Translates to: SHNWTSHLHLVQ*PPSGLQRPNPE
Trigger: TTCAGGATTTGGTCTCTGGAGCCCAGAAGGCGGGCATTGCACTAGATGTAAATGTGAGGTCCAGTTGTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS GCA 72 bp CGTTACTGTTCAGATACTGCCATGGCTTCTTGCCACTaGAGTCCCGAATGTTCACCCGAGAAGCCAGTCTTT +
Preference number: 6 (lower is better)
Translates to: RYCSDTAMASCH*SPECSPEKPVF
Trigger: AAAGACTGGCTTCTCGGGTGAACATTCGGGACTGCAGTGGCAAGAAGCCATGGCAGTATCTGAACAGTAACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS CAA 72 bp TCATCAGGATGCTCCTCGTCTGAGGAAGAAGGAGATTaGGTTCTTCCTGTTCGAGAGCTCCTCCTGACAGAC +
Preference number: 6 (lower is better)
Translates to: SSGCSSSEEEGD*VLPVRELLLTD
Trigger: GTCTGTCAGGAGGAGCTCTCGAACAGGAAGAACCAAATCTCCTTCTTCCTCAGACGAGGAGCATCCTGATGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 72 bp CCTTTTCCACAAGTCCTCATCAGGATGCTCCTCGTCTaGGGAAGAAGGAGATTTGGTTCTTCCTGTTCGAGA +
Preference number: 6 (lower is better)
Translates to: PFPQVLIRMLLV*GRRRFGSSCSR
Trigger: TCTCGAACAGGAAGAACCAAATCTCCTTCTTCCTCAGACGAGGAGCATCCTGATGAGGACTTGTGGAAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6
CDS TCA 72 bp TTCTCATATTGGCTGGCCAATTTCCATTTGTTGTGCTaGGTTTTGAGCAAAGCAGCCAAGGAAGTCTTCCGG +
Preference number: 6 (lower is better)
Translates to: FSYWLANFHLLC*VLSKAAKEVFR
Trigger: CCGGAAGACTTCCTTGGCTGCTTTGCTCAAAACTCAGCACAACAAATGGAAATTGGCCAGCCAATATGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061328.6