Pregenerated sensors for SOD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022982

Ensembl transcript IDs: ENSMUST00000023707.11

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	TTCAGATTACAGTTTAATGGTTTGAGGGTAGCAGATGAGTCTGAGACTCAGACCTCTGCTCGAAGTGGATaGTTCCCTGCACCGGACCGT	+
Preference number: 4 (lower is better) Translates to: FRLQFNGLRVADESETQTSARSG*FPAPDR Trigger: ACGGTCCGGTGCAGGGAACCATCCACTTCGAGCAGA...GGTCTGAGTCTCAGACTCATCTGCTACCCTCAAACCATTAAACTGTAATCTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023707.11
CDS-3UTR TCA 90 bp	CTCTTCAGATTACAGTTTAATGGTTTGAGGGTAGCAGATGAGTCTGAGACTCAGCCATTGTACGGCCAATaGTGGAATGCTCTCCTGAGA	+
Preference number: 4 (lower is better) Translates to: LFRLQFNGLRVADESETQPLYGQ*WNALLR Trigger: TCTCAGGAGAGCATTCCATCATTGGCCGTACAATGG...CTGAGTCTCAGACTCATCTGCTACCCTCAAACCATTAAACTGTAATCTGAAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023707.11
CDS-3UTR CCA 90 bp	TTCAGATTACAGTTTAATGGTTTGAGGGTAGCAGATGAGTCTGAGACTCAGACCACGTGGAACCCATGCTaGCCTTCAGTTAATCCTGTA	+
Preference number: 4 (lower is better) Translates to: FRLQFNGLRVADESETQTTWNPC*PSVNPV Trigger: TACAGGATTAACTGAAGGCCAGCATGGGTTCCACGT...GGTCTGAGTCTCAGACTCATCTGCTACCCTCAAACCATTAAACTGTAATCTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023707.11
CDS-3UTR CCA 90 bp	TTCAGATTACAGTTTAATGGTTTGAGGGTAGCAGATGAGTCTGAGACTCAGACCAATGAGGTCCTGCACTaGTACAGCCTTGTGTATTGT	+
Preference number: 4 (lower is better) Translates to: FRLQFNGLRVADESETQTNEVLH*YSLVYC Trigger: ACAATACACAAGGCTGTACCAGTGCAGGACCTCATT...GGTCTGAGTCTCAGACTCATCTGCTACCCTCAAACCATTAAACTGTAATCTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023707.11
CDS-3UTR CCA 90 bp	CTCTTCAGATTACAGTTTAATGGTTTGAGGGTAGCAGATGAGTCTGAGACTCAGTCATCTTGTTTCTCATaGACCACCATTGTACGGCCA	+
Preference number: 4 (lower is better) Translates to: LFRLQFNGLRVADESETQSSCFS*TTIVRP Trigger: TGGCCGTACAATGGTGGTCCATGAGAAACAAGATGA...CTGAGTCTCAGACTCATCTGCTACCCTCAAACCATTAAACTGTAATCTGAAGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023707.11
CDS-3UTR CAA 90 bp	CTCTTCAGATTACAGTTTAATGGTTTGAGGGTAGCAGATGAGTCTGAGACTCAGTGCACTGGTACAGCCTaGTGTATTGTCCCCATACTG	+
Preference number: 5 (lower is better) Translates to: LFRLQFNGLRVADESETQCTGTA*CIVPIL Trigger: CAGTATGGGGACAATACACAAGGCTGTACCAGTGCA...CTGAGTCTCAGACTCATCTGCTACCCTCAAACCATTAAACTGTAATCTGAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023707.11
CDS-3UTR CAA 90 bp	CTCTTCAGATTACAGTTTAATGGTTTGAGGGTAGCAGATGAGTCTGAGACTCAGTCTTCAATGGACACATaGGCCACACCGTCCTTTCCA	+
Preference number: 5 (lower is better) Translates to: LFRLQFNGLRVADESETQSSMDT*ATPSFP Trigger: TGGAAAGGACGGTGTGGCCAATGTGTCCATTGAAGA...CTGAGTCTCAGACTCATCTGCTACCCTCAAACCATTAAACTGTAATCTGAAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023707.11
CDS GCA 72 bp	TGTCCTGACAACACAACTGGTTCACCGCTTGCCTTCTaGTCGAAGTGGATGGTTCCCTGCACCGGACCGTCG	+
Preference number: 6 (lower is better) Translates to: CPDNTTGSPLAF*SKWMVPCTGPS Trigger: CGACGGTCCGGTGCAGGGAACCATCCACTTCGAGCAGAAGGCAAGCGGTGAACCAGTTGTGTTGTCAGGACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023707.11

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu