RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SOCS6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056153

Ensembl transcript IDs: ENSMUST00000070116.12, ENSMUST00000123826.2, ENSMUST00000125362.8, ENSMUST00000145120.3, ENSMUST00000236108.2

Found 132 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTAAAAGCAAGGGTTGGAGGTGCCACTGAATCTCTTGCCTATACTTaGGGCCCTTTTCCTTCATCCAGCCTTGATATGAGGGTTTGTTCC +
Preference number: 1 (lower is better)
Translates to: LKARVGGATESLAYT*GPFPSSSLDMRVCS
Trigger: GGAACAAACCCTCATATCAAGGCTGGATGAAGGAAAAGGGCCCCAAGTATAGGCAAGAGATTCAGTGGCACCTCCAACCCTTGCTTTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR TCA 90 bp ACTCTCCATAGCTCTCTTATTTATAAAAATGTGTTAAGTGTCTTATaGAGCCCCAAATTAACCCTCAGCCTCCAGCATTTCTGGTGGTGG +
Preference number: 1 (lower is better)
Translates to: TLHSSLIYKNVLSVL*SPKLTLSLQHFWWW
Trigger: CCACCACCAGAAATGCTGGAGGCTGAGGGTTAATTTGGGGCTTCATAAGACACTTAACACATTTTTATAAATAAGAGAGCTATGGAGAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR GCA 90 bp GGGGACAGTCCTGAGACTTCTATGAGCCATGATTGCCAGGACATGTaGATATTTTTGAAACATGAAGTCATCTCAACCTTCATCATTAAT +
Preference number: 1 (lower is better)
Translates to: GDSPETSMSHDCQDM*IFLKHEVISTFIIN
Trigger: ATTAATGATGAAGGTTGAGATGACTTCATGTTTCAAAAATATGCACATGTCCTGGCAATCATGGCTCATAGAAGTCTCAGGACTGTCCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR TCA 90 bp AAACATGAAGTCATCTCAACCTTCATCATTAATACAGTGACTATGTaGCAACACCTGCCATCTAATGTAGATGTGGGGACTGTCAACTCA +
Preference number: 1 (lower is better)
Translates to: KHEVISTFIINTVTM*QHLPSNVDVGTVNS
Trigger: TGAGTTGACAGTCCCCACATCTACATTAGATGGCAGGTGTTGTCACATAGTCACTGTATTAATGATGAAGGTTGAGATGACTTCATGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR-3UTR CCA 90 bp AAGCCCCAAATTAACCCTCAGCCTCCAGCATTTCTGGTGGTGGAGTATACAGTAGGTTTAGAGTTAGAATaGTCAAACACAGCACACTGT +
Preference number: 2 (lower is better)
Translates to: KPQINPQPPAFLVVEYTVGLELE*SNTAHC
Trigger: ACAGTGTGCTGTGTTTGACCATTCTAACTCTAAACC...TACTGTATACTCCACCACCAGAAATGCTGGAGGCTGAGGGTTAATTTGGGGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR-3UTR TCA 90 bp GTGTCATACAAAAGTCAGTATTTCCCATTGTTTCCCACTTCTGTCAGATGGATGAATACAGTGACTATGTaGCAACACCTGCCATCTAAT +
Preference number: 2 (lower is better)
Translates to: VSYKSQYFPLFPTSVRWMNTVTM*QHLPSN
Trigger: ATTAGATGGCAGGTGTTGTCACATAGTCACTGTATT...CATCCATCTGACAGAAGTGGGAAACAATGGGAAATACTGACTTTTGTATGACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR-3UTR CCA 90 bp GTGTCATACAAAAGTCAGTATTTCCCATTGTTTCCCACTTCTGTCAGATGGATGCAGCAAAGACTTCAATaGCGATGTAAGTCTGTAAAC +
Preference number: 2 (lower is better)
Translates to: VSYKSQYFPLFPTSVRWMQQRLQ*RCKSVN
Trigger: GTTTACAGACTTACATCGCCATTGAAGTCTTTGCTG...CATCCATCTGACAGAAGTGGGAAACAATGGGAAATACTGACTTTTGTATGACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR-3UTR CCA 90 bp ACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTTTTGTACAGCAAAGACTTCAATaGCGATGTAAGTCTGTAAAC +
Preference number: 2 (lower is better)
Translates to: THTNTHTPHKNQGYLTFVQQRLQ*RCKSVN
Trigger: GTTTACAGACTTACATCGCCATTGAAGTCTTTGCTG...TACAAAAGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
3UTR CAA 90 bp CCTGAGACTTCTATGAGCCATGATTGCCAGGACATGTGCATATTTTaGAAACATGAAGTCATCTCAACCTTCATCATTAATACAGTGACT +
Preference number: 2 (lower is better)
Translates to: PETSMSHDCQDMCIF*KHEVISTFIINTVT
Trigger: AGTCACTGTATTAATGATGAAGGTTGAGATGACTTCATGTTTCAAAAATATGCACATGTCCTGGCAATCATGGCTCATAGAAGTCTCAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR-3UTR TCA 90 bp GAGTTAGCCTATTTGGCACATCATTTTATTCAACAGAAAACTGTCGCTCTGTGTTCATCATTAATACAGTaGCTATGTGACAACACCTGC +
Preference number: 2 (lower is better)
Translates to: ELAYLAHHFIQQKTVALCSSLIQ*LCDNTC
Trigger: GCAGGTGTTGTCACATAGTCACTGTATTAATGATGA...ACACAGAGCGACAGTTTTCTGTTGAATAAAATGATGTGCCAAATAGGCTAACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR CAA 90 bp ATACTTTATGTGTTTCATTTCCTTAATGCTAACGAGTTAGCCTATTaGGCACATCATTTTATTCAACAGAAAACTGTCGCTCTGTGTGGC +
Preference number: 2 (lower is better)
Translates to: ILYVFHFLNANELAY*AHHFIQQKTVALCG
Trigger: GCCACACAGAGCGACAGTTTTCTGTTGAATAAAATGATGTGCCAAATAGGCTAACTCGTTAGCATTAAGGAAATGAAACACATAAAGTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR CCA 72 bp AGGGTTGGAGGTGCCACTGAATCTCTTGCCTATACTTaGGGCCCTTTTCCTTCATCCAGCCTTGATATGAGG +
Preference number: 3 (lower is better)
Translates to: RVGGATESLAYT*GPFPSSSLDMR
Trigger: CCTCATATCAAGGCTGGATGAAGGAAAAGGGCCCCAAGTATAGGCAAGAGATTCAGTGGCACCTCCAACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR-3UTR CAA 90 bp AAGCCCCAAATTAACCCTCAGCCTCCAGCATTTCTGGTGGTGGAGTATACAGTAAGTCAGTATTTCCCATaGTTTCCCACTTCTGTCAGA +
Preference number: 3 (lower is better)
Translates to: KPQINPQPPAFLVVEYTVSQYFP*FPTSVR
Trigger: TCTGACAGAAGTGGGAAACAATGGGAAATACTGACT...TACTGTATACTCCACCACCAGAAATGCTGGAGGCTGAGGGTTAATTTGGGGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR GCA 72 bp GTTGGGGACAGTCCTGAGACTTCTATGAGCCATGATTaGCAGGACATGTGCATATTTTTGAAACATGAAGTC +
Preference number: 3 (lower is better)
Translates to: VGDSPETSMSHD*QDMCIFLKHEV
Trigger: GACTTCATGTTTCAAAAATATGCACATGTCCTGGCAATCATGGCTCATAGAAGTCTCAGGACTGTCCCCAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR-3UTR CAA 90 bp GTATTAATTTCATGGCATATCAACTATGAGACTTCCTTACCCCAACATGACAATAGAGGACAGGGGAAGTaGGGAAAGAGCACTGGGAAG +
Preference number: 3 (lower is better)
Translates to: VLISWHINYETSLPQHDNRGQGK*GKSTGK
