Pregenerated sensors for SOWAHA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044352Ensembl transcript IDs: ENSMUST00000104955.4
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCACCCAGAGGCCTCTGGTTAACACCTCCAGGGGCCAGACCAGCTaGTGCCCCTTAACCTTTGACCCTAAACTTCAAGTCTCCTCCCAA | + |
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Preference number: 1 (lower is better) Translates to: STQRPLVNTSRGQTS*CPLTFDPKLQVSSQ Trigger: TTGGGAGGAGACTTGAAGTTTAGGGTCAAAGGTTAAGGGGCAGCAGCTGGTCTGGCCCCTGGAGGTGTTAACCAGAGGCCTCTGGGTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR GCA 90 bp | ACCCAGAGGCCTCTGGTTAACACCTCCAGGGGCCAGACCAGCTGCTaGCCCTTAACCTTTGACCCTAAACTTCAAGTCTCCTCCCAAGAT | + |
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Preference number: 1 (lower is better) Translates to: TQRPLVNTSRGQTSC*PLTFDPKLQVSSQD Trigger: ATCTTGGGAGGAGACTTGAAGTTTAGGGTCAAAGGTTAAGGGGCAGCAGCTGGTCTGGCCCCTGGAGGTGTTAACCAGAGGCCTCTGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR TCA 90 bp | CTTAAGTCGCCATCTTTGAACATCTGGAAAGCCACCCTCTACTTCTaGTTTGGGAATGTGTCCACCCAGAGGCCTCTGGTTAACACCTCC | + |
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Preference number: 1 (lower is better) Translates to: LKSPSLNIWKATLYF*FGNVSTQRPLVNTS Trigger: GGAGGTGTTAACCAGAGGCCTCTGGGTGGACACATTCCCAAATCAGAAGTAGAGGGTGGCTTTCCAGATGTTCAAAGATGGCGACTTAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR CCA 90 bp | AGAGATCTGCCTGTCCCTGCCTCCCAAGTGCTAGGATTAAAAACATaGCTCACAAGCCCAACCATACCCTTGTTTCTCAATATTCGACAT | + |
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Preference number: 1 (lower is better) Translates to: RDLPVPASQVLGLKT*LTSPTIPLFLNIRH Trigger: ATGTCGAATATTGAGAAACAAGGGTATGGTTGGGCTTGTGAGCCATGTTTTTAATCCTAGCACTTGGGAGGCAGGGACAGGCAGATCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR TCA 90 bp | AAGCATCAAATTACAAAGCCACTGCAGATCTTAAGTCGCCATCTTTaGACATCTGGAAAGCCACCCTCTACTTCTGATTTGGGAATGTGT | + |
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Preference number: 1 (lower is better) Translates to: KHQITKPLQILSRHL*TSGKPPSTSDLGMC Trigger: ACACATTCCCAAATCAGAAGTAGAGGGTGGCTTTCCAGATGTTCAAAGATGGCGACTTAAGATCTGCAGTGGCTTTGTAATTTGATGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR-3UTR CCA 90 bp | CCCTGCCTCCCAAGTGCTAGGATTAAAAACATGGCTCACAAGCCCAACCATACCCCATCTTTGAACATCTaGAAAGCCACCCTCTACTTC | + |
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Preference number: 2 (lower is better) Translates to: PCLPSARIKNMAHKPNHTPSLNI*KATLYF Trigger: GAAGTAGAGGGTGGCTTTCCAGATGTTCAAAGATGG...GGTATGGTTGGGCTTGTGAGCCATGTTTTTAATCCTAGCACTTGGGAGGCAGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR-3UTR GCA 90 bp | GAAGCCATACTCCATGTGCCACAAGAACCATTCAGTATGACTGATGACATGCAAGGCTGGCCTAGAACTTaGTCTGTAGACCAGGTTGGT | + |
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Preference number: 2 (lower is better) Translates to: EAILHVPQEPFSMTDDMQGWPRT*SVDQVG Trigger: ACCAACCTGGTCTACAGAGCAAGTTCTAGGCCAGCC...TTGCATGTCATCAGTCATACTGAATGGTTCTTGTGGCACATGGAGTATGGCTTC 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR-3UTR CCA 90 bp | TTGACGATTAGGATGCCTTTAATGATTTCAAAGGTCTCACTGACAAATATAGGACTGTGTAGCCCTGGCTaGCCTAGAACTTGCTCTGTA | + |
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Preference number: 2 (lower is better) Translates to: LTIRMPLMISKVSLTNIGLCSPG*PRTCSV Trigger: TACAGAGCAAGTTCTAGGCCAGCCAGGGCTACACAG...TCCTATATTTGTCAGTGAGACCTTTGAAATCATTAAAGGCATCCTAATCGTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR GCA 72 bp | CCTCTGGTTAACACCTCCAGGGGCCAGACCAGCTGCTaGCCCTTAACCTTTGACCCTAAACTTCAAGTCTCC | + |
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Preference number: 3 (lower is better) Translates to: PLVNTSRGQTSC*PLTFDPKLQVS Trigger: GGAGACTTGAAGTTTAGGGTCAAAGGTTAAGGGGCAGCAGCTGGTCTGGCCCCTGGAGGTGTTAACCAGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR GCA 72 bp | AGGCCTCTGGTTAACACCTCCAGGGGCCAGACCAGCTaGTGCCCCTTAACCTTTGACCCTAAACTTCAAGTC | + |
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Preference number: 3 (lower is better) Translates to: RPLVNTSRGQTS*CPLTFDPKLQV Trigger: GACTTGAAGTTTAGGGTCAAAGGTTAAGGGGCAGCAGCTGGTCTGGCCCCTGGAGGTGTTAACCAGAGGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR TCA 72 bp | CCATCTTTGAACATCTGGAAAGCCACCCTCTACTTCTaGTTTGGGAATGTGTCCACCCAGAGGCCTCTGGTT | + |
