RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SOST (Mus musculus)

Ensembl gene IDs: ENSMUSG00000001494

Ensembl transcript IDs: ENSMUST00000001534.7

Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTCTGGAAAGTTTGGCACCCCTGGCCTGGGCTGCAGGCTTTACACTaGAAACGAATCGGATCGCGCGGGGGCTGCATAGGCGCGGGCTCG +
Preference number: 1 (lower is better)
Translates to: VWKVWHPWPGLQALH*KRIGSRGGCIGAGS
Trigger: CGAGCCCGCGCCTATGCAGCCCCCGCGCGATCCGATTCGTTTTCAGTGTAAAGCCTGCAGCCCAGGCCAGGGGTGCCAAACTTTCCAGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR CCA 90 bp CTAGACAGAAATGTGTCCGTGGGTGGCAGGCAGGAGGTGGTGTCCTaGCAAGGGACAAGGATGGGAGGTGACTGGCAAGCCCAGTTTCCT +
Preference number: 1 (lower is better)
Translates to: LDRNVSVGGRQEVVS*QGTRMGGDWQAQFP
Trigger: AGGAAACTGGGCTTGCCAGTCACCTCCCATCCTTGTCCCTTGCCAGGACACCACCTCCTGCCTGCCACCCACGGACACATTTCTGTCTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR CCA 90 bp ACAGCACGACGACGCTCTGTTTCTAGACAGAAATGTGTCCGTGGGTaGCAGGCAGGAGGTGGTGTCCTGGCAAGGGACAAGGATGGGAGG +
Preference number: 1 (lower is better)
Translates to: TARRRSVSRQKCVRG*QAGGGVLARDKDGR
Trigger: CCTCCCATCCTTGTCCCTTGCCAGGACACCACCTCCTGCCTGCCACCCACGGACACATTTCTGTCTAGAAACAGAGCGTCGTCGTGCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR TCA 90 bp TTTGAAGGCAGATTTGAGAGGAAGGAGTGGGGGAAGCCAAACCTCTaGGGCGGCGAGGCTGGGAGCCAACAAACAGCTTCTTCTAGGCGG +
Preference number: 1 (lower is better)
Translates to: FEGRFERKEWGKPNL*GGEAGSQQTASSRR
Trigger: CCGCCTAGAAGAAGCTGTTTGTTGGCTCCCAGCCTCGCCGCCTCAGAGGTTTGGCTTCCCCCACTCCTTCCTCTCAAATCTGCCTTCAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR TCA 90 bp TGGCAGGCAGGAGGTGGTGTCCTGGCAAGGGACAAGGATGGGAGGTaGCTGGCAAGCCCAGTTTCCTCCAACGACCTTAAACTGTTGTGT +
Preference number: 1 (lower is better)
Translates to: WQAGGGVLARDKDGR*LASPVSSNDLKLLC
Trigger: ACACAACAGTTTAAGGTCGTTGGAGGAAACTGGGCTTGCCAGTCACCTCCCATCCTTGTCCCTTGCCAGGACACCACCTCCTGCCTGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR GCA 90 bp CCAGGTCTTTCGTTCCACACTCCCTTCCCTTTAAGGTGGAAACACTaGCTTGTCCTGTATAGGTCCGGCGAGGGTAGAAAGACCCCCATC +
Preference number: 1 (lower is better)
Translates to: PGLSFHTPFPLRWKH*LVLYRSGEGRKTPI
Trigger: GATGGGGGTCTTTCTACCCTCGCCGGACCTATACAGGACAAGGCAGTGTTTCCACCTTAAAGGGAAGGGAGTGTGGAACGAAAGACCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR CCA 90 bp AGGCAGGAGGTGGTGTCCTGGCAAGGGACAAGGATGGGAGGTGACTaGCAAGCCCAGTTTCCTCCAACGACCTTAAACTGTTGTGTAGAA +
Preference number: 1 (lower is better)
Translates to: RQEVVSWQGTRMGGD*QAQFPPTTLNCCVE
Trigger: TTCTACACAACAGTTTAAGGTCGTTGGAGGAAACTGGGCTTGCCAGTCACCTCCCATCCTTGTCCCTTGCCAGGACACCACCTCCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR CCA 90 bp AAGACCGTACCAAAAGAGAACCACGTAGCCCAACATCACACTCAGTaGCCAGGTCAGGGTCAGAAACCCTATCTAGCCCACGCAGGCTTT +
Preference number: 1 (lower is better)
Translates to: KTVPKENHVAQHHTQ*PGQGQKPYLAHAGF
Trigger: AAAGCCTGCGTGGGCTAGATAGGGTTTCTGACCCTGACCTGGCCACTGAGTGTGATGTTGGGCTACGTGGTTCTCTTTTGGTACGGTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR TCA 90 bp TCTGGAAATGATTTACAAAAAGATTGTGGGTGGTGCTGTGGCGCCTaGCAGCTTCTCAGCATATGTATAACACTTGCGCCCTCCGCCCCC +
Preference number: 1 (lower is better)
Translates to: SGNDLQKDCGWCCGA*QLLSICITLAPSAP
Trigger: GGGGGCGGAGGGCGCAAGTGTTATACATATGCTGAGAAGCTGTCAGGCGCCACAGCACCACCCACAATCTTTTTGTAAATCATTTCCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR-3UTR GCA 90 bp CCACCCGGGGCTAGGCAGAGTCTGGGACTCAAGCTTCCTCTCCTGGCCCGCGGGACCCCTGGCCTGGGCTaGAGGCTTTACACTGAAAAC +
Preference number: 2 (lower is better)
Translates to: PPGARQSLGLKLPLLARGTPGLG*RLYTEN
Trigger: GTTTTCAGTGTAAAGCCTGCAGCCCAGGCCAGGGGT...CCCGCGGGCCAGGAGAGGAAGCTTGAGTCCCAGACTCTGCCTAGCCCCGGGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR-3UTR CCA 90 bp CCACCCGGGGCTAGGCAGAGTCTGGGACTCAAGCTTCCTCTCCTGGCCCGCGGGAAAGTTTGGCACCCCTaGCCTGGGCTGCAGGCTTTA +
