Pregenerated sensors for SOCS4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048379Ensembl transcript IDs: ENSMUST00000065562.6, ENSMUST00000227413.2
Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGCCCCAGGAGAAATGGAAAGTCAAGTTCACTTCCTGGTTGTGCTaGAGGCTCCCAGAGCAGCTGGCGTCTGCTCCAGACGAGCTATTA | + |
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Preference number: 1 (lower is better) Translates to: KPQEKWKVKFTSWLC*RLPEQLASAPDELL Trigger: TAATAGCTCGTCTGGAGCAGACGCCAGCTGCTCTGGGAGCCTCCAGCACAACCAGGAAGTGAACTTGACTTTCCATTTCTCCTGGGGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR CCA 90 bp | AGGGACCCGGCTGCCTCTGTGTCCCCAGTGCTGGGATTAAAGCTGTaGGCATCAAGGCCTGCACTAGACAGTCTTTCAACTGGAATTAAT | + |
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Preference number: 1 (lower is better) Translates to: RDPAASVSPVLGLKL*ASRPALDSLSTGIN Trigger: ATTAATTCCAGTTGAAAGACTGTCTAGTGCAGGCCTTGATGCCCACAGCTTTAATCCCAGCACTGGGGACACAGAGGCAGCCGGGTCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR CCA 90 bp | CCAGAGCAGCTGGCGTCTGCTCCAGACGAGCTATTAGCAATAAAGTaGTTCCCTCTCGCTGCCTTTTCCCTGAGGCAATGCCTAAATTCT | + |
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Preference number: 1 (lower is better) Translates to: PEQLASAPDELLAIK*FPLAAFSLRQCLNS Trigger: AGAATTTAGGCATTGCCTCAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCTAATAGCTCGTCTGGAGCAGACGCCAGCTGCTCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR TCA 90 bp | TACTGTCAGGGAGGTCAGCATCAGCTTCAAACACTTAAGTTACCCTaGCACTGGTGTTCACAGCCTGAGCCTCAGTACAACTCTAAGAGG | + |
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Preference number: 1 (lower is better) Translates to: YCQGGQHQLQTLKLP*HWCSQPEPQYNSKR Trigger: CCTCTTAGAGTTGTACTGAGGCTCAGGCTGTGAACACCAGTGTCAGGGTAACTTAAGTGTTTGAAGCTGATGCTGACCTCCCTGACAGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR GCA 90 bp | GTCTGCTCCAGACGAGCTATTAGCAATAAAGTGGTTCCCTCTCGCTaGCTTTTCCCTGAGGCAATGCCTAAATTCTTAATTTTAATATTT | + |
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Preference number: 1 (lower is better) Translates to: VCSRRAISNKVVPSR*LFPEAMPKFLILIF Trigger: AAATATTAAAATTAAGAATTTAGGCATTGCCTCAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCTAATAGCTCGTCTGGAGCAGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR TCA 90 bp | TCAGCAACTATTATTTTCAACTATGATCCAAGGGACACCTTTTACTaGACATTCAGGAGACCAAGACCATTACCTACATTTCACAGGAAA | + |
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Preference number: 1 (lower is better) Translates to: SATIIFNYDPRDTFY*TFRRPRPLPTFHRK Trigger: TTTCCTGTGAAATGTAGGTAATGGTCTTGGTCTCCTGAATGTTCAGTAAAAGGTGTCCCTTGGATCATAGTTGAAAATAATAGTTGCTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR TCA 90 bp | AACAATACAGGTTTGCTTACCAAATCAATAAATCTAGCCACAGGCTaGCTAAAAGCTTCCTTTAATGTTCCTATCAGATCCCCTTTAAAT | + |
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Preference number: 1 (lower is better) Translates to: NNTGLLTKSINLATG*LKASFNVPIRSPLN Trigger: ATTTAAAGGGGATCTGATAGGAACATTAAAGGAAGCTTTTAGTCAGCCTGTGGCTAGATTTATTGATTTGGTAAGCAAACCTGTATTGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR CCA 90 bp | CATCCAACTCTGAGGGACCCGGCTGCCTCTGTGTCCCCAGTGCTGGGATTAAAGTGTGACGTCATGTCATaGAGCTACTGCCACACCACA | + |
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Preference number: 2 (lower is better) Translates to: HPTLRDPAASVSPVLGLKCDVMS*SYCHTT Trigger: TGTGGTGTGGCAGTAGCTCCATGACATGACGTCACA...CTTTAATCCCAGCACTGGGGACACAGAGGCAGCCGGGTCCCTCAGAGTTGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR TCA 90 bp | GCTCCAGACGAGCTATTAGCAATAAAGTGGTTCCCTCTCGCTGCCTTTTCCCTGGTCAAGGTCAGTCACTaGAGAAACAGGGCACCCCTC | + |
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Preference number: 2 (lower is better) Translates to: APDELLAIKWFPLAAFSLVKVSH*RNRAPL Trigger: GAGGGGTGCCCTGTTTCTