Pregenerated sensors for SOCS5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037104Ensembl transcript IDs: ENSMUST00000041369.8, ENSMUST00000234803.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCCCTGGCAATAGCCATGGGACAGAAAGCAACCTCCTGCAGCAGCTaGCATGAGGGCCGAGGAGCACCCGGCAGCAGTTACAGAGCACGG | + |
|
Preference number: 1 (lower is better) Translates to: ALAIAMGQKATSCSS*HEGRGAPGSSYRAR Trigger: CCGTGCTCTGTAACTGCTGCCGGGTGCTCCTCGGCCCTCATGCCAGCTGCTGCAGGAGGTTGCTTTCTGTCCCATGGCTATTGCCAGGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR CCA 90 bp | CCAACTGCATGCTCTCAGGTCACCGTGCTCATCCGAAATGCACACTaGGGCTTTTACCCAACTCCACCACTGAGCTGGGAGTCTCAGGGT | + |
|
Preference number: 1 (lower is better) Translates to: PTACSQVTVLIRNAH*GFYPTPPLSWESQG Trigger: ACCCTGAGACTCCCAGCTCAGTGGTGGAGTTGGGTAAAAGCCCCAGTGTGCATTTCGGATGAGCACGGTGACCTGAGAGCATGCAGTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR GCA 90 bp | GGAAACTCCAACTGCATGCTCTCAGGTCACCGTGCTCATCCGAAATaGACACTGGGGCTTTTACCCAACTCCACCACTGAGCTGGGAGTC | + |
|
Preference number: 1 (lower is better) Translates to: GNSNCMLSGHRAHPK*TLGLLPNSTTELGV Trigger: GACTCCCAGCTCAGTGGTGGAGTTGGGTAAAAGCCCCAGTGTGCATTTCGGATGAGCACGGTGACCTGAGAGCATGCAGTTGGAGTTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR TCA 90 bp | ACCTGGTTTACTTTAGAGCCTCCTTCTCTGAGGAGAAAAGGAGGCTaGCTACAAGCCACATTAACAGTGCACAATGCCCTGTGGCTGGAA | + |
|
Preference number: 1 (lower is better) Translates to: TWFTLEPPSLRRKGG*LQATLTVHNALWLE Trigger: TTCCAGCCACAGGGCATTGTGCACTGTTAATGTGGCTTGTAGTCAGCCTCCTTTTCTCCTCAGAGAAGGAGGCTCTAAAGTAAACCAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR CCA 90 bp | TCTTCACAGCATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATaGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGGTACACTGTA | + |
|
Preference number: 1 (lower is better) Translates to: SSQHRLIIVFLQLSA*TYLSSRGSSSRYTV Trigger: TACAGTGTACCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATGCTGTGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR CCA 90 bp | TTCCTCCAGCTCTCAGCATGGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGGACCTCCTGCAGCAGCTaGCATGAGGGCCGAGGAGCA | + |
|
Preference number: 2 (lower is better) Translates to: FLQLSAWTYLSSRGSSSRTSCSS*HEGRGA Trigger: TGCTCCTCGGCCCTCATGCCAGCTGCTGCAGGAGGT...CCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR GCA 90 bp | TTCCTCCAGCTCTCAGCATGGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGGCAGAAAGCAACCTCCTaGAGCAGCTGGCATGAGGGC | + |
|
Preference number: 2 (lower is better) Translates to: FLQLSAWTYLSSRGSSSRQKATS*SSWHEG Trigger: GCCCTCATGCCAGCTGCTGCAGGAGGTTGCTTTCTG...CCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR GCA 90 bp | GCCTCCTTCTCTGAGGAGAAAAGGAGGCTGACTACAAGCCACATTAACAGTGCAACTGCCTCCTATGGGTaGAGTCTGATGCACGGGAGG | + |
|
Preference number: 2 (lower is better) Translates to: ASFSEEKRRLTTSHINSATASYG*SLMHGR Trigger: CCTCCCGTGCATCAGACTGCACCCATAGGAGGCAGT...TGCACTGTTAATGTGGCTTGTAGTCAGCCTCCTTTTCTCCTCAGAGAAGGAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR GCA 90 bp | TTCCTCCAGCTCTCAGCATGGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGGCGTGCTCATCCGAAATaGACACTGGGGCTTTTACCC | + |