Trigger: CTTCCCAGTGCTCTTTCCCAACTTCCCCTGTCCTCT...ATTGTCATGTTGGGGTAAGGAAGTCTCATAGTTGATATGCCATGAAATTAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR TCA 72 bp TGCCTATACTTGGGGCCCTTTTCCTTCATCCAGCCTTaGTATGAGGGTTTGTTCCTAGTCTTAATGGAATTT +
Preference number: 3 (lower is better)
Translates to: CLYLGPFSFIQP*YEGLFLVLMEF
Trigger: AAATTCCATTAAGACTAGGAACAAACCCTCATATCAAGGCTGGATGAAGGAAAAGGGCCCCAAGTATAGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR TCA 72 bp GTCATCTCAACCTTCATCATTAATACAGTGACTATGTaGCAACACCTGCCATCTAATGTAGATGTGGGGACT +
Preference number: 3 (lower is better)
Translates to: VISTFIINTVTM*QHLPSNVDVGT
Trigger: AGTCCCCACATCTACATTAGATGGCAGGTGTTGTCACATAGTCACTGTATTAATGATGAAGGTTGAGATGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR-3UTR CAA 90 bp TATGTAACTGAAAAATCTCTCTCTCTCTTACACACACGAACACACACACACCTCCCACCCTTGAACAAATaGATGACTCTCACACATAAA +
Preference number: 3 (lower is better)
Translates to: YVTEKSLSLLHTRTHTHLPPLNK*MTLTHK
Trigger: TTTATGTGTGAGAGTCATCAATTTGTTCAAGGGTGG...GAGGTGTGTGTGTGTTCGTGTGTGTAAGAGAGAGAGAGATTTTTCAGTTACATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
3UTR-3UTR CAA 90 bp GTATTAATTTCATGGCATATCAACTATGAGACTTCCTTACCCCAACATGACAATCCACCCTTGAACAAATaGATGACTCTCACACATAAA +
Preference number: 3 (lower is better)
Translates to: VLISWHINYETSLPQHDNPPLNK*MTLTHK
Trigger: TTTATGTGTGAGAGTCATCAATTTGTTCAAGGGTGG...ATTGTCATGTTGGGGTAAGGAAGTCTCATAGTTGATATGCCATGAAATTAATAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR CCA 72 bp CTGATGTCATTCAAGGTTGTTGGTTTAGAGTTAGAATaGTCAAACACAGCACACTGTAAAGATTATACAGAA +
Preference number: 3 (lower is better)
Translates to: LMSFKVVGLELE*SNTAHCKDYTE
Trigger: TTCTGTATAATCTTTACAGTGTGCTGTGTTTGACCATTCTAACTCTAAACCAACAACCTTGAATGACATCAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR TCA 90 bp GAGTTAGCCTATTTGGCACATCATTTTATTCAACAGAAAACTGTCGCTCTGTGTGCTCAGGTCCCCGGGTaGGCTGGGGCTGCAGCGGGA +
Preference number: 4 (lower is better)
Translates to: ELAYLAHHFIQQKTVALCAQVPG*AGAAAG
Trigger: TCCCGCTGCAGCCCCAGCTCACCCGGGGACCTGAGC...ACACAGAGCGACAGTTTTCTGTTGAATAAAATGATGTGCCAAATAGGCTAACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR CCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAAGGTCCCCGGGTGAGCTaGGGCTGCAGCGGGACTCAG +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQGPRVS*GCSGTQ
Trigger: CTGAGTCCCGCTGCAGCCCCAGCTCACCCGGGGACC...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR TCA 90 bp AAGCCCCAAATTAACCCTCAGCCTCCAGCATTTCTGGTGGTGGAGTATACAGTAGGCCCGAGAGGCCACTaGAGTTCCTTTGGATTGGGT +
Preference number: 4 (lower is better)
Translates to: KPQINPQPPAFLVVEYTVGPRGH*SSFGLG
Trigger: ACCCAATCCAAAGGAACTTCAGTGGCCTCTCGGGCC...TACTGTATACTCCACCACCAGAAATGCTGGAGGCTGAGGGTTAATTTGGGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR CCA 90 bp GTGTCATACAAAAGTCAGTATTTCCCATTGTTTCCCACTTCTGTCAGATGGATGCTCAGGGCGCGGCTCTaGCTGCAGGTCTCGCAGCTC +
Preference number: 4 (lower is better)
Translates to: VSYKSQYFPLFPTSVRWMLRARL*LQVSQL
Trigger: GAGCTGCGAGACCTGCAGCCAGAGCCGCGCCCTGAG...CATCCATCTGACAGAAGTGGGAAACAATGGGAAATACTGACTTTTGTATGACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR CCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAACTCAGGGCGCGGCTCTaGCTGCAGGTCTCGCAGCTC +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQLRARL*LQVSQL
Trigger: GAGCTGCGAGACCTGCAGCCAGAGCCGCGCCCTGAG...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR CCA 90 bp CACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTTTTGTAACAATGGTCCCCGGGTGAGCTaGGGCTGCAGCGGGACTCAG +
Preference number: 4 (lower is better)
Translates to: HEHTHTSQKPGLSYFCNNGPRVS*GCSGTQ
Trigger: CTGAGTCCCGCTGCAGCCCCAGCTCACCCGGGGACC...ATTGTTACAAAAGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR TCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAAGCTCAGGTCCCCGGGTaGGCTGGGGCTGCAGCGGGA +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKAQVPG*AGAAAG
Trigger: TCCCGCTGCAGCCCCAGCTCACCCGGGGACCTGAGC...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR GCA 90 bp AAGCCCCAAATTAACCCTCAGCCTCCAGCATTTCTGGTGGTGGAGTATACAGTAACCGCCTCTTCAAAGTaGCCATCAGGCTCTCGCTTT +
Preference number: 4 (lower is better)
Translates to: KPQINPQPPAFLVVEYTVTASSK*PSGSRF
Trigger: AAAGCGAGAGCCTGATGGGCACTTTGAAGAGGCGGT...TACTGTATACTCCACCACCAGAAATGCTGGAGGCTGAGGGTTAATTTGGGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR GCA 90 bp TCTCTTACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTTGCCAACTTCCCCTCTaGCTCCCAGCGTGTGATGGG +
Preference number: 4 (lower is better)
Translates to: SLTHTNTHTPHKNQGYLTCQLPL*LPACDG
Trigger: CCCATCACACGCTGGGAGGCAGAGGGGAAGTTGGCA...AGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGTAAGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR GCA 90 bp TCTCTTACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTAAGCGGCACAGGTACTaGAGCGAGCGCACCTGCATG +
Preference number: 4 (lower is better)
Translates to: SLTHTNTHTPHKNQGYLTKRHRY*SERTCM
Trigger: CATGCAGGTGCGCTCGCTGCAGTACCTGTGCCGCTT...AGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGTAAGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR CCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAAGGTCCCCGGGTGAGCTaGGGCTGCAGCGGGACTCAG +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKGPRVS*GCSGTQ
Trigger: CTGAGTCCCGCTGCAGCCCCAGCTCACCCGGGGACC...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR CCA 90 bp GTGTCATACAAAAGTCAGTATTTCCCATTGTTTCCCACTTCTGTCAGATGGATGACGTGTTCCTCCAGGTaGAGGCTCAGGTCCCCGGGT +
