RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SOS1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024241

Ensembl transcript IDs: ENSMUST00000068714.7

Found 224 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CGACCCCAGCTGGGTGCACCGCCTAAGCTCATTGTTTTGGAAATGTaGCTGCCTCTGAAACGTCATCCTGTGTATACCCAAAGATCAACC +
Preference number: 1 (lower is better)
Translates to: RPQLGAPPKLIVLEM*LPLKRHPVYTQRST
Trigger: GGTTGATCTTTGGGTATACACAGGATGACGTTTCAGAGGCAGTCACATTTCCAAAACAATGAGCTTAGGCGGTGCACCCAGCTGGGGTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR CCA 90 bp GGAATACACAGAACCTGCACCTGTACAAGAGGCATACAGCAGAGATaGGAAGAGCATGCAAAACCACCCAGCAGCAGACAACCAGGAATA +
Preference number: 1 (lower is better)
Translates to: GIHRTCTCTRGIQQR*EEHAKPPSSRQPGI
Trigger: TATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCATGCTCTTCCCATCTCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTGTGTATTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR GCA 90 bp AAGGCACATTTGGCAGCTACTGAAGGCGGCATGCATCTGCACAGGTaGACTCTAAGCCACACACATACAACTTGCATCTTTTGTGTATCT +
Preference number: 1 (lower is better)
Translates to: KAHLAATEGGMHLHR*TLSHTHTTCIFCVS
Trigger: AGATACACAAAAGATGCAAGTTGTATGTGTGTGGCTTAGAGTGCACCTGTGCAGATGCATGCCGCCTTCAGTAGCTGCCAAATGTGCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR TCA 90 bp ATACTACATCGTGAAGTAGAGTCGTTAGTGTTTGGAGTTCTCATTTaGACTCCCCAGTGCTGGCATGTTCAGTGCATCCATTGCCAGCAA +
Preference number: 1 (lower is better)
Translates to: ILHREVESLVFGVLI*TPQCWHVQCIHCQQ
Trigger: TTGCTGGCAATGGATGCACTGAACATGCCAGCACTGGGGAGTTCAAATGAGAACTCCAAACACTAACGACTCTACTTCACGATGTAGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR TCA 90 bp GGGTTACTGAAAGGCTGCGTCATTACTGAGGACACATGCACATACTaGTGGCTGTCAAAGAATGGAATACTACACAGTTCACAGACACAG +
Preference number: 1 (lower is better)
Translates to: GLLKGCVITEDTCTY*WLSKNGILHSSQTQ
Trigger: CTGTGTCTGTGAACTGTGTAGTATTCCATTCTTTGACAGCCATCAGTATGTGCATGTGTCCTCAGTAATGACGCAGCCTTTCAGTAACCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR GCA 90 bp ACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGTaGAATCAGTTTCCACATTCTAAGCTGGAATACCATTTTATTCCA +
Preference number: 1 (lower is better)
Translates to: TPAQWPEKSLHVISR*NQFPHSKLEYHFIP
Trigger: TGGAATAAAATGGTATTCCAGCTTAGAATGTGGAAACTGATTGCACCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR GCA 90 bp TCCATCCCTTTAATGATAAAGATCACTTCACAATATGAGGACTCCTaGCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGTGCAA +
Preference number: 1 (lower is better)
Translates to: SIPLMIKITSQYEDS*PMARKVPSRDFQVQ
Trigger: TTGCACCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCTCATATTGTGAAGTGATCTTTATCATTAAAGGGATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR GCA 90 bp ACAGACACAGTGGAGAATAAGAAAACGTTTTCTCTTCAAGTTGCATaGATTTCAGTCACAGTATTTGTTAGACTCAGAAGAGCAGTACAA +
Preference number: 1 (lower is better)
Translates to: TDTVENKKTFSLQVA*ISVTVFVRLRRAVQ
Trigger: TTGTACTGCTCTTCTGAGTCTAACAAATACTGTGACTGAAATGCATGCAACTTGAAGAGAAAACGTTTTCTTATTCTCCACTGTGTCTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR CAA 90 bp CCTTCCCTTGTTGGCTCAGGCAGACTGAAAGGGGCCATCACCTTGTaGAAGGCAGCACTTGCCACAGATACTGAATGGGTTTCTAATGTT +
Preference number: 2 (lower is better)
Translates to: PSLVGSGRLKGAITL*KAALATDTEWVSNV
Trigger: AACATTAGAAACCCATTCAGTATCTGTGGCAAGTGCTGCCTTCAACAAGGTGATGGCCCCTTTCAGTCTGCCTGAGCCAACAAGGGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR CAA 90 bp TCTCCTTCCCTTGTTGGCTCAGGCAGACTGAAAGGGGCCATCACCTaGTTGAAGGCAGCACTTGCCACAGATACTGAATGGGTTTCTAAT +
Preference number: 2 (lower is better)
Translates to: SPSLVGSGRLKGAIT*LKAALATDTEWVSN
Trigger: ATTAGAAACCCATTCAGTATCTGTGGCAAGTGCTGCCTTCAACAAGGTGATGGCCCCTTTCAGTCTGCCTGAGCCAACAAGGGAAGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR TCA 90 bp TCTCCTTCCCTTGTTGGCTCAGGCAGACTGAAAGGGGCCATCACCTTGTTGAAGAAAAGTCCCTTCACGTaGTTTCCAGGTGCAATCAGT +
Preference number: 2 (lower is better)
Translates to: SPSLVGSGRLKGAITLLKKSPFT*FPGAIS
Trigger: ACTGATTGCACCTGGAAATCACGTGAAGGGACTTTT...CTTCAACAAGGTGATGGCCCCTTTCAGTCTGCCTGAGCCAACAAGGGAAGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR TCA 90 bp CATGTCAAACGACCCCAGCTGGGTGCACCGCCTAAGCTCATTGTTTTGGAAATGATGGTTGCCTTGGTTTaGAAAGGCAGAGAGGATAGG +
Preference number: 2 (lower is better)
Translates to: HVKRPQLGAPPKLIVLEMMVALV*KGREDR
Trigger: CCTATCCTCTCTGCCTTTTCAAACCAAGGCAACCAT...CATTTCCAAAACAATGAGCTTAGGCGGTGCACCCAGCTGGGGTCGTTTGACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR GCA 90 bp AAGAAATGCCCCATATCTGGGAGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGTGCTGGCATGTTCAGTaGATCCATTGCCAGCAATGG +
Preference number: 2 (lower is better)
Translates to: KKCPISGSIAKQVLLHWLCWHVQ*IHCQQW
Trigger: CCATTGCTGGCAATGGATGCACTGAACATGCCAGCA...CAGCCAGTGCAGCAAAACTTGCTTAGCTATGCTCCCAGATATGGGGCATTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CCA 90 bp CCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGTGCAATCAGTTTCCACAATCCATTGCCAGCAATaGATCTGGGGGCTAGGAAAC +
Preference number: 2 (lower is better)
Translates to: PMARKVPSRDFQVQSVSTIHCQQ*IWGLGN
Trigger: GTTTCCTAGCCCCCAGATCCATTGCTGGCAATGGAT...TGTGGAAACTGATTGCACCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR GCA 90 bp ACAAATTCTCTGGTGATTTCACCAGATATTTGTACCCCCAAGTCCCTTGCCCTACTCGTTCACATTGGGTaGCTGTGTTTCTGTGTACGG +
Preference number: 2 (lower is better)
Translates to: TNSLVISPDICTPKSLALLVHIG*LCFCVR
Trigger: CCGTACACAGAAACACAGGCACCCAATGTGAACGAG...TAGGGCAAGGGACTTGGGGGTACAAATATCTGGTGAAATCACCAGAGAATTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CCA 90 bp TCTCCTTCCCTTGTTGGCTCAGGCAGACTGAAAGGGGCCATCACCTTGTTGAAGCATTTGTTCAATGAATaGCCTAATGCACACTTTGCA +
Preference number: 2 (lower is better)
Translates to: SPSLVGSGRLKGAITLLKHLFNE*PNAHFA
Trigger: TGCAAAGTGTGCATTAGGCCATTCATTGAACAAATG...CTTCAACAAGGTGATGGCCCCTTTCAGTCTGCCTGAGCCAACAAGGGAAGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CCA 90 bp AAGAAATGCCCCATATCTGGGAGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGTGGTCTAAAAAGTCCTaGGAGATTTGGGCATGTGCA +
Preference number: 2 (lower is better)
Translates to: KKCPISGSIAKQVLLHWLWSKKS*EIWACA
Trigger: TGCACATGCCCAAATCTCCCAGGACTTTTTAGACCA...CAGCCAGTGCAGCAAAACTTGCTTAGCTATGCTCCCAGATATGGGGCATTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR TCA 90 bp TGCAAAACCACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAAATTCACTTCAGATCTaGGCTCTCCTTCCCTTGTTG +
Preference number: 2 (lower is better)
Translates to: CKTTQQQTTRNKWLPWFENSLQI*ALLPLL
Trigger: CAACAAGGGAAGGAGAGCTCAGATCTGAAGTGAATT...TTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR GCA 90 bp TCATTACTGAGGACACATGCACATACTGATGGCTGTCAAAGAATGGAATACTACGTTCAGTGCATCCATTaGCAGCAATGGATCTGGGGG +
Preference number: 2 (lower is better)
Translates to: SLLRTHAHTDGCQRMEYYVQCIH*QQWIWG
Trigger: CCCCCAGATCCATTGCTGGCAATGGATGCACTGAAC...GTAGTATTCCATTCTTTGACAGCCATCAGTATGTGCATGTGTCCTCAGTAATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR GCA 90 bp AAGAAATGCCCCATATCTGGGAGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGCACGTGATTTCCAGGTaGAATCAGTTTCCACATTCT +
Preference number: 2 (lower is better)
Translates to: KKCPISGSIAKQVLLHWLHVISR*NQFPHS
Trigger: AGAATGTGGAAACTGATTGCACCTGGAAATCACGTG...CAGCCAGTGCAGCAAAACTTGCTTAGCTATGCTCCCAGATATGGGGCATTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CCA 90 bp TCATTACTGAGGACACATGCACATACTGATGGCTGTCAAAGAATGGAATACTACTGCCAGCAATGGATCTaGGGGCTAGGAAACTATCCC +
Preference number: 2 (lower is better)
Translates to: SLLRTHAHTDGCQRMEYYCQQWI*GLGNYP
Trigger: GGGATAGTTTCCTAGCCCCCAGATCCATTGCTGGCA...GTAGTATTCCATTCTTTGACAGCCATCAGTATGTGCATGTGTCCTCAGTAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CCA 90 bp AATATGAGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGAGAGTCGTTAGTGTTTaGAGTTCTCATTTGAACTCC +
Preference number: 2 (lower is better)
Translates to: NMRTPAQWPEKSLHVISRRVVSV*SSHLNS
Trigger: GGAGTTCAAATGAGAACTCCAAACACTAACGACTCT...CCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCTCATATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CCA 90 bp GCACAGGTGCACTCTAAGCCACACACATACAACTTGCATCTTTTGTGTATCTTGGGCATACAGCAGAGATaGGAAGAGCATGCAAAACCA +
Preference number: 2 (lower is better)
Translates to: AQVHSKPHTYNLHLLCILGIQQR*EEHAKP
Trigger: TGGTTTTGCATGCTCTTCCCATCTCTGCTGTATGCC...CAAGATACACAAAAGATGCAAGTTGTATGTGTGTGGCTTAGAGTGCACCTGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR TCA 90 bp TCATTACTGAGGACACATGCACATACTGATGGCTGTCAAAGAATGGAATACTACGATCACTTCACAATATaGGGACTCCTGCCCAATGGC +
Preference number: 2 (lower is better)
Translates to: SLLRTHAHTDGCQRMEYYDHFTI*GLLPNG
Trigger: GCCATTGGGCAGGAGTCCTCATATTGTGAAGTGATC...GTAGTATTCCATTCTTTGACAGCCATCAGTATGTGCATGTGTCCTCAGTAATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR TCA 90 bp ACAAATTCTCTGGTGATTTCACCAGATATTTGTACCCCCAAGTCCCTTGCCCTAACTATTAGTAAAACATaGAAGGTGTCAGGGAGGCCC +
Preference number: 2 (lower is better)
Translates to: TNSLVISPDICTPKSLALTISKT*KVSGRP
Trigger: GGGCCTCCCTGACACCTTTCATGTTTTACTAATAGT...TAGGGCAAGGGACTTGGGGGTACAAATATCTGGTGAAATCACCAGAGAATTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR GCA 90 bp CAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAAAGGCAGAGAGGTTTTGCTGCACTGGCTaGCTTGTAATTTCGAATTCA +
Preference number: 2 (lower is better)
Translates to: QQQTTRNKWLPWFEKAERFCCTG*LVISNS