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Preference number: 3 (lower is better) Translates to: PSLNIWKATLYF*FGNVSTQRPLV Trigger: AACCAGAGGCCTCTGGGTGGACACATTCCCAAATCAGAAGTAGAGGGTGGCTTTCCAGATGTTCAAAGATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR GCA 72 bp | AGGTTGGTCTTAAACTCACAGAGATCTGCCTGTCCCTaGCTCCCAAGTGCTAGGATTAAAAACATGGCTCAC | + |
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Preference number: 3 (lower is better) Translates to: RLVLNSQRSACP*LPSARIKNMAH Trigger: GTGAGCCATGTTTTTAATCCTAGCACTTGGGAGGCAGGGACAGGCAGATCTCTGTGAGTTTAAGACCAACCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR CCA 72 bp | CCTGTCCCTGCCTCCCAAGTGCTAGGATTAAAAACATaGCTCACAAGCCCAACCATACCCTTGTTTCTCAAT | + |
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Preference number: 3 (lower is better) Translates to: PVPASQVLGLKT*LTSPTIPLFLN Trigger: ATTGAGAAACAAGGGTATGGTTGGGCTTGTGAGCCATGTTTTTAATCCTAGCACTTGGGAGGCAGGGACAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR GCA 72 bp | CTAAACTTCAAGTCTCCTCCCAAGATCGGGCATGACTaGTTGGTTTCTCTAACGGGGGAAAAAGAATCCCAT | + |
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Preference number: 3 (lower is better) Translates to: LNFKSPPKIGHD*LVSLTGEKESH Trigger: ATGGGATTCTTTTTCCCCCGTTAGAGAAACCAAGCAGTCATGCCCGATCTTGGGAGGAGACTTGAAGTTTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR CCA 72 bp | GCACGTCAAATTTCAAACAGAAGGTGGAGGCCCATCTaGTTACACCAGGCTGCAATAGATAAAATCGGAAAT | + |
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Preference number: 3 (lower is better) Translates to: ARQISNRRWRPI*LHQAAIDKIGN Trigger: ATTTCCGATTTTATCTATTGCAGCCTGGTGTAACCAGATGGGCCTCCACCTTCTGTTTGAAATTTGACGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR TCA 72 bp | ATTACAAAGCCACTGCAGATCTTAAGTCGCCATCTTTaGACATCTGGAAAGCCACCCTCTACTTCTGATTTG | + |
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Preference number: 3 (lower is better) Translates to: ITKPLQILSRHL*TSGKPPSTSDL Trigger: CAAATCAGAAGTAGAGGGTGGCTTTCCAGATGTTCAAAGATGGCGACTTAAGATCTGCAGTGGCTTTGTAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR CCA 90 bp | TGTCCACCCAGAGGCCTCTGGTTAACACCTCCAGGGGCCAGACCAGCTGCTGCCCATCGGGGAGCCCCGTaGGCTCGGCTCCTCCGAGCG | + |
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Preference number: 4 (lower is better) Translates to: CPPRGLWLTPPGARPAAAHRGAP*ARLLRA Trigger: CGCTCGGAGGAGCCGAGCCCACGGGGCTCCCCGATG...GGCAGCAGCTGGTCTGGCCCCTGGAGGTGTTAACCAGAGGCCTCTGGGTGGACA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR TCA 90 bp | TGTCCACCCAGAGGCCTCTGGTTAACACCTCCAGGGGCCAGACCAGCTGCTGCCTCAGCACCACGAACTTaGCCCCATCCAGCTCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: CPPRGLWLTPPGARPAAASAPRT*PHPAPS Trigger: TGAAGGAGCTGGATGGGGTCAAGTTCGTGGTGCTGA...GGCAGCAGCTGGTCTGGCCCCTGGAGGTGTTAACCAGAGGCCTCTGGGTGGACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR GCA 90 bp | AGGCCTCTGGTTAACACCTCCAGGGGCCAGACCAGCTGCTGCCCCTTAACCTTTAGCGCACCGGCAGCATaGAAGGCTTCTGCGGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: RPLVNTSRGQTSCCPLTFSAPAA*KASAVA Trigger: TGCCACCGCAGAAGCCTTGCATGCTGCCGGTGCGCT...AAAGGTTAAGGGGCAGCAGCTGGTCTGGCCCCTGGAGGTGTTAACCAGAGGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR CCA 90 bp | CCCTGCCTCCCAAGTGCTAGGATTAAAAACATGGCTCACAAGCCCAACCATACCGCCACTCGTGCTCCGTaGGCTCCAGGGGCACCGCGG | + |
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Preference number: 4 (lower is better) Translates to: PCLPSARIKNMAHKPNHTATRAP*APGAPR Trigger: CCGCGGTGCCCCTGGAGCCCACGGAGCACGAGTGGC...GGTATGGTTGGGCTTGTGAGCCATGTTTTTAATCCTAGCACTTGGGAGGCAGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR GCA 90 bp | CCCTCTACTTCTGATTTGGGAATGTGTCCACCCAGAGGCCTCTGGTTAACACCTTCGGAGTTGCGCACCTaGCCGCCGTGCTCCCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: PSTSDLGMCPPRGLWLTPSELRT*PPCSRR Trigger: CCTGCGGGAGCACGGCGGGCAGGTGCGCAACTCCGA...AGGTGTTAACCAGAGGCCTCTGGGTGGACACATTCCCAAATCAGAAGTAGAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR GCA 90 bp | CCCTGCCTCCCAAGTGCTAGGATTAAAAACATGGCTCACAAGCCCAACCATACCTTGCGCCGTGGGAGGTaGAGGCTCCGGGCCTGGCGA | + |
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Preference number: 4 (lower is better) Translates to: PCLPSARIKNMAHKPNHTLRRGR*RLRAWR Trigger: TCGCCAGGCCCGGAGCCTGCACCTCCCACGGCGCAA...GGTATGGTTGGGCTTGTGAGCCATGTTTTTAATCCTAGCACTTGGGAGGCAGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR GCA 90 bp | TGCTGCCCCTTAACCTTTGACCCTAAACTTCAAGTCTCCTCCCAAGATCGGGCACGCACCAGCCACTCGTaGTCCGTGGGCTCCAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: CCPLTFDPKLQVSSQDRARTSHS*SVGSRG Trigger: GCCCCTGGAGCCCACGGAGCACGAGTGGCTGGTGCG...TGCCCGATCTTGGGAGGAGACTTGAAGTTTAGGGTCAAAGGTTAAGGGGCAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR CCA 90 bp | TGCTGCCCCTTAACCTTTGACCCTAAACTTCAAGTCTCCTCCCAAGATCGGGCAAGGGCTGGAGGGGAGTaGGGCCTCGGGTCCTTCCGG | + |