Preference number: 4 (lower is better)
Translates to: VSYKSQYFPLFPTSVRWMTCSSR*RLRSPG
Trigger: ACCCGGGGACCTGAGCCTCCACCTGGAGGAACACGT...CATCCATCTGACAGAAGTGGGAAACAATGGGAAATACTGACTTTTGTATGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR CCA 90 bp ACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTTTTGTAACGTGTTCCTCCAGGTaGAGGCTCAGGTCCCCGGGT +
Preference number: 4 (lower is better)
Translates to: THTNTHTPHKNQGYLTFVTCSSR*RLRSPG
Trigger: ACCCGGGGACCTGAGCCTCCACCTGGAGGAACACGT...TACAAAAGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR CCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAAACGTGTTCCTCCAGGTaGAGGCTCAGGTCCCCGGGT +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQTCSSR*RLRSPG
Trigger: ACCCGGGGACCTGAGCCTCCACCTGGAGGAACACGT...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR TCA 90 bp ACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTTTTGTAGAGCACGCACATCCTTaGGCCCACCAGGAGCTGAAG +
Preference number: 4 (lower is better)
Translates to: THTNTHTPHKNQGYLTFVEHAHP*AHQELK
Trigger: CTTCAGCTCCTGGTGGGCTCAAGGATGTGCGTGCTC...TACAAAAGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR TCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAAGAGCACGCACATCCTTaGGCCCACCAGGAGCTGAAG +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQEHAHP*AHQELK
Trigger: CTTCAGCTCCTGGTGGGCTCAAGGATGTGCGTGCTC...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR TCA 90 bp TCTCTTACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTGGCCCGAGAGGCCACTaGAGTTCCTTTGGATTGGGT +
Preference number: 4 (lower is better)
Translates to: SLTHTNTHTPHKNQGYLTGPRGH*SSFGLG
Trigger: ACCCAATCCAAAGGAACTTCAGTGGCCTCTCGGGCC...AGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGTAAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR GCA 90 bp TATGTAACTGAAAAATCTCTCTCTCTCTTACACACACGAACACACACACACCTCACGCAGTGCCGCCCTTaGCCTTGGTCTTCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: YVTEKSLSLLHTRTHTHLTQCRP*PWSSAW
Trigger: CCAAGCAGAAGACCAAGGGCAAGGGCGGCACTGCGT...GAGGTGTGTGTGTGTTCGTGTGTGTAAGAGAGAGAGAGATTTTTCAGTTACATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR GCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAATGCCAACTTCCCCTCTaGCTCCCAGCGTGTGATGGG +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQCQLPL*LPACDG
Trigger: CCCATCACACGCTGGGAGGCAGAGGGGAAGTTGGCA...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR GCA 90 bp TATGTAACTGAAAAATCTCTCTCTCTCTTACACACACGAACACACACACACCTCAAGCGGCACAGGTACTaGAGCGAGCGCACCTGCATG +
Preference number: 4 (lower is better)
Translates to: YVTEKSLSLLHTRTHTHLKRHRY*SERTCM
Trigger: CATGCAGGTGCGCTCGCTGCAGTACCTGTGCCGCTT...GAGGTGTGTGTGTGTTCGTGTGTGTAAGAGAGAGAGAGATTTTTCAGTTACATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR CCA 90 bp CACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTTTTGTAACAATGCAGCGGCCAGGGCGTaGGGCTATAATGGTGGCTTC +
Preference number: 4 (lower is better)
Translates to: HEHTHTSQKPGLSYFCNNAAARA*GYNGGF
Trigger: GAAGCCACCATTATAGCCCCACGCCCTGGCCGCTGC...ATTGTTACAAAAGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR CCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAACTCAGGGCGCGGCTCTaGCTGCAGGTCTCGCAGCTC +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKLRARL*LQVSQL
Trigger: GAGCTGCGAGACCTGCAGCCAGAGCCGCGCCCTGAG...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR TCA 90 bp TCTCTTACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTGCAAGGGACTGGGGCTaGACCACCATGAACTCAGTT +
Preference number: 4 (lower is better)
Translates to: SLTHTNTHTPHKNQGYLTARDWG*TTMNSV
Trigger: AACTGAGTTCATGGTGGTTCAGCCCCAGTCCCTTGC...AGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGTAAGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR TCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAACTCGCATCTCCATCTTaGTGCACGTCTCCTCCGAGC +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQLASPS*CTSPPS
Trigger: GCTCGGAGGAGACGTGCATCAAGATGGAGATGCGAG...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR TCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAAGGCCCGAGAGGCCACTaGAGTTCCTTTGGATTGGGT +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQGPRGH*SSFGLG
Trigger: ACCCAATCCAAAGGAACTTCAGTGGCCTCTCGGGCC...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR TCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAAGCGAGCGCACCTGCATaGATCGTGACACTGGATTGG +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQASAPA*IVTLDW
Trigger: CCAATCCAGTGTCACGATTCATGCAGGTGCGCTCGC...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR GCA 90 bp CACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTTTTGTAACAATACGCAGTGCCGCCCTTaGCCTTGGTCTTCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: HEHTHTSQKPGLSYFCNNTQCRP*PWSSAW
Trigger: CCAAGCAGAAGACCAAGGGCAAGGGCGGCACTGCGT...ATTGTTACAAAAGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR TCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAAGCAAGGGACTGGGGCTaGACCACCATGAACTCAGTT +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQARDWG*TTMNSV
Trigger: AACTGAGTTCATGGTGGTTCAGCCCCAGTCCCTTGC...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR TCA 90 bp GTGTCATACAAAAGTCAGTATTTCCCATTGTTTCCCACTTCTGTCAGATGGATGAGGTCCTGGTCCACATaGCTGTCGTCTTCGGAGAAG +
Preference number: 4 (lower is better)
Translates to: VSYKSQYFPLFPTSVRWMRSWST*LSSSEK
Trigger: CTTCTCCGAAGACGACAGTCATGTGGACCAGGACCT...CATCCATCTGACAGAAGTGGGAAACAATGGGAAATACTGACTTTTGTATGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR TCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAAAGGTCCTGGTCCACATaGCTGTCGTCTTCGGAGAAG +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQRSWST*LSSSEK
Trigger: CTTCTCCGAAGACGACAGTCATGTGGACCAGGACCT...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR TCA 90 bp ACACACACACACACACAGAATGGCTTAGAGGTTATGTTTGTATCATCTAAGTTCGCGAGCGCACCTGCATaGATCGTGACACTGGATTGG +
Preference number: 4 (lower is better)
Translates to: THTHTQNGLEVMFVSSKFASAPA*IVTLDW
Trigger: CCAATCCAGTGTCACGATTCATGCAGGTGCGCTCGC...GAACTTAGATGATACAAACATAACCTCTAAGCCATTCTGTGTGTGTGTGTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR GCA 90 bp TCTCTTACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTACCGCCTCTTCAAAGTaGCCATCAGGCTCTCGCTTT +
Preference number: 4 (lower is better)
Translates to: SLTHTNTHTPHKNQGYLTTASSK*PSGSRF
Trigger: AAAGCGAGAGCCTGATGGGCACTTTGAAGAGGCGGT...AGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGTAAGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR GCA 90 bp GTGTCATACAAAAGTCAGTATTTCCCATTGTTTCCCACTTCTGTCAGATGGATGTGCAGCGAGCGCACCTaGATGAATCGTGACACTGGA +
Preference number: 4 (lower is better)
Translates to: VSYKSQYFPLFPTSVRWMCSERT*MNRDTG
Trigger: TCCAGTGTCACGATTCATGCAGGTGCGCTCGCTGCA...CATCCATCTGACAGAAGTGGGAAACAATGGGAAATACTGACTTTTGTATGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR CCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAAGCAGCGGCCAGGGCGTaGGGCTATAATGGTGGCTTC +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKAAARA*GYNGGF
Trigger: GAAGCCACCATTATAGCCCCACGCCCTGGCCGCTGC...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR CCA 90 bp TCTCTTACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTATCCACAAGGATCTCTaGGCCTACAACCAGGTCCTG +
Preference number: 4 (lower is better)
Translates to: SLTHTNTHTPHKNQGYLTIHKDL*AYNQVL
Trigger: CAGGACCTGGTTGTAGGCCCAGAGATCCTTGTGGAT...AGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGTAAGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR TCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAAGAGCACGCACATCCTTaGGCCCACCAGGAGCTGAAG +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKEHAHP*AHQELK
Trigger: CTTCAGCTCCTGGTGGGCTCAAGGATGTGCGTGCTC...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR GCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAAACCGCCTCTTCAAAGTaGCCATCAGGCTCTCGCTTT +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQTASSK*PSGSRF
Trigger: AAAGCGAGAGCCTGATGGGCACTTTGAAGAGGCGGT...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR GCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAATGCCAACTTCCCCTCTaGCTCCCAGCGTGTGATGGG +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKCQLPL*LPACDG
Trigger: CCCATCACACGCTGGGAGGCAGAGGGGAAGTTGGCA...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR GCA 90 bp ACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTTTTGTAACCATCTGGCACATTTaGCAACTTCCCCTCTGCCTC +
Preference number: 4 (lower is better)
Translates to: THTNTHTPHKNQGYLTFVTIWHI*QLPLCL
Trigger: GAGGCAGAGGGGAAGTTGGCAAATGTGCCAGATGGT...TACAAAAGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR GCA 90 bp CACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTTTTGTAACAATTGCAGCGAGCGCACCTaGATGAATCGTGACACTGGA +
Preference number: 4 (lower is better)
Translates to: HEHTHTSQKPGLSYFCNNCSERT*MNRDTG
Trigger: TCCAGTGTCACGATTCATGCAGGTGCGCTCGCTGCA...ATTGTTACAAAAGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR GCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAAAAGCGGCACAGGTACTaGAGCGAGCGCACCTGCATG +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKKRHRY*SERTCM
Trigger: CATGCAGGTGCGCTCGCTGCAGTACCTGTGCCGCTT...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR CCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAAATCCACAAGGATCTCTaGGCCTACAACCAGGTCCTG +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQIHKDL*AYNQVL
Trigger: CAGGACCTGGTTGTAGGCCCAGAGATCCTTGTGGAT...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR TCA 90 bp GTATTAATTTCATGGCATATCAACTATGAGACTTCCTTACCCCAACATGACAATCTCGCATCTCCATCTTaGTGCACGTCTCCTCCGAGC +
Preference number: 4 (lower is better)
Translates to: VLISWHINYETSLPQHDNLASPS*CTSPPS
Trigger: GCTCGGAGGAGACGTGCATCAAGATGGAGATGCGAG...ATTGTCATGTTGGGGTAAGGAAGTCTCATAGTTGATATGCCATGAAATTAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR TCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAAGCGAGCGCACCTGCATaGATCGTGACACTGGATTGG +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKASAPA*IVTLDW
Trigger: CCAATCCAGTGTCACGATTCATGCAGGTGCGCTCGC...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR TCA 90 bp TCTCTTACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTTCTATTCTGGTGTACTaGCGGATAACAAAGCGGCAC +
Preference number: 4 (lower is better)
Translates to: SLTHTNTHTPHKNQGYLTSILVY*RITKRH
Trigger: GTGCCGCTTTGTTATCCGTCAGTACACCAGAATAGA...AGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGTAAGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR GCA 90 bp TCTCTTACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTATACCACCCCTGTTTTaGAAGCTTCTTCAGCTCCTC +
Preference number: 4 (lower is better)
Translates to: SLTHTNTHTPHKNQGYLTIPPLF*KLLQLL