Trigger: TGAATTCGAAATTACAAGGCAGCCAGTGCAGCAAAA...CCTCTCTGCCTTTTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CCA 90 bp AGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGCCTTGTAATTTCGAATTCAGAGTTTGTGAGTGGGGGTaGGTAGGGGATGTTCTTAAA +
Preference number: 2 (lower is better)
Translates to: SIAKQVLLHWLPCNFEFRVCEWG*VGDVLK
Trigger: TTTAAGAACATCCCCTACCCACCCCCACTCACAAAC...TCTGAATTCGAAATTACAAGGCAGCCAGTGCAGCAAAACTTGCTTAGCTATGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR TCA 90 bp GCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCAAGAGGAACTCCCTTTGGAGTTCTCATTTaGACTCCCCAGTGCTGGCAT +
Preference number: 2 (lower is better)
Translates to: AVKKHFYYIGNEPPRGTPFGVLI*TPQCWH
Trigger: ATGCCAGCACTGGGGAGTTCAAATGAGAACTCCAAA...GGGAGTTCCTCTTGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR TCA 90 bp TGCAAAACCACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAATCTTATACTACATCGTaGAGTAGAGTCGTTAGTGTT +
Preference number: 2 (lower is better)
Translates to: CKTTQQQTTRNKWLPWFESYTTS*SRVVSV
Trigger: AACACTAACGACTCTACTTCACGATGTAGTATAAGA...TTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR GCA 90 bp TGCAAAACCACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAGTTTTCTCTTCAAGTTaGATGCATTTCAGTCACAGT +
Preference number: 2 (lower is better)
Translates to: CKTTQQQTTRNKWLPWFEVFSSS*MHFSHS
Trigger: ACTGTGACTGAAATGCATGCAACTTGAAGAGAAAAC...TTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CCA 90 bp ACAAATTCTCTGGTGATTTCACCAGATATTTGTACCCCCAAGTCCCTTGCCCTAGACAATGGCTCCCTGTaGGAGAAATATAATTCACTT +
Preference number: 2 (lower is better)
Translates to: TNSLVISPDICTPKSLALDNGSL*EKYNSL
Trigger: AAGTGAATTATATTTCTCCCACAGGGAGCCATTGTC...TAGGGCAAGGGACTTGGGGGTACAAATATCTGGTGAAATCACCAGAGAATTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR GCA 90 bp AGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGCCTTGTAATTTCGAATTCAGAACTGCACTACCAAGGTaGACATTTAACTCGCTAATA +
Preference number: 2 (lower is better)
Translates to: SIAKQVLLHWLPCNFEFRTALPR*TFNSLI
Trigger: TATTAGCGAGTTAAATGTGCACCTTGGTAGTGCAGT...TCTGAATTCGAAATTACAAGGCAGCCAGTGCAGCAAAACTTGCTTAGCTATGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR GCA 90 bp GCACAGGTGCACTCTAAGCCACACACATACAACTTGCATCTTTTGTGTATCTTGTCTCTTCAAGTTGCATaGATTTCAGTCACAGTATTT +
Preference number: 2 (lower is better)
Translates to: AQVHSKPHTYNLHLLCILSLQVA*ISVTVF
Trigger: AAATACTGTGACTGAAATGCATGCAACTTGAAGAGA...CAAGATACACAAAAGATGCAAGTTGTATGTGTGTGGCTTAGAGTGCACCTGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CCA 90 bp GCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCAAGAGGAACTCCCACATTAGCTGACACTTaGATTTCTGGAAGAAATGCC +
Preference number: 2 (lower is better)
Translates to: AVKKHFYYIGNEPPRGTPTLADT*ISGRNA
Trigger: GGCATTTCTTCCAGAAATCCAAGTGTCAGCTAATGT...GGGAGTTCCTCTTGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CCA 90 bp AAGATTAACACGGAATACACAGAACCTGCACCTGTACAAGAGGCATACAGCAGACTGGTTGTGTTTATTTaGTATTCTTGGTTCAACTCA +
Preference number: 2 (lower is better)
Translates to: KINTEYTEPAPVQEAYSRLVVFI*YSWFNS
Trigger: TGAGTTGAACCAAGAATACCAAATAAACACAACCAG...TCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTGTGTATTCCGTGTTAATCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CCA 90 bp AGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGCCTTGTAATTTCGAATTCAGAAGTTCACAGACACAGTaGAGAATAAGAAAACGTTTT +
Preference number: 2 (lower is better)
Translates to: SIAKQVLLHWLPCNFEFRSSQTQ*RIRKRF
Trigger: AAAACGTTTTCTTATTCTCCACTGTGTCTGTGAACT...TCTGAATTCGAAATTACAAGGCAGCCAGTGCAGCAAAACTTGCTTAGCTATGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CCA 90 bp GCTAACTTGCTTTGTAACTTTTCAGCAACTGGCTACTTAATGCACTATGTTTATAAAACTGTCAACATATaGGCTTGTTGGACATTAGAC +
Preference number: 2 (lower is better)
Translates to: ANLLCNFSATGYLMHYVYKTVNI*ACWTLD
Trigger: GTCTAATGTCCAACAAGCCCATATGTTGACAGTTTT...ATAAACATAGTGCATTAAGTAGCCAGTTGCTGAAAAGTTACAAAGCAAGTTAGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR CCA 72 bp CAGTGCTGGCATGTTCAGTGCATCCATTGCCAGCAATaGATCTGGGGGCTAGGAAACTATCCCAGCTTAGAG +
Preference number: 3 (lower is better)
Translates to: QCWHVQCIHCQQ*IWGLGNYPSLE
Trigger: CTCTAAGCTGGGATAGTTTCCTAGCCCCCAGATCCATTGCTGGCAATGGATGCACTGAACATGCCAGCACTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CAA 90 bp AGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGTGCAATTGTTCAGTGCATCCATaGCCAGCAATGGATCTGGGG +
Preference number: 3 (lower is better)
Translates to: RTPAQWPEKSLHVISRCNCSVHP*PAMDLG
Trigger: CCCCAGATCCATTGCTGGCAATGGATGCACTGAACA...ATTGCACCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CAA 90 bp GCACAGGTGCACTCTAAGCCACACACATACAACTTGCATCTTTTGTGTATCTTGGGGGCCATCACCTTGTaGAAGGCAGCACTTGCCACA +
Preference number: 3 (lower is better)
Translates to: AQVHSKPHTYNLHLLCILGAITL*KAALAT
Trigger: TGTGGCAAGTGCTGCCTTCAACAAGGTGATGGCCCC...CAAGATACACAAAAGATGCAAGTTGTATGTGTGTGGCTTAGAGTGCACCTGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR GCA 72 bp TTGGCAGCTACTGAAGGCGGCATGCATCTGCACAGGTaGACTCTAAGCCACACACATACAACTTGCATCTTT +
Preference number: 3 (lower is better)
Translates to: LAATEGGMHLHR*TLSHTHTTCIF
Trigger: AAAGATGCAAGTTGTATGTGTGTGGCTTAGAGTGCACCTGTGCAGATGCATGCCGCCTTCAGTAGCTGCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CAA 90 bp CAGAACCTGCACCTGTACAAGAGGCATACAGCAGAGATGGGAAGAGCATGCAAAAAAGTCCTGGGAGATTaGGGCATGTGCATTACAGTC +
Preference number: 3 (lower is better)
Translates to: QNLHLYKRHTAEMGRACKKVLGD*GMCITV
Trigger: GACTGTAATGCACATGCCCAAATCTCCCAGGACTTT...TTTGCATGCTCTTCCCATCTCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR TCA 72 bp CTGGGTGCACCGCCTAAGCTCATTGTTTTGGAAATGTaGCTGCCTCTGAAACGTCATCCTGTGTATACCCAA +
Preference number: 3 (lower is better)
Translates to: LGAPPKLIVLEM*LPLKRHPVYTQ
Trigger: TTGGGTATACACAGGATGACGTTTCAGAGGCAGTCACATTTCCAAAACAATGAGCTTAGGCGGTGCACCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR CCA 72 bp ATAATTCACTTCAGATCTGAGCTCTCCTTCCCTTGTTaGCTCAGGCAGACTGAAAGGGGCCATCACCTTGTT +
Preference number: 3 (lower is better)
Translates to: IIHFRSELSFPC*LRQTERGHHLV
Trigger: AACAAGGTGATGGCCCCTTTCAGTCTGCCTGAGCCAACAAGGGAAGGAGAGCTCAGATCTGAAGTGAATTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CAA 90 bp AAGATTAACACGGAATACACAGAACCTGCACCTGTACAAGAGGCATACAGCAGACAACACCACCACATTTaGTTTGTGAGTGGGGGTGGG +
Preference number: 3 (lower is better)
Translates to: KINTEYTEPAPVQEAYSRQHHHI*FVSGGG
Trigger: CCCACCCCCACTCACAAACAAAATGTGGTGGTGTTG...TCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTGTGTATTCCGTGTTAATCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CAA 90 bp TGCAAAACCACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAGGCCTAATGCACACTTaGCATCCAAGAAGGGATTTG +
Preference number: 3 (lower is better)
Translates to: CKTTQQQTTRNKWLPWFEGLMHT*HPRRDL
Trigger: CAAATCCCTTCTTGGATGCAAAGTGTGCATTAGGCC...TTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR TCA 72 bp CGTGAAGTAGAGTCGTTAGTGTTTGGAGTTCTCATTTaGACTCCCCAGTGCTGGCATGTTCAGTGCATCCAT +
Preference number: 3 (lower is better)
Translates to: REVESLVFGVLI*TPQCWHVQCIH
Trigger: ATGGATGCACTGAACATGCCAGCACTGGGGAGTTCAAATGAGAACTCCAAACACTAACGACTCTACTTCACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR CCA 72 bp GGACAGTTAGGCTGGTCTAAAAAGTCCTGGGAGATTTaGGCATGTGCATTACAGTCATACGGAGCAGCATTA +
Preference number: 3 (lower is better)
Translates to: GQLGWSKKSWEI*ACALQSYGAAL
Trigger: TAATGCTGCTCCGTATGACTGTAATGCACATGCCCAAATCTCCCAGGACTTTTTAGACCAGCCTAACTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR CCA 72 bp ACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTaGTTTGAAAAGGCAGAGAGGATAGGAAGGGTTTTC +
Preference number: 3 (lower is better)
Translates to: TQQQTTRNKWLP*FEKAERIGRVF
Trigger: GAAAACCCTTCCTATCCTCTCTGCCTTTTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CAA 90 bp AGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGCCTTGTAATTTCGAATTCAGAGTTTGGAGTTCTCATTaGAACTCCCCAGTGCTGGCA +
Preference number: 3 (lower is better)
Translates to: SIAKQVLLHWLPCNFEFRVWSSH*NSPVLA
Trigger: TGCCAGCACTGGGGAGTTCAAATGAGAACTCCAAAC...TCTGAATTCGAAATTACAAGGCAGCCAGTGCAGCAAAACTTGCTTAGCTATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CAA 90 bp GCACAGGTGCACTCTAAGCCACACACATACAACTTGCATCTTTTGTGTATCTTGACAAAAAGTACCTCTTaGGTGAAGCCTCGGTACCCA +
Preference number: 3 (lower is better)
Translates to: AQVHSKPHTYNLHLLCILTKSTS*VKPRYP
Trigger: TGGGTACCGAGGCTTCACCAAAGAGGTACTTTTTGT...CAAGATACACAAAAGATGCAAGTTGTATGTGTGTGGCTTAGAGTGCACCTGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CAA 90 bp CAGAACCTGCACCTGTACAAGAGGCATACAGCAGAGATGGGAAGAGCATGCAAAAGCATTTCTATTATATaGGTAATGAGCCACCAAGAG +
Preference number: 3 (lower is better)
Translates to: QNLHLYKRHTAEMGRACKSISII*VMSHQE
Trigger: CTCTTGGTGGCTCATTACCAATATAATAGAAATGCT...TTTGCATGCTCTTCCCATCTCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR TCA 72 bp CGCCTAAGCTCATTGTTTTGGAAATGTGACTGCCTCTaGAACGTCATCCTGTGTATACCCAAAGATCAACCT +
Preference number: 3 (lower is better)
Translates to: RLSSLFWKCDCL*NVILCIPKDQP
Trigger: AGGTTGATCTTTGGGTATACACAGGATGACGTTTCAGAGGCAGTCACATTTCCAAAACAATGAGCTTAGGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CAA 90 bp GCACAGGTGCACTCTAAGCCACACACATACAACTTGCATCTTTTGTGTATCTTGTTTGAAATCGTAGCATaGCCTTCAGCCTTAGTAGTC +
Preference number: 3 (lower is better)
Translates to: AQVHSKPHTYNLHLLCILFEIVA*PSALVV
Trigger: GACTACTAAGGCTGAAGGCAATGCTACGATTTCAAA...CAAGATACACAAAAGATGCAAGTTGTATGTGTGTGGCTTAGAGTGCACCTGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR TCA 72 bp TTAAGCCAGTATTTCCCTTCACGCCAAACTCCAACTTaGGATTATTCCGTAAGAACTAGATACCCAGGTACC +
Preference number: 3 (lower is better)
Translates to: LSQYFPSRQTPT*DYSVRTRYPGT
Trigger: GGTACCTGGGTATCTAGTTCTTACGGAATAATCTCAAGTTGGAGTTTGGCGTGAAGGGAAATACTGGCTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR TCA 72 bp ATATTGGTAATGAGCCACCAAGAGGAACTCCCTTTGTaGGCCAAGCATAAGAAAACATTAGCTGACACTTGG +
Preference number: 3 (lower is better)
Translates to: ILVMSHQEELPL*AKHKKTLADTW
Trigger: CCAAGTGTCAGCTAATGTTTTCTTATGCTTGGCTCACAAAGGGAGTTCCTCTTGGTGGCTCATTACCAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR GCA 72 bp TTAATGATAAAGATCACTTCACAATATGAGGACTCCTaGCCAATGGCCAGAAAAGTCCCTTCACGTGATTTC +
Preference number: 3 (lower is better)
Translates to: LMIKITSQYEDS*PMARKVPSRDF
Trigger: GAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCTCATATTGTGAAGTGATCTTTATCATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CAA 90 bp TCATTACTGAGGACACATGCACATACTGATGGCTGTCAAAGAATGGAATACTACTTTCAGTCACAGTATTaGTTAGACTCAGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: SLLRTHAHTDGCQRMEYYFQSQY*LDSEEQ
Trigger: CTGCTCTTCTGAGTCTAACAAATACTGTGACTGAAA...GTAGTATTCCATTCTTTGACAGCCATCAGTATGTGCATGTGTCCTCAGTAATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CAA 90 bp GTTTGCATTAAGGAAGAATTTGAAATCGTAGCATTGCCTTCAGCCTTAGTAGTCGTTTATTTGGTATTCTaGGTTCAACTCAGATCCACT +
Preference number: 3 (lower is better)
Translates to: VCIKEEFEIVALPSALVVVYLVF*VQLRST
Trigger: AGTGGATCTGAGTTGAACCAAGAATACCAAATAAAC...GACTACTAAGGCTGAAGGCAATGCTACGATTTCAAATTCTTCCTTAATGCAAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR GCA 72 bp GAACTAGATACCCAGGTACCACCACATGTGCTTTTATaGTTAGTGTTTGTATGTTTTCAACCCAAAGAAATA +
Preference number: 3 (lower is better)
Translates to: ELDTQVPPHVLL*LVFVCFQPKEI
Trigger: TATTTCTTTGGGTTGAAAACATACAAACACTAAGCATAAAAGCACATGTGGTGGTACCTGGGTATCTAGTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR-3UTR CAA 90 bp GCTAACTTGCTTTGTAACTTTTCAGCAACTGGCTACTTAATGCACTATGTTTATAGACTGTTCTGCTGGTaGTGTTTATTTGGTATTCTT +
Preference number: 3 (lower is better)
Translates to: ANLLCNFSATGYLMHYVYRLFCW*CLFGIL
Trigger: AAGAATACCAAATAAACACAACCAGCAGAACAGTCT...ATAAACATAGTGCATTAAGTAGCCAGTTGCTGAAAAGTTACAAAGCAAGTTAGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR GCA 72 bp TCTGTTCTTAGAAGACTATATACTGCACTACCAAGGTaGACATTTAACTCGCTAATAAATACAAAGTTGCCA +
Preference number: 3 (lower is better)
Translates to: SVLRRLYTALPR*TFNSLINTKLP
Trigger: TGGCAACTTTGTATTTATTAGCGAGTTAAATGTGCACCTTGGTAGTGCAGTATATAGTCTTCTAAGAACAGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp TCTCCTTCCCTTGTTGGCTCAGGCAGACTGAAAGGGGCCATCACCTTGTTGAAGGCGCGTTCTCCTCGCTaGAAAACTCGTAAGGCAGCT +
Preference number: 4 (lower is better)
Translates to: SPSLVGSGRLKGAITLLKARSPR*KTRKAA
Trigger: AGCTGCCTTACGAGTTTTTCAGCGAGGAGAACGCGC...CTTCAACAAGGTGATGGCCCCTTTCAGTCTGCCTGAGCCAACAAGGGAAGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp CAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAAAGGCAGAGAGGACGTTCCTCCACATCTaGAGCACTCCGGGGCTGAGC +
Preference number: 4 (lower is better)
Translates to: QQQTTRNKWLPWFEKAERTFLHI*STPGLS
Trigger: GCTCAGCCCCGGAGTGCTTCAGATGTGGAGGAACGT...CCTCTCTGCCTTTTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp TCTCCTTCCCTTGTTGGCTCAGGCAGACTGAAAGGGGCCATCACCTTGTTGAAGCCAGGTCTGCTTATGTaGCACTCAACTGTGGGAGGT +
Preference number: 4 (lower is better)
Translates to: SPSLVGSGRLKGAITLLKPGLLM*HSTVGG
Trigger: ACCTCCCACAGTTGAGTGGCACATAAGCAGACCTGG...CTTCAACAAGGTGATGGCCCCTTTCAGTCTGCCTGAGCCAACAAGGGAAGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp CATGTCAAACGACCCCAGCTGGGTGCACCGCCTAAGCTCATTGTTTTGGAAATGCCGAGGGGAGTTTGGTaGAGATGCTGTGCTTTCCGT +
Preference number: 4 (lower is better)
Translates to: HVKRPQLGAPPKLIVLEMPRGVW*RCCAFR
Trigger: ACGGAAAGCACAGCATCTGCACCAAACTCCCCTCGG...CATTTCCAAAACAATGAGCTTAGGCGGTGCACCCAGCTGGGGTCGTTTGACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp AGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGTGCAATGCAGATGCCTTCTCGTaGCATGAGGAGAGGGGGTTT +
Preference number: 4 (lower is better)
Translates to: RTPAQWPEKSLHVISRCNADAFS*HEERGF
Trigger: AAACCCCCTCTCCTCATGGCACGAGAAGGCATCTGC...ATTGCACCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp CATGTCAAACGACCCCAGCTGGGTGCACCGCCTAAGCTCATTGTTTTGGAAATGCCTGCTGCAGAGGTGTaGGATGTCTCATGGTTCCTG +
Preference number: 4 (lower is better)
Translates to: HVKRPQLGAPPKLIVLEMPAAEV*DVSWFL
Trigger: CAGGAACCATGAGACATCCCACACCTCTGCAGCAGG...CATTTCCAAAACAATGAGCTTAGGCGGTGCACCCAGCTGGGGTCGTTTGACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp CATGTCAAACGACCCCAGCTGGGTGCACCGCCTAAGCTCATTGTTTTGGAAATGGGTCCGAGGGGAGTTTaGTGCAGATGCTGTGCTTTC +
Preference number: 4 (lower is better)
Translates to: HVKRPQLGAPPKLIVLEMGPRGV*CRCCAF
Trigger: GAAAGCACAGCATCTGCACCAAACTCCCCTCGGACC...CATTTCCAAAACAATGAGCTTAGGCGGTGCACCCAGCTGGGGTCGTTTGACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR CAA 72 bp CTTGTTGGCTCAGGCAGACTGAAAGGGGCCATCACCTaGTTGAAGGCAGCACTTGCCACAGATACTGAATGG +
Preference number: 4 (lower is better)
Translates to: LVGSGRLKGAIT*LKAALATDTEW
Trigger: CCATTCAGTATCTGTGGCAAGTGCTGCCTTCAACAAGGTGATGGCCCCTTTCAGTCTGCCTGAGCCAACAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp GCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCAAGAGGAACTCCCGCTGGAGGTGCCAGATaGAGGGGGCGGCGTCAGTGG +
Preference number: 4 (lower is better)
Translates to: AVKKHFYYIGNEPPRGTPAGGAR*RGRRQW
Trigger: CCACTGACGCCGCCCCCTGCATCTGGCACCTCCAGC...GGGAGTTCCTCTTGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp TGCAAAACCACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAAGCTGGGGCAGACTCTaGACGTCTTCGAGGGGGTAC +
Preference number: 4 (lower is better)
Translates to: CKTTQQQTTRNKWLPWFESWGRL*TSSRGY
Trigger: GTACCCCCTCGAAGACGTCCAGAGTCTGCCCCAGCT...TTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp AATATGAGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGCCTAGGAGGAATAGCTaGGGGGCTGTCCAAGTGCTT +
Preference number: 4 (lower is better)
Translates to: NMRTPAQWPEKSLHVISRPRRNS*GAVQVL
Trigger: AAGCACTTGGACAGCCCCCCAGCTATTCCTCCTAGG...CCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCTCATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp CAGAACCTGCACCTGTACAAGAGGCATACAGCAGAGATGGGAAGAGCATGCAAAAGGGGATGGGCTGTTTaGGAAGAAGGCGTTGCCATG +
Preference number: 4 (lower is better)
Translates to: QNLHLYKRHTAEMGRACKRGWAV*EEGVAM
Trigger: CATGGCAACGCCTTCTTCCCAAACAGCCCATCCCCT...TTTGCATGCTCTTCCCATCTCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp AATATGAGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGAGAAGTGCTTTGTCGTaGAGGAACAGGAGGCCCAGC +
Preference number: 4 (lower is better)
Translates to: NMRTPAQWPEKSLHVISRRSALS*RNRRPS
Trigger: GCTGGGCCTCCTGTTCCTCCACGACAAAGCACTTCT...CCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCTCATATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp AGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGTGCAATACTGGACAGCTTCTTTaGAGCCTTCGCCTATGGACT +
Preference number: 4 (lower is better)
Translates to: RTPAQWPEKSLHVISRCNTGQLL*SLRLWT
Trigger: AGTCCATAGGCGAAGGCTTCAAAGAAGCTGTCCAGT...ATTGCACCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp TCTCCTTCCCTTGTTGGCTCAGGCAGACTGAAAGGGGCCATCACCTTGTTGAAGTCTCGTTCATCTTCTTaGTGGCTAGCTGTTTCCCCT +
Preference number: 4 (lower is better)
Translates to: SPSLVGSGRLKGAITLLKSRSSS*WLAVSP
Trigger: AGGGGAAACAGCTAGCCATCAAGAAGATGAACGAGA...CTTCAACAAGGTGATGGCCCCTTTCAGTCTGCCTGAGCCAACAAGGGAAGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp CATGTCAAACGACCCCAGCTGGGTGCACCGCCTAAGCTCATTGTTTTGGAAATGTCCTGGTCTTGGATTTaGTGGACGAACACCAGGAGA +
Preference number: 4 (lower is better)
Translates to: HVKRPQLGAPPKLIVLEMSWSWI*WTNTRR
Trigger: TCTCCTGGTGTTCGTCCATCAAATCCAAGACCAGGA...CATTTCCAAAACAATGAGCTTAGGCGGTGCACCCAGCTGGGGTCGTTTGACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp CAGAACCTGCACCTGTACAAGAGGCATACAGCAGAGATGGGAAGAGCATGCAAAGGAAGAGGCTTAGGGTaGCGGGGTTCTATTTCTAGG +
Preference number: 4 (lower is better)
Translates to: QNLHLYKRHTAEMGRACKGRGLG*RGSISR
Trigger: CCTAGAAATAGAACCCCGGCACCCTAAGCCTCTTCC...TTTGCATGCTCTTCCCATCTCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp TCTCCTTCCCTTGTTGGCTCAGGCAGACTGAAAGGGGCCATCACCTTGTTGAAGTTGGTGCAGATGCTGTaGTTTCCGTCTCACTTTCAG +
Preference number: 4 (lower is better)
Translates to: SPSLVGSGRLKGAITLLKLVQML*FPSHFQ
Trigger: CTGAAAGTGAGACGGAAAGCACAGCATCTGCACCAA...CTTCAACAAGGTGATGGCCCCTTTCAGTCTGCCTGAGCCAACAAGGGAAGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp CAGAACCTGCACCTGTACAAGAGGCATACAGCAGAGATGGGAAGAGCATGCAAAGGTGGTCCATCTCTATaGATGGATGGGTGTGTGTGC +
Preference number: 4 (lower is better)
Translates to: QNLHLYKRHTAEMGRACKGGPSL*MDGCVC
Trigger: GCACACACACCCATCCATGCATAGAGATGGACCACC...TTTGCATGCTCTTCCCATCTCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp AGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGTGCAATCTTCCTACTAATGGGTaGGGACTGCCTTCATCTGTC +
Preference number: 4 (lower is better)
Translates to: RTPAQWPEKSLHVISRCNLPTNG*GLPSSV
Trigger: GACAGATGAAGGCAGTCCCCACCCATTAGTAGGAAG...ATTGCACCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp AAGAAATGCCCCATATCTGGGAGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGGAAGCACTCCGGGGCTaGGCTTGGCATAGCATATTT +
Preference number: 4 (lower is better)
Translates to: KKCPISGSIAKQVLLHWLEALRG*AWHSIF
Trigger: AAATATGCTATGCCAAGCTCAGCCCCGGAGTGCTTC...CAGCCAGTGCAGCAAAACTTGCTTAGCTATGCTCCCAGATATGGGGCATTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp CAGAACCTGCACCTGTACAAGAGGCATACAGCAGAGATGGGAAGAGCATGCAAACTCGGAGTCAGGTTCTaGAAACCTGTACACTTCAGC +
Preference number: 4 (lower is better)
Translates to: QNLHLYKRHTAEMGRACKLGVRF*KPVHFS
Trigger: GCTGAAGTGTACAGGTTTGCAGAACCTGACTCCGAG...TTTGCATGCTCTTCCCATCTCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp AAGAAATGCCCCATATCTGGGAGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGTTTCTTGGCTCCTGCTaGAGAGGTGTGGGATGTCTC +
Preference number: 4 (lower is better)
Translates to: KKCPISGSIAKQVLLHWLFLGSC*RGVGCL
Trigger: GAGACATCCCACACCTCTGCAGCAGGAGCCAAGAAA...CAGCCAGTGCAGCAAAACTTGCTTAGCTATGCTCCCAGATATGGGGCATTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp GTTTGCATTAAGGAAGAATTTGAAATCGTAGCATTGCCTTCAGCCTTAGTAGTCCTGTGTTGCTGGAGGTaGCAGATGCAGGGGGCGGCG +
Preference number: 4 (lower is better)
Translates to: VCIKEEFEIVALPSALVVLCCWR*QMQGAA
Trigger: CGCCGCCCCCTGCATCTGGCACCTCCAGCAACACAG...GACTACTAAGGCTGAAGGCAATGCTACGATTTCAAATTCTTCCTTAATGCAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp CAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAAAGGCAGAGAGGGCTTTGGATGTGGGTTaGCTAGGAGGAATAGCTGGG +
Preference number: 4 (lower is better)
Translates to: QQQTTRNKWLPWFEKAERALDVG*LGGIAG
Trigger: CCCAGCTATTCCTCCTAGGCAACCCACATCCAAAGC...CCTCTCTGCCTTTTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp AAGAAATGCCCCATATCTGGGAGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGGAAGCAGATCTTGAATaGAAAGGGCTTGCCGAGTGG +
Preference number: 4 (lower is better)
Translates to: KKCPISGSIAKQVLLHWLEADLE*KGLAEW
Trigger: CCACTCGGCAAGCCCTTTTCATTCAAGATCTGCTTC...CAGCCAGTGCAGCAAAACTTGCTTAGCTATGCTCCCAGATATGGGGCATTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp AGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGTGCAATAAGAAGGCGTTGCCATaGTCACTCTTTTTGCCCAAA +
Preference number: 4 (lower is better)
Translates to: RTPAQWPEKSLHVISRCNKKALP*SLFLPK
Trigger: TTTGGGCAAAAAGAGTGATCATGGCAACGCCTTCTT...ATTGCACCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp AGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGCCTTGTAATTTCGAATTCAGATCCTCCTTCTCCTCCTaGAGCACCGTTACGTCCAGC +
Preference number: 4 (lower is better)
Translates to: SIAKQVLLHWLPCNFEFRSSFSS*STVTSS
Trigger: GCTGGACGTAACGGTGCTGCAGGAGGAGAAGGAGGA...TCTGAATTCGAAATTACAAGGCAGCCAGTGCAGCAAAACTTGCTTAGCTATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp AAGAAATGCCCCATATCTGGGAGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGCTATGTGCCCAGGTCTaGTTATGTGCCACTCAACTG +
Preference number: 4 (lower is better)
Translates to: KKCPISGSIAKQVLLHWLLCAQV*LCATQL
Trigger: CAGTTGAGTGGCACATAAGCAGACCTGGGCACATAG...CAGCCAGTGCAGCAAAACTTGCTTAGCTATGCTCCCAGATATGGGGCATTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp CATGTCAAACGACCCCAGCTGGGTGCACCGCCTAAGCTCATTGTTTTGGAAATGCATGATCACTCTTTTTaGCCAAAGGAGGAGGTTGGA +
Preference number: 4 (lower is better)
Translates to: HVKRPQLGAPPKLIVLEMHDHSF*PKEEVG
Trigger: TCCAACCTCCTCCTTTGGGCAAAAAGAGTGATCATG...CATTTCCAAAACAATGAGCTTAGGCGGTGCACCCAGCTGGGGTCGTTTGACATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp AAGATTAACACGGAATACACAGAACCTGCACCTGTACAAGAGGCATACAGCAGAGGCCCAGCAATGGAATaGAGGTCCATCTCCTGTGTC +
Preference number: 4 (lower is better)
Translates to: KINTEYTEPAPVQEAYSRGPAME*RSISCV
Trigger: GACACAGGAGATGGACCTCCATTCCATTGCTGGGCC...TCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTGTGTATTCCGTGTTAATCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp GCACAGGTGCACTCTAAGCCACACACATACAACTTGCATCTTTTGTGTATCTTGCAGGAGGCCCAGCAATaGAATGGAGGTCCATCTCCT +
Preference number: 4 (lower is better)
Translates to: AQVHSKPHTYNLHLLCILQEAQQ*NGGPSP
Trigger: AGGAGATGGACCTCCATTCCATTGCTGGGCCTCCTG...CAAGATACACAAAAGATGCAAGTTGTATGTGTGTGGCTTAGAGTGCACCTGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp AGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGCCTTGTAATTTCGAATTCAGACTGTGTCAGTGGTGGTaGTGGCAGATGCCTTCTCGT +
Preference number: 4 (lower is better)
Translates to: SIAKQVLLHWLPCNFEFRLCQWW*WQMPSR
Trigger: ACGAGAAGGCATCTGCCATCACCACCACTGACACAG...TCTGAATTCGAAATTACAAGGCAGCCAGTGCAGCAAAACTTGCTTAGCTATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp AGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGTGCAATGTAGTTCTTGAGGTCTaGAAAAGGACCTGTATGTTG +
Preference number: 4 (lower is better)
Translates to: RTPAQWPEKSLHVISRCNVVLEV*KRTCML
Trigger: CAACATACAGGTCCTTTTGCAGACCTCAAGAACTAC...ATTGCACCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp AAGATTAACACGGAATACACAGAACCTGCACCTGTACAAGAGGCATACAGCAGAAAACCTCTTCAGCTCTaGACTCAGGGGCTGATCTCC +
Preference number: 4 (lower is better)
Translates to: KINTEYTEPAPVQEAYSRKPLQL*TQGLIS
Trigger: GGAGATCAGCCCCTGAGTGCAGAGCTGAAGAGGTTT...TCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTGTGTATTCCGTGTTAATCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp AATATGAGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGCTATTGGGTGTAAGGTaGGCAAGTCAAAAGTCTCTA +
Preference number: 4 (lower is better)
Translates to: NMRTPAQWPEKSLHVISRLLGVR*ASQKSL
Trigger: TAGAGACTTTTGACTTGCTCACCTTACACCCAATAG...CCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCTCATATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp CATGTCAAACGACCCCAGCTGGGTGCACCGCCTAAGCTCATTGTTTTGGAAATGCTGATTCAAGTAAAGTaGGTTGCCGAGCAATTTCTA +
Preference number: 4 (lower is better)
Translates to: HVKRPQLGAPPKLIVLEMLIQVK*VAEQFL
Trigger: TAGAAATTGCTCGGCAACTCACTTTACTTGAATCAG...CATTTCCAAAACAATGAGCTTAGGCGGTGCACCCAGCTGGGGTCGTTTGACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp AATATGAGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGAAGCAGGGCTGTTATTaGTTGCTTCATACACTCCTT +
Preference number: 4 (lower is better)
Translates to: NMRTPAQWPEKSLHVISRKQGCY*LLHTLL
Trigger: AAGGAGTGTATGAAGCAAGCAATAACAGCCCTGCTT...CCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCTCATATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp ACAAATTCTCTGGTGATTTCACCAGATATTTGTACCCCCAAGTCCCTTGCCCTACCAGGGAGTCTTGGCTaGCCATGGTTTGATTTACAG +
Preference number: 4 (lower is better)
Translates to: TNSLVISPDICTPKSLALPGSLG*PWFDLQ
Trigger: CTGTAAATCAAACCATGGGCAGCCAAGACTCCCTGG...TAGGGCAAGGGACTTGGGGGTACAAATATCTGGTGAAATCACCAGAGAATTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp AAGAAATGCCCCATATCTGGGAGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGACTAATTCTGATGGCTaGACAGCCCGGTATAGATCT +
Preference number: 4 (lower is better)
Translates to: KKCPISGSIAKQVLLHWLTNSDG*TARYRS
Trigger: AGATCTATACCGGGCTGTGCAGCCATCAGAATTAGT...CAGCCAGTGCAGCAAAACTTGCTTAGCTATGCTCCCAGATATGGGGCATTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp AGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGTGCAATCCATCAATGTTCTTCTaGATCTCGTTCATCTTCTTG +
Preference number: 4 (lower is better)
Translates to: RTPAQWPEKSLHVISRCNPSMFF*ISFIFL
Trigger: CAAGAAGATGAACGAGATCCAGAAGAACATTGATGG...ATTGCACCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp CAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAAAGGCAGAGAGGATCTCTATGCATGGATaGGTGTGTGTGCTCCCTTTT +
Preference number: 4 (lower is better)
Translates to: QQQTTRNKWLPWFEKAERISMHG*VCVLPF
Trigger: AAAAGGGAGCACACACACCCATCCATGCATAGAGAT...CCTCTCTGCCTTTTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp GCACAGGTGCACTCTAAGCCACACACATACAACTTGCATCTTTTGTGTATCTTGCCTCTTTTCAATGGCTaGTTGGGCATCAGCTATTGC +
Preference number: 4 (lower is better)
Translates to: AQVHSKPHTYNLHLLCILPLFNG*LGISYC
Trigger: GCAATAGCTGATGCCCAATCAGCCATTGAAAAGAGG...CAAGATACACAAAAGATGCAAGTTGTATGTGTGTGGCTTAGAGTGCACCTGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp TGCAAAACCACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAATAAGTTTGTTCTCCTaGGGTGGAAGGCTCTTCATC +
Preference number: 4 (lower is better)
Translates to: CKTTQQQTTRNKWLPWFEISLFS*GGRLFI
Trigger: GATGAAGAGCCTTCCACCTCAGGAGAACAAACTTAT...TTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp CATGTCAAACGACCCCAGCTGGGTGCACCGCCTAAGCTCATTGTTTTGGAAATGGTCGAATTTCTGCCATaGATGCTTTTACCAAATCAT +
Preference number: 4 (lower is better)
Translates to: HVKRPQLGAPPKLIVLEMVEFLP*MLLPNH
Trigger: ATGATTTGGTAAAAGCATTCATGGCAGAAATTCGAC...CATTTCCAAAACAATGAGCTTAGGCGGTGCACCCAGCTGGGGTCGTTTGACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp TGCAAAACCACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAACCAGGCTTTGATAACTaGCTAAGAAAATGGCCATGG +
Preference number: 4 (lower is better)
Translates to: CKTTQQQTTRNKWLPWFEPGFDN*LRKWPW
Trigger: CCATGGCCATTTTCTTAGTCAGTTATCAAAGCCTGG...TTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp GCACAGGTGCACTCTAAGCCACACACATACAACTTGCATCTTTTGTGTATCTTGAGACTCAGTAGTTCTTaGGGTCTGCAAAAGGACCTG +
Preference number: 4 (lower is better)
Translates to: AQVHSKPHTYNLHLLCILRLSSS*GLQKDL
Trigger: CAGGTCCTTTTGCAGACCTCAAGAACTACTGAGTCT...CAAGATACACAAAAGATGCAAGTTGTATGTGTGTGGCTTAGAGTGCACCTGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp AATATGAGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGCTCAACTGCACAGGCTaGATATATTCCTTTCTAAAC +
Preference number: 4 (lower is better)
Translates to: NMRTPAQWPEKSLHVISRLNCTG*IYSFLN
Trigger: GTTTAGAAAGGAATATATTCAGCCTGTGCAGTTGAG...CCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCTCATATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp CAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAAAGGCAGAGAGGCAAAGAGATCAGTGCTaGCATCCAGTTGTTTTTCTC +
Preference number: 4 (lower is better)
Translates to: QQQTTRNKWLPWFEKAERQRDQC*HPVVFL
Trigger: GAGAAAAACAACTGGATGGCAGCACTGATCTCTTTG...CCTCTCTGCCTTTTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp TGCAAAACCACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAATCAAAAGTCTCTATGTaGCCAGGTCTGCTTATGTGC +
Preference number: 4 (lower is better)
Translates to: CKTTQQQTTRNKWLPWFESKVSM*PGLLMC
Trigger: GCACATAAGCAGACCTGGGCACATAGAGACTTTTGA...TTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp TGCAAAACCACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAATTGGGAAGAAGGCGTTaGCATGATCACTCTTTTTGC +
Preference number: 4 (lower is better)
Translates to: CKTTQQQTTRNKWLPWFELGRRR*HDHSFC
Trigger: GCAAAAAGAGTGATCATGGCAACGCCTTCTTCCCAA...TTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp TCATTACTGAGGACACATGCACATACTGATGGCTGTCAAAGAATGGAATACTACTGTACACTTCAGCACTaGGCAGCCTCATCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: SLLRTHAHTDGCQRMEYYCTLQH*AASSAP
Trigger: AGGAGCAGATGAGGCTGCCCAGTGCTGAAGTGTACA...GTAGTATTCCATTCTTTGACAGCCATCAGTATGTGCATGTGTCCTCAGTAATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp GCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCAAGAGGAACTCCCTGGGGATCCCAGCTTTaGGCTGCACATTCTCTTCGA +
Preference number: 4 (lower is better)
Translates to: AVKKHFYYIGNEPPRGTPWGSQL*AAHSLR
Trigger: TCGAAGAGAATGTGCAGCCCAAAGCTGGGATCCCCA...GGGAGTTCCTCTTGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp GCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCAAGAGGAACTCCCAAACATCTGTGTTGCTaGAGGTGCCAGATGCAGGGG +
Preference number: 4 (lower is better)
Translates to: AVKKHFYYIGNEPPRGTPKHLCC*RCQMQG
Trigger: CCCCTGCATCTGGCACCTCCAGCAACACAGATGTTT...GGGAGTTCCTCTTGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR CAA 72 bp TTGACAAACAAATTCTCTGGTGATTTCACCAGATATTaGTACCCCCAAGTCCCTTGCCCTAATCACGTCCCC +
Preference number: 4 (lower is better)
Translates to: LTNKFSGDFTRY*YPQVPCPNHVP
Trigger: GGGGACGTGATTAGGGCAAGGGACTTGGGGGTACAAATATCTGGTGAAATCACCAGAGAATTTGTTTGTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp TCATTACTGAGGACACATGCACATACTGATGGCTGTCAAAGAATGGAATACTACTCTGCACTCAGGGGCTaGTCTCCATTCTCTATAGCT +
Preference number: 4 (lower is better)
Translates to: SLLRTHAHTDGCQRMEYYSALRG*SPFSIA
Trigger: AGCTATAGAGAATGGAGATCAGCCCCTGAGTGCAGA...GTAGTATTCCATTCTTTGACAGCCATCAGTATGTGCATGTGTCCTCAGTAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp GTTTGCATTAAGGAAGAATTTGAAATCGTAGCATTGCCTTCAGCCTTAGTAGTCTCCTCTCCAGGGTGCTaGGGTACTGCAAAGAGATCA +
Preference number: 4 (lower is better)
Translates to: VCIKEEFEIVALPSALVVSSPGC*GTAKRS
Trigger: TGATCTCTTTGCAGTACCGCAGCACCCTGGAGAGGA...GACTACTAAGGCTGAAGGCAATGCTACGATTTCAAATTCTTCCTTAATGCAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp GCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCAAGAGGAACTCCCGGAGTTTGGTGCAGATaGTGTGCTTTCCGTCTCACT +
Preference number: 4 (lower is better)
Translates to: AVKKHFYYIGNEPPRGTPGVWCR*CAFRLT
Trigger: AGTGAGACGGAAAGCACAGCATCTGCACCAAACTCC...GGGAGTTCCTCTTGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp TGCAAAACCACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAATCTTCCTCTTTTCAATaGCTGATTGGGCATCAGCTA +
Preference number: 4 (lower is better)
Translates to: CKTTQQQTTRNKWLPWFESSSFQ*LIGHQL
Trigger: TAGCTGATGCCCAATCAGCCATTGAAAAGAGGAAGA...TTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp AATATGAGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGTGTTGGCTCAGGCTCTaGAATTTCAAATCTTTCTAT +
Preference number: 4 (lower is better)
Translates to: NMRTPAQWPEKSLHVISRCWLRL*NFKSFY
Trigger: ATAGAAAGATTTGAAATTCCAGAGCCTGAGCCAACA...CCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCTCATATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp GCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCAAGAGGAACTCCCTGTGCCACTCAACTGTaGGAGGTGAGCTCTGAAATG +
Preference number: 4 (lower is better)
Translates to: AVKKHFYYIGNEPPRGTPCATQL*EVSSEM
Trigger: CATTTCAGAGCTCACCTCCCACAGTTGAGTGGCACA...GGGAGTTCCTCTTGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp GCACAGGTGCACTCTAAGCCACACACATACAACTTGCATCTTTTGTGTATCTTGGTAGCTAATTTTTCTTaGCTCCTGCTGCAGAGGTGT +
Preference number: 4 (lower is better)
Translates to: AQVHSKPHTYNLHLLCILVANFS*LLLQRC
Trigger: ACACCTCTGCAGCAGGAGCCAAGAAAAATTAGCTAC...CAAGATACACAAAAGATGCAAGTTGTATGTGTGTGGCTTAGAGTGCACCTGTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp GCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCAAGAGGAACTCCCGGCATTCTCCAGCAGTaGTGGTCCATCTCTATGCAT +
Preference number: 4 (lower is better)
Translates to: AVKKHFYYIGNEPPRGTPGILQQ*WSISMH
Trigger: ATGCATAGAGATGGACCACCACTGCTGGAGAATGCC...GGGAGTTCCTCTTGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR CAA 72 bp AAATGCCCCATATCTGGGAGCATAGCTAAGCAAGTTTaGCTGCACTGGCTGCCTTGTAATTTCGAATTCAGA +
Preference number: 4 (lower is better)
Translates to: KCPISGSIAKQV*LHWLPCNFEFR
Trigger: TCTGAATTCGAAATTACAAGGCAGCCAGTGCAGCAAAACTTGCTTAGCTATGCTCCCAGATATGGGGCATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp AGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGCCTTGTAATTTCGAATTCAGAAGTTTGGGGATAAGTTaGGAAGTGCTTTGTCGTGGA +
Preference number: 4 (lower is better)
Translates to: SIAKQVLLHWLPCNFEFRSLGIS*EVLCRG
Trigger: TCCACGACAAAGCACTTCTCAACTTATCCCCAAACT...TCTGAATTCGAAATTACAAGGCAGCCAGTGCAGCAAAACTTGCTTAGCTATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp CAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAAAGGCAGAGAGGTGCCCACTTATCAATTaGATGAGGAAAACTCTTTTG +
Preference number: 4 (lower is better)
Translates to: QQQTTRNKWLPWFEKAERCPLIN*MRKTLL
Trigger: CAAAAGAGTTTTCCTCATCCAATTGATAAGTGGGCA...CCTCTCTGCCTTTTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp ACAAATTCTCTGGTGATTTCACCAGATATTTGTACCCCCAAGTCCCTTGCCCTAAGTCTTGGCTGCCCATaGTTTGATTTACAGCAAATC +
Preference number: 4 (lower is better)
Translates to: TNSLVISPDICTPKSLALSLGCP*FDLQQI
Trigger: GATTTGCTGTAAATCAAACCATGGGCAGCCAAGACT...TAGGGCAAGGGACTTGGGGGTACAAATATCTGGTGAAATCACCAGAGAATTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp ACAAATTCTCTGGTGATTTCACCAGATATTTGTACCCCCAAGTCCCTTGCCCTACGTCCGAACAAAATTTaGATCTGCGTACATGTGGTA +
Preference number: 4 (lower is better)
Translates to: TNSLVISPDICTPKSLALRPNKI*ICVHVV
Trigger: TACCACATGTACGCAGATCCAAATTTTGTTCGGACG...TAGGGCAAGGGACTTGGGGGTACAAATATCTGGTGAAATCACCAGAGAATTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp TCATTACTGAGGACACATGCACATACTGATGGCTGTCAAAGAATGGAATACTACATTCTCCAGCAGTGGTaGTCCATCTCTATGCATGGA +
Preference number: 4 (lower is better)
Translates to: SLLRTHAHTDGCQRMEYYILQQW*SISMHG
Trigger: TCCATGCATAGAGATGGACCACCACTGCTGGAGAAT...GTAGTATTCCATTCTTTGACAGCCATCAGTATGTGCATGTGTCCTCAGTAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp GCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCAAGAGGAACTCCCCTCAACTGTGGGAGGTaGGCTCTGAAATGTAATGTT +
Preference number: 4 (lower is better)
Translates to: AVKKHFYYIGNEPPRGTPLNCGR*ALKCNV
Trigger: AACATTACATTTCAGAGCTCACCTCCCACAGTTGAG...GGGAGTTCCTCTTGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp AAGATTAACACGGAATACACAGAACCTGCACCTGTACAAGAGGCATACAGCAGATGTCTGCTTGGTATTTaGTCAAATGTGTGGTCTAGT +
Preference number: 4 (lower is better)
Translates to: KINTEYTEPAPVQEAYSRCLLGI*SNVWSS
Trigger: ACTAGACCACACATTTGAGCAAATACCAAGCAGACA...TCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTGTGTATTCCGTGTTAATCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp GCTAACTTGCTTTGTAACTTTTCAGCAACTGGCTACTTAATGCACTATGTTTATTCAGGACCTCAGGGTTaGCCTCTTCTGTCTTCAGGA +
Preference number: 4 (lower is better)
Translates to: ANLLCNFSATGYLMHYVYSGPQG*PLLSSG
Trigger: TCCTGAAGACAGAAGAGGGCAACCCTGAGGTCCTGA...ATAAACATAGTGCATTAAGTAGCCAGTTGCTGAAAAGTTACAAAGCAAGTTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp AGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGCCTTGTAATTTCGAATTCAGATTTGTTCTCCTGAGGTaGAAGGCTCTTCATCAGTTA +
Preference number: 4 (lower is better)
Translates to: SIAKQVLLHWLPCNFEFRFVLLR*KALHQL
Trigger: TAACTGATGAAGAGCCTTCCACCTCAGGAGAACAAA...TCTGAATTCGAAATTACAAGGCAGCCAGTGCAGCAAAACTTGCTTAGCTATGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp GTTTGCATTAAGGAAGAATTTGAAATCGTAGCATTGCCTTCAGCCTTAGTAGTCCCCAAAGGAGGAGGTTaGAGATGTAATGGTGAGCTT +
Preference number: 4 (lower is better)
Translates to: VCIKEEFEIVALPSALVVPKGGG*RCNGEL
Trigger: AAGCTCACCATTACATCTCCAACCTCCTCCTTTGGG...GACTACTAAGGCTGAAGGCAATGCTACGATTTCAAATTCTTCCTTAATGCAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp GTTTGCATTAAGGAAGAATTTGAAATCGTAGCATTGCCTTCAGCCTTAGTAGTCCTTCCAGGACACCATTaGAGTTGTTCAGCTCTTGAA +
Preference number: 4 (lower is better)
Translates to: VCIKEEFEIVALPSALVVLPGHH*SCSALE
Trigger: TTCAAGAGCTGAACAACTTCAATGGTGTCCTGGAAG...GACTACTAAGGCTGAAGGCAATGCTACGATTTCAAATTCTTCCTTAATGCAAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp TCATTACTGAGGACACATGCACATACTGATGGCTGTCAAAGAATGGAATACTACAGGGCTGTTATTGCTTaGTTCATACACTCCTTGTCT +
Preference number: 4 (lower is better)
Translates to: SLLRTHAHTDGCQRMEYYRAVIA*FIHSLS
Trigger: AGACAAGGAGTGTATGAAGCAAGCAATAACAGCCCT...GTAGTATTCCATTCTTTGACAGCCATCAGTATGTGCATGTGTCCTCAGTAATGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp GTTTGCATTAAGGAAGAATTTGAAATCGTAGCATTGCCTTCAGCCTTAGTAGTCTTGGGCATCAGCTATTaGCCACTTATCAATTGGATG +
Preference number: 4 (lower is better)
Translates to: VCIKEEFEIVALPSALVVLGISY*PLINWM
Trigger: CATCCAATTGATAAGTGGGCAATAGCTGATGCCCAA...GACTACTAAGGCTGAAGGCAATGCTACGATTTCAAATTCTTCCTTAATGCAAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp GCTAACTTGCTTTGTAACTTTTCAGCAACTGGCTACTTAATGCACTATGTTTATATTTTTCTTGGCTCCTaGTGCAGAGGTGTGGGATGT +
Preference number: 4 (lower is better)
Translates to: ANLLCNFSATGYLMHYVYIFLGS*CRGVGC
Trigger: ACATCCCACACCTCTGCAGCAGGAGCCAAGAAAAAT...ATAAACATAGTGCATTAAGTAGCCAGTTGCTGAAAAGTTACAAAGCAAGTTAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp GCTAACTTGCTTTGTAACTTTTCAGCAACTGGCTACTTAATGCACTATGTTTATCAGAATCGAACACGCTaGAAACATCTGTGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: ANLLCNFSATGYLMHYVYQNRTR*KHLCCW
Trigger: CCAGCAACACAGATGTTTGCAGCGTGTTCGATTCTG...ATAAACATAGTGCATTAAGTAGCCAGTTGCTGAAAAGTTACAAAGCAAGTTAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp GCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCAAGAGGAACTCCCAAGTTGTTCAGCTCTTaGAAGACTTGTAGAATCTCA +
Preference number: 4 (lower is better)
Translates to: AVKKHFYYIGNEPPRGTPKLFSS*KTCRIS
Trigger: TGAGATTCTACAAGTCTTTCAAGAGCTGAACAACTT...GGGAGTTCCTCTTGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp GCTAACTTGCTTTGTAACTTTTCAGCAACTGGCTACTTAATGCACTATGTTTATCTAATGGGTGGGGACTaGCTTCATCTGTCATTTCTA +
Preference number: 4 (lower is better)
Translates to: ANLLCNFSATGYLMHYVYLMGGD*LHLSFL
Trigger: TAGAAATGACAGATGAAGGCAGTCCCCACCCATTAG...ATAAACATAGTGCATTAAGTAGCCAGTTGCTGAAAAGTTACAAAGCAAGTTAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp GTTTGCATTAAGGAAGAATTTGAAATCGTAGCATTGCCTTCAGCCTTAGTAGTCTCAAGTAAAGTGAGTTaGCGAGCAATTTCTATTGGG +
Preference number: 4 (lower is better)
Translates to: VCIKEEFEIVALPSALVVSSKVS*RAISIG
Trigger: CCCAATAGAAATTGCTCGGCAACTCACTTTACTTGA...GACTACTAAGGCTGAAGGCAATGCTACGATTTCAAATTCTTCCTTAATGCAAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp TCAAAGAGCTTAGCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCATTTTCAATGGCTGATTaGGCATCAGCTATTGCCCAC +
Preference number: 4 (lower is better)
Translates to: SKSLAVKKHFYYIGNEPPFSMAD*ASAIAH
Trigger: GTGGGCAATAGCTGATGCCCAATCAGCCATTGAAAA...TGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGCTAAGCTCTTTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR TCA 90 bp GCTAACTTGCTTTGTAACTTTTCAGCAACTGGCTACTTAATGCACTATGTTTATGAGTTCCTTCCATTATaGACTCATTGCAACACTGTC +
Preference number: 4 (lower is better)
Translates to: ANLLCNFSATGYLMHYVYEFLPL*THCNTV
Trigger: GACAGTGTTGCAATGAGTTCATAATGGAAGGAACTC...ATAAACATAGTGCATTAAGTAGCCAGTTGCTGAAAAGTTACAAAGCAAGTTAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp GCTAACTTGCTTTGTAACTTTTCAGCAACTGGCTACTTAATGCACTATGTTTATCTGCAAAGAGATCAGTaGTGCCATCCAGTTGTTTTT +
Preference number: 4 (lower is better)
Translates to: ANLLCNFSATGYLMHYVYLQRDQ*CHPVVF
Trigger: AAAAACAACTGGATGGCAGCACTGATCTCTTTGCAG...ATAAACATAGTGCATTAAGTAGCCAGTTGCTGAAAAGTTACAAAGCAAGTTAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CCA 90 bp GCTAACTTGCTTTGTAACTTTTCAGCAACTGGCTACTTAATGCACTATGTTTATTTTTCCATGCCACTTTaGACATTAAGCAGGGCTGTT +
Preference number: 4 (lower is better)
Translates to: ANLLCNFSATGYLMHYVYFSMPL*TLSRAV
Trigger: AACAGCCCTGCTTAATGTCCAAAGTGGCATGGAAAA...ATAAACATAGTGCATTAAGTAGCCAGTTGCTGAAAAGTTACAAAGCAAGTTAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
3UTR CAA 72 bp AGTCCTTTAGTAGACTGTTCTGCTGGTTGTGTTTATTaGGTATTCTTGGTTCAACTCAGATCCACTAAAACA +
Preference number: 4 (lower is better)
Translates to: SPLVDCSAGCVY*VFLVQLRSTKT
Trigger: TGTTTTAGTGGATCTGAGTTGAACCAAGAATACCAAATAAACACAACCAGCAGAACAGTCTACTAAAGGACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR GCA 90 bp GCTAACTTGCTTTGTAACTTTTCAGCAACTGGCTACTTAATGCACTATGTTTATATGATTTCAAAAGCATaGTTGTACTCACTGGTGTCA +
Preference number: 4 (lower is better)
Translates to: ANLLCNFSATGYLMHYVYMISKA*LYSLVS
Trigger: TGACACCAGTGAGTACAAGCATGCTTTTGAAATCAT...ATAAACATAGTGCATTAAGTAGCCAGTTGCTGAAAAGTTACAAAGCAAGTTAGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 90 bp GGCTTGCCGAGTGGTCAGAATCGAACACGCTGCAAACATCTGTGTTaGTGGAGGTGCCAGATGCAGGGGGCGGCGTCAGTGGGGTCCGAG +
Preference number: 5 (lower is better)
Translates to: GLPSGQNRTRCKHLC*WRCQMQGAASVGSE
Trigger: CTCGGACCCCACTGACGCCGCCCCCTGCATCTGGCACCTCCAGCAACACAGATGTTTGCAGCGTGTTCGATTCTGACCACTCGGCAAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CCA 90 bp TTGCCGAGTGGTCAGAATCGAACACGCTGCAAACATCTGTGTTGCTaGAGGTGCCAGATGCAGGGGGCGGCGTCAGTGGGGTCCGAGGGG +
Preference number: 5 (lower is better)
Translates to: LPSGQNRTRCKHLCC*RCQMQGAASVGSEG
Trigger: CCCCTCGGACCCCACTGACGCCGCCCCCTGCATCTGGCACCTCCAGCAACACAGATGTTTGCAGCGTGTTCGATTCTGACCACTCGGCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp CATGTCAAACGACCCCAGCTGGGTGCACCGCCTAAGCTCATTGTTTTGGAAATGAGCAGCCCCCGCCACTaGGGCGCGTTCTCCTCGCTG +
Preference number: 5 (lower is better)
Translates to: HVKRPQLGAPPKLIVLEMSSPRH*GAFSSL
Trigger: CAGCGAGGAGAACGCGCCCAAGTGGCGGGGGCTGCT...CATTTCCAAAACAATGAGCTTAGGCGGTGCACCCAGCTGGGGTCGTTTGACATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS TCA 90 bp AGGCCCAGCAATGGAATGGAGGTCCATCTCCTGTGTCAGTGGTGGTaGTGGCAGATGCCTTCTCGTGCCATGAGGAGAGGGGGTTTGGGG +
Preference number: 5 (lower is better)
Translates to: RPSNGMEVHLLCQWW*WQMPSRAMRRGGLG
Trigger: CCCCAAACCCCCTCTCCTCATGGCACGAGAAGGCATCTGCCATCACCACCACTGACACAGGAGATGGACCTCCATTCCATTGCTGGGCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 90 bp ATCTTGAATGAAAAGGGCTTGCCGAGTGGTCAGAATCGAACACGCTaGAAACATCTGTGTTGCTGGAGGTGCCAGATGCAGGGGGCGGCG +
Preference number: 5 (lower is better)
Translates to: ILNEKGLPSGQNRTR*KHLCCWRCQMQGAA
Trigger: CGCCGCCCCCTGCATCTGGCACCTCCAGCAACACAGATGTTTGCAGCGTGTTCGATTCTGACCACTCGGCAAGCCCTTTTCATTCAAGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CCA 90 bp TATTCTCCTCGGAGTCAGGTTCTGCAAACCTGTACACTTCAGCACTaGGCAGCCTCATCTGCTCCTCCTTCTCCTCCTGCAGCACCGTTA +
Preference number: 5 (lower is better)
Translates to: YSPRSQVLQTCTLQH*AASSAPPSPPAAPL
Trigger: TAACGGTGCTGCAGGAGGAGAAGGAGGAGCAGATGAGGCTGCCCAGTGCTGAAGTGTACAGGTTTGCAGAACCTGACTCCGAGGAGAATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp AATATGAGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGGGGTCCGAGGGGAGTTaGGTGCAGATGCTGTGCTTT +
Preference number: 5 (lower is better)
Translates to: NMRTPAQWPEKSLHVISRGSEGS*VQMLCF
Trigger: AAAGCACAGCATCTGCACCAAACTCCCCTCGGACCC...CCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCTCATATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CCA 90 bp AGTTTTTGGAGGGAGTTTGGGGATAAGTTGAGAAGTGCTTTGTCGTaGAGGAACAGGAGGCCCAGCAATGGAATGGAGGTCCATCTCCTG +
Preference number: 5 (lower is better)
Translates to: SFWREFGDKLRSALS*RNRRPSNGMEVHLL
Trigger: CAGGAGATGGACCTCCATTCCATTGCTGGGCCTCCTGTTCCTCCACGACAAAGCACTTCTCAACTTATCCCCAAACTCCCTCCAAAAACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp CAGAACCTGCACCTGTACAAGAGGCATACAGCAGAGATGGGAAGAGCATGCAAACTGCAAACATCTGTGTaGCTGGAGGTGCCAGATGCA +
Preference number: 5 (lower is better)
Translates to: QNLHLYKRHTAEMGRACKLQTSV*LEVPDA
Trigger: TGCATCTGGCACCTCCAGCAACACAGATGTTTGCAG...TTTGCATGCTCTTCCCATCTCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp CAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAAAGGCAGAGAGGGGCTTTGGATGTGGGTaGCCTAGGAGGAATAGCTGG +
Preference number: 5 (lower is better)
Translates to: QQQTTRNKWLPWFEKAERGFGCG*PRRNSW
Trigger: CCAGCTATTCCTCCTAGGCAACCCACATCCAAAGCC...CCTCTCTGCCTTTTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp AGGACTCCTGCCCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGTGCAATAAGTTGAGAAGTGCTTaGTCGTGGAGGAACAGGAGG +
Preference number: 5 (lower is better)
Translates to: RTPAQWPEKSLHVISRCNKLRSA*SWRNRR
Trigger: CCTCCTGTTCCTCCACGACAAAGCACTTCTCAACTT...ATTGCACCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGGGCAGGAGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS TCA 90 bp TCCACCCAGTGCCGACACACATTTAACACCCTCAACTGCACAGGCTaGATATATTCCTTTCTAAACCTCTTCAGCTCTGCACTCAGGGGC +
Preference number: 5 (lower is better)
Translates to: STQCRHTFNTLNCTG*IYSFLNLFSSALRG
Trigger: GCCCCTGAGTGCAGAGCTGAAGAGGTTTAGAAAGGAATATATTCAGCCTGTGCAGTTGAGGGTGTTAAATGTGTGTCGGCACTGGGTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS TCA 90 bp CTCTATGTGCCCAGGTCTGCTTATGTGCCACTCAACTGTGGGAGGTaGGCTCTGAAATGTAATGTTATGACCTGGGCCATTGTCTCTTGC +
Preference number: 5 (lower is better)
Translates to: LYVPRSAYVPLNCGR*ALKCNVMTWAIVSC
Trigger: GCAAGAGACAATGGCCCAGGTCATAACATTACATTTCAGAGCTCACCTCCCACAGTTGAGTGGCACATAAGCAGACCTGGGCACATAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 90 bp GTACATGTGGTAGGTAAGCCTCTCAATGAGCTTAAGCACTGTCCCTaGCTTGATAATGGGGATCCCAGCTTTGGGCTGCACATTCTCTTC +
Preference number: 5 (lower is better)
Translates to: VHVVGKPLNELKHCP*LDNGDPSFGLHILF
Trigger: GAAGAGAATGTGCAGCCCAAAGCTGGGATCCCCATTATCAAGGCAGGGACAGTGCTTAAGCTCATTGAGAGGCTTACCTACCACATGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CCA 90 bp GCTTTCCGTCTCACTTTCAGGAATCCGACTGTAGCTAATTTTTCTTaGCTCCTGCTGCAGAGGTGTGGGATGTCTCATGGTTCCTGGTCT +
Preference number: 5 (lower is better)
Translates to: AFRLTFRNPTVANFS*LLLQRCGMSHGSWS
Trigger: AGACCAGGAACCATGAGACATCCCACACCTCTGCAGCAGGAGCCAAGAAAAATTAGCTACAGTCGGATTCCTGAAAGTGAGACGGAAAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp TGCAAAACCACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAATGGGGATCCCAGCTTaGGGCTGCACATTCTCTTCG +
Preference number: 5 (lower is better)
Translates to: CKTTQQQTTRNKWLPWFEMGIPA*GCTFSS