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Preference number: 4 (lower is better) Translates to: CCPLTFDPKLQVSSQDRARAGGE*GLGSFR Trigger: CCGGAAGGACCCGAGGCCCCACTCCCCTCCAGCCCT...TGCCCGATCTTGGGAGGAGACTTGAAGTTTAGGGTCAAAGGTTAAGGGGCAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR CCA 90 bp | TGTCCCTGCCTCCCAAGTGCTAGGATTAAAAACATGGCTCACAAGCCCAACCATCTGGGCCAGCGCGGCTaGCACTCCAGGGCTGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: CPCLPSARIKNMAHKPNHLGQRG*HSRAGG Trigger: CCCTCCAGCCCTGGAGTGCCAGCCGCGCTGGCCCAG...ATGGTTGGGCTTGTGAGCCATGTTTTTAATCCTAGCACTTGGGAGGCAGGGACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR CCA 90 bp | TGCTGCCCCTTAACCTTTGACCCTAAACTTCAAGTCTCCTCCCAAGATCGGGCACGGCCGGGTCCCAGGTaGAGTCCCAGACCCGACTCC | + |
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Preference number: 4 (lower is better) Translates to: CCPLTFDPKLQVSSQDRARPGPR*SPRPDS Trigger: GGAGTCGGGTCTGGGACTCCACCTGGGACCCGGCCG...TGCCCGATCTTGGGAGGAGACTTGAAGTTTAGGGTCAAAGGTTAAGGGGCAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR TCA 90 bp | TGCTGCCCCTTAACCTTTGACCCTAAACTTCAAGTCTCCTCCCAAGATCGGGCACGTCCAGCAGCGGCTTaGAGCGGCTCAGCAGCTCGG | + |
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Preference number: 4 (lower is better) Translates to: CCPLTFDPKLQVSSQDRARPAAA*SGSAAR Trigger: CCGAGCTGCTGAGCCGCTTCAAGCCGCTGCTGGACG...TGCCCGATCTTGGGAGGAGACTTGAAGTTTAGGGTCAAAGGTTAAGGGGCAGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR TCA 90 bp | CCCTGCCTCCCAAGTGCTAGGATTAAAAACATGGCTCACAAGCCCAACCATACCCTCCGGCGGTTCTCCTaGTCGCTGTGGGGAGTGGGG | + |
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Preference number: 4 (lower is better) Translates to: PCLPSARIKNMAHKPNHTLRRFS*SLWGVG Trigger: CCCCACTCCCCACAGCGATCAGGAGAACCGCCGGAG...GGTATGGTTGGGCTTGTGAGCCATGTTTTTAATCCTAGCACTTGGGAGGCAGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR GCA 90 bp | CCCTGCCTCCCAAGTGCTAGGATTAAAAACATGGCTCACAAGCCCAACCATACCGCATCCTCGTGGCCGTaGAGAGCCGCCAGGTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: PCLPSARIKNMAHKPNHTASSWP*RAARCS Trigger: GCTGCACCTGGCGGCTCTGCACGGCCACGAGGATGC...GGTATGGTTGGGCTTGTGAGCCATGTTTTTAATCCTAGCACTTGGGAGGCAGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR GCA 90 bp | TCAAACAGAAGGTGGAGGCCCATCTGGTTACACCAGGCTGCAATAGATAAAATCCGCACCTGCCCGCCGTaGTCCCGCAGGAAGCCCAAC | + |
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Preference number: 4 (lower is better) Translates to: SNRRWRPIWLHQAAIDKIRTCPP*SRRKPN Trigger: GTTGGGCTTCCTGCGGGAGCACGGCGGGCAGGTGCG...GATTTTATCTATTGCAGCCTGGTGTAACCAGATGGGCCTCCACCTTCTGTTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR GCA 90 bp | TGCTGCCCCTTAACCTTTGACCCTAAACTTCAAGTCTCCTCCCAAGATCGGGCAACACAAGGCTCCCACTaGCACCACTGGCCGCATCAG | + |
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Preference number: 4 (lower is better) Translates to: CCPLTFDPKLQVSSQDRATQGSH*HHWPHQ Trigger: CTGATGCGGCCAGTGGTGGCAGTGGGAGCCTTGTGT...TGCCCGATCTTGGGAGGAGACTTGAAGTTTAGGGTCAAAGGTTAAGGGGCAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR GCA 90 bp | TGTCCCTGCCTCCCAAGTGCTAGGATTAAAAACATGGCTCACAAGCCCAACCATGCTACCTGCACGGGGTaGCGAGACACAAGGCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: CPCLPSARIKNMAHKPNHATCTG*RDTRLP Trigger: TGGGAGCCTTGTGTCTCGGCACCCCGTGCAGGTAGC...ATGGTTGGGCTTGTGAGCCATGTTTTTAATCCTAGCACTTGGGAGGCAGGGACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR GCA 90 bp | TCAAACAGAAGGTGGAGGCCCATCTGGTTACACCAGGCTGCAATAGATAAAATCTCAGCAGCTCGGAGTTaGGCACCTGCCCGCCGTGCT | + |
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Preference number: 4 (lower is better) Translates to: SNRRWRPIWLHQAAIDKISAARS*APARRA Trigger: AGCACGGCGGGCAGGTGCGCAACTCCGAGCTGCTGA...GATTTTATCTATTGCAGCCTGGTGTAACCAGATGGGCCTCCACCTTCTGTTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR TCA 90 bp | TTGACGATTAGGATGCCTTTAATGATTTCAAAGGTCTCACTGACAAATATAGGACGCGGGACAGGCGCCTaGGATGCGGGGAACGGCCGG | + |
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Preference number: 4 (lower is better) Translates to: LTIRMPLMISKVSLTNIGRGTGA*DAGNGR Trigger: CCGGCCGTTCCCCGCATCTCAGGCGCCTGTCCCGCG...TCCTATATTTGTCAGTGAGACCTTTGAAATCATTAAAGGCATCCTAATCGTCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR TCA 90 bp | TGCTGCCCCTTAACCTTTGACCCTAAACTTCAAGTCTCCTCCCAAGATCGGGCACTTGCTGAAGGAACTTaGCTTCTTCAAGCCACGAGC | + |
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Preference number: 4 (lower is better) Translates to: CCPLTFDPKLQVSSQDRALAEGT*LLQATS Trigger: GCTCGTGGCTTGAAGAAGTCAAGTTCCTTCAGCAAG...TGCCCGATCTTGGGAGGAGACTTGAAGTTTAGGGTCAAAGGTTAAGGGGCAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR CCA 90 bp | TTGACGATTAGGATGCCTTTAATGATTTCAAAGGTCTCACTGACAAATATAGGACCCAACACCGCCGCCTaGCTCACCCCTGCGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: LTIRMPLMISKVSLTNIGPNTAA*LTPAAA Trigger: TGCTGCCGCAGGGGTGAGCCAGGCGGCGGTGTTGGG...TCCTATATTTGTCAGTGAGACCTTTGAAATCATTAAAGGCATCCTAATCGTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR GCA 90 bp | TCAAACAGAAGGTGGAGGCCCATCTGGTTACACCAGGCTGCAATAGATAAAATCACGTTGTTGACGAACTaGTTGAAGCGGTCCCTACGG | + |
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Preference number: 4 (lower is better) Translates to: SNRRWRPIWLHQAAIDKITLLTN*LKRSLR Trigger: CCGTAGGGACCGCTTCAAGCAGTTCGTCAACAACGT...GATTTTATCTATTGCAGCCTGGTGTAACCAGATGGGCCTCCACCTTCTGTTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| 3UTR CAA 72 bp | AACTTCAAGTCTCCTCCCAAGATCGGGCATGACTGCTaGGTTTCTCTAACGGGGGAAAAAGAATCCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: NFKSPPKIGHDC*VSLTGEKESHL Trigger: GAGATGGGATTCTTTTTCCCCCGTTAGAGAAACCAAGCAGTCATGCCCGATCTTGGGAGGAGACTTGAAGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS-3UTR TCA 90 bp | TCAAACAGAAGGTGGAGGCCCATCTGGTTACACCAGGCTGCAATAGATAAAATCCACCCAAGAACTTGCTaGAGGAACTTGACTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: SNRRWRPIWLHQAAIDKIHPRTC*RNLTSS Trigger: TGAAGAAGTCAAGTTCCTTCAGCAAGTTCTTGGGTG...GATTTTATCTATTGCAGCCTGGTGTAACCAGATGGGCCTCCACCTTCTGTTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS GCA 90 bp | GAGCCCCGTGGGCTCGGCTCCTCCGAGCGCTGCCGGCGCAGGCCCTaGTCCTCCGCGCGGATCCGCAGCGCCGCGGGGCCAGGAACGACG | + |
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Preference number: 5 (lower is better) Translates to: EPRGLGSSERCRRRP*SSARIRSAAGPGTT Trigger: CGTCGTTCCTGGCCCCGCGGCGCTGCGGATCCGCGCGGAGGAGCAGGGCCTGCGCCGGCAGCGCTCGGAGGAGCCGAGCCCACGGGGCTC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS CCA 90 bp | CGCACCTGCCCGCCGTGCTCCCGCAGGAAGCCCAACACCGCCGCCTaGCTCACCCCTGCGGCAGCAGCGGCGGCAGCGGCGGCGGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: RTCPPCSRRKPNTAA*LTPAAAAAAAAAAA Trigger: GGCAGCCGCCGCCGCTGCCGCCGCTGCTGCCGCAGGGGTGAGCCAGGCGGCGGTGTTGGGCTTCCTGCGGGAGCACGGCGGGCAGGTGCG 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS TCA 90 bp | CCGTGTCCGGACTCAGCAGGCGCGGACCGGCGCGGGACAGGCGCCTaGGATGCGGGGAACGGCCGGGTCCCAGGTGGAGTCCCAGACCCG | + |
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Preference number: 5 (lower is better) Translates to: PCPDSAGADRRGTGA*DAGNGRVPGGVPDP Trigger: CGGGTCTGGGACTCCACCTGGGACCCGGCCGTTCCCCGCATCTCAGGCGCCTGTCCCGCGCCGGTCCGCGCCTGCTGAGTCCGGACACGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS GCA 90 bp | TCCGGACTCAGCAGGCGCGGACCGGCGCGGGACAGGCGCCTGAGATaGGGGGAACGGCCGGGTCCCAGGTGGAGTCCCAGACCCGACTCC | + |
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Preference number: 5 (lower is better) Translates to: SGLSRRGPARDRRLR*GERPGPRWSPRPDS Trigger: GGAGTCGGGTCTGGGACTCCACCTGGGACCCGGCCGTTCCCCGCATCTCAGGCGCCTGTCCCGCGCCGGTCCGCGCCTGCTGAGTCCGGA 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS CCA 90 bp | GACTCCAACGACCGCTGGCCGTGCGCACCAGCCACTCGTGCTCCGTaGGCTCCAGGGGCACCGCGGGTGACGGTAGCGGCGCGACGGGCA | + |
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Preference number: 5 (lower is better) Translates to: DSNDRWPCAPATRAP*APGAPRVTVAARRA Trigger: TGCCCGTCGCGCCGCTACCGTCACCCGCGGTGCCCCTGGAGCCCACGGAGCACGAGTGGCTGGTGCGCACGGCCAGCGGTCGTTGGAGTC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS GCA 90 bp | GCGGGGCCAGGAACGACGCAGCGCACCGGCAGCATGCAAGGCTTCTaGGGTGGCACTTGCGCCGTGGGAGGTGCAGGCTCCGGGCCTGGC | + |
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Preference number: 5 (lower is better) Translates to: AGPGTTQRTGSMQGF*GGTCAVGGAGSGPG Trigger: GCCAGGCCCGGAGCCTGCACCTCCCACGGCGCAAGTGCCACCGCAGAAGCCTTGCATGCTGCCGGTGCGCTGCGTCGTTCCTGGCCCCGC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS CCA 90 bp | AGCGCACTGGGCCAGCGCGGCTGGCACTCCAGGGCTGGAGGGGAGTaGGGCCTCGGGTCCTTCCGGCGGCCGGGGCTTCTTTCTCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: SALGQRGWHSRAGGE*GLGSFRRPGLLSQH Trigger: GTGCTGAGAAAGAAGCCCCGGCCGCCGGAAGGACCCGAGGCCCCACTCCCCTCCAGCCCTGGAGTGCCAGCCGCGCTGGCCCAGTGCGCT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS CCA 90 bp | CGACTCCTCTACCGAAAGCCTCCGCAGGAGCATCGGGGAGCCCCGTaGGCTCGGCTCCTCCGAGCGCTGCCGGCGCAGGCCCTGCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: RLLYRKPPQEHRGAP*ARLLRALPAQALLL Trigger: GAGGAGCAGGGCCTGCGCCGGCAGCGCTCGGAGGAGCCGAGCCCACGGGGCTCCCCGATGCTCCTGCGGAGGCTTTCGGTAGAGGAGTCG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS GCA 90 bp | GGCTTGAAGCGGCTCAGCAGCTCGGAGTTGCGCACCTGCCCGCCGTaGTCCCGCAGGAAGCCCAACACCGCCGCCTGGCTCACCCCTGCG | + |
|
Preference number: 5 (lower is better) Translates to: GLKRLSSSELRTCPP*SRRKPNTAAWLTPA Trigger: CGCAGGGGTGAGCCAGGCGGCGGTGTTGGGCTTCCTGCGGGAGCACGGCGGGCAGGTGCGCAACTCCGAGCTGCTGAGCCGCTTCAAGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CCA 90 bp | ACAGTTGTCCTCCGCTGGGACAGCAGCGCACTGGGCCAGCGCGGCTaGCACTCCAGGGCTGGAGGGGAGTGGGGCCTCGGGTCCTTCCGG | + |
|
Preference number: 5 (lower is better) Translates to: TVVLRWDSSALGQRG*HSRAGGEWGLGSFR Trigger: CCGGAAGGACCCGAGGCCCCACTCCCCTCCAGCCCTGGAGTGCCAGCCGCGCTGGCCCAGTGCGCTGCTGTCCCAGCGGAGGACAACTGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS GCA 90 bp | TCCAGCAGCGGCTTGAAGCGGCTCAGCAGCTCGGAGTTGCGCACCTaGCCGCCGTGCTCCCGCAGGAAGCCCAACACCGCCGCCTGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: SSSGLKRLSSSELRT*PPCSRRKPNTAAWL Trigger: GAGCCAGGCGGCGGTGTTGGGCTTCCTGCGGGAGCACGGCGGGCAGGTGCGCAACTCCGAGCTGCTGAGCCGCTTCAAGCCGCTGCTGGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS GCA 90 bp | GCAAGAGCAACCCGTGCAGCTGGTGACTCCAACGACCGCTGGCCGTaGGCACCAGCCACTCGTGCTCCGTGGGCTCCAGGGGCACCGCGG | + |
|
Preference number: 5 (lower is better) Translates to: ARATRAAGDSNDRWP*APATRAPWAPGAPR Trigger: CCGCGGTGCCCCTGGAGCCCACGGAGCACGAGTGGCTGGTGCGCACGGCCAGCGGTCGTTGGAGTCACCAGCTGCACGGGTTGCTCTTGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CCA 90 bp | GCCAGGAACGACGCAGCGCACCGGCAGCATGCAAGGCTTCTGCGGTaGCACTTGCGCCGTGGGAGGTGCAGGCTCCGGGCCTGGCGACTC | + |
|
Preference number: 5 (lower is better) Translates to: ARNDAAHRQHARLLR*HLRRGRCRLRAWRL Trigger: GAGTCGCCAGGCCCGGAGCCTGCACCTCCCACGGCGCAAGTGCCACCGCAGAAGCCTTGCATGCTGCCGGTGCGCTGCGTCGTTCCTGGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS TCA 90 bp | TTGGCAGCCAGGCCGCGGTCCCGCAAGAGCAACCCGTGCAGCTGGTaGCTCCAACGACCGCTGGCCGTGCGCACCAGCCACTCGTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: LAARPRSRKSNPCSW*LQRPLAVRTSHSCS Trigger: GGAGCACGAGTGGCTGGTGCGCACGGCCAGCGGTCGTTGGAGTCACCAGCTGCACGGGTTGCTCTTGCGGGACCGCGGCCTGGCTGCCAA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS GCA 90 bp | ACGACGCAGCGCACCGGCAGCATGCAAGGCTTCTGCGGTGGCACTTaGGCCGTGGGAGGTGCAGGCTCCGGGCCTGGCGACTCTGTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: TTQRTGSMQGFCGGT*AVGGAGSGPGDSVL Trigger: GAGCACAGAGTCGCCAGGCCCGGAGCCTGCACCTCCCACGGCGCAAGTGCCACCGCAGAAGCCTTGCATGCTGCCGGTGCGCTGCGTCGT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CCA 90 bp | AGCGCACCGGCAGCATGCAAGGCTTCTGCGGTGGCACTTGCGCCGTaGGAGGTGCAGGCTCCGGGCCTGGCGACTCTGTGCTCGTCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: SAPAACKASAVALAP*EVQAPGLATLCSSG Trigger: CCCTGACGAGCACAGAGTCGCCAGGCCCGGAGCCTGCACCTCCCACGGCGCAAGTGCCACCGCAGAAGCCTTGCATGCTGCCGGTGCGCT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CCA 90 bp | GGTCCCGCAAGAGCAACCCGTGCAGCTGGTGACTCCAACGACCGCTaGCCGTGCGCACCAGCCACTCGTGCTCCGTGGGCTCCAGGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: GPARATRAAGDSNDR*PCAPATRAPWAPGA Trigger: TGCCCCTGGAGCCCACGGAGCACGAGTGGCTGGTGCGCACGGCCAGCGGTCGTTGGAGTCACCAGCTGCACGGGTTGCTCTTGCGGGACC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS GCA 90 bp | GCACTAGTGGTGGAGCTGAGGATGGTGGCGGCTACCTGCACGGGGTaGCGAGACACAAGGCTCCCACTGCCACCACTGGCCGCATCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: ALVVELRMVAATCTG*RDTRLPLPPLAASG Trigger: GCCTGATGCGGCCAGTGGTGGCAGTGGGAGCCTTGTGTCTCGGCACCCCGTGCAGGTAGCCGCCACCATCCTCAGCTCCACCACTAGTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS GCA 90 bp | CCCAGAAACGCACTAGTGGTGGAGCTGAGGATGGTGGCGGCTACCTaGACGGGGTGCCGAGACACAAGGCTCCCACTGCCACCACTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: PRNALVVELRMVAAT*TGCRDTRLPLPPLA Trigger: GGCCAGTGGTGGCAGTGGGAGCCTTGTGTCTCGGCACCCCGTGCAGGTAGCCGCCACCATCCTCAGCTCCACCACTAGTGCGTTTCTGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS TCA 90 bp | TCGGGGAGCCATGGGCGAGGCACCCAAGAACTTGCTGAAGGAACTTaGCTTCTTCAAGCCACGAGCCAGGTCCTGGAGCATCAAGTCATC | + |
|
Preference number: 5 (lower is better) Translates to: SGSHGRGTQELAEGT*LLQATSQVLEHQVI Trigger: GATGACTTGATGCTCCAGGACCTGGCTCGTGGCTTGAAGAAGTCAAGTTCCTTCAGCAAGTTCTTGGGTGCCTCGCCCATGGCTCCCCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS TCA 90 bp | GGCAGACTGGGCACTAAACCAGCTAAAGGTCCTGGAGTGGATCGATaGGAGATTTCGGTGAAGGACGGCAGGCCACCGCGAATCTTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: GRLGTKPAKGPGVDR*EISVKDGRPPRILV Trigger: GACCAAGATTCGCGGTGGCCTGCCGTCCTTCACCGAAATCTCTCATCGATCCACTCCAGGACCTTTAGCTGGTTTAGTGCCCAGTCTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS-3UTR CAA 90 bp | TCAAACAGAAGGTGGAGGCCCATCTGGTTACACCAGGCTGCAATAGATAAAATCCTCAGCAGCTCGGAGTaGCGCACCTGCCCGCCGTGC | + |
|
Preference number: 5 (lower is better) Translates to: SNRRWRPIWLHQAAIDKILSSSE*RTCPPC Trigger: GCACGGCGGGCAGGTGCGCAACTCCGAGCTGCTGAG...GATTTTATCTATTGCAGCCTGGTGTAACCAGATGGGCCTCCACCTTCTGTTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS-3UTR CAA 90 bp | GAAGCCATACTCCATGTGCCACAAGAACCATTCAGTATGACTGATGACATGCAAGACATGAAGTCGCGCTaGGCAGCCAGGCCGCGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: EAILHVPQEPFSMTDDMQDMKSR*AARPRS Trigger: GGACCGCGGCCTGGCTGCCAAGCGCGACTTCATGTC...TTGCATGTCATCAGTCATACTGAATGGTTCTTGTGGCACATGGAGTATGGCTTC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS-3UTR CAA 90 bp | GAAGCCATACTCCATGTGCCACAAGAACCATTCAGTATGACTGATGACATGCAACTCAGCACCACGAACTaGACCCCATCCAGCTCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: EAILHVPQEPFSMTDDMQLSTTN*TPSSSF Trigger: GAAGGAGCTGGATGGGGTCAAGTTCGTGGTGCTGAG...TTGCATGTCATCAGTCATACTGAATGGTTCTTGTGGCACATGGAGTATGGCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS-3UTR CAA 90 bp | TTGACGATTAGGATGCCTTTAATGATTTCAAAGGTCTCACTGACAAATATAGGATTGTTGACGAACTGCTaGAAGCGGTCCCTACGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: LTIRMPLMISKVSLTNIGLLTNC*KRSLRA Trigger: GGCCCGTAGGGACCGCTTCAAGCAGTTCGTCAACAA...TCCTATATTTGTCAGTGAGACCTTTGAAATCATTAAAGGCATCCTAATCGTCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS-3UTR CAA 90 bp | TTGACGATTAGGATGCCTTTAATGATTTCAAAGGTCTCACTGACAAATATAGGAACCACGGCCACGTTGTaGACGAACTGCTTGAAGCGG | + |
|
Preference number: 5 (lower is better) Translates to: LTIRMPLMISKVSLTNIGTTATL*TNCLKR Trigger: CCGCTTCAAGCAGTTCGTCAACAACGTGGCCGTGGT...TCCTATATTTGTCAGTGAGACCTTTGAAATCATTAAAGGCATCCTAATCGTCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS-3UTR CAA 90 bp | TTGACGATTAGGATGCCTTTAATGATTTCAAAGGTCTCACTGACAAATATAGGATTCACCACGGCCACGTaGTTGACGAACTGCTTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: LTIRMPLMISKVSLTNIGFTTAT*LTNCLK Trigger: CTTCAAGCAGTTCGTCAACAACGTGGCCGTGGTGAA...TCCTATATTTGTCAGTGAGACCTTTGAAATCATTAAAGGCATCCTAATCGTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CAA 90 bp | CTACGGGCCGCGCGGCCCCGTGGGTCCCCAGCGTCCAGCAGCGGCTaGAAGCGGCTCAGCAGCTCGGAGTTGCGCACCTGCCCGCCGTGC | + |
|
Preference number: 6 (lower is better) Translates to: LRAARPRGSPASSSG*KRLSSSELRTCPPC Trigger: GCACGGCGGGCAGGTGCGCAACTCCGAGCTGCTGAGCCGCTTCAAGCCGCTGCTGGACGCTGGGGACCCACGGGGCCGCGCGGCCCGTAG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CCA 72 bp | GGCCAGCGCGGCTGGCACTCCAGGGCTGGAGGGGAGTaGGGCCTCGGGTCCTTCCGGCGGCCGGGGCTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: GQRGWHSRAGGE*GLGSFRRPGLL Trigger: AAGAAGCCCCGGCCGCCGGAAGGACCCGAGGCCCCACTCCCCTCCAGCCCTGGAGTGCCAGCCGCGCTGGCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CCA 72 bp | CTCCGCTGGGACAGCAGCGCACTGGGCCAGCGCGGCTaGCACTCCAGGGCTGGAGGGGAGTGGGGCCTCGGG | + |
|
Preference number: 6 (lower is better) Translates to: LRWDSSALGQRG*HSRAGGEWGLG Trigger: CCCGAGGCCCCACTCCCCTCCAGCCCTGGAGTGCCAGCCGCGCTGGCCCAGTGCGCTGCTGTCCCAGCGGAG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CCA 72 bp | GACCGCTGGCCGTGCGCACCAGCCACTCGTGCTCCGTaGGCTCCAGGGGCACCGCGGGTGACGGTAGCGGCG | + |
|
Preference number: 6 (lower is better) Translates to: DRWPCAPATRAP*APGAPRVTVAA Trigger: CGCCGCTACCGTCACCCGCGGTGCCCCTGGAGCCCACGGAGCACGAGTGGCTGGTGCGCACGGCCAGCGGTC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS TCA 72 bp | GACTCAGCAGGCGCGGACCGGCGCGGGACAGGCGCCTaGGATGCGGGGAACGGCCGGGTCCCAGGTGGAGTC | + |
|
Preference number: 6 (lower is better) Translates to: DSAGADRRGTGA*DAGNGRVPGGV Trigger: GACTCCACCTGGGACCCGGCCGTTCCCCGCATCTCAGGCGCCTGTCCCGCGCCGGTCCGCGCCTGCTGAGTC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS GCA 72 bp | AGCAGGCGCGGACCGGCGCGGGACAGGCGCCTGAGATaGGGGGAACGGCCGGGTCCCAGGTGGAGTCCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: SRRGPARDRRLR*GERPGPRWSPR Trigger: TCTGGGACTCCACCTGGGACCCGGCCGTTCCCCGCATCTCAGGCGCCTGTCCCGCGCCGGTCCGCGCCTGCT 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CCA 72 bp | TACCGAAAGCCTCCGCAGGAGCATCGGGGAGCCCCGTaGGCTCGGCTCCTCCGAGCGCTGCCGGCGCAGGCC | + |