Preference number: 2 (lower is better)
Translates to: PPGARQSLGLKLPLLARGKVWHP*PGLQAL
Trigger: TAAAGCCTGCAGCCCAGGCCAGGGGTGCCAAACTTT...CCCGCGGGCCAGGAGAGGAAGCTTGAGTCCCAGACTCTGCCTAGCCCCGGGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR-3UTR TCA 90 bp CCACCCGGGGCTAGGCAGAGTCTGGGACTCAAGCTTCCTCTCCTGGCCCGCGGGCTGCAGGCTTTACACTaGAAACGAATCGGATCGCGC +
Preference number: 2 (lower is better)
Translates to: PPGARQSLGLKLPLLARGLQALH*KRIGSR
Trigger: GCGCGATCCGATTCGTTTTCAGTGTAAAGCCTGCAG...CCCGCGGGCCAGGAGAGGAAGCTTGAGTCCCAGACTCTGCCTAGCCCCGGGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR CAA 90 bp CGGACCCTGGCCTTCCCTATCCCAGATATGGATTTGAAGGCAGATTaGAGAGGAAGGAGTGGGGGAAGCCAAACCTCTGAGGCGGCGAGG +
Preference number: 2 (lower is better)
Translates to: RTLAFPIPDMDLKAD*RGRSGGSQTSEAAR
Trigger: CCTCGCCGCCTCAGAGGTTTGGCTTCCCCCACTCCTTCCTCTCAAATCTGCCTTCAAATCCATATCTGGGATAGGGAAGGCCAGGGTCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR-3UTR CCA 90 bp CACACTCCCTTCCCTTTAAGGTGGAAACACTGCCTTGTCCTGTATAGGTCCGGCTTGGCACCCCTGGCCTaGGCTGCAGGCTTTACACTG +
Preference number: 2 (lower is better)
Translates to: HTPFPLRWKHCLVLYRSGLAPLA*AAGFTL
Trigger: CAGTGTAAAGCCTGCAGCCCAGGCCAGGGGTGCCAA...GCCGGACCTATACAGGACAAGGCAGTGTTTCCACCTTAAAGGGAAGGGAGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR-3UTR CCA 90 bp TGTCTCAGAGGACAGCACGACGACGCTCTGTTTCTAGACAGAAATGTGTCCGTGAGGATGGGAGGTGACTaGCAAGCCCAGTTTCCTCCA +
Preference number: 2 (lower is better)
Translates to: CLRGQHDDALFLDRNVSVRMGGD*QAQFPP
Trigger: TGGAGGAAACTGGGCTTGCCAGTCACCTCCCATCCT...CACGGACACATTTCTGTCTAGAAACAGAGCGTCGTCGTGCTGTCCTCTGAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR-3UTR CCA 90 bp ATTATTCTTTTTAATGTAAGATATGCTGTCTCAGAGGACAGCACGACGACGCTCCAGGAGGTGGTGTCCTaGCAAGGGACAAGGATGGGA +
Preference number: 2 (lower is better)
Translates to: IILFNVRYAVSEDSTTTLQEVVS*QGTRMG
Trigger: TCCCATCCTTGTCCCTTGCCAGGACACCACCTCCTG...GAGCGTCGTCGTGCTGTCCTCTGAGACAGCATATCTTACATTAAAAAGAATAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR-3UTR CCA 90 bp ATTATTCTTTTTAATGTAAGATATGCTGTCTCAGAGGACAGCACGACGACGCTCCAACATCACACTCAGTaGCCAGGTCAGGGTCAGAAA +
Preference number: 2 (lower is better)
Translates to: IILFNVRYAVSEDSTTTLQHHTQ*PGQGQK
Trigger: TTTCTGACCCTGACCTGGCCACTGAGTGTGATGTTG...GAGCGTCGTCGTGCTGTCCTCTGAGACAGCATATCTTACATTAAAAAGAATAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR CCA 72 bp CTGCGGTCTCTACTGGGCTGGGAACTCCACACGGTCTaGAAAGTTTGGCACCCCTGGCCTGGGCTGCAGGCT +
Preference number: 3 (lower is better)
Translates to: LRSLLGWELHTV*KVWHPWPGLQA
Trigger: AGCCTGCAGCCCAGGCCAGGGGTGCCAAACTTTCCAGACCGTGTGGAGTTCCCAGCCCAGTAGAGACCGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR TCA 72 bp GTTTGGCACCCCTGGCCTGGGCTGCAGGCTTTACACTaGAAACGAATCGGATCGCGCGGGGGCTGCATAGGC +
Preference number: 3 (lower is better)
Translates to: VWHPWPGLQALH*KRIGSRGGCIG
Trigger: GCCTATGCAGCCCCCGCGCGATCCGATTCGTTTTCAGTGTAAAGCCTGCAGCCCAGGCCAGGGGTGCCAAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR CCA 72 bp GCAGGCAGGAGGTGGTGTCCTGGCAAGGGACAAGGATaGGAGGTGACTGGCAAGCCCAGTTTCCTCCAACGA +
Preference number: 3 (lower is better)
Translates to: AGRRWCPGKGQG*EVTGKPSFLQR
Trigger: TCGTTGGAGGAAACTGGGCTTGCCAGTCACCTCCCATCCTTGTCCCTTGCCAGGACACCACCTCCTGCCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR GCA 72 bp ACACGGTCTGGAAAGTTTGGCACCCCTGGCCTGGGCTaGAGGCTTTACACTGAAAACGAATCGGATCGCGCG +
Preference number: 3 (lower is better)
Translates to: TRSGKFGTPGLG*RLYTENESDRA
Trigger: CGCGCGATCCGATTCGTTTTCAGTGTAAAGCCTGCAGCCCAGGCCAGGGGTGCCAAACTTTCCAGACCGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR CCA 72 bp CGACGCTCTGTTTCTAGACAGAAATGTGTCCGTGGGTaGCAGGCAGGAGGTGGTGTCCTGGCAAGGGACAAG +
Preference number: 3 (lower is better)
Translates to: RRSVSRQKCVRG*QAGGGVLARDK
Trigger: CTTGTCCCTTGCCAGGACACCACCTCCTGCCTGCCACCCACGGACACATTTCTGTCTAGAAACAGAGCGTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR-3UTR CAA 90 bp TGTCTCAGAGGACAGCACGACGACGCTCTGTTTCTAGACAGAAATGTGTCCGTGCACGGTCTGGAAAGTTaGGCACCCCTGGCCTGGGCT +
Preference number: 3 (lower is better)
Translates to: CLRGQHDDALFLDRNVSVHGLES*APLAWA
Trigger: AGCCCAGGCCAGGGGTGCCAAACTTTCCAGACCGTG...CACGGACACATTTCTGTCTAGAAACAGAGCGTCGTCGTGCTGTCCTCTGAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR TCA 72 bp AGATTTGAGAGGAAGGAGTGGGGGAAGCCAAACCTCTaGGGCGGCGAGGCTGGGAGCCAACAAACAGCTTCT +
Preference number: 3 (lower is better)
Translates to: RFERKEWGKPNL*GGEAGSQQTAS
Trigger: AGAAGCTGTTTGTTGGCTCCCAGCCTCGCCGCCTCAGAGGTTTGGCTTCCCCCACTCCTTCCTCTCAAATCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR CCA 72 bp GTGGTGTCCTGGCAAGGGACAAGGATGGGAGGTGACTaGCAAGCCCAGTTTCCTCCAACGACCTTAAACTGT +
Preference number: 3 (lower is better)
Translates to: VVSWQGTRMGGD*QAQFPPTTLNC
Trigger: ACAGTTTAAGGTCGTTGGAGGAAACTGGGCTTGCCAGTCACCTCCCATCCTTGTCCCTTGCCAGGACACCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR CCA 72 bp CCAGGTCTTTCGTTCCACACTCCCTTCCCTTTAAGGTaGAAACACTGCCTTGTCCTGTATAGGTCCGGCGAG +
Preference number: 3 (lower is better)
Translates to: PGLSFHTPFPLR*KHCLVLYRSGE
Trigger: CTCGCCGGACCTATACAGGACAAGGCAGTGTTTCCACCTTAAAGGGAAGGGAGTGTGGAACGAAAGACCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR-3UTR CAA 90 bp TGTCTCAGAGGACAGCACGACGACGCTCTGTTTCTAGACAGAAATGTGTCCGTGAATATGACAAGGCAGTaGGGGGCGGGACACTGCTCT +
Preference number: 3 (lower is better)
Translates to: CLRGQHDDALFLDRNVSVNMTRQ*GAGHCS
Trigger: AGAGCAGTGTCCCGCCCCCAACTGCCTTGTCATATT...CACGGACACATTTCTGTCTAGAAACAGAGCGTCGTCGTGCTGTCCTCTGAGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR GCA 72 bp TCGTTCCACACTCCCTTCCCTTTAAGGTGGAAACACTaGCTTGTCCTGTATAGGTCCGGCGAGGGTAGAAAG +
Preference number: 3 (lower is better)
Translates to: SFHTPFPLRWKH*LVLYRSGEGRK
Trigger: CTTTCTACCCTCGCCGGACCTATACAGGACAAGGCAGTGTTTCCACCTTAAAGGGAAGGGAGTGTGGAACGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR TCA 72 bp GATTTACAAAAAGATTGTGGGTGGTGCTGTGGCGCCTaGCAGCTTCTCAGCATATGTATAACACTTGCGCCC +
Preference number: 3 (lower is better)
Translates to: DLQKDCGWCCGA*QLLSICITLAP
Trigger: GGGCGCAAGTGTTATACATATGCTGAGAAGCTGTCAGGCGCCACAGCACCACCCACAATCTTTTTGTAAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR TCA 72 bp ACCTTAAACTGTTGTGTAGAAAATCCCTTTACAATATaGCAAGGCAGTTGGGGGCGGGACACTGCTCTTCGG +
Preference number: 3 (lower is better)
Translates to: TLNCCVENPFTI*QGSWGRDTALR
Trigger: CCGAAGAGCAGTGTCCCGCCCCCAACTGCCTTGTCATATTGTAAAGGGATTTTCTACACAACAGTTTAAGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR-3UTR CAA 90 bp ATTATTCTTTTTAATGTAAGATATGCTGTCTCAGAGGACAGCACGACGACGCTCAACGACCTTAAACTGTaGTGTAGAAAATCCCTTTAC +
Preference number: 3 (lower is better)
Translates to: IILFNVRYAVSEDSTTTLNDLKL*CRKSLY
Trigger: GTAAAGGGATTTTCTACACAACAGTTTAAGGTCGTT...GAGCGTCGTCGTGCTGTCCTCTGAGACAGCATATCTTACATTAAAAAGAATAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CCA 90 bp CAGCGGGCAGAAGGACCTGCGGTCTCTACTGGGCTGGGAACTCCACACGGTCTGCGCGCGGGGCCGCACTaGCCGGAGCACACCAACTCG +
Preference number: 4 (lower is better)
Translates to: QRAEGPAVSTGLGTPHGLRAGPH*PEHTNS
Trigger: CGAGTTGGTGTGCTCCGGCCAGTGCGGCCCCGCGCG...CAGACCGTGTGGAGTTCCCAGCCCAGTAGAGACCGCAGGTCCTTCTGCCCGCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR GCA 90 bp CCACCCGGGGCTAGGCAGAGTCTGGGACTCAAGCTTCCTCTCCTGGCCCGCGGGGATGGTGGGGAGGTCTaGCTCCATTCTCCGCCCGGT +
Preference number: 4 (lower is better)
Translates to: PPGARQSLGLKLPLLARGDGGEV*LHSPPG