Trigger: GAGGAGCTGAAGAAGCTTGCAAAACAGGGGTGGTAT...AGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGTAAGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR TCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAAAGGTCCTGGTCCACATaGCTGTCGTCTTCGGAGAAG +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKRSWST*LSSSEK
Trigger: CTTCTCCGAAGACGACAGTCATGTGGACCAGGACCT...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR TCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAATCTATTCTGGTGTACTaGCGGATAACAAAGCGGCAC +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQSILVY*RITKRH
Trigger: GTGCCGCTTTGTTATCCGTCAGTACACCAGAATAGA...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR GCA 90 bp AAGCCCCAAATTAACCCTCAGCCTCCAGCATTTCTGGTGGTGGAGTATACAGTAGAGTCCCTGATTGAATaGTCGATTAAGTCAACTATA +
Preference number: 4 (lower is better)
Translates to: KPQINPQPPAFLVVEYTVESLIE*SIKSTI
Trigger: TATAGTTGACTTAATCGAGCATTCAATCAGGGACTC...TACTGTATACTCCACCACCAGAAATGCTGGAGGCTGAGGGTTAATTTGGGGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR GCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAATGCAGCGAGCGCACCTaGATGAATCGTGACACTGGA +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKCSERT*MNRDTG
Trigger: TCCAGTGTCACGATTCATGCAGGTGCGCTCGCTGCA...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR GCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAAACCATCTGGCACATTTaGCAACTTCCCCTCTGCCTC +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKTIWHI*QLPLCL
Trigger: GAGGCAGAGGGGAAGTTGGCAAATGTGCCAGATGGT...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR CCA 90 bp GTGTCATACAAAAGTCAGTATTTCCCATTGTTTCCCACTTCTGTCAGATGGATGTCAGGCTCTCGCTTTTaGATCTGTTCTTCCCTTTCT +
Preference number: 4 (lower is better)
Translates to: VSYKSQYFPLFPTSVRWMSGSRF*ICSSLS
Trigger: AGAAAGGGAAGAACAGATCCAAAAGCGAGAGCCTGA...CATCCATCTGACAGAAGTGGGAAACAATGGGAAATACTGACTTTTGTATGACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR CCA 90 bp ACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTTTTGTATCAGGCTCTCGCTTTTaGATCTGTTCTTCCCTTTCT +
Preference number: 4 (lower is better)
Translates to: THTNTHTPHKNQGYLTFVSGSRF*ICSSLS
Trigger: AGAAAGGGAAGAACAGATCCAAAAGCGAGAGCCTGA...TACAAAAGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR TCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAATCTATTCTGGTGTACTaGCGGATAACAAAGCGGCAC +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKSILVY*RITKRH
Trigger: GTGCCGCTTTGTTATCCGTCAGTACACCAGAATAGA...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR GCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAAATACCACCCCTGTTTTaGAAGCTTCTTCAGCTCCTC +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKIPPLF*KLLQLL
Trigger: GAGGAGCTGAAGAAGCTTGCAAAACAGGGGTGGTAT...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR GCA 90 bp TCTCTTACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTGAGTCCCTGATTGAATaGTCGATTAAGTCAACTATA +
Preference number: 4 (lower is better)
Translates to: SLTHTNTHTPHKNQGYLTESLIE*SIKSTI
Trigger: TATAGTTGACTTAATCGAGCATTCAATCAGGGACTC...AGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGTAAGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR TCA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAAAGGCAATCGAGATCTTaGATAACAAAATGCTCCATT +
Preference number: 4 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQRQSRS*ITKCSI
Trigger: AATGGAGCATTTTGTTATTCAAGATCTCGATTGCCT...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR TCA 90 bp TATGTAACTGAAAAATCTCTCTCTCTCTTACACACACGAACACACACACACCTCAGGCAATCGAGATCTTaGATAACAAAATGCTCCATT +
Preference number: 4 (lower is better)
Translates to: YVTEKSLSLLHTRTHTHLRQSRS*ITKCSI
Trigger: AATGGAGCATTTTGTTATTCAAGATCTCGATTGCCT...GAGGTGTGTGTGTGTTCGTGTGTGTAAGAGAGAGAGAGATTTTTCAGTTACATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR CCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAATCAGGCTCTCGCTTTTaGATCTGTTCTTCCCTTTCT +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKSGSRF*ICSSLS
Trigger: AGAAAGGGAAGAACAGATCCAAAAGCGAGAGCCTGA...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR GCA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAAGAGTCCCTGATTGAATaGTCGATTAAGTCAACTATA +
Preference number: 4 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKESLIE*SIKSTI
Trigger: TATAGTTGACTTAATCGAGCATTCAATCAGGGACTC...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
3UTR CAA 72 bp CGCTCTGTGTGGCTGGTTTCCTTAAATTTTTCAGTTTaGTGGTTATTTACTGTGATACGTGACTTTCTAATT +
Preference number: 4 (lower is better)
Translates to: RSVWLVSLNFSV*WLFTVIRDFLI
Trigger: AATTAGAAAGTCACGTATCACAGTAAATAACCACAAAACTGAAAAATTTAAGGAAACCAGCCACACAGAGCG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR CAA 72 bp GTGTTTCATTTCCTTAATGCTAACGAGTTAGCCTATTaGGCACATCATTTTATTCAACAGAAAACTGTCGCT +
Preference number: 4 (lower is better)
Translates to: VFHFLNANELAY*AHHFIQQKTVA
Trigger: AGCGACAGTTTTCTGTTGAATAAAATGATGTGCCAAATAGGCTAACTCGTTAGCATTAAGGAAATGAAACAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
3UTR CAA 72 bp TTAGGAGATTCTAAGACTCCATCTCATCCTTTCTGGTaGGAGAACTTGCATCACTTTTCAAAAACAAATTCA +
Preference number: 4 (lower is better)
Translates to: LGDSKTPSHPFW*ENLHHFSKTNS
Trigger: TGAATTTGTTTTTGAAAAGTGATGCAAGTTCTCCAACCAGAAAGGATGAGATGGAGTCTTAGAATCTCCTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS GCA 90 bp CCGGGTGAGCTGGGGCTGCAGCGGGACTCAGGGCGCGGCTCTGGCTaGAGGTCTCGCAGCTCCCTGGGCTGTAGCTCCCGCAGATCCTTG +
Preference number: 5 (lower is better)
Translates to: PGELGLQRDSGRGSG*RSRSSLGCSSRRSL
