Pregenerated sensors for SORD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027227Ensembl transcript IDs: ENSMUST00000110551.4
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTTGTCTGGGTCCAGACAAGTTCCTTTTATTCTCCTCAAATAAATaGCACTTAACTAGAGAAACATTGTGCTCTGAACAGCTGACCAAA | + |
|
Preference number: 1 (lower is better) Translates to: PCLGPDKFLLFSSNK*HLTRETLCSEQLTK Trigger: TTTGGTCAGCTGTTCAGAGCACAATGTTTCTCTAGTTAAGTGTCATTTATTTGAGGAGAATAAAAGGAACTTGTCTGGACCCAGACAAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR-3UTR GCA 90 bp | GGCATGCGTGTCTCCTCACCCAAGGAAGGTACTAGAGAAAAGGCGTTCCCAGGATTCAAAAGAAAGTTCTaGATTTACGGCCTCCCCTTC | + |
|
Preference number: 2 (lower is better) Translates to: GMRVSSPKEGTREKAFPGFKRKF*IYGLPF Trigger: GAAGGGGAGGCCGTAAATGCAGAACTTTCTTTTGAA...TCCTGGGAACGCCTTTTCTCTAGTACCTTCCTTGGGTGAGGAGACACGCATGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR-3UTR TCA 90 bp | GAATGTAAGCTAGGGTACCTCATCTGGGATTTATCTTATTCTTCCAGATCAGTTTTAGCTCTCGGATGCTaGGAGAGTGGGCTGAGGGCA | + |
|
Preference number: 2 (lower is better) Translates to: ECKLGYLIWDLSYSSRSVLALGC*ESGLRA Trigger: TGCCCTCAGCCCACTCTCTCAGCATCCGAGAGCTAA...AACTGATCTGGAAGAATAAGATAAATCCCAGATGAGGTACCCTAGCTTACATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR-3UTR CCA 90 bp | GCATGCCCACTCCTCTTAGGCTCTCCGCTTATGAGTTTATTATTTTTACCATTCCGGATGCTGAGAGAGTaGGCTGAGGGCATAGATCAA | + |
|
Preference number: 2 (lower is better) Translates to: ACPLLLGSPLMSLLFLPFRMLRE*AEGIDQ Trigger: TTGATCTATGCCCTCAGCCCACTCTCTCAGCATCCG...GAATGGTAAAAATAATAAACTCATAAGCGGAGAGCCTAAGAGGAGTGGGCATGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR-3UTR TCA 90 bp | GAATGTAAGCTAGGGTACCTCATCTGGGATTTATCTTATTCTTCCAGATCAGTTTGTGCTCTGAACAGCTaGCCAAAAGTTCAGCCCTGG | + |
|
Preference number: 2 (lower is better) Translates to: ECKLGYLIWDLSYSSRSVCALNS*PKVQPW Trigger: CCAGGGCTGAACTTTTGGTCAGCTGTTCAGAGCACA...AACTGATCTGGAAGAATAAGATAAATCCCAGATGAGGTACCCTAGCTTACATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR-3UTR TCA 90 bp | ATAAAGAAAAGCCCTATGATGAAATTACGCTGTGATACCCATCCGACAGATATCTACTGCTCCTGCTCATaGATGAGCAGTGTTGGGAAG | + |
|
Preference number: 2 (lower is better) Translates to: IKKSPMMKLRCDTHPTDIYCSCS*MSSVGK Trigger: CTTCCCAACACTGCTCATTCATGAGCAGGAGCAGTA...GATATCTGTCGGATGGGTATCACAGCGTAATTTCATCATAGGGCTTTTCTTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR-3UTR TCA 90 bp | TACCTCATCTGGGATTTATCTTATTCTTCCAGATCAGTTCCTTGTCTGGGTCCAAGAAACATTGTGCTCTaGACAGCTGACCAAAAGTTC | + |
|
Preference number: 2 (lower is better) Translates to: YLIWDLSYSSRSVPCLGPRNIVL*TADQKF Trigger: GAACTTTTGGTCAGCTGTTCAGAGCACAATGTTTCT...TGGACCCAGACAAGGAACTGATCTGGAAGAATAAGATAAATCCCAGATGAGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR-3UTR GCA 90 bp | ATAAAGAAAAGCCCTATGATGAAATTACGCTGTGATACCCATCCGACAGATATCGGTGGGCCTCCACTTTaGAAATGTAAGGACAGAATT | + |
|
Preference number: 2 (lower is better) Translates to: IKKSPMMKLRCDTHPTDIGGPPL*KCKDRI Trigger: AATTCTGTCCTTACATTTGCAAAGTGGAGGCCCACC...GATATCTGTCGGATGGGTATCACAGCGTAATTTCATCATAGGGCTTTTCTTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR-3UTR TCA 90 bp | ATAAAGAAAAGCCCTATGATGAAATTACGCTGTGATACCCATCCGACAGATATCAGAATTCTTAGTAGCTaGGACAGAGGTAGTCTTTGG | + |
|
Preference number: 2 (lower is better) Translates to: IKKSPMMKLRCDTHPTDIRILSS*DRGSLW Trigger: CCAAAGACTACCTCTGTCTCAGCTACTAAGAATTCT...GATATCTGTCGGATGGGTATCACAGCGTAATTTCATCATAGGGCTTTTCTTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR-3UTR GCA 90 bp | GAATGTAAGCTAGGGTACCTCATCTGGGATTTATCTTATTCTTCCAGATCAGTTACTAGAGAAACATTGTaGTCTGAACAGCTGACCAAA | + |
|
Preference number: 2 (lower is better) Translates to: ECKLGYLIWDLSYSSRSVTRETL*SEQLTK Trigger: TTTGGTCAGCTGTTCAGAGCACAATGTTTCTCTAGT...AACTGATCTGGAAGAATAAGATAAATCCCAGATGAGGTACCCTAGCTTACATTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR TCA 72 bp | GGTTGCCTAGCAACCAATACTGCTCCTGCTCATGAATaGGCAGTGTTGGGAAGGTGGGCCTCCACTTTGCAA | + |
|
Preference number: 3 (lower is better) Translates to: GCLATNTAPAHE*AVLGRWASTLQ Trigger: TTGCAAAGTGGAGGCCCACCTTCCCAACACTGCTCATTCATGAGCAGGAGCAGTATTGGTTGCTAGGCAACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR CCA 72 bp | CAACCAATACTGCTCCTGCTCATGAATGAGCAGTGTTaGGAAGGTGGGCCTCCACTTTGCAAATGTAAGGAC | + |
|
Preference number: 3 (lower is better) Translates to: QPILLLLMNEQC*EGGPPLCKCKD Trigger: GTCCTTACATTTGCAAAGTGGAGGCCCACCTTCCCAACACTGCTCATTCATGAGCAGGAGCAGTATTGGTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR TCA 72 bp | CCACTTTGCAAATGTAAGGACAGAATTCTTAGTAGCTaGGACAGAGGTAGTCTTTGGGCAGAGCCGAGTGCC | + |
|
Preference number: 3 (lower is better) Translates to: PLCKCKDRILSS*DRGSLWAEPSA Trigger: GGCACTCGGCTCTGCCCAAAGACTACCTCTGTCTCAGCTACTAAGAATTCTGTCCTTACATTTGCAAAGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR GCA 72 bp | CACTCTCTGGCAATCACAGTAGAACACACAAAGGCATaGGTGTCTCCTCACCCAAGGAAGGTACTAGAGAAA | + |
|
Preference number: 3 (lower is better) Translates to: HSLAITVEHTKA*VSPHPRKVLEK Trigger: TTTCTCTAGTACCTTCCTTGGGTGAGGAGACACGCATGCCTTTGTGTGTTCTACTGTGATTGCCAGAGAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR TCA 72 bp | TCTTATAAAGAAAAGCCCTATGATGAAATTACGCTGTaGTACCCATCCGACAGATATCAGCAGCCTCACCCA | + |
|
Preference number: 3 (lower is better) Translates to: SYKEKPYDEITL*YPSDRYQQPHP Trigger: TGGGTGAGGCTGCTGATATCTGTCGGATGGGTATCACAGCGTAATTTCATCATAGGGCTTTTCTTTATAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR-3UTR CAA 90 bp | GAATGTAAGCTAGGGTACCTCATCTGGGATTTATCTTATTCTTCCAGATCAGTTTTAACTAGAGAAACATaGTGCTCTGAACAGCTGACC | + |
|
Preference number: 3 (lower is better) Translates to: ECKLGYLIWDLSYSSRSVLTRET*CSEQLT Trigger: GGTCAGCTGTTCAGAGCACAATGTTTCTCTAGTTAA...AACTGATCTGGAAGAATAAGATAAATCCCAGATGAGGTACCCTAGCTTACATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR CCA 72 bp | GGGATTTATCTTATTCTTCCAGATCAGTTCCTTGTCTaGGTCCAGACAAGTTCCTTTTATTCTCCTCAAATA | + |
|
Preference number: 3 (lower is better) Translates to: GIYLILPDQFLV*VQTSSFYSPQI Trigger: TATTTGAGGAGAATAAAAGGAACTTGTCTGGACCCAGACAAGGAACTGATCTGGAAGAATAAGATAAATCCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR GCA 90 bp | GGCATGCGTGTCTCCTCACCCAAGGAAGGTACTAGAGAAAAGGCGTTCCCAGGAAGTGAGTGGCATAGATaGCCGTCTGGACGGAGGACT | + |
|
Preference number: 4 (lower is better) Translates to: GMRVSSPKEGTREKAFPGSEWHR*PSGRRT Trigger: AGTCCTCCGTCCAGACGGGCATCTATGCCACTCACT...TCCTGGGAACGCCTTTTCTCTAGTACCTTCCTTGGGTGAGGAGACACGCATGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR CCA 90 bp | GGCATGCGTGTCTCCTCACCCAAGGAAGGTACTAGAGAAAAGGCGTTCCCAGGAGGCAACCCGATCTCCTaGTTTCAGATGTTTCACCAA | + |
|
Preference number: 4 (lower is better) Translates to: GMRVSSPKEGTREKAFPGGNPIS*FQMFHQ Trigger: TTGGTGAAACATCTGAAACCAGGAGATCGGGTTGCC...TCCTGGGAACGCCTTTTCTCTAGTACCTTCCTTGGGTGAGGAGACACGCATGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR CCA 90 bp | TACCTCATCTGGGATTTATCTTATTCTTCCAGATCAGTTCCTTGTCTGGGTCCAGAACGCCAGGCTCGATaGCAACCCGATCTCCTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: YLIWDLSYSSRSVPCLGPERQAR*QPDLLV Trigger: AACCAGGAGATCGGGTTGCCATCGAGCCTGGCGTTC...TGGACCCAGACAAGGAACTGATCTGGAAGAATAAGATAAATCCCAGATGAGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR CCA 90 bp | GAACACACAAAGGCATGCGTGTCTCCTCACCCAAGGAAGGTACTAGAGAAAAGGCAACTTCCTTGGCTTTaGTCAACCGAGAAGCGGATA | + |
|
Preference number: 4 (lower is better) Translates to: EHTKACVSPHPRKVLEKRQLPWL*STEKRI Trigger: TATCCGCTTCTCGGTTGACCAAAGCCAAGGAAGTTG...CCTTTTCTCTAGTACCTTCCTTGGGTGAGGAGACACGCATGCCTTTGTGTGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR CCA 90 bp | GCATGCCCACTCCTCTTAGGCTCTCCGCTTATGAGTTTATTATTTTTACCATTCGCCGAGCTCAGGTATTaGGTAGTTCTCCAGGCGGAT | + |
|
Preference number: 4 (lower is better) Translates to: ACPLLLGSPLMSLLFLPFAELRY*VVLQAD Trigger: ATCCGCCTGGAGAACTACCCAATACCTGAGCTCGGC...GAATGGTAAAAATAATAAACTCATAAGCGGAGAGCCTAAGAGGAGTGGGCATGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR TCA 90 bp | TACCTCATCTGGGATTTATCTTATTCTTCCAGATCAGTTCCTTGTCTGGGTCCATTACTGGCAATTTCCTaGGGGGTCTCTTTGCCAACC | + |
|
Preference number: 4 (lower is better) Translates to: YLIWDLSYSSRSVPCLGPLLAIS*GVSLPT Trigger: GGTTGGCAAAGAGACCCCTCAGGAAATTGCCAGTAA...TGGACCCAGACAAGGAACTGATCTGGAAGAATAAGATAAATCCCAGATGAGGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR TCA 90 bp | GCATGCCCACTCCTCTTAGGCTCTCCGCTTATGAGTTTATTATTTTTACCATTCACTCTCCTACTTTTGTaGCTGTTCCAGCAGCCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: ACPLLLGSPLMSLLFLPFTLLLL*LFQQPH Trigger: ATGAGGCTGCTGGAACAGTCACAAAAGTAGGAGAGT...GAATGGTAAAAATAATAAACTCATAAGCGGAGAGCCTAAGAGGAGTGGGCATGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR GCA 90 bp | GAATGTAAGCTAGGGTACCTCATCTGGGATTTATCTTATTCTTCCAGATCAGTTCCATCGGCCACGTGTTaGAGTATCGAAACACGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: ECKLGYLIWDLSYSSRSVPSATC*SIETRL Trigger: AAGGCGTGTTTCGATACTGCAACACGTGGCCGATGG...AACTGATCTGGAAGAATAAGATAAATCCCAGATGAGGTACCCTAGCTTACATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR GCA 90 bp | TACCTCATCTGGGATTTATCTTATTCTTCCAGATCAGTTCCTTGTCTGGGTCCACTGGATGGTAAAGTCTaGTCCAACTTCCTTGGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: YLIWDLSYSSRSVPCLGPLDGKV*SNFLGF Trigger: AAAGCCAAGGAAGTTGGAGCAGACTTTACCATCCAG...TGGACCCAGACAAGGAACTGATCTGGAAGAATAAGATAAATCCCAGATGAGGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR GCA 90 bp | GAATGTAAGCTAGGGTACCTCATCTGGGATTTATCTTATTCTTCCAGATCAGTTTTCAAAGGCTTCAACTaGCTTCTCCAGGGGGAATCT | + |
|
Preference number: 4 (lower is better) Translates to: ECKLGYLIWDLSYSSRSVFKGFN*LLQGES Trigger: AGATTCCCCCTGGAGAAGGCAGTTGAAGCCTTTGAA...AACTGATCTGGAAGAATAAGATAAATCCCAGATGAGGTACCCTAGCTTACATTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| 3UTR CAA 72 bp | CATCTGGGATTTATCTTATTCTTCCAGATCAGTTCCTaGTCTGGGTCCAGACAAGTTCCTTTTATTCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: HLGFILFFQISS*SGSRQVPFILL Trigger: GAGGAGAATAAAAGGAACTTGTCTGGACCCAGACAAGGAACTGATCTGGAAGAATAAGATAAATCCCAGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR GCA 90 bp | ATAAAGAAAAGCCCTATGATGAAATTACGCTGTGATACCCATCCGACAGATATCATTCAACGTCTTCGATaGAAGCATGGAAATTGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: IKKSPMMKLRCDTHPTDIIQRLR*KHGNCH Trigger: ATGGCAATTTCCATGCTTGCATCGAAGACGTTGAAT...GATATCTGTCGGATGGGTATCACAGCGTAATTTCATCATAGGGCTTTTCTTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS CCA 90 bp | CAATCTTGCAGTACTCATCTACTTCTCGGGGAACGCCAGGCTCGATaGCAACCCGATCTCCTGGTTTCAGATGTTTCACCAACTCTCCTA | + |
|
Preference number: 5 (lower is better) Translates to: QSCSTHLLLGERQAR*QPDLLVSDVSPTLL Trigger: TAGGAGAGTTGGTGAAACATCTGAAACCAGGAGATCGGGTTGCCATCGAGCCTGGCGTTCCCCGAGAAGTAGATGAGTACTGCAAGATTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS TCA 90 bp | CCCGATCTCCTGGTTTCAGATGTTTCACCAACTCTCCTACTTTTGTaGCTGTTCCAGCAGCCTCATGCCCAAGCACCATTGGCTTTTTCA | + |
|
Preference number: 5 (lower is better) Translates to: PDLLVSDVSPTLLLL*LFQQPHAQAPLAFS Trigger: TGAAAAAGCCAATGGTGCTTGGGCATGAGGCTGCTGGAACAGTCACAAAAGTAGGAGAGTTGGTGAAACATCTGAAACCAGGAGATCGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR CAA 90 bp | GCATGCCCACTCCTCTTAGGCTCTCCGCTTATGAGTTTATTATTTTTACCATTCCTTGAGCAGCTCCCATaGCTTTGGCCACAAGCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: ACPLLLGSPLMSLLFLPFLEQLP*LWPQAK Trigger: CTTTGCTTGTGGCCAAAGCAATGGGAGCTGCTCAAG...GAATGGTAAAAATAATAAACTCATAAGCGGAGAGCCTAAGAGGAGTGGGCATGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR CAA 90 bp | GCATGCCCACTCCTCTTAGGCTCTCCGCTTATGAGTTTATTATTTTTACCATTCAGCCCCACTCCCTTTTaGGCTGTTTCAAAGGCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: ACPLLLGSPLMSLLFLPFSPTPF*AVSKAS Trigger: TGAAGCCTTTGAAACAGCCAAAAAGGGAGTGGGGCT...GAATGGTAAAAATAATAAACTCATAAGCGGAGAGCCTAAGAGGAGTGGGCATGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS-3UTR CAA 90 bp | ATAAAGAAAAGCCCTATGATGAAATTACGCTGTGATACCCATCCGACAGATATCTTAGTAACACATCATTaGGGCCGAGCTCAGGTATTG | + |
|
Preference number: 5 (lower is better) Translates to: IKKSPMMKLRCDTHPTDILVTHH*GRAQVL Trigger: CAATACCTGAGCTCGGCCCAAATGATGTGTTACTAA...GATATCTGTCGGATGGGTATCACAGCGTAATTTCATCATAGGGCTTTTCTTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS GCA 72 bp | CAATCACCAAGGTCCCACCAGAGTGAGTGGCATAGATaGCCGTCTGGACGGAGGACTCGGCTCCTGTGCACT | + |
|
Preference number: 6 (lower is better) Translates to: QSPRSHQSEWHR*PSGRRTRLLCT Trigger: AGTGCACAGGAGCCGAGTCCTCCGTCCAGACGGGCATCTATGCCACTCACTCTGGTGGGACCTTGGTGATTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS TCA 72 bp | CCACTTCCCGAATGGCTGCGTGCACCAGGGGTAAATTaGCCATCTCGGCGCCCATTCCCACAATCACCAAGG | + |
|
Preference number: 6 (lower is better) Translates to: PLPEWLRAPGVN*PSRRPFPQSPR Trigger: CCTTGGTGATTGTGGGAATGGGCGCCGAGATGGTCAATTTACCCCTGGTGCACGCAGCCATTCGGGAAGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS CCA 72 bp | AGTACTCATCTACTTCTCGGGGAACGCCAGGCTCGATaGCAACCCGATCTCCTGGTTTCAGATGTTTCACCA | + |
|
Preference number: 6 (lower is better) Translates to: STHLLLGERQAR*QPDLLVSDVSP Trigger: TGGTGAAACATCTGAAACCAGGAGATCGGGTTGCCATCGAGCCTGGCGTTCCCCGAGAAGTAGATGAGTACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS CAA 72 bp | AAATCCCCACCGAGTGCATCTTTAGTAACACATCATTaGGGCCGAGCTCAGGTATTGGGTAGTTCTCCAGGC | + |
|
Preference number: 6 (lower is better) Translates to: KSPPSASLVTHH*GRAQVLGSSPG Trigger: GCCTGGAGAACTACCCAATACCTGAGCTCGGCCCAAATGATGTGTTACTAAAGATGCACTCGGTGGGGATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||
| CDS TCA 72 bp | CTGGTTTCAGATGTTTCACCAACTCTCCTACTTTTGTaGCTGTTCCAGCAGCCTCATGCCCAAGCACCATTG | + |
|
Preference number: 6 (lower is better) Translates to: LVSDVSPTLLLL*LFQQPHAQAPL Trigger: CAATGGTGCTTGGGCATGAGGCTGCTGGAACAGTCACAAAAGTAGGAGAGTTGGTGAAACATCTGAAACCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110551.4 |
||