|
Preference number: 2 (lower is better) Translates to: FLQLSAWTYLSSRGSSSRRAHPK*TLGLLP Trigger: GGGTAAAAGCCCCAGTGTGCATTTCGGATGAGCACG...CCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR GCA 90 bp | TTCCTCCAGCTCTCAGCATGGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGGTCAGCCTCTCCCTACTaGGCAGAGAAATCACCAGCT | + |
|
Preference number: 2 (lower is better) Translates to: FLQLSAWTYLSSRGSSSRSASPY*AEKSPA Trigger: AGCTGGTGATTTCTCTGCGCAGTAGGGAGAGGCTGA...CCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR GCA 90 bp | GCCTCCTTCTCTGAGGAGAAAAGGAGGCTGACTACAAGCCACATTAACAGTGCACAAATGCCCCAGAGTTaGCTCCCTCAGTTGTCACAG | + |
|
Preference number: 2 (lower is better) Translates to: ASFSEEKRRLTTSHINSAQMPQS*LPQLSQ Trigger: CTGTGACAACTGAGGGAGGCAACTCTGGGGCATTTG...TGCACTGTTAATGTGGCTTGTAGTCAGCCTCCTTTTCTCCTCAGAGAAGGAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR CCA 90 bp | CAAGTTCTCTTCACAGCATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATGAGCTCCCATTCTGGGTaGGAAATCCTAGCAGCTGAC | + |
|
Preference number: 2 (lower is better) Translates to: QVLFTASPDHSLPPALSMSSHSG*EILAAD Trigger: GTCAGCTGCTAGGATTTCCCACCCAGAATGGGAGCT...CATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATGCTGTGAAGAGAACTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR CCA 90 bp | CAAGTTCTCTTCACAGCATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATGACTAAGCTCCCATTCTaGGTGGGAAATCCTAGCAGC | + |
|
Preference number: 2 (lower is better) Translates to: QVLFTASPDHSLPPALSMTKLPF*VGNPSS Trigger: GCTGCTAGGATTTCCCACCCAGAATGGGAGCTTAGT...CATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATGCTGTGAAGAGAACTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR CCA 90 bp | TTCCTCCAGCTCTCAGCATGGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGGCTGCACATGTCAACTTaGAGAAAAACACCCCACTGG | + |
|
Preference number: 2 (lower is better) Translates to: FLQLSAWTYLSSRGSSSRLHMST*RKTPHW Trigger: CCAGTGGGGTGTTTTTCTCCAAGTTGACATGTGCAG...CCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR TCA 90 bp | CAAGTTCTCTTCACAGCATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATGAGACAATGTGAGGACTaGCTGCACATGTCAACTTGG | + |
|
Preference number: 2 (lower is better) Translates to: QVLFTASPDHSLPPALSMRQCED*LHMSTW Trigger: CCAAGTTGACATGTGCAGTCAGTCCTCACATTGTCT...CATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATGCTGTGAAGAGAACTTG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR CCA 90 bp | CAAGTTCTCTTCACAGCATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATGGTGCACAATGCCCTGTaGCTGGAAAACTTGCATTTG | + |
|
Preference number: 2 (lower is better) Translates to: QVLFTASPDHSLPPALSMVHNAL*LENLHL Trigger: CAAATGCAAGTTTTCCAGCCACAGGGCATTGTGCAC...CATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATGCTGTGAAGAGAACTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR CCA 90 bp | TTCCTCCAGCTCTCAGCATGGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGGAGAAAAACACCCCACTaGAAACTCCAACTGCATGCT | + |
|
Preference number: 2 (lower is better) Translates to: FLQLSAWTYLSSRGSSSRRKTPH*KLQLHA Trigger: AGCATGCAGTTGGAGTTTCCAGTGGGGTGTTTTTCT...CCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR TCA 90 bp | CAAGTTCTCTTCACAGCATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATGGAAAGTAGGTTTGGATaGCGTTCTCAGACACTTTGG | + |
|
Preference number: 2 (lower is better) Translates to: QVLFTASPDHSLPPALSMESRFG*RSQTLW Trigger: CCAAAGTGTCTGAGAACGTCATCCAAACCTACTTTC...CATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATGCTGTGAAGAGAACTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR GCA 90 bp | CAAGTTCTCTTCACAGCATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATGAATGTGAGGACTGACTaGACATGTCAACTTGGAGAA | + |
|
Preference number: 2 (lower is better) Translates to: QVLFTASPDHSLPPALSMNVRTD*TCQLGE Trigger: TTCTCCAAGTTGACATGTGCAGTCAGTCCTCACATT...CATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATGCTGTGAAGAGAACTTG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR TCA 90 bp | CAAGTTCTCTTCACAGCATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATGCGTTCTGCATTGACATaGACAAGTCTTTGGTTAAAG | + |
|
Preference number: 2 (lower is better) Translates to: QVLFTASPDHSLPPALSMRSALT*TSLWLK Trigger: CTTTAACCAAAGACTTGTTCATGTCAATGCAGAACG...CATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATGCTGTGAAGAGAACTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR CCA 72 bp | TGCTCTCAGGTCACCGTGCTCATCCGAAATGCACACTaGGGCTTTTACCCAACTCCACCACTGAGCTGGGAG | + |
|
Preference number: 3 (lower is better) Translates to: CSQVTVLIRNAH*GFYPTPPLSWE Trigger: CTCCCAGCTCAGTGGTGGAGTTGGGTAAAAGCCCCAGTGTGCATTTCGGATGAGCACGGTGACCTGAGAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR CCA 72 bp | ATGGTCCCTAAACCACTAAGTGGAGCTGTGGCGTCCTaGTACACAGACTCCGTGTCACTGGTTTCTGGCGTG | + |
|
Preference number: 3 (lower is better) Translates to: MVPKPLSGAVAS*YTDSVSLVSGV Trigger: CACGCCAGAAACCAGTGACACGGAGTCTGTGTACCAGGACGCCACAGCTCCACTTAGTGGTTTAGGGACCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR GCA 72 bp | AACTGCATGCTCTCAGGTCACCGTGCTCATCCGAAATaGACACTGGGGCTTTTACCCAACTCCACCACTGAG | + |
|
Preference number: 3 (lower is better) Translates to: NCMLSGHRAHPK*TLGLLPNSTTE Trigger: CTCAGTGGTGGAGTTGGGTAAAAGCCCCAGTGTGCATTTCGGATGAGCACGGTGACCTGAGAGCATGCAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR GCA 72 bp | CTGCTAACGTTACCGCTGGTTTCAGCCTCTCCCTACTaGGCAGAGAAATCACCAGCTTCTCACTTCTCTGGG | + |
|
Preference number: 3 (lower is better) Translates to: LLTLPLVSASPY*AEKSPASHFSG Trigger: CCCAGAGAAGTGAGAAGCTGGTGATTTCTCTGCGCAGTAGGGAGAGGCTGAAACCAGCGGTAACGTTAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR CAA 90 bp | CAAGTTCTCTTCACAGCATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATGGCAAATGCCCCAGAGTaGCCTCCCTCAGTTGTCACA | + |
|
Preference number: 3 (lower is better) Translates to: QVLFTASPDHSLPPALSMANAPE*PPSVVT Trigger: TGTGACAACTGAGGGAGGCAACTCTGGGGCATTTGC...CATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATGCTGTGAAGAGAACTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR CAA 90 bp | TCTAGGAAAACCTGGTTTACTTTAGAGCCTCCTTCTCTGAGGAGAAAAGGAGGCAGTTGCCTCCCTCAGTaGTCACAGCCCACCGAACAC | + |
|
Preference number: 3 (lower is better) Translates to: SRKTWFTLEPPSLRRKGGSCLPQ*SQPTEH Trigger: GTGTTCGGTGGGCTGTGACAACTGAGGGAGGCAACT...GCCTCCTTTTCTCCTCAGAGAAGGAGGCTCTAAAGTAAACCAGGTTTTCCTAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR GCA 72 bp | TTGGAGAAAAACACCCCACTGGAAACTCCAACTGCATaGTCTCAGGTCACCGTGCTCATCCGAAATGCACAC | + |
|
Preference number: 3 (lower is better) Translates to: LEKNTPLETPTA*SQVTVLIRNAH Trigger: GTGTGCATTTCGGATGAGCACGGTGACCTGAGAGCATGCAGTTGGAGTTTCCAGTGGGGTGTTTTTCTCCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR CCA 72 bp | CATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATaGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGG | + |
|
Preference number: 3 (lower is better) Translates to: HRLIIVFLQLSA*TYLSSRGSSSR Trigger: CCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR TCA 72 bp | AACTTGGCATCGTCAACCAGTGGAGTTACTACTATCTaGTGTGTCTGGGCATCTCCTAGTCTCGCTGTCCTC | + |
|
Preference number: 3 (lower is better) Translates to: NLASSTSGVTTI*CVWASPSLAVL Trigger: GAGGACAGCGAGACTAGGAGATGCCCAGACACATCAGATAGTAGTAACTCCACTGGTTGACGATGCCAAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR TCA 72 bp | ACTTTAGAGCCTCCTTCTCTGAGGAGAAAAGGAGGCTaGCTACAAGCCACATTAACAGTGCACAATGCCCTG | + |
|
Preference number: 3 (lower is better) Translates to: TLEPPSLRRKGG*LQATLTVHNAL Trigger: CAGGGCATTGTGCACTGTTAATGTGGCTTGTAGTCAGCCTCCTTTTCTCCTCAGAGAAGGAGGCTCTAAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR CAA 90 bp | CAAGTTCTCTTCACAGCATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATGCACACAGGAATGGATTaGGCTACTGTAGTGCAAATG | + |
|
Preference number: 3 (lower is better) Translates to: QVLFTASPDHSLPPALSMHTGMD*ATVVQM Trigger: CATTTGCACTACAGTAGCCAAATCCATTCCTGTGTG...CATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATGCTGTGAAGAGAACTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR-3UTR CAA 90 bp | TTCCTCCAGCTCTCAGCATGGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGGCTGTGGCTGGAAAACTaGCATTTGTTTTCTCTAAAA | + |
|
Preference number: 3 (lower is better) Translates to: FLQLSAWTYLSSRGSSSRLWLEN*HLFSLK Trigger: TTTTAGAGAAAACAAATGCAAGTTTTCCAGCCACAG...CCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR CCA 72 bp | GGAGTCTCAGGGTTAAGAAAACTATCTAGGAAAACCTaGTTTACTTTAGAGCCTCCTTCTCTGAGGAGAAAA | + |
|
Preference number: 3 (lower is better) Translates to: GVSGLRKLSRKT*FTLEPPSLRRK Trigger: TTTTCTCCTCAGAGAAGGAGGCTCTAAAGTAAACCAGGTTTTCCTAGATAGTTTTCTTAACCCTGAGACTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR GCA 72 bp | ACTTCTCTGGGTCCTGCTGTAAACTATACACTAATTTaGAGTGACTACAGACACTGGTTCACAAAATGTGAT | + |
|
Preference number: 3 (lower is better) Translates to: TSLGPAVNYTLI*SDYRHWFTKCD Trigger: ATCACATTTTGTGAACCAGTGTCTGTAGTCACTGCAAATTAGTGTATAGTTTACAGCAGGACCCAGAGAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR GCA 90 bp | GTTGCCTCCCTCAGTTGTCACAGCCCACCGAACACCTGCAAGCCATCTTGCTGTCCCTGTCTGCTAACGTaGGCGTGGCTGTCCCCGGAC | + |