Trigger: ACCGGGCGGAGAATGGAGGCAGACCTCCCCACCATC...CCCGCGGGCCAGGAGAGGAAGCTTGAGTCCCAGACTCTGCCTAGCCCCGGGTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR TCA 90 bp CAGCGGGCAGAAGGACCTGCGGTCTCTACTGGGCTGGGAACTCCACACGGTCTGAGCACACCAACTCGGTaGCCGGCTTGGCGCTGCGGC +
Preference number: 4 (lower is better)
Translates to: QRAEGPAVSTGLGTPHGLSTPTR*PAWRCG
Trigger: GCCGCAGCGCCAAGCCGGTCACCGAGTTGGTGTGCT...CAGACCGTGTGGAGTTCCCAGCCCAGTAGAGACCGCAGGTCCTTCTGCCCGCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CCA 90 bp CAGCGGGCAGAAGGACCTGCGGTCTCTACTGGGCTGGGAACTCCACACGGTCTGAAGGCTTGCCACCCCTaGCCCTCCACAGCACAGAAG +
Preference number: 4 (lower is better)
Translates to: QRAEGPAVSTGLGTPHGLKACHP*PSTAQK
Trigger: CTTCTGTGCTGTGGAGGGCCAGGGGTGGCAAGCCTT...CAGACCGTGTGGAGTTCCCAGCCCAGTAGAGACCGCAGGTCCTTCTGCCCGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CCA 90 bp CAGCGGGCAGAAGGACCTGCGGTCTCTACTGGGCTGGGAACTCCACACGGTCTGGTACTCTCCAAGCCCTaGGATGACCTCTGTGGCATC +
Preference number: 4 (lower is better)
Translates to: QRAEGPAVSTGLGTPHGLVLSKP*DDLCGI
Trigger: GATGCCACAGAGGTCATCCCAGGGCTTGGAGAGTAC...CAGACCGTGTGGAGTTCCCAGCCCAGTAGAGACCGCAGGTCCTTCTGCCCGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CCA 90 bp GGAAAGTTTGGCACCCCTGGCCTGGGCTGCAGGCTTTACACTGAAAACGAATCGACTTCACGCGCCCGATaGCGTTGGGCAGCAGCCGCG +
Preference number: 4 (lower is better)
Translates to: GKFGTPGLGCRLYTENESTSRAR*RWAAAA
Trigger: CGCGGCTGCTGCCCAACGCCATCGGGCGCGTGAAGT...CGATTCGTTTTCAGTGTAAAGCCTGCAGCCCAGGCCAGGGGTGCCAAACTTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR TCA 90 bp CACACTCCCTTCCCTTTAAGGTGGAAACACTGCCTTGTCCTGTATAGGTCCGGCCCGGCCCGAAGTCCTTaGGCTCCGACTGGTTGTGGA +
Preference number: 4 (lower is better)
Translates to: HTPFPLRWKHCLVLYRSGPARSP*APTGCG
Trigger: TCCACAACCAGTCGGAGCTCAAGGACTTCGGGCCGG...GCCGGACCTATACAGGACAAGGCAGTGTTTCCACCTTAAAGGGAAGGGAGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CCA 90 bp GTACCAAAAGAGAACCACGTAGCCCAACATCACACTCAGTGGCCAGGTCAGGGTAGCTCCGACTGGTTGTaGAAGCGGGTGAGGCGCTTG +
Preference number: 4 (lower is better)
Translates to: VPKENHVAQHHTQWPGQGSSDWL*KRVRRL
Trigger: CAAGCGCCTCACCCGCTTCCACAACCAGTCGGAGCT...ACCCTGACCTGGCCACTGAGTGTGATGTTGGGCTACGTGGTTCTCTTTTGGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR TCA 90 bp ACCAAAAGAGAACCACGTAGCCCAACATCACACTCAGTGGCCAGGTCAGGGTCACTCCAAGCCCTGGGATaGCCTCTGTGGCATCATTCC +
Preference number: 4 (lower is better)
Translates to: TKREPRSPTSHSVARSGSLQALG*PLWHHS
Trigger: GGAATGATGCCACAGAGGTCATCCCAGGGCTTGGAG...TGACCCTGACCTGGCCACTGAGTGTGATGTTGGGCTACGTGGTTCTCTTTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR TCA 90 bp GGAGGTGACTGGCAAGCCCAGTTTCCTCCAACGACCTTAAACTGTTGTGTAGAAGGTTGTGGAAGCGGGTaGGGCGCTTGCACTTGCACG +
Preference number: 4 (lower is better)
Translates to: GGDWQAQFPPTTLNCCVEGCGSG*GACTCT
Trigger: CGTGCAAGTGCAAGCGCCTCACCCGCTTCCACAACC...TTCTACACAACAGTTTAAGGTCGTTGGAGGAAACTGGGCTTGCCAGTCACCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR TCA 90 bp GGAGGTGACTGGCAAGCCCAGTTTCCTCCAACGACCTTAAACTGTTGTGTAGAACTGTGGCATCATTCCTaGAGGCTTGCCACCCCTGGC +
Preference number: 4 (lower is better)
Translates to: GGDWQAQFPPTTLNCCVELWHHS*RLATPG
Trigger: GCCAGGGGTGGCAAGCCTTCAGGAATGATGCCACAG...TTCTACACAACAGTTTAAGGTCGTTGGAGGAAACTGGGCTTGCCAGTCACCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR GCA 90 bp TGTCTCAGAGGACAGCACGACGACGCTCTGTTTCTAGACAGAAATGTGTCCGTGGCACAGAAGGCAGCGTaGACAAGTAGGCAGATGAGG +
Preference number: 4 (lower is better)
Translates to: CLRGQHDDALFLDRNVSVAQKAA*TSRQMR
Trigger: CCTCATCTGCCTACTTGTGCACGCTGCCTTCTGTGC...CACGGACACATTTCTGTCTAGAAACAGAGCGTCGTCGTGCTGTCCTCTGAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CCA 90 bp ATTATTCTTTTTAATGTAAGATATGCTGTCTCAGAGGACAGCACGACGACGCTCTCCTTGAGCTCCGACTaGTTGTGGAAGCGGGTGAGG +
Preference number: 4 (lower is better)