|
Preference number: 6 (lower is better) Translates to: YRKPPQEHRGAP*ARLLRALPAQA Trigger: GGCCTGCGCCGGCAGCGCTCGGAGGAGCCGAGCCCACGGGGCTCCCCGATGCTCCTGCGGAGGCTTTCGGTA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS GCA 72 bp | CGGCTCAGCAGCTCGGAGTTGCGCACCTGCCCGCCGTaGTCCCGCAGGAAGCCCAACACCGCCGCCTGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: RLSSSELRTCPP*SRRKPNTAAWL Trigger: GAGCCAGGCGGCGGTGTTGGGCTTCCTGCGGGAGCACGGCGGGCAGGTGCGCAACTCCGAGCTGCTGAGCCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS GCA 72 bp | CTCCAACGACCGCTGGCCGTGCGCACCAGCCACTCGTaGTCCGTGGGCTCCAGGGGCACCGCGGGTGACGGT | + |
|
Preference number: 6 (lower is better) Translates to: LQRPLAVRTSHS*SVGSRGTAGDG Trigger: ACCGTCACCCGCGGTGCCCCTGGAGCCCACGGAGCACGAGTGGCTGGTGCGCACGGCCAGCGGTCGTTGGAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS CCA 72 bp | CTGCTTGAAGCGGTCCCTACGGGCCGCGCGGCCCCGTaGGTCCCCAGCGTCCAGCAGCGGCTTGAAGCGGCT | + |
|
Preference number: 6 (lower is better) Translates to: LLEAVPTGRAAP*VPSVQQRLEAA Trigger: AGCCGCTTCAAGCCGCTGCTGGACGCTGGGGACCCACGGGGCCGCGCGGCCCGTAGGGACCGCTTCAAGCAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS GCA 72 bp | CGCACCGGCAGCATGCAAGGCTTCTGCGGTGGCACTTaGGCCGTGGGAGGTGCAGGCTCCGGGCCTGGCGAC | + |
|
Preference number: 6 (lower is better) Translates to: RTGSMQGFCGGT*AVGGAGSGPGD Trigger: GTCGCCAGGCCCGGAGCCTGCACCTCCCACGGCGCAAGTGCCACCGCAGAAGCCTTGCATGCTGCCGGTGCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS GCA 72 bp | CCGCGGGGCCAGGAACGACGCAGCGCACCGGCAGCATaGAAGGCTTCTGCGGTGGCACTTGCGCCGTGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: PRGQERRSAPAA*KASAVALAPWE Trigger: CTCCCACGGCGCAAGTGCCACCGCAGAAGCCTTGCATGCTGCCGGTGCGCTGCGTCGTTCCTGGCCCCGCGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CCA 72 bp | GACGCAGCGCACCGGCAGCATGCAAGGCTTCTGCGGTaGCACTTGCGCCGTGGGAGGTGCAGGCTCCGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: DAAHRQHARLLR*HLRRGRCRLRA Trigger: GGCCCGGAGCCTGCACCTCCCACGGCGCAAGTGCCACCGCAGAAGCCTTGCATGCTGCCGGTGCGCTGCGTC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CAA 72 bp | GCGCACCGGCAGCATGCAAGGCTTCTGCGGTGGCACTaGCGCCGTGGGAGGTGCAGGCTCCGGGCCTGGCGA | + |
|
Preference number: 6 (lower is better) Translates to: AHRQHARLLRWH*RRGRCRLRAWR Trigger: TCGCCAGGCCCGGAGCCTGCACCTCCCACGGCGCAAGTGCCACCGCAGAAGCCTTGCATGCTGCCGGTGCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS TCA 72 bp | AGGCCGCGGTCCCGCAAGAGCAACCCGTGCAGCTGGTaGCTCCAACGACCGCTGGCCGTGCGCACCAGCCAC | + |
|
Preference number: 6 (lower is better) Translates to: RPRSRKSNPCSW*LQRPLAVRTSH Trigger: GTGGCTGGTGCGCACGGCCAGCGGTCGTTGGAGTCACCAGCTGCACGGGTTGCTCTTGCGGGACCGCGGCCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CAA 90 bp | AACGACGCAGCGCACCGGCAGCATGCAAGGCTTCTGCGGTGGCACTaGCGCCGTGGGAGGTGCAGGCTCCGGGCCTGGCGACTCTGTGCT | + |
|
Preference number: 6 (lower is better) Translates to: NDAAHRQHARLLRWH*RRGRCRLRAWRLCA Trigger: AGCACAGAGTCGCCAGGCCCGGAGCCTGCACCTCCCACGGCGCAAGTGCCACCGCAGAAGCCTTGCATGCTGCCGGTGCGCTGCGTCGTT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CAA 90 bp | TTGGCCGCCCAGTGTAGCGCGGTGAAGCCGGACATGAAGTCGCGCTaGGCAGCCAGGCCGCGGTCCCGCAAGAGCAACCCGTGCAGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: LAAQCSAVKPDMKSR*AARPRSRKSNPCSW Trigger: CCAGCTGCACGGGTTGCTCTTGCGGGACCGCGGCCTGGCTGCCAAGCGCGACTTCATGTCCGGCTTCACCGCGCTACACTGGGCGGCCAA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS GCA 72 bp | GGAACGACGCAGCGCACCGGCAGCATGCAAGGCTTCTaGGGTGGCACTTGCGCCGTGGGAGGTGCAGGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: GTTQRTGSMQGF*GGTCAVGGAGS Trigger: GGAGCCTGCACCTCCCACGGCGCAAGTGCCACCGCAGAAGCCTTGCATGCTGCCGGTGCGCTGCGTCGTTCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CCA 72 bp | AGGCGCCTGAGATGCGGGGAACGGCCGGGTCCCAGGTaGAGTCCCAGACCCGACTCCTCTACCGAAAGCCTC | + |
|
Preference number: 6 (lower is better) Translates to: RRLRCGERPGPR*SPRPDSSTESL Trigger: GAGGCTTTCGGTAGAGGAGTCGGGTCTGGGACTCCACCTGGGACCCGGCCGTTCCCCGCATCTCAGGCGCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CCA 72 bp | AGAGCAACCCGTGCAGCTGGTGACTCCAACGACCGCTaGCCGTGCGCACCAGCCACTCGTGCTCCGTGGGCT | + |
|
Preference number: 6 (lower is better) Translates to: RATRAAGDSNDR*PCAPATRAPWA Trigger: AGCCCACGGAGCACGAGTGGCTGGTGCGCACGGCCAGCGGTCGTTGGAGTCACCAGCTGCACGGGTTGCTCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CAA 72 bp | AGCTCCTTCACCACGGCCACGTTGTTGACGAACTGCTaGAAGCGGTCCCTACGGGCCGCGCGGCCCCGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: SSFTTATLLTNC*KRSLRAARPRG Trigger: CCCACGGGGCCGCGCGGCCCGTAGGGACCGCTTCAAGCAGTTCGTCAACAACGTGGCCGTGGTGAAGGAGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CAA 72 bp | CAGTGTAGCGCGGTGAAGCCGGACATGAAGTCGCGCTaGGCAGCCAGGCCGCGGTCCCGCAAGAGCAACCCG | + |
|
Preference number: 6 (lower is better) Translates to: QCSAVKPDMKSR*AARPRSRKSNP Trigger: CGGGTTGCTCTTGCGGGACCGCGGCCTGGCTGCCAAGCGCGACTTCATGTCCGGCTTCACCGCGCTACACTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CAA 90 bp | CGCGCCACCTCCACCAGCTGTAAAGCCATCTCCCGGTCGCCGTTCTaGGCCGCCCAGTGTAGCGCGGTGAAGCCGGACATGAAGTCGCGC | + |
|
Preference number: 6 (lower is better) Translates to: RATSTSCKAISRSPF*AAQCSAVKPDMKSR Trigger: GCGCGACTTCATGTCCGGCTTCACCGCGCTACACTGGGCGGCCAAGAACGGCGACCGGGAGATGGCTTTACAGCTGGTGGAGGTGGCGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS GCA 72 bp | TCCAGCTCCTTCACCACGGCCACGTTGTTGACGAACTaGTTGAAGCGGTCCCTACGGGCCGCGCGGCCCCGT | + |
|
Preference number: 6 (lower is better) Translates to: SSSFTTATLLTN*LKRSLRAARPR Trigger: ACGGGGCCGCGCGGCCCGTAGGGACCGCTTCAAGCAGTTCGTCAACAACGTGGCCGTGGTGAAGGAGCTGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS GCA 72 bp | GCACTAGTGGTGGAGCTGAGGATGGTGGCGGCTACCTaGACGGGGTGCCGAGACACAAGGCTCCCACTGCCA | + |
|
Preference number: 6 (lower is better) Translates to: ALVVELRMVAAT*TGCRDTRLPLP Trigger: TGGCAGTGGGAGCCTTGTGTCTCGGCACCCCGTGCAGGTAGCCGCCACCATCCTCAGCTCCACCACTAGTGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CAA 90 bp | ACCACGAACTTGACCCCATCCAGCTCCTTCACCACGGCCACGTTGTaGACGAACTGCTTGAAGCGGTCCCTACGGGCCGCGCGGCCCCGT | + |
|
Preference number: 6 (lower is better) Translates to: TTNLTPSSSFTTATL*TNCLKRSLRAARPR Trigger: ACGGGGCCGCGCGGCCCGTAGGGACCGCTTCAAGCAGTTCGTCAACAACGTGGCCGTGGTGAAGGAGCTGGATGGGGTCAAGTTCGTGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CAA 90 bp | AGCACCACGAACTTGACCCCATCCAGCTCCTTCACCACGGCCACGTaGTTGACGAACTGCTTGAAGCGGTCCCTACGGGCCGCGCGGCCC | + |
|
Preference number: 6 (lower is better) Translates to: STTNLTPSSSFTTAT*LTNCLKRSLRAARP Trigger: GGGCCGCGCGGCCCGTAGGGACCGCTTCAAGCAGTTCGTCAACAACGTGGCCGTGGTGAAGGAGCTGGATGGGGTCAAGTTCGTGGTGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS TCA 72 bp | GCTGTGGCGCTGAGCCTGATGGCGCCTCAACCTGGGTaGCCTCTGAGGGTAGGGTCTCAGGGGTGTGCTGTA | + |
|
Preference number: 6 (lower is better) Translates to: AVALSLMAPQPG*PLRVGSQGCAV Trigger: TACAGCACACCCCTGAGACCCTACCCTCAGAGGTCACCCAGGTTGAGGCGCCATCAGGCTCAGCGCCACAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CAA 72 bp | TCCACCAGCTGTAAAGCCATCTCCCGGTCGCCGTTCTaGGCCGCCCAGTGTAGCGCGGTGAAGCCGGACATG | + |
|
Preference number: 6 (lower is better) Translates to: STSCKAISRSPF*AAQCSAVKPDM Trigger: CATGTCCGGCTTCACCGCGCTACACTGGGCGGCCAAGAACGGCGACCGGGAGATGGCTTTACAGCTGGTGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
||
| CDS CAA 90 bp | TCGGGTCCTTCCGGCGGCCGGGGCTTCTTTCTCAGCACCACGAACTaGACCCCATCCAGCTCCTTCACCACGGCCACGTTGTTGACGAAC | + |
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Preference number: 6 (lower is better) Translates to: SGPSGGRGFFLSTTN*TPSSSFTTATLLTN Trigger: GTTCGTCAACAACGTGGCCGTGGTGAAGGAGCTGGATGGGGTCAAGTTCGTGGTGCTGAGAAAGAAGCCCCGGCCGCCGGAAGGACCCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS TCA 72 bp | TTCGGGGAGCCATGGGCGAGGCACCCAAGAACTTGCTaGAGGAACTTGACTTCTTCAAGCCACGAGCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: FGEPWARHPRTC*RNLTSSSHEPG Trigger: ACCTGGCTCGTGGCTTGAAGAAGTCAAGTTCCTTCAGCAAGTTCTTGGGTGCCTCGCCCATGGCTCCCCGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS TCA 72 bp | GGCACTAAACCAGCTAAAGGTCCTGGAGTGGATCGATaGGAGATTTCGGTGAAGGACGGCAGGCCACCGCGA | + |
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Preference number: 6 (lower is better) Translates to: GTKPAKGPGVDR*EISVKDGRPPR Trigger: TCGCGGTGGCCTGCCGTCCTTCACCGAAATCTCTCATCGATCCACTCCAGGACCTTTAGCTGGTTTAGTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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| CDS TCA 72 bp | CATGGGCGAGGCACCCAAGAACTTGCTGAAGGAACTTaGCTTCTTCAAGCCACGAGCCAGGTCCTGGAGCAT | + |
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Preference number: 6 (lower is better) Translates to: HGRGTQELAEGT*LLQATSQVLEH Trigger: ATGCTCCAGGACCTGGCTCGTGGCTTGAAGAAGTCAAGTTCCTTCAGCAAGTTCTTGGGTGCCTCGCCCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104955.4 |
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