Trigger: CAAGGATCTGCGGGAGCTACAGCCCAGGGAGCTGCGAGACCTGCAGCCAGAGCCGCGCCCTGAGTCCCGCTGCAGCCCCAGCTCACCCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS GCA 90 bp CGTGTTCCTCCAGGTGGAGGCTCAGGTCCCCGGGTGAGCTGGGGCTaGAGCGGGACTCAGGGCGCGGCTCTGGCTGCAGGTCTCGCAGCT +
Preference number: 5 (lower is better)
Translates to: RVPPGGGSGPRVSWG*SGTQGAALAAGLAA
Trigger: AGCTGCGAGACCTGCAGCCAGAGCCGCGCCCTGAGTCCCGCTGCAGCCCCAGCTCACCCGGGGACCTGAGCCTCCACCTGGAGGAACACG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS TCA 90 bp TACTACAGGCACGTGTTCCTCCAGGTGGAGGCTCAGGTCCCCGGGTaGGCTGGGGCTGCAGCGGGACTCAGGGCGCGGCTCTGGCTGCAG +
Preference number: 5 (lower is better)
Translates to: YYRHVFLQVEAQVPG*AGAAAGLRARLWLQ
Trigger: CTGCAGCCAGAGCCGCGCCCTGAGTCCCGCTGCAGCCCCAGCTCACCCGGGGACCTGAGCCTCCACCTGGAGGAACACGTGCCTGTAGTA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS GCA 90 bp GTGTCCTCATCTGTAGACGCAGTGCCGCCCTTGCCCTTGGTCTTCTaGTTGGCGGACAACCGCCTCTTCAAAGTGCCCATCAGGCTCTCG +
Preference number: 5 (lower is better)
Translates to: VSSSVDAVPPLPLVF*LADNRLFKVPIRLS
Trigger: CGAGAGCCTGATGGGCACTTTGAAGAGGCGGTTGTCCGCCAAGCAGAAGACCAAGGGCAAGGGCGGCACTGCGTCTACAGATGAGGACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS GCA 90 bp CCTTGCCCTTGGTCTTCTGCTTGGCGGACAACCGCCTCTTCAAAGTaGCCATCAGGCTCTCGCTTTTGGATCTGTTCTTCCCTTTCTCAT +
Preference number: 5 (lower is better)
Translates to: PCPWSSAWRTTASSK*PSGSRFWICSSLSH
Trigger: ATGAGAAAGGGAAGAACAGATCCAAAAGCGAGAGCCTGATGGGCACTTTGAAGAGGCGGTTGTCCGCCAAGCAGAAGACCAAGGGCAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS GCA 90 bp TCAGGCTCTCGCTTTTGGATCTGTTCTTCCCTTTCTCATCCTCGCTaGCAATGTCACAACTGGCCATGTCTTTGCCATAACAGCTCCCGA +
Preference number: 5 (lower is better)
Translates to: SGSRFWICSSLSHPR*QCHNWPCLCHNSSR
Trigger: TCGGGAGCTGTTATGGCAAAGACATGGCCAGTTGTGACATTGGCAGCGAGGATGAGAAAGGGAAGAACAGATCCAAAAGCGAGAGCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS-3UTR CAA 90 bp TCTCTTACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTGGAGCACGCACATCCTaGAGCCCACCAGGAGCTGAA +
Preference number: 5 (lower is better)
Translates to: SLTHTNTHTPHKNQGYLTGARTS*SPPGAE
Trigger: TTCAGCTCCTGGTGGGCTCAAGGATGTGCGTGCTCC...AGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGTAAGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS GCA 90 bp TCCCTTTCTCATCCTCGCTGCCAATGTCACAACTGGCCATGTCTTTaGCATAACAGCTCCCGAATAAAGAGTCATCTTTCACGAAGTCAC +
Preference number: 5 (lower is better)
Translates to: SLSHPRCQCHNWPCL*HNSSRIKSHLSRSH
Trigger: GTGACTTCGTGAAAGATGACTCTTTATTCGGGAGCTGTTATGGCAAAGACATGGCCAGTTGTGACATTGGCAGCGAGGATGAGAAAGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
ENSMUST00000236108.2
CDS CCA 90 bp TGGATCTGTTCTTCCCTTTCTCATCCTCGCTGCCAATGTCACAACTaGCCATGTCTTTGCCATAACAGCTCCCGAATAAAGAGTCATCTT +
Preference number: 5 (lower is better)
Translates to: WICSSLSHPRCQCHN*PCLCHNSSRIKSHL
Trigger: AAGATGACTCTTTATTCGGGAGCTGTTATGGCAAAGACATGGCCAGTTGTGACATTGGCAGCGAGGATGAGAAAGGGAAGAACAGATCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS-3UTR CAA 90 bp TCTCTTACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTAACCATCTGGCACATTaGCCAACTTCCCCTCTGCCT +
Preference number: 5 (lower is better)
Translates to: SLTHTNTHTPHKNQGYLTNHLAH*PTSPLP
Trigger: AGGCAGAGGGGAAGTTGGCAAATGTGCCAGATGGTT...AGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGTAAGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR CAA 90 bp GTATTAATTTCATGGCATATCAACTATGAGACTTCCTTACCCCAACATGACAATGGAGCACGCACATCCTaGAGCCCACCAGGAGCTGAA +
Preference number: 5 (lower is better)
Translates to: VLISWHINYETSLPQHDNGARTS*SPPGAE
Trigger: TTCAGCTCCTGGTGGGCTCAAGGATGTGCGTGCTCC...ATTGTCATGTTGGGGTAAGGAAGTCTCATAGTTGATATGCCATGAAATTAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR CAA 90 bp ACACACACACACACACAGAATGGCTTAGAGGTTATGTTTGTATCATCTAAGTTCACTCGCATCTCCATCTaGATGCACGTCTCCTCCGAG +
Preference number: 5 (lower is better)
Translates to: THTHTQNGLEVMFVSSKFTRISI*MHVSSE
Trigger: CTCGGAGGAGACGTGCATCAAGATGGAGATGCGAGT...GAACTTAGATGATACAAACATAACCTCTAAGCCATTCTGTGTGTGTGTGTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR CAA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAAAACCATCTGGCACATTaGCCAACTTCCCCTCTGCCT +
Preference number: 5 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQNHLAH*PTSPLP
Trigger: AGGCAGAGGGGAAGTTGGCAAATGTGCCAGATGGTT...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS TCA 90 bp AATAAAGAGTCATCTTTCACGAAGTCACCAGCAAGGGACTGGGGCTaGACCACCATGAACTCAGTTTCGTCTTTGCTTTTACTCAGGTTA +
Preference number: 5 (lower is better)
Translates to: NKESSFTKSPARDWG*TTMNSVSSLLLLRL
Trigger: TAACCTGAGTAAAAGCAAAGACGAAACTGAGTTCATGGTGGTTCAGCCCCAGTCCCTTGCTGGTGACTTCGTGAAAGATGACTCTTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
ENSMUST00000236108.2
CDS-3UTR CAA 90 bp TCTCTTACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTATCAGGCTCTCGCTTTaGGATCTGTTCTTCCCTTTC +
Preference number: 5 (lower is better)
Translates to: SLTHTNTHTPHKNQGYLTIRLSL*DLFFPF
Trigger: GAAAGGGAAGAACAGATCCAAAAGCGAGAGCCTGAT...AGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGTAAGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR CAA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAACATGGGGCCACTACTTaGCACCGAGTCATAAACTCT +
Preference number: 5 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQHGATT*HRVINS