Trigger: CGAAGAGAATGTGCAGCCCAAAGCTGGGATCCCCAT...TTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 90 bp GGGATGGGCTGTTTGGGAAGAAGGCGTTGCCATGATCACTCTTTTTaGCCAAAGGAGGAGGTTGGAGATGTAATGGTGAGCTTGAGAAAA +
Preference number: 5 (lower is better)
Translates to: GMGCLGRRRCHDHSF*PKEEVGDVMVSLRK
Trigger: TTTTCTCAAGCTCACCATTACATCTCCAACCTCCTCCTTTGGGCAAAAAGAGTGATCATGGCAACGCCTTCTTCCCAAACAGCCCATCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp CAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAAAGGCAGAGAGGTACTGGACAGCTTCTTaGAAGCCTTCGCCTATGGAC +
Preference number: 5 (lower is better)
Translates to: QQQTTRNKWLPWFEKAERYWTAS*KPSPMD
Trigger: GTCCATAGGCGAAGGCTTCAAAGAAGCTGTCCAGTA...CCTCTCTGCCTTTTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp CAGAACCTGCACCTGTACAAGAGGCATACAGCAGAGATGGGAAGAGCATGCAAAATCTCGTTCATCTTCTaGATGGCTAGCTGTTTCCCC +
Preference number: 5 (lower is better)
Translates to: QNLHLYKRHTAEMGRACKISFIF*MASCFP
Trigger: GGGGAAACAGCTAGCCATCAAGAAGATGAACGAGAT...TTTGCATGCTCTTCCCATCTCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp CCAATGGCCAGAAAAGTCCCTTCACGTGATTTCCAGGTGCAATCAGTTTCCACATCATGGTTCCTGGTCTaGGATTTGATGGACGAACAC +
Preference number: 5 (lower is better)
Translates to: PMARKVPSRDFQVQSVSTSWFLV*DLMDEH
Trigger: GTGTTCGTCCATCAAATCCAAGACCAGGAACCATGA...TGTGGAAACTGATTGCACCTGGAAATCACGTGAAGGGACTTTTCTGGCCATTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp TGCAAAACCACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAAATGTGTCTCTCGTGTTaGGCTCCTACACGTGTAAGA +
Preference number: 5 (lower is better)
Translates to: CKTTQQQTTRNKWLPWFEMCLSC*APTRVR
Trigger: TCTTACACGTGTAGGAGCCAAACACGAGAGACACAT...TTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS TCA 90 bp GTGCCCTTGGATAAACTTATAGATGAGACTGAAGCAGATCTTGAATaGAAAGGGCTTGCCGAGTGGTCAGAATCGAACACGCTGCAAACA +
Preference number: 5 (lower is better)
Translates to: VPLDKLIDETEADLE*KGLAEWSESNTLQT
Trigger: TGTTTGCAGCGTGTTCGATTCTGACCACTCGGCAAGCCCTTTTCATTCAAGATCTGCTTCAGTCTCATCTATAAGTTTATCCAAGGGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 90 bp GATGGCTGCACAGCCCGGTATAGATCTGATTCAAGTAAAGTGAGTTaGCGAGCAATTTCTATTGGGTGTAAGGTGAGCAAGTCAAAAGTC +
Preference number: 5 (lower is better)
Translates to: DGCTARYRSDSSKVS*RAISIGCKVSKSKV
Trigger: GACTTTTGACTTGCTCACCTTACACCCAATAGAAATTGCTCGGCAACTCACTTTACTTGAATCAGATCTATACCGGGCTGTGCAGCCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp AAGATTAACACGGAATACACAGAACCTGCACCTGTACAAGAGGCATACAGCAGACAGGGCTGTTATTGCTaGCTTCATACACTCCTTGTC +
Preference number: 5 (lower is better)
Translates to: KINTEYTEPAPVQEAYSRQGCYC*LHTLLV
Trigger: GACAAGGAGTGTATGAAGCAAGCAATAACAGCCCTG...TCTGCTGTATGCCTCTTGTACAGGTGCAGGTTCTGTGTATTCCGTGTTAATCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp TCATTACTGAGGACACATGCACATACTGATGGCTGTCAAAGAATGGAATACTACTTCCTGGTCTTGGATTaGATGGACGAACACCAGGAG +
Preference number: 5 (lower is better)
Translates to: SLLRTHAHTDGCQRMEYYFLVLD*MDEHQE
Trigger: CTCCTGGTGTTCGTCCATCAAATCCAAGACCAGGAA...GTAGTATTCCATTCTTTGACAGCCATCAGTATGTGCATGTGTCCTCAGTAATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp AGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGCCTTGTAATTTCGAATTCAGAGAGTTTGGGGATAAGTaGAGAAGTGCTTTGTCGTGG +
Preference number: 5 (lower is better)
Translates to: SIAKQVLLHWLPCNFEFREFGDK*RSALSW
Trigger: CCACGACAAAGCACTTCTCAACTTATCCCCAAACTC...TCTGAATTCGAAATTACAAGGCAGCCAGTGCAGCAAAACTTGCTTAGCTATGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp TGCAAAACCACCCAGCAGCAGACAACCAGGAATAAATGGTTGCCTTGGTTTGAATTGGCTGCCCATGGTTaGATTTACAGCAAATCATTA +
Preference number: 5 (lower is better)
Translates to: CKTTQQQTTRNKWLPWFELAAHG*IYSKSL
Trigger: TAATGATTTGCTGTAAATCAAACCATGGGCAGCCAA...TTCAAACCAAGGCAACCATTTATTCCTGGTTGTCTGCTGCTGGGTGGTTTTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp AGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGCCTTGTAATTTCGAATTCAGATGCTTAGACATAATCTaGGATGGGGAGGATTCAGCT +
Preference number: 5 (lower is better)
Translates to: SIAKQVLLHWLPCNFEFRCLDII*DGEDSA
Trigger: AGCTGAATCCTCCCCATCCAAGATTATGTCTAAGCA...TCTGAATTCGAAATTACAAGGCAGCCAGTGCAGCAAAACTTGCTTAGCTATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp AGCATAGCTAAGCAAGTTTTGCTGCACTGGCTGCCTTGTAATTTCGAATTCAGAGATGTAATGGTGAGCTaGAGAAAACATCAGGTGTCC +
Preference number: 5 (lower is better)
Translates to: SIAKQVLLHWLPCNFEFRDVMVS*RKHQVS
Trigger: GGACACCTGATGTTTTCTCAAGCTCACCATTACATC...TCTGAATTCGAAATTACAAGGCAGCCAGTGCAGCAAAACTTGCTTAGCTATGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS TCA 90 bp GGCTCTGGAATTTCAAATCTTTCTATCAGAAGACTCAGTAGTTCTTaGGGTCTGCAAAAGGACCTGTATGTTGTAAGAAACGTCCGAACA +
Preference number: 5 (lower is better)
Translates to: GSGISNLSIRRLSSS*GLQKDLYVVRNVRT
Trigger: TGTTCGGACGTTTCTTACAACATACAGGTCCTTTTGCAGACCTCAAGAACTACTGAGTCTTCTGATAGAAAGATTTGAAATTCCAGAGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp TCATTACTGAGGACACATGCACATACTGATGGCTGTCAAAGAATGGAATACTACATGAGGAAAACTCTTTaGAACACGTTCCTCCACATC +
Preference number: 5 (lower is better)
Translates to: SLLRTHAHTDGCQRMEYYMRKTL*NTFLHI
Trigger: GATGTGGAGGAACGTGTTCAAAAGAGTTTTCCTCAT...GTAGTATTCCATTCTTTGACAGCCATCAGTATGTGCATGTGTCCTCAGTAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp GTTTGCATTAAGGAAGAATTTGAAATCGTAGCATTGCCTTCAGCCTTAGTAGTCAGGTCCGATCTGATATaGAATAGCGTGGTGAATAGG +
Preference number: 5 (lower is better)
Translates to: VCIKEEFEIVALPSALVVRSDLI*NSVVNR
Trigger: CCTATTCACCACGCTATTCAATATCAGATCGGACCT...GACTACTAAGGCTGAAGGCAATGCTACGATTTCAAATTCTTCCTTAATGCAAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS TCA 90 bp ATAGCACTGACAACTTCCAGGACACCATTGAAGTTGTTCAGCTCTTaGAAGACTTGTAGAATCTCAATTATCCGACTTACTACAGCTACT +
Preference number: 5 (lower is better)
Translates to: IALTTSRTPLKLFSS*KTCRISIIRLTTAT
Trigger: AGTAGCTGTAGTAAGTCGGATAATTGAGATTCTACAAGTCTTTCAAGAGCTGAACAACTTCAATGGTGTCCTGGAAGTTGTCAGTGCTAT
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp GCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCAAGAGGAACTCCCTTGCCCACTTATCAATaGGATGAGGAAAACTCTTTT +
Preference number: 5 (lower is better)
Translates to: AVKKHFYYIGNEPPRGTPLPTYQ*DEENSF
Trigger: AAAAGAGTTTTCCTCATCCAATTGATAAGTGGGCAA...GGGAGTTCCTCTTGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp TCAAAGAGCTTAGCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCATTTTTCCATGCCACTTaGGACATTAAGCAGGGCTGT +
Preference number: 5 (lower is better)
Translates to: SKSLAVKKHFYYIGNEPPFFHAT*DIKQGC
Trigger: ACAGCCCTGCTTAATGTCCAAAGTGGCATGGAAAAA...TGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGCTAAGCTCTTTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp TCAAAGAGCTTAGCTGTGAAAAAGCATTTCTATTATATTGGTAATGAGCCACCACCATGCTGTTTCCCATaGGATTCAAGTTTTCAAAGA +
Preference number: 5 (lower is better)
Translates to: SKSLAVKKHFYYIGNEPPPCCFP*DSSFQR
Trigger: TCTTTGAAAACTTGAATCCAATGGGAAACAGCATGG...TGGTGGCTCATTACCAATATAATAGAAATGCTTTTTCACAGCTAAGCTCTTTGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS-3UTR CAA 90 bp GCTAACTTGCTTTGTAACTTTTCAGCAACTGGCTACTTAATGCACTATGTTTATACTTCATCAGTGCCCTaGGATAAACTTATAGATGAG +
Preference number: 5 (lower is better)
Translates to: ANLLCNFSATGYLMHYVYTSSVP*DKLIDE
Trigger: CTCATCTATAAGTTTATCCAAGGGCACTGATGAAGT...ATAAACATAGTGCATTAAGTAGCCAGTTGCTGAAAAGTTACAAAGCAAGTTAGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CAA 90 bp GGGCTTGCCGAGTGGTCAGAATCGAACACGCTGCAAACATCTGTGTaGCTGGAGGTGCCAGATGCAGGGGGCGGCGTCAGTGGGGTCCGA +
Preference number: 6 (lower is better)
Translates to: GLAEWSESNTLQTSV*LEVPDAGGGVSGVR
Trigger: TCGGACCCCACTGACGCCGCCCCCTGCATCTGGCACCTCCAGCAACACAGATGTTTGCAGCGTGTTCGATTCTGACCACTCGGCAAGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CCA 72 bp GGTCAGAATCGAACACGCTGCAAACATCTGTGTTGCTaGAGGTGCCAGATGCAGGGGGCGGCGTCAGTGGGG +
Preference number: 6 (lower is better)
Translates to: GQNRTRCKHLCC*RCQMQGAASVG
Trigger: CCCCACTGACGCCGCCCCCTGCATCTGGCACCTCCAGCAACACAGATGTTTGCAGCGTGTTCGATTCTGACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 72 bp CCTGCAGCACCGTTACGTCCAGCATCCTCTCCAGGGTaGTGCGGTACTGCAAAGAGATCAGTGCTGCCATCC +
Preference number: 6 (lower is better)
Translates to: PAAPLRPASSPG*CGTAKRSVLPS
Trigger: GGATGGCAGCACTGATCTCTTTGCAGTACCGCAGCACCCTGGAGAGGATGCTGGACGTAACGGTGCTGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CCA 72 bp TACACAGGGGCAAGCAGCAGCCGGGGCAGGACGTACTaGACAGCTTCTTTGAAGCCTTCGCCTATGGACTGC +
Preference number: 6 (lower is better)
Translates to: YTGASSSRGRTY*TASLKPSPMDC
Trigger: GCAGTCCATAGGCGAAGGCTTCAAAGAAGCTGTCCAGTACGTCCTGCCCCGGCTGCTGCTTGCCCCTGTGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 72 bp GCAGCACCGTTACGTCCAGCATCCTCTCCAGGGTGCTaGGGTACTGCAAAGAGATCAGTGCTGCCATCCAGT +
Preference number: 6 (lower is better)
Translates to: AAPLRPASSPGC*GTAKRSVLPSS
Trigger: ACTGGATGGCAGCACTGATCTCTTTGCAGTACCGCAGCACCCTGGAGAGGATGCTGGACGTAACGGTGCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 72 bp CGGCGTCAGTGGGGTCCGAGGGGAGTTTGGTGCAGATaGTGTGCTTTCCGTCTCACTTTCAGGAATCCGACT +
Preference number: 6 (lower is better)
Translates to: RRQWGPRGVWCR*CAFRLTFRNPT
Trigger: AGTCGGATTCCTGAAAGTGAGACGGAAAGCACAGCATCTGCACCAAACTCCCCTCGGACCCCACTGACGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 72 bp AGTGGTCAGAATCGAACACGCTGCAAACATCTGTGTTaGTGGAGGTGCCAGATGCAGGGGGCGGCGTCAGTG +
Preference number: 6 (lower is better)
Translates to: SGQNRTRCKHLC*WRCQMQGAASV
Trigger: CACTGACGCCGCCCCCTGCATCTGGCACCTCCAGCAACACAGATGTTTGCAGCGTGTTCGATTCTGACCACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CCA 72 bp CGGAGTCAGGTTCTGCAAACCTGTACACTTCAGCACTaGGCAGCCTCATCTGCTCCTCCTTCTCCTCCTGCA +
Preference number: 6 (lower is better)
Translates to: RSQVLQTCTLQH*AASSAPPSPPA
Trigger: TGCAGGAGGAGAAGGAGGAGCAGATGAGGCTGCCCAGTGCTGAAGTGTACAGGTTTGCAGAACCTGACTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CCA 72 bp CTTTGTCGTGGAGGAACAGGAGGCCCAGCAATGGAATaGAGGTCCATCTCCTGTGTCAGTGGTGGTGATGGC +
Preference number: 6 (lower is better)
Translates to: LCRGGTGGPAME*RSISCVSGGDG
Trigger: GCCATCACCACCACTGACACAGGAGATGGACCTCCATTCCATTGCTGGGCCTCCTGTTCCTCCACGACAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS TCA 72 bp GCAGCAGCCGGGGCAGGACGTACTGGACAGCTTCTTTaGAGCCTTCGCCTATGGACTGCAAATAAAGTGCTG +
Preference number: 6 (lower is better)
Translates to: AAAGAGRTGQLL*SLRLWTANKVL
Trigger: CAGCACTTTATTTGCAGTCCATAGGCGAAGGCTTCAAAGAAGCTGTCCAGTACGTCCTGCCCCGGCTGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS TCA 72 bp AATGGAATGGAGGTCCATCTCCTGTGTCAGTGGTGGTaGTGGCAGATGCCTTCTCGTGCCATGAGGAGAGGG +
Preference number: 6 (lower is better)
Translates to: NGMEVHLLCQWW*WQMPSRAMRRG
Trigger: CCCTCTCCTCATGGCACGAGAAGGCATCTGCCATCACCACCACTGACACAGGAGATGGACCTCCATTCCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 72 bp TCAGTGGGGTCCGAGGGGAGTTTGGTGCAGATGCTGTaGTTTCCGTCTCACTTTCAGGAATCCGACTGTAGC +
Preference number: 6 (lower is better)
Translates to: SVGSEGSLVQML*FPSHFQESDCS
Trigger: GCTACAGTCGGATTCCTGAAAGTGAGACGGAAAGCACAGCATCTGCACCAAACTCCCCTCGGACCCCACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CCA 72 bp AAGTGCTTTGTCGTGGAGGAACAGGAGGCCCAGCAATaGAATGGAGGTCCATCTCCTGTGTCAGTGGTGGTG +
Preference number: 6 (lower is better)
Translates to: KCFVVEEQEAQQ*NGGPSPVSVVV
Trigger: CACCACCACTGACACAGGAGATGGACCTCCATTCCATTGCTGGGCCTCCTGTTCCTCCACGACAAAGCACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CAA 90 bp TGGTACTGCTGGATCTCGCCTGTGATCTCGGCCACTCTCCTCCTCTaGCTGAAGTTAATAAGCTCTTTCCCGTGTCTCCTCAGGACCTCA +
Preference number: 6 (lower is better)
Translates to: WYCWISPVISATLLL*LKLISSFPCLLRTS
Trigger: TGAGGTCCTGAGGAGACACGGGAAAGAGCTTATTAACTTCAGCAAGAGGAGGAGAGTGGCCGAGATCACAGGCGAGATCCAGCAGTACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 72 bp GTAGGTAAGCCTCTCAATGAGCTTAAGCACTGTCCCTaGCTTGATAATGGGGATCCCAGCTTTGGGCTGCAC +
Preference number: 6 (lower is better)
Translates to: VGKPLNELKHCP*LDNGDPSFGLH
Trigger: GTGCAGCCCAAAGCTGGGATCCCCATTATCAAGGCAGGGACAGTGCTTAAGCTCATTGAGAGGCTTACCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CCA 72 bp AGGGAGTTTGGGGATAAGTTGAGAAGTGCTTTGTCGTaGAGGAACAGGAGGCCCAGCAATGGAATGGAGGTC +
Preference number: 6 (lower is better)
Translates to: REFGDKLRSALS*RNRRPSNGMEV
Trigger: GACCTCCATTCCATTGCTGGGCCTCCTGTTCCTCCACGACAAAGCACTTCTCAACTTATCCCCAAACTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CAA 72 bp TGGATCTCGCCTGTGATCTCGGCCACTCTCCTCCTCTaGCTGAAGTTAATAAGCTCTTTCCCGTGTCTCCTC +
Preference number: 6 (lower is better)
Translates to: WISPVISATLLL*LKLISSFPCLL
Trigger: GAGGAGACACGGGAAAGAGCTTATTAACTTCAGCAAGAGGAGGAGAGTGGCCGAGATCACAGGCGAGATCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CAA 90 bp TTGGCTCCTGCTGCAGAGGTGTGGGATGTCTCATGGTTCCTGGTCTaGGATTTGATGGACGAACACCAGGAGATTTTAGGGGATAGCTGT +
Preference number: 6 (lower is better)
Translates to: LAPAAEVWDVSWFLV*DLMDEHQEILGDSC
Trigger: ACAGCTATCCCCTAAAATCTCCTGGTGTTCGTCCATCAAATCCAAGACCAGGAACCATGAGACATCCCACACCTCTGCAGCAGGAGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS TCA 72 bp AAAGGGGATGGGCTGTTTGGGAAGAAGGCGTTGCCATaGTCACTCTTTTTGCCCAAAGGAGGAGGTTGGAGA +
Preference number: 6 (lower is better)
Translates to: KGDGLFGKKALP*SLFLPKGGGWR
Trigger: TCTCCAACCTCCTCCTTTGGGCAAAAAGAGTGATCATGGCAACGCCTTCTTCCCAAACAGCCCATCCCCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CAA 72 bp TGCCCAAAGGAGGAGGTTGGAGATGTAATGGTGAGCTaGAGAAAACATCAGGTGTCCTCACAGGTTCCCGTG +
Preference number: 6 (lower is better)
Translates to: CPKEEVGDVMVS*RKHQVSSQVPV
Trigger: CACGGGAACCTGTGAGGACACCTGATGTTTTCTCAAGCTCACCATTACATCTCCAACCTCCTCCTTTGGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS TCA 72 bp CCCAGGTCTGCTTATGTGCCACTCAACTGTGGGAGGTaGGCTCTGAAATGTAATGTTATGACCTGGGCCATT +
Preference number: 6 (lower is better)
Translates to: PRSAYVPLNCGR*ALKCNVMTWAI
Trigger: AATGGCCCAGGTCATAACATTACATTTCAGAGCTCACCTCCCACAGTTGAGTGGCACATAAGCAGACCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CCA 72 bp ATAGGCTTTGGATGTGGGTTGCCTAGGAGGAATAGCTaGGGGGCTGTCCAAGTGCTTAGACATAATCTTGGA +
Preference number: 6 (lower is better)
Translates to: IGFGCGLPRRNS*GAVQVLRHNLG
Trigger: TCCAAGATTATGTCTAAGCACTTGGACAGCCCCCCAGCTATTCCTCCTAGGCAACCCACATCCAAAGCCTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CAA 72 bp GAGGTGTGGGATGTCTCATGGTTCCTGGTCTTGGATTaGATGGACGAACACCAGGAGATTTTAGGGGATAGC +
Preference number: 6 (lower is better)
Translates to: EVWDVSWFLVLD*MDEHQEILGDS
Trigger: GCTATCCCCTAAAATCTCCTGGTGTTCGTCCATCAAATCCAAGACCAGGAACCATGAGACATCCCACACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CAA 90 bp CACTCTTTTTGCCCAAAGGAGGAGGTTGGAGATGTAATGGTGAGCTaGAGAAAACATCAGGTGTCCTCACAGGTTCCCGTGGTGGTAACA +
Preference number: 6 (lower is better)
Translates to: HSFCPKEEVGDVMVS*RKHQVSSQVPVVVT
Trigger: TGTTACCACCACGGGAACCTGTGAGGACACCTGATGTTTTCTCAAGCTCACCATTACATCTCCAACCTCCTCCTTTGGGCAAAAAGAGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 72 bp ATTGGGTGTAAGGTGAGCAAGTCAAAAGTCTCTATGTaGCCAGGTCTGCTTATGTGCCACTCAACTGTGGGA +
Preference number: 6 (lower is better)
Translates to: IGCKVSKSKVSM*PGLLMCHSTVG
Trigger: TCCCACAGTTGAGTGGCACATAAGCAGACCTGGGCACATAGAGACTTTTGACTTGCTCACCTTACACCCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 72 bp TGTTTGGGAAGAAGGCGTTGCCATGATCACTCTTTTTaGCCAAAGGAGGAGGTTGGAGATGTAATGGTGAGC +
Preference number: 6 (lower is better)
Translates to: CLGRRRCHDHSF*PKEEVGDVMVS
Trigger: GCTCACCATTACATCTCCAACCTCCTCCTTTGGGCAAAAAGAGTGATCATGGCAACGCCTTCTTCCCAAACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CCA 72 bp CCAATGTCCTTCCCCTCCCAGCCATCAATGTTCTTCTaGATCTCGTTCATCTTCTTGATGGCTAGCTGTTTC +
Preference number: 6 (lower is better)
Translates to: PMSFPSQPSMFF*ISFIFLMASCF
Trigger: GAAACAGCTAGCCATCAAGAAGATGAACGAGATCCAGAAGAACATTGATGGCTGGGAGGGGAAGGACATTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CCA 72 bp CTCACTTTCAGGAATCCGACTGTAGCTAATTTTTCTTaGCTCCTGCTGCAGAGGTGTGGGATGTCTCATGGT +
Preference number: 6 (lower is better)
Translates to: LTFRNPTVANFS*LLLQRCGMSHG
Trigger: ACCATGAGACATCCCACACCTCTGCAGCAGGAGCCAAGAAAAATTAGCTACAGTCGGATTCCTGAAAGTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CAA 72 bp CAGCCATCAATGTTCTTCTGGATCTCGTTCATCTTCTaGATGGCTAGCTGTTTCCCCTTCATCTGCTGGCTG +
Preference number: 6 (lower is better)
Translates to: QPSMFFWISFIF*MASCFPFICWL
Trigger: CAGCCAGCAGATGAAGGGGAAACAGCTAGCCATCAAGAAGATGAACGAGATCCAGAAGAACATTGATGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CAA 72 bp AGCACTGTCCCTGCCTTGATAATGGGGATCCCAGCTTaGGGCTGCACATTCTCTTCGAATAGAATATTCTCC +
Preference number: 6 (lower is better)
Translates to: STVPALIMGIPA*GCTFSSNRIFS
Trigger: GGAGAATATTCTATTCGAAGAGAATGTGCAGCCCAAAGCTGGGATCCCCATTATCAAGGCAGGGACAGTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CAA 90 bp CCTGCTGCAGAGGTGTGGGATGTCTCATGGTTCCTGGTCTTGGATTaGATGGACGAACACCAGGAGATTTTAGGGGATAGCTGTATTTTT +
Preference number: 6 (lower is better)
Translates to: PAAEVWDVSWFLVLD*MDEHQEILGDSCIF
Trigger: AAAAATACAGCTATCCCCTAAAATCTCCTGGTGTTCGTCCATCAAATCCAAGACCAGGAACCATGAGACATCCCACACCTCTGCAGCAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS CAA 90 bp TTTGTAAGTTTTTGGAGGGAGTTTGGGGATAAGTTGAGAAGTGCTTaGTCGTGGAGGAACAGGAGGCCCAGCAATGGAATGGAGGTCCAT +
Preference number: 6 (lower is better)
Translates to: FVSFWREFGDKLRSA*SWRNRRPSNGMEVH
Trigger: ATGGACCTCCATTCCATTGCTGGGCCTCCTGTTCCTCCACGACAAAGCACTTCTCAACTTATCCCCAAACTCCCTCCAAAAACTTACAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS TCA 72 bp AGCCATCAATGTTCTTCTGGATCTCGTTCATCTTCTTaGTGGCTAGCTGTTTCCCCTTCATCTGCTGGCTGT +
Preference number: 6 (lower is better)
Translates to: SHQCSSGSRSSS*WLAVSPSSAGC
Trigger: ACAGCCAGCAGATGAAGGGGAAACAGCTAGCCATCAAGAAGATGAACGAGATCCAGAAGAACATTGATGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS TCA 72 bp TGCCGACACACATTTAACACCCTCAACTGCACAGGCTaGATATATTCCTTTCTAAACCTCTTCAGCTCTGCA +
Preference number: 6 (lower is better)
Translates to: CRHTFNTLNCTG*IYSFLNLFSSA
Trigger: TGCAGAGCTGAAGAGGTTTAGAAAGGAATATATTCAGCCTGTGCAGTTGAGGGTGTTAAATGTGTGTCGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 72 bp ACAGCCCGGTATAGATCTGATTCAAGTAAAGTGAGTTaGCGAGCAATTTCTATTGGGTGTAAGGTGAGCAAG +
Preference number: 6 (lower is better)
Translates to: TARYRSDSSKVS*RAISIGCKVSK
Trigger: CTTGCTCACCTTACACCCAATAGAAATTGCTCGGCAACTCACTTTACTTGAATCAGATCTATACCGGGCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 72 bp TTCCATGCCACTTTGGACATTAAGCAGGGCTGTTATTaGTTGCTTCATACACTCCTTGTCTTCTTGATCTTC +
Preference number: 6 (lower is better)
Translates to: FHATLDIKQGCY*LLHTLLVFLIF
Trigger: GAAGATCAAGAAGACAAGGAGTGTATGAAGCAAGCAATAACAGCCCTGCTTAATGTCCAAAGTGGCATGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7
CDS GCA 72 bp ATACATTTCTCAAACCACAAAGTGAGGTTAGTGGTGTaGCGAATCATCTTCAGAAGGTTGGGAGAATTAATT +
Preference number: 6 (lower is better)
Translates to: IHFSNHKVRLVV*RIIFRRLGELI
Trigger: AATTAATTCTCCCAACCTTCTGAAGATGATTCGGCACACCACTAACCTCACTTTGTGGTTTGAGAAATGTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068714.7