Translates to: IILFNVRYAVSEDSTTTLSLSSD*LWKRVR
Trigger: CCTCACCCGCTTCCACAACCAGTCGGAGCTCAAGGA...GAGCGTCGTCGTGCTGTCCTCTGAGACAGCATATCTTACATTAAAAAGAATAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CCA 90 bp ATTATTCTTTTTAATGTAAGATATGCTGTCTCAGAGGACAGCACGACGACGCTCTCTCCGCCCGGTTCATaGTCTGGTTGTTCTCAGGAG +
Preference number: 4 (lower is better)
Translates to: IILFNVRYAVSEDSTTTLSPPGS*SGCSQE
Trigger: CTCCTGAGAACAACCAGACCATGAACCGGGCGGAGA...GAGCGTCGTCGTGCTGTCCTCTGAGACAGCATATCTTACATTAAAAAGAATAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
3UTR CAA 72 bp CTGGCAAGCCCAGTTTCCTCCAACGACCTTAAACTGTaGTGTAGAAAATCCCTTTACAATATGACAAGGCAG +
Preference number: 4 (lower is better)
Translates to: LASPVSSNDLKL*CRKSLYNMTRQ
Trigger: CTGCCTTGTCATATTGTAAAGGGATTTTCTACACAACAGTTTAAGGTCGTTGGAGGAAACTGGGCTTGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS TCA 90 bp GCAGCAGCCGCGCGGGGCCGCACTGGCCGGAGCACACCAACTCGGTaGCCGGCTTGGCGCTGCGGCATGGGCCGTCTGTCAGGAAGCGGG +
Preference number: 5 (lower is better)
Translates to: AAAARGRTGRSTPTR*PAWRCGMGRLSGSG
Trigger: CCCGCTTCCTGACAGACGGCCCATGCCGCAGCGCCAAGCCGGTCACCGAGTTGGTGTGCTCCGGCCAGTGCGGCCCCGCGCGGCTGCTGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CCA 90 bp TTCACGCGCCCGATGGCGTTGGGCAGCAGCCGCGCGGGGCCGCACTaGCCGGAGCACACCAACTCGGTGACCGGCTTGGCGCTGCGGCAT +
Preference number: 5 (lower is better)
Translates to: FTRPMALGSSRAGPH*PEHTNSVTGLALRH
Trigger: ATGCCGCAGCGCCAAGCCGGTCACCGAGTTGGTGTGCTCCGGCCAGTGCGGCCCCGCGCGGCTGCTGCCCAACGCCATCGGGCGCGTGAA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CCA 90 bp AGCGGAAATCCGGTCCGTTCGGGCGCCACCACTTCACGCGCCCGATaGCGTTGGGCAGCAGCCGCGCGGGGCCGCACTGGCCGGAGCACA +
Preference number: 5 (lower is better)
Translates to: SGNPVRSGATTSRAR*RWAAAARGRTGRST
Trigger: TGTGCTCCGGCCAGTGCGGCCCCGCGCGGCTGCTGCCCAACGCCATCGGGCGCGTGAAGTGGTGGCGCCCGAACGGACCGGATTTCCGCT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS GCA 90 bp CGGGGCACAGCAGCTGCACCCGCTGCGCGCGGTAGCGATCCGGGATaGAGCGGAAATCCGGTCCGTTCGGGCGCCACCACTTCACGCGCC +
Preference number: 5 (lower is better)
Translates to: RGTAAAPAARGSDPG*SGNPVRSGATTSRA
Trigger: GGCGCGTGAAGTGGTGGCGCCCGAACGGACCGGATTTCCGCTGCATCCCGGATCGCTACCGCGCGCAGCGGGTGCAGCTGCTGTGCCCCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CCA 90 bp AATCCGGTCCGTTCGGGCGCCACCACTTCACGCGCCCGATGGCGTTaGGCAGCAGCCGCGCGGGGCCGCACTGGCCGGAGCACACCAACT +
Preference number: 5 (lower is better)
Translates to: NPVRSGATTSRARWR*AAAARGRTGRSTPT
Trigger: AGTTGGTGTGCTCCGGCCAGTGCGGCCCCGCGCGGCTGCTGCCCAACGCCATCGGGCGCGTGAAGTGGTGGCGCCCGAACGGACCGGATT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CCA 90 bp CTGGCCGGAGCACACCAACTCGGTGACCGGCTTGGCGCTGCGGCATaGGCCGTCTGTCAGGAAGCGGGTGTAGTGCAGCTCGCGGCAGCT +
Preference number: 5 (lower is better)
Translates to: LAGAHQLGDRLGAAA*AVCQEAGVVQLAAA
Trigger: AGCTGCCGCGAGCTGCACTACACCCGCTTCCTGACAGACGGCCCATGCCGCAGCGCCAAGCCGGTCACCGAGTTGGTGTGCTCCGGCCAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CCA 90 bp GGCCGCGCGGTCTCCGGCCCGAAGTCCTTGAGCTCCGACTGGTTGTaGAAGCGGGTGAGGCGCTTGCACTTGCACGAGGCCACCAGACGC +
Preference number: 5 (lower is better)
Translates to: GRAVSGPKSLSSDWL*KRVRRLHLHEATRR
Trigger: GCGTCTGGTGGCCTCGTGCAAGTGCAAGCGCCTCACCCGCTTCCACAACCAGTCGGAGCTCAAGGACTTCGGGCCGGAGACCGCGCGGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CCA 90 bp TTCTGCGGCCGCGCGGTCTCCGGCCCGAAGTCCTTGAGCTCCGACTaGTTGTGGAAGCGGGTGAGGCGCTTGCACTTGCACGAGGCCACC +
Preference number: 5 (lower is better)
Translates to: FCGRAVSGPKSLSSD*LWKRVRRLHLHEAT
Trigger: GGTGGCCTCGTGCAAGTGCAAGCGCCTCACCCGCTTCCACAACCAGTCGGAGCTCAAGGACTTCGGGCCGGAGACCGCGCGGCCGCAGAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CAA 90 bp CCACCCGGGGCTAGGCAGAGTCTGGGACTCAAGCTTCCTCTCCTGGCCCGCGGGTTGAGCTCCGACTGGTaGTGGAAGCGGGTGAGGCGC +
Preference number: 5 (lower is better)
Translates to: PPGARQSLGLKLPLLARGLSSDW*WKRVRR
Trigger: GCGCCTCACCCGCTTCCACAACCAGTCGGAGCTCAA...CCCGCGGGCCAGGAGAGGAAGCTTGAGTCCCAGACTCTGCCTAGCCCCGGGTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CAA 90 bp CAGCGGGCAGAAGGACCTGCGGTCTCTACTGGGCTGGGAACTCCACACGGTCTGTCCGGCCCGAAGTCCTaGAGCTCCGACTGGTTGTGG +
Preference number: 5 (lower is better)
Translates to: QRAEGPAVSTGLGTPHGLSGPKS*SSDWLW
Trigger: CCACAACCAGTCGGAGCTCAAGGACTTCGGGCCGGA...CAGACCGTGTGGAGTTCCCAGCCCAGTAGAGACCGCAGGTCCTTCTGCCCGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CAA 90 bp GTACCAAAAGAGAACCACGTAGCCCAACATCACACTCAGTGGCCAGGTCAGGGTTCCGCCTGGTTGGCTTaGGCTCCCCGGGCGCCGGGC +
Preference number: 5 (lower is better)
Translates to: VPKENHVAQHHTQWPGQGSAWLA*APRAPG
Trigger: GCCCGGCGCCCGGGGAGCCAAAGCCAACCAGGCGGA...ACCCTGACCTGGCCACTGAGTGTGATGTTGGGCTACGTGGTTCTCTTTTGGTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CAA 90 bp GGAAAGTTTGGCACCCCTGGCCTGGGCTGCAGGCTTTACACTGAAAACGAATCGAACTCGGTGACCGGCTaGGCGCTGCGGCATGGGCCG +
Preference number: 5 (lower is better)
Translates to: GKFGTPGLGCRLYTENESNSVTG*ALRHGP
Trigger: CGGCCCATGCCGCAGCGCCAAGCCGGTCACCGAGTT...CGATTCGTTTTCAGTGTAAAGCCTGCAGCCCAGGCCAGGGGTGCCAAACTTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CAA 90 bp ACCAAAAGAGAACCACGTAGCCCAACATCACACTCAGTGGCCAGGTCAGGGTCAGTGAGGCGCTTGCACTaGCACGAGGCCACCAGACGC +
Preference number: 5 (lower is better)
Translates to: TKREPRSPTSHSVARSGSVRRLH*HEATRR
Trigger: GCGTCTGGTGGCCTCGTGCAAGTGCAAGCGCCTCAC...TGACCCTGACCTGGCCACTGAGTGTGATGTTGGGCTACGTGGTTCTCTTTTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CAA 90 bp CACACTCCCTTCCCTTTAAGGTGGAAACACTGCCTTGTCCTGTATAGGTCCGGCAAGCGGGTGAGGCGCTaGCACTTGCACGAGGCCACC +
Preference number: 5 (lower is better)
Translates to: HTPFPLRWKHCLVLYRSGKRVRR*HLHEAT
Trigger: GGTGGCCTCGTGCAAGTGCAAGCGCCTCACCCGCTT...GCCGGACCTATACAGGACAAGGCAGTGTTTCCACCTTAAAGGGAAGGGAGTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS GCA 90 bp TGTACTCGGACACATCTTTGGCGTCATAGGGATGGTGGGGAGGTCTaGCTCCATTCTCCGCCCGGTTCATGGTCTGGTTGTTCTCAGGAG +
Preference number: 5 (lower is better)
Translates to: CTRTHLWRHRDGGEV*LHSPPGSWSGCSQE
Trigger: CTCCTGAGAACAACCAGACCATGAACCGGGCGGAGAATGGAGGCAGACCTCCCCACCATCCCTATGACGCCAAAGATGTGTCCGAGTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS-3UTR CAA 90 bp GGAGGTGACTGGCAAGCCCAGTTTCCTCCAACGACCTTAAACTGTTGTGTAGAACGGTTCATGGTCTGGTaGTTCTCAGGAGGAGGCTCG +
Preference number: 5 (lower is better)
Translates to: GGDWQAQFPPTTLNCCVERFMVW*FSGGGS
Trigger: CGAGCCTCCTCCTGAGAACAACCAGACCATGAACCG...TTCTACACAACAGTTTAAGGTCGTTGGAGGAAACTGGGCTTGCCAGTCACCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS GCA 72 bp GCTCCCCGGGCGCCGGGCCGCGGCTTGCGACCCTTCTaGGGCCGCGCGGTCTCCGGCCCGAAGTCCTTGAGC +
Preference number: 6 (lower is better)
Translates to: APRAPGRGLRPF*GRAVSGPKSLS
Trigger: GCTCAAGGACTTCGGGCCGGAGACCGCGCGGCCGCAGAAGGGTCGCAAGCCGCGGCCCGGCGCCCGGGGAGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CCA 72 bp CCGGTCCGTTCGGGCGCCACCACTTCACGCGCCCGATaGCGTTGGGCAGCAGCCGCGCGGGGCCGCACTGGC +
Preference number: 6 (lower is better)
Translates to: PVRSGATTSRAR*RWAAAARGRTG
Trigger: GCCAGTGCGGCCCCGCGCGGCTGCTGCCCAACGCCATCGGGCGCGTGAAGTGGTGGCGCCCGAACGGACCGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS GCA 72 bp GGCGCTTGCACTTGCACGAGGCCACCAGACGCACCTTaGGCGAGCGCGGCGCCGCGCCCCCGGGGCACAGCA +
Preference number: 6 (lower is better)
Translates to: GACTCTRPPDAP*ASAAPRPRGTA
Trigger: TGCTGTGCCCCGGGGGCGCGGCGCCGCGCTCGCGCAAGGTGCGTCTGGTGGCCTCGTGCAAGTGCAAGCGCC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 72 bp AGGCGCTTGCACTTGCACGAGGCCACCAGACGCACCTaGCGCGAGCGCGGCGCCGCGCCCCCGGGGCACAGC +
Preference number: 6 (lower is better)
Translates to: RRLHLHEATRRT*RERGAAPPGHS
Trigger: GCTGTGCCCCGGGGGCGCGGCGCCGCGCTCGCGCAAGGTGCGTCTGGTGGCCTCGTGCAAGTGCAAGCGCCT
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CCA 72 bp CCGATGGCGTTGGGCAGCAGCCGCGCGGGGCCGCACTaGCCGGAGCACACCAACTCGGTGACCGGCTTGGCG +
Preference number: 6 (lower is better)
Translates to: PMALGSSRAGPH*PEHTNSVTGLA
Trigger: CGCCAAGCCGGTCACCGAGTTGGTGTGCTCCGGCCAGTGCGGCCCCGCGCGGCTGCTGCCCAACGCCATCGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS TCA 72 bp GCGCGGGGCCGCACTGGCCGGAGCACACCAACTCGGTaGCCGGCTTGGCGCTGCGGCATGGGCCGTCTGTCA +
Preference number: 6 (lower is better)
Translates to: ARGRTGRSTPTR*PAWRCGMGRLS
Trigger: TGACAGACGGCCCATGCCGCAGCGCCAAGCCGGTCACCGAGTTGGTGTGCTCCGGCCAGTGCGGCCCCGCGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 90 bp AAATCCGGTCCGTTCGGGCGCCACCACTTCACGCGCCCGATGGCGTaGGGCAGCAGCCGCGCGGGGCCGCACTGGCCGGAGCACACCAAC +
Preference number: 6 (lower is better)
Translates to: KSGPFGRHHFTRPMA*GSSRAGPHWPEHTN
Trigger: GTTGGTGTGCTCCGGCCAGTGCGGCCCCGCGCGGCTGCTGCCCAACGCCATCGGGCGCGTGAAGTGGTGGCGCCCGAACGGACCGGATTT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS GCA 72 bp GCAGCTGCACCCGCTGCGCGCGGTAGCGATCCGGGATaGAGCGGAAATCCGGTCCGTTCGGGCGCCACCACT +
Preference number: 6 (lower is better)
Translates to: AAAPAARGSDPG*SGNPVRSGATT
Trigger: AGTGGTGGCGCCCGAACGGACCGGATTTCCGCTGCATCCCGGATCGCTACCGCGCGCAGCGGGTGCAGCTGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 72 bp CCGCACTGGCCGGAGCACACCAACTCGGTGACCGGCTaGGCGCTGCGGCATGGGCCGTCTGTCAGGAAGCGG +
Preference number: 6 (lower is better)
Translates to: PHWPEHTNSVTG*ALRHGPSVRKR
Trigger: CCGCTTCCTGACAGACGGCCCATGCCGCAGCGCCAAGCCGGTCACCGAGTTGGTGTGCTCCGGCCAGTGCGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 72 bp CCCTTCTGCGGCCGCGCGGTCTCCGGCCCGAAGTCCTaGAGCTCCGACTGGTTGTGGAAGCGGGTGAGGCGC +
Preference number: 6 (lower is better)
Translates to: PFCGRAVSGPKS*SSDWLWKRVRR
Trigger: GCGCCTCACCCGCTTCCACAACCAGTCGGAGCTCAAGGACTTCGGGCCGGAGACCGCGCGGCCGCAGAAGGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 90 bp TCCTTGAGCTCCGACTGGTTGTGGAAGCGGGTGAGGCGCTTGCACTaGCACGAGGCCACCAGACGCACCTTGCGCGAGCGCGGCGCCGCG +
Preference number: 6 (lower is better)
Translates to: SLSSDWLWKRVRRLH*HEATRRTLRERGAA
Trigger: CGCGGCGCCGCGCTCGCGCAAGGTGCGTCTGGTGGCCTCGTGCAAGTGCAAGCGCCTCACCCGCTTCCACAACCAGTCGGAGCTCAAGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 90 bp TGCGGCCGCGCGGTCTCCGGCCCGAAGTCCTTGAGCTCCGACTGGTaGTGGAAGCGGGTGAGGCGCTTGCACTTGCACGAGGCCACCAGA +
Preference number: 6 (lower is better)
Translates to: CGRAVSGPKSLSSDW*WKRVRRLHLHEATR
Trigger: TCTGGTGGCCTCGTGCAAGTGCAAGCGCCTCACCCGCTTCCACAACCAGTCGGAGCTCAAGGACTTCGGGCCGGAGACCGCGCGGCCGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 90 bp GGCTTGCGACCCTTCTGCGGCCGCGCGGTCTCCGGCCCGAAGTCCTaGAGCTCCGACTGGTTGTGGAAGCGGGTGAGGCGCTTGCACTTG +
Preference number: 6 (lower is better)
Translates to: GLRPFCGRAVSGPKS*SSDWLWKRVRRLHL
Trigger: CAAGTGCAAGCGCCTCACCCGCTTCCACAACCAGTCGGAGCTCAAGGACTTCGGGCCGGAGACCGCGCGGCCGCAGAAGGGTCGCAAGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 90 bp CCGAAGTCCTTGAGCTCCGACTGGTTGTGGAAGCGGGTGAGGCGCTaGCACTTGCACGAGGCCACCAGACGCACCTTGCGCGAGCGCGGC +
Preference number: 6 (lower is better)
Translates to: PKSLSSDWLWKRVRR*HLHEATRRTLRERG
Trigger: GCCGCGCTCGCGCAAGGTGCGTCTGGTGGCCTCGTGCAAGTGCAAGCGCCTCACCCGCTTCCACAACCAGTCGGAGCTCAAGGACTTCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CCA 72 bp GCACACCAACTCGGTGACCGGCTTGGCGCTGCGGCATaGGCCGTCTGTCAGGAAGCGGGTGTAGTGCAGCTC +
Preference number: 6 (lower is better)
Translates to: AHQLGDRLGAAA*AVCQEAGVVQL
Trigger: GAGCTGCACTACACCCGCTTCCTGACAGACGGCCCATGCCGCAGCGCCAAGCCGGTCACCGAGTTGGTGTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CCA 72 bp CGCGCGGTCTCCGGCCCGAAGTCCTTGAGCTCCGACTaGTTGTGGAAGCGGGTGAGGCGCTTGCACTTGCAC +