Trigger: AGAGTTTATGACTCGGTGCAAAGTAGTGGCCCCATG...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR CAA 90 bp ACACACACACACACACAGAATGGCTTAGAGGTTATGTTTGTATCATCTAAGTTCAACCATCTGGCACATTaGCCAACTTCCCCTCTGCCT +
Preference number: 5 (lower is better)
Translates to: THTHTQNGLEVMFVSSKFNHLAH*PTSPLP
Trigger: AGGCAGAGGGGAAGTTGGCAAATGTGCCAGATGGTT...GAACTTAGATGATACAAACATAACCTCTAAGCCATTCTGTGTGTGTGTGTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR CAA 90 bp TATGTAACTGAAAAATCTCTCTCTCTCTTACACACACGAACACACACACACCTCATCAGGCTCTCGCTTTaGGATCTGTTCTTCCCTTTC +
Preference number: 5 (lower is better)
Translates to: YVTEKSLSLLHTRTHTHLIRLSL*DLFFPF
Trigger: GAAAGGGAAGAACAGATCCAAAAGCGAGAGCCTGAT...GAGGTGTGTGTGTGTTCGTGTGTGTAAGAGAGAGAGAGATTTTTCAGTTACATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR CAA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAAATCAGGCTCTCGCTTTaGGATCTGTTCTTCCCTTTC +
Preference number: 5 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQIRLSL*DLFFPF
Trigger: GAAAGGGAAGAACAGATCCAAAAGCGAGAGCCTGAT...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR CAA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAAACTCGCATCTCCATCTaGATGCACGTCTCCTCCGAG +
Preference number: 5 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKTRISI*MHVSSE
Trigger: CTCGGAGGAGACGTGCATCAAGATGGAGATGCGAGT...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR CAA 90 bp GTGTCATACAAAAGTCAGTATTTCCCATTGTTTCCCACTTCTGTCAGATGGATGAATACCACCCCTGTTTaGCAAGCTTCTTCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: VSYKSQYFPLFPTSVRWMNTTPV*QASSAP
Trigger: AGGAGCTGAAGAAGCTTGCAAAACAGGGGTGGTATT...CATCCATCTGACAGAAGTGGGAAACAATGGGAAATACTGACTTTTGTATGACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR CAA 90 bp CGATGTAAGTCTGTAAACTGTACTCAAGTCTTGTTTCTGAACCCCAAAGTGCAAAATACCACCCCTGTTTaGCAAGCTTCTTCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: RCKSVNCTQVLFLNPKVQNTTPV*QASSAP
Trigger: AGGAGCTGAAGAAGCTTGCAAAACAGGGGTGGTATT...TTGCACTTTGGGGTTCAGAAACAAGACTTGAGTACAGTTTACAGACTTACATCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR CAA 90 bp GTATTAATTTCATGGCATATCAACTATGAGACTTCCTTACCCCAACATGACAATCATGGGGCCACTACTTaGCACCGAGTCATAAACTCT +
Preference number: 5 (lower is better)
Translates to: VLISWHINYETSLPQHDNHGATT*HRVINS
Trigger: AGAGTTTATGACTCGGTGCAAAGTAGTGGCCCCATG...ATTGTCATGTTGGGGTAAGGAAGTCTCATAGTTGATATGCCATGAAATTAATAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR CAA 90 bp TCTCTTACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTCAGGCAATCGAGATCTaGAATAACAAAATGCTCCAT +
Preference number: 5 (lower is better)
Translates to: SLTHTNTHTPHKNQGYLTQAIEI*NNKMLH
Trigger: ATGGAGCATTTTGTTATTCAAGATCTCGATTGCCTG...AGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGTAAGAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR CAA 90 bp ACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTTTTGTAGTGCCAATCAACAAATaGTTCACTGATGAATCCACA +
Preference number: 5 (lower is better)
Translates to: THTNTHTPHKNQGYLTFVVPINK*FTDEST
Trigger: TGTGGATTCATCAGTGAACAATTTGTTGATTGGCAC...TACAAAAGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR CAA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAAAATACCACCCCTGTTTaGCAAGCTTCTTCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKNTTPV*QASSAP
Trigger: AGGAGCTGAAGAAGCTTGCAAAACAGGGGTGGTATT...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
40% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR CAA 90 bp ACACACACGAACACACACACACCTCACAAAAACCAGGGTTATCTTACTTTTGTACAGGCAATCGAGATCTaGAATAACAAAATGCTCCAT +
Preference number: 5 (lower is better)
Translates to: THTNTHTPHKNQGYLTFVQAIEI*NNKMLH
Trigger: ATGGAGCATTTTGTTATTCAAGATCTCGATTGCCTG...TACAAAAGTAAGATAACCCTGGTTTTTGTGAGGTGTGTGTGTGTTCGTGTGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
CDS-3UTR CAA 90 bp GTATTAATTTCATGGCATATCAACTATGAGACTTCCTTACCCCAACATGACAATGTGCCAATCAACAAATaGTTCACTGATGAATCCACA +
Preference number: 5 (lower is better)
Translates to: VLISWHINYETSLPQHDNVPINK*FTDEST
Trigger: TGTGGATTCATCAGTGAACAATTTGTTGATTGGCAC...ATTGTCATGTTGGGGTAAGGAAGTCTCATAGTTGATATGCCATGAAATTAATAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070116.12
CDS-3UTR CAA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAAGTGCCAATCAACAAATaGTTCACTGATGAATCCACA +
Preference number: 5 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKVPINK*FTDEST
Trigger: TGTGGATTCATCAGTGAACAATTTGTTGATTGGCAC...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS-3UTR CAA 90 bp GGCAACAGAACAATTCAACTTCTCCCAACCAAAACAATTATCACATCCTTAAAACAGGCAATCGAGATCTaGAATAACAAAATGCTCCAT +
Preference number: 5 (lower is better)
Translates to: GNRTIQLLPTKTIITSLKQAIEI*NNKMLH
Trigger: ATGGAGCATTTTGTTATTCAAGATCTCGATTGCCTG...TTTTAAGGATGTGATAATTGTTTTGGTTGGGAGAAGTTGAATTGTTCTGTTGCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS GCA 72 bp CTGGGGCTGCAGCGGGACTCAGGGCGCGGCTCTGGCTaGAGGTCTCGCAGCTCCCTGGGCTGTAGCTCCCGC +
Preference number: 6 (lower is better)
Translates to: LGLQRDSGRGSG*RSRSSLGCSSR
Trigger: GCGGGAGCTACAGCCCAGGGAGCTGCGAGACCTGCAGCCAGAGCCGCGCCCTGAGTCCCGCTGCAGCCCCAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS TCA 72 bp CACGTGTTCCTCCAGGTGGAGGCTCAGGTCCCCGGGTaGGCTGGGGCTGCAGCGGGACTCAGGGCGCGGCTC +
Preference number: 6 (lower is better)
Translates to: HVFLQVEAQVPG*AGAAAGLRARL
Trigger: GAGCCGCGCCCTGAGTCCCGCTGCAGCCCCAGCTCACCCGGGGACCTGAGCCTCCACCTGGAGGAACACGTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS CCA 72 bp GTTCCTCCAGGTGGAGGCTCAGGTCCCCGGGTGAGCTaGGGCTGCAGCGGGACTCAGGGCGCGGCTCTGGCT +