|
Preference number: 4 (lower is better) Translates to: VASLSCHSPPNTCKPSCCPCLLT*AWLSPD Trigger: GTCCGGGGACAGCCACGCGCACGTTAGCAGACAGGG...ACAGCAAGATGGCTTGCAGGTGTTCGGTGGGCTGTGACAACTGAGGGAGGCAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR GCA 90 bp | GTTGCCTCCCTCAGTTGTCACAGCCCACCGAACACCTGCAAGCCATCTTGCTGTAAGGGACTGCTCTCTTaGTGGGGAGCTGCCTCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: VASLSCHSPPNTCKPSCCKGLLS*WGAASP Trigger: GGGAGAGGCAGCTCCCCAGCAAGAGAGCAGTCCCTT...ACAGCAAGATGGCTTGCAGGTGTTCGGTGGGCTGTGACAACTGAGGGAGGCAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR GCA 90 bp | CAAGTTCTCTTCACAGCATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATGCCGGACACCTGGCGCTaGTTCTGCCTCCGTGACTGC | + |
|
Preference number: 4 (lower is better) Translates to: QVLFTASPDHSLPPALSMPDTWR*FCLRDC Trigger: GCAGTCACGGAGGCAGAAGCAGCGCCAGGTGTCCGG...CATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATGCTGTGAAGAGAACTTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR GCA 90 bp | TCTAGGAAAACCTGGTTTACTTTAGAGCCTCCTTCTCTGAGGAGAAAAGGAGGCGTGTCCTGGAGCCTCTaGCTCAGGGAGCGGCTCCCG | + |
|
Preference number: 4 (lower is better) Translates to: SRKTWFTLEPPSLRRKGGVSWSL*LRERLP Trigger: CGGGAGCCGCTCCCTGAGGCAGAGGCTCCAGGACAC...GCCTCCTTTTCTCCTCAGAGAAGGAGGCTCTAAAGTAAACCAGGTTTTCCTAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR CCA 90 bp | TTCCTCCAGCTCTCAGCATGGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGGAAACCCACCGTGTCCTaGAGCCTCTGCCTCAGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: FLQLSAWTYLSSRGSSSRKPTVS*SLCLRE Trigger: CTCCCTGAGGCAGAGGCTCCAGGACACGGTGGGTTT...CCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR CCA 90 bp | TCTAGGAAAACCTGGTTTACTTTAGAGCCTCCTTCTCTGAGGAGAAAAGGAGGCCTGTCCCCGGACACCTaGCGCTGCTTCTGCCTCCGT | + |
|
Preference number: 4 (lower is better) Translates to: SRKTWFTLEPPSLRRKGGLSPDT*RCFCLR Trigger: ACGGAGGCAGAAGCAGCGCCAGGTGTCCGGGGACAG...GCCTCCTTTTCTCCTCAGAGAAGGAGGCTCTAAAGTAAACCAGGTTTTCCTAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR GCA 90 bp | TTCCTCCAGCTCTCAGCATGGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGGCACTTGAGGGATCTCTaGGGCACAGTTTTGGTTCCG | + |
|
Preference number: 4 (lower is better) Translates to: FLQLSAWTYLSSRGSSSRHLRDL*GTVLVP Trigger: CGGAACCAAAACTGTGCCGCAGAGATCCCTCAAGTG...CCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR TCA 90 bp | TCTAGGAAAACCTGGTTTACTTTAGAGCCTCCTTCTCTGAGGAGAAAAGGAGGCGTGACAGTGGAGGAGTaGAACACGCAGGGGTCATGG | + |
|
Preference number: 4 (lower is better) Translates to: SRKTWFTLEPPSLRRKGGVTVEE*NTQGSW Trigger: CCATGACCCCTGCGTGTTTCACTCCTCCACTGTCAC...GCCTCCTTTTCTCCTCAGAGAAGGAGGCTCTAAAGTAAACCAGGTTTTCCTAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR CCA 90 bp | GTTGCCTCCCTCAGTTGTCACAGCCCACCGAACACCTGCAAGCCATCTTGCTGTTGGCTGAAGAGATTCTaGCATCTGTATTTTAAGTTG | + |
|
Preference number: 4 (lower is better) Translates to: VASLSCHSPPNTCKPSCCWLKRF*HLYFKL Trigger: CAACTTAAAATACAGATGCCAGAATCTCTTCAGCCA...ACAGCAAGATGGCTTGCAGGTGTTCGGTGGGCTGTGACAACTGAGGGAGGCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR GCA 90 bp | TCTAGGAAAACCTGGTTTACTTTAGAGCCTCCTTCTCTGAGGAGAAAAGGAGGCGCGCGGCAGATATACTaGAGGCTGAAAGGGAAAGTT | + |
|
Preference number: 4 (lower is better) Translates to: SRKTWFTLEPPSLRRKGGARQIY*RLKGKV Trigger: AACTTTCCCTTTCAGCCTGCAGTATATCTGCCGCGC...GCCTCCTTTTCTCCTCAGAGAAGGAGGCTCTAAAGTAAACCAGGTTTTCCTAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR CCA 90 bp | CAAGTTCTCTTCACAGCATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATGACTGCAGACATAGGGTaGTTGAATCCTCTTCTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: QVLFTASPDHSLPPALSMTADIG*LNPLLS Trigger: ACTCAGAAGAGGATTCAACCACCCTATGTCTGCAGT...CATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATGCTGTGAAGAGAACTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR TCA 90 bp | TTCCTCCAGCTCTCAGCATGGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGGAGATATACTGCAGGCTaGAAGGGAAAGTTCTATTCA | + |
|
Preference number: 4 (lower is better) Translates to: FLQLSAWTYLSSRGSSSRRYTAG*KGKFYS Trigger: TGAATAGAACTTTCCCTTTCAGCCTGCAGTATATCT...CCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR CCA 90 bp | TTCCTCCAGCTCTCAGCATGGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGGAAAACATGCAAGAGCTaGGGTCTTTATAGTGTTCGA | + |
|
Preference number: 4 (lower is better) Translates to: FLQLSAWTYLSSRGSSSRKTCKS*GLYSVR Trigger: TCGAACACTATAAAGACCCCAGCTCTTGCATGTTTT...CCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR GCA 90 bp | TTCCTCCAGCTCTCAGCATGGACTTATCTTTCCTCAAGGGGTTCCTCTTCCAGGATTCGTTTGTGGAATTaGAGAACCATCTCCACTTAT | + |
|
Preference number: 4 (lower is better) Translates to: FLQLSAWTYLSSRGSSSRIRLWN*RTISTY Trigger: ATAAGTGGAGATGGTTCTGCAATTCCACAAACGAAT...CCTGGAAGAGGAACCCCTTGAGGAAAGATAAGTCCATGCTGAGAGCTGGAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| 3UTR CAA 72 bp | AGCAGAAACATACGTTTAGCAGTTAAAGGGTTACTGTaGCATACAAATGTAGCATTTCTTTCAGGAAGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: SRNIRLAVKGLL*HTNVAFLSGSP Trigger: AGGGCTTCCTGAAAGAAATGCTACATTTGTATGCAACAGTAACCCTTTAACTGCTAAACGTATGTTTCTGCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS CCA 90 bp | CGGGGCGTGCCGCGAGTAGGAGTCTCTCCGTGCAAGCCTCGTTCCTaGGGTGGCACCCGAGTCACTGTCTTTCTCGATGCTGATTTCAAC | + |
|
Preference number: 5 (lower is better) Translates to: RGVPRVGVSPCKPRS*GGTRVTVFLDADFN Trigger: GTTGAAATCAGCATCGAGAAAGACAGTGACTCGGGTGCCACCCCAGGAACGAGGCTTGCACGGAGAGACTCCTACTCGCGGCACGCCCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041369.8 ENSMUST00000234803.2 |
||
| CDS-3UTR CAA 90 bp | GCCTCCTTCTCTGAGGAGAAAAGGAGGCTGACTACAAGCCACATTAACAGTGCACGCCTGGAAAAGGTCTaGGAAGGGCTCAGTCCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: ASFSEEKRRLTTSHINSARLEKV*EGLSPS Trigger: GCTGGGACTGAGCCCTTCCAAGACCTTTTCCAGGCG...TGCACTGTTAATGTGGCTTGTAGTCAGCCTCCTTTTCTCCTCAGAGAAGGAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR CAA 90 bp | GCCTCCTTCTCTGAGGAGAAAAGGAGGCTGACTACAAGCCACATTAACAGTGCAGCTGATTTCAACCACTaGAGGGATCTCTGCGGCACA | + |
|
Preference number: 5 (lower is better) Translates to: ASFSEEKRRLTTSHINSAADFNH*RDLCGT Trigger: TGTGCCGCAGAGATCCCTCAAGTGGTTGAAATCAGC...TGCACTGTTAATGTGGCTTGTAGTCAGCCTCCTTTTCTCCTCAGAGAAGGAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS-3UTR CAA 90 bp | CAAGTTCTCTTCACAGCATCGCCTGATCATAGTCTTCCTCCAGCTCTCAGCATGCTGATGCTTTTCTCTTaGACAGACGGACATCTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: QVLFTASPDHSLPPALSMLMLFS*TDGHLL Trigger: CAACAGATGTCCGTCTGTCAAAGAGAAAAGCATCAG...CATGCTGAGAGCTGGAGGAAGACTATGATCAGGCGATGCTGTGAAGAGAACTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||
| CDS CCA 72 bp | CCGCGAGTAGGAGTCTCTCCGTGCAAGCCTCGTTCCTaGGGTGGCACCCGAGTCACTGTCTTTCTCGATGCT | + |
|
Preference number: 6 (lower is better) Translates to: PRVGVSPCKPRS*GGTRVTVFLDA Trigger: AGCATCGAGAAAGACAGTGACTCGGGTGCCACCCCAGGAACGAGGCTTGCACGGAGAGACTCCTACTCGCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041369.8 ENSMUST00000234803.2 |
||
| CDS CCA 72 bp | CTTGAGGGATCTCTGCGGCACAGTTTTGGTTCCGCCTaGAAAAGGTCTTGGAAGGGCTCAGTCCCAGCTGTA | + |
|
Preference number: 6 (lower is better) Translates to: LEGSLRHSFGSA*KRSWKGSVPAV Trigger: TACAGCTGGGACTGAGCCCTTCCAAGACCTTTTCCAGGCGGAACCAAAACTGTGCCGCAGAGATCCCTCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041369.8 ENSMUST00000234803.2 |
||
| CDS CAA 90 bp | CTCGATGCTGATTTCAACCACTTGAGGGATCTCTGCGGCACAGTTTaGGTTCCGCCTGGAAAAGGTCTTGGAAGGGCTCAGTCCCAGCTG | + |
|
Preference number: 6 (lower is better) Translates to: LDADFNHLRDLCGTV*VPPGKGLGRAQSQL Trigger: CAGCTGGGACTGAGCCCTTCCAAGACCTTTTCCAGGCGGAACCAAAACTGTGCCGCAGAGATCCCTCAAGTGGTTGAAATCAGCATCGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041369.8 ENSMUST00000234803.2 |
||
| CDS CAA 90 bp | GGTGGCACCCGAGTCACTGTCTTTCTCGATGCTGATTTCAACCACTaGAGGGATCTCTGCGGCACAGTTTTGGTTCCGCCTGGAAAAGGT | + |
|
Preference number: 6 (lower is better) Translates to: GGTRVTVFLDADFNH*RDLCGTVLVPPGKG Trigger: ACCTTTTCCAGGCGGAACCAAAACTGTGCCGCAGAGATCCCTCAAGTGGTTGAAATCAGCATCGAGAAAGACAGTGACTCGGGTGCCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041369.8 ENSMUST00000234803.2 |
||
| CDS CAA 72 bp | GATTTCAACCACTTGAGGGATCTCTGCGGCACAGTTTaGGTTCCGCCTGGAAAAGGTCTTGGAAGGGCTCAG | + |
|
Preference number: 6 (lower is better) Translates to: DFNHLRDLCGTV*VPPGKGLGRAQ Trigger: CTGAGCCCTTCCAAGACCTTTTCCAGGCGGAACCAAAACTGTGCCGCAGAGATCCCTCAAGTGGTTGAAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041369.8 ENSMUST00000234803.2 |
||
| CDS CAA 72 bp | CGAGTCACTGTCTTTCTCGATGCTGATTTCAACCACTaGAGGGATCTCTGCGGCACAGTTTTGGTTCCGCCT | + |
|
Preference number: 6 (lower is better) Translates to: RVTVFLDADFNH*RDLCGTVLVPP Trigger: AGGCGGAACCAAAACTGTGCCGCAGAGATCCCTCAAGTGGTTGAAATCAGCATCGAGAAAGACAGTGACTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041369.8 ENSMUST00000234803.2 |
||
| CDS TCA 72 bp | ATCTGCAGATCACTGCGCGGCAGATATACTGCAGGCTaGAAGGGAAAGTTCTATTCAGTGATATCGTTAGCA | + |
|
Preference number: 6 (lower is better) Translates to: ICRSLRGRYTAG*KGKFYSVISLA Trigger: TGCTAACGATATCACTGAATAGAACTTTCCCTTTCAGCCTGCAGTATATCTGCCGCGCAGTGATCTGCAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041369.8 |
||