Preference number: 6 (lower is better)
Translates to: RAVSGPKSLSSD*LWKRVRRLHLH
Trigger: GTGCAAGTGCAAGCGCCTCACCCGCTTCCACAACCAGTCGGAGCTCAAGGACTTCGGGCCGGAGACCGCGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 72 bp TCCGACTGGTTGTGGAAGCGGGTGAGGCGCTTGCACTaGCACGAGGCCACCAGACGCACCTTGCGCGAGCGC +
Preference number: 6 (lower is better)
Translates to: SDWLWKRVRRLH*HEATRRTLRER
Trigger: GCGCTCGCGCAAGGTGCGTCTGGTGGCCTCGTGCAAGTGCAAGCGCCTCACCCGCTTCCACAACCAGTCGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CCA 72 bp GTCTCCGGCCCGAAGTCCTTGAGCTCCGACTGGTTGTaGAAGCGGGTGAGGCGCTTGCACTTGCACGAGGCC +
Preference number: 6 (lower is better)
Translates to: VSGPKSLSSDWL*KRVRRLHLHEA
Trigger: GGCCTCGTGCAAGTGCAAGCGCCTCACCCGCTTCCACAACCAGTCGGAGCTCAAGGACTTCGGGCCGGAGAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 72 bp GCGGTCTCCGGCCCGAAGTCCTTGAGCTCCGACTGGTaGTGGAAGCGGGTGAGGCGCTTGCACTTGCACGAG +
Preference number: 6 (lower is better)
Translates to: AVSGPKSLSSDW*WKRVRRLHLHE
Trigger: CTCGTGCAAGTGCAAGCGCCTCACCCGCTTCCACAACCAGTCGGAGCTCAAGGACTTCGGGCCGGAGACCGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS GCA 72 bp TGCCACCCCTGGCCCTCCACAGCACAGAAGGCAGCGTaGACAAGTAGGCAGATGAGGCACGGGGCTAGTGAG +
Preference number: 6 (lower is better)
Translates to: CHPWPSTAQKAA*TSRQMRHGASE
Trigger: CTCACTAGCCCCGTGCCTCATCTGCCTACTTGTGCACGCTGCCTTCTGTGCTGTGGAGGGCCAGGGGTGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 72 bp TTGAGCTCCGACTGGTTGTGGAAGCGGGTGAGGCGCTaGCACTTGCACGAGGCCACCAGACGCACCTTGCGC +
Preference number: 6 (lower is better)
Translates to: LSSDWLWKRVRR*HLHEATRRTLR
Trigger: GCGCAAGGTGCGTCTGGTGGCCTCGTGCAAGTGCAAGCGCCTCACCCGCTTCCACAACCAGTCGGAGCTCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 90 bp TGGTGGGGAGGTCTGCCTCCATTCTCCGCCCGGTTCATGGTCTGGTaGTTCTCAGGAGGAGGCTCGGGGTACTCTCCAAGCCCTGGGATG +
Preference number: 6 (lower is better)
Translates to: WWGGLPPFSARFMVW*FSGGGSGYSPSPGM
Trigger: CATCCCAGGGCTTGGAGAGTACCCCGAGCCTCCTCCTGAGAACAACCAGACCATGAACCGGGCGGAGAATGGAGGCAGACCTCCCCACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 90 bp CTCTCCAAGCCCTGGGATGACCTCTGTGGCATCATTCCTGAAGGCTaGCCACCCCTGGCCCTCCACAGCACAGAAGGCAGCGTGCACAAG +
Preference number: 6 (lower is better)
Translates to: LSKPWDDLCGIIPEG*PPLALHSTEGSVHK
Trigger: CTTGTGCACGCTGCCTTCTGTGCTGTGGAGGGCCAGGGGTGGCAAGCCTTCAGGAATGATGCCACAGAGGTCATCCCAGGGCTTGGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CAA 72 bp GGTCTGCCTCCATTCTCCGCCCGGTTCATGGTCTGGTaGTTCTCAGGAGGAGGCTCGGGGTACTCTCCAAGC +
Preference number: 6 (lower is better)
Translates to: GLPPFSARFMVW*FSGGGSGYSPS
Trigger: GCTTGGAGAGTACCCCGAGCCTCCTCCTGAGAACAACCAGACCATGAACCGGGCGGAGAATGGAGGCAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CCA 72 bp ACCTCTGTGGCATCATTCCTGAAGGCTTGCCACCCCTaGCCCTCCACAGCACAGAAGGCAGCGTGCACAAGT +
Preference number: 6 (lower is better)
Translates to: TSVASFLKACHP*PSTAQKAACTS
Trigger: ACTTGTGCACGCTGCCTTCTGTGCTGTGGAGGGCCAGGGGTGGCAAGCCTTCAGGAATGATGCCACAGAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS CCA 72 bp AGTGCAGCTCGCGGCAGCTGTACTCGGACACATCTTTaGCGTCATAGGGATGGTGGGGAGGTCTGCCTCCAT +
Preference number: 6 (lower is better)
Translates to: SAARGSCTRTHL*RHRDGGEVCLH
Trigger: ATGGAGGCAGACCTCCCCACCATCCCTATGACGCCAAAGATGTGTCCGAGTACAGCTGCCGCGAGCTGCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7
CDS GCA 72 bp ACACATCTTTGGCGTCATAGGGATGGTGGGGAGGTCTaGCTCCATTCTCCGCCCGGTTCATGGTCTGGTTGT +
Preference number: 6 (lower is better)
Translates to: THLWRHRDGGEV*LHSPPGSWSGC
Trigger: ACAACCAGACCATGAACCGGGCGGAGAATGGAGGCAGACCTCCCCACCATCCCTATGACGCCAAAGATGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000001534.7