Preference number: 6 (lower is better)
Translates to: VPPGGGSGPRVS*GCSGTQGAALA
Trigger: AGCCAGAGCCGCGCCCTGAGTCCCGCTGCAGCCCCAGCTCACCCGGGGACCTGAGCCTCCACCTGGAGGAAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS CCA 72 bp CAGGGCGCGGCTCTGGCTGCAGGTCTCGCAGCTCCCTaGGCTGTAGCTCCCGCAGATCCTTGCGCACACCGT +
Preference number: 6 (lower is better)
Translates to: QGAALAAGLAAP*AVAPADPCAHR
Trigger: ACGGTGTGCGCAAGGATCTGCGGGAGCTACAGCCCAGGGAGCTGCGAGACCTGCAGCCAGAGCCGCGCCCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS CAA 72 bp TCTCGCAGCTCCCTGGGCTGTAGCTCCCGCAGATCCTaGCGCACACCGTTGACTGGTCCTGGGCTGGCAGCA +
Preference number: 6 (lower is better)
Translates to: SRSSLGCSSRRS*RTPLTGPGLAA
Trigger: TGCTGCCAGCCCAGGACCAGTCAACGGTGTGCGCAAGGATCTGCGGGAGCTACAGCCCAGGGAGCTGCGAGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS CAA 72 bp CTGGGCTGTAGCTCCCGCAGATCCTTGCGCACACCGTaGACTGGTCCTGGGCTGGCAGCATGCACCAGTGCT +
Preference number: 6 (lower is better)
Translates to: LGCSSRRSLRTP*TGPGLAACTSA
Trigger: AGCACTGGTGCATGCTGCCAGCCCAGGACCAGTCAACGGTGTGCGCAAGGATCTGCGGGAGCTACAGCCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS TCA 72 bp ATGTGGAGCGGATGGGCCGCGGAGCACGCACATCCTTaGGCCCACCAGGAGCTGAAGCTGAGGAGAAGGTGT +
Preference number: 6 (lower is better)
Translates to: MWSGWAAEHAHP*AHQELKLRRRC
Trigger: ACACCTTCTCCTCAGCTTCAGCTCCTGGTGGGCTCAAGGATGTGCGTGCTCCGCGGCCCATCCGCTCCACAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS CAA 72 bp GAGAAGGTGTCCTCATCTGTAGACGCAGTGCCGCCCTaGCCCTTGGTCTTCTGCTTGGCGGACAACCGCCTC +
Preference number: 6 (lower is better)
Translates to: EKVSSSVDAVPP*PLVFCLADNRL
Trigger: GAGGCGGTTGTCCGCCAAGCAGAAGACCAAGGGCAAGGGCGGCACTGCGTCTACAGATGAGGACACCTTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS TCA 72 bp CAGCATGCACCAGTGCTTTCACTCGCATCTCCATCTTaGTGCACGTCTCCTCCGAGCTGGTGGGACGCAGCG +
Preference number: 6 (lower is better)
Translates to: QHAPVLSLASPS*CTSPPSWWDAA
Trigger: CGCTGCGTCCCACCAGCTCGGAGGAGACGTGCATCAAGATGGAGATGCGAGTGAAAGCACTGGTGCATGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS GCA 72 bp ACACCTCCATGGGAGAAGACGTATCCAGGCAGCAGCTaGGCGGCCCTTCAAGAGGGCACATCCCGTCATCTA +
Preference number: 6 (lower is better)
Translates to: TPPWEKTYPGSS*AALQEGTSRHL
Trigger: TAGATGACGGGATGTGCCCTCTTGAAGGGCCGCGCAGCTGCTGCCTGGATACGTCTTCTCCCATGGAGGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS CAA 72 bp GCAGCATGCACCAGTGCTTTCACTCGCATCTCCATCTaGATGCACGTCTCCTCCGAGCTGGTGGGACGCAGC +
Preference number: 6 (lower is better)
Translates to: AACTSAFTRISI*MHVSSELVGRS
Trigger: GCTGCGTCCCACCAGCTCGGAGGAGACGTGCATCAAGATGGAGATGCGAGTGAAAGCACTGGTGCATGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS CAA 90 bp TCCTCATCTGTAGACGCAGTGCCGCCCTTGCCCTTGGTCTTCTGCTaGGCGGACAACCGCCTCTTCAAAGTGCCCATCAGGCTCTCGCTT +
Preference number: 6 (lower is better)
Translates to: SSSVDAVPPLPLVFC*ADNRLFKVPIRLSL
Trigger: AAGCGAGAGCCTGATGGGCACTTTGAAGAGGCGGTTGTCCGCCAAGCAGAAGACCAAGGGCAAGGGCGGCACTGCGTCTACAGATGAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS GCA 72 bp TTGCGCACACCGTTGACTGGTCCTGGGCTGGCAGCATaGACCAGTGCTTTCACTCGCATCTCCATCTTGATG +
Preference number: 6 (lower is better)
Translates to: LRTPLTGPGLAA*TSAFTRISILM
Trigger: CATCAAGATGGAGATGCGAGTGAAAGCACTGGTGCATGCTGCCAGCCCAGGACCAGTCAACGGTGTGCGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS TCA 72 bp GCAACCCCAGGCGCAGAGTTGGGATCGAAATTCAAATaGCAGCGAACACTTTCGGCCATGTGCAAGTCTGGG +
Preference number: 6 (lower is better)
Translates to: ATPGAELGSKFK*QRTLSAMCKSG
Trigger: CCCAGACTTGCACATGGCCGAAAGTGTTCGCTGTCATTTGAATTTCGATCCCAACTCTGCGCCTGGGGTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
CDS GCA 72 bp TGGTCTTCTGCTTGGCGGACAACCGCCTCTTCAAAGTaGCCATCAGGCTCTCGCTTTTGGATCTGTTCTTCC +
Preference number: 6 (lower is better)
Translates to: WSSAWRTTASSK*PSGSRFWICSS
Trigger: GGAAGAACAGATCCAAAAGCGAGAGCCTGATGGGCACTTTGAAGAGGCGGTTGTCCGCCAAGCAGAAGACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS CAA 90 bp TTGGCGGACAACCGCCTCTTCAAAGTGCCCATCAGGCTCTCGCTTTaGGATCTGTTCTTCCCTTTCTCATCCTCGCTGCCAATGTCACAA +
Preference number: 6 (lower is better)
Translates to: LADNRLFKVPIRLSL*DLFFPFSSSLPMSQ
Trigger: TTGTGACATTGGCAGCGAGGATGAGAAAGGGAAGAACAGATCCAAAAGCGAGAGCCTGATGGGCACTTTGAAGAGGCGGTTGTCCGCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS GCA 72 bp CGCTTTTGGATCTGTTCTTCCCTTTCTCATCCTCGCTaGCAATGTCACAACTGGCCATGTCTTTGCCATAAC +
Preference number: 6 (lower is better)
Translates to: RFWICSSLSHPR*QCHNWPCLCHN
Trigger: GTTATGGCAAAGACATGGCCAGTTGTGACATTGGCAGCGAGGATGAGAAAGGGAAGAACAGATCCAAAAGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
CDS CCA 72 bp TCTTCCCTTTCTCATCCTCGCTGCCAATGTCACAACTaGCCATGTCTTTGCCATAACAGCTCCCGAATAAAG +
Preference number: 6 (lower is better)
Translates to: SSLSHPRCQCHN*PCLCHNSSRIK
Trigger: CTTTATTCGGGAGCTGTTATGGCAAAGACATGGCCAGTTGTGACATTGGCAGCGAGGATGAGAAAGGGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
ENSMUST00000236108.2
CDS TCA 72 bp TCATCTTTCACGAAGTCACCAGCAAGGGACTGGGGCTaGACCACCATGAACTCAGTTTCGTCTTTGCTTTTA +
Preference number: 6 (lower is better)
Translates to: SSFTKSPARDWG*TTMNSVSSLLL
Trigger: TAAAAGCAAAGACGAAACTGAGTTCATGGTGGTTCAGCCCCAGTCCCTTGCTGGTGACTTCGTGAAAGATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000070116.12
ENSMUST00000123826.2
ENSMUST00000125362.8
ENSMUST00000145120.3
ENSMUST00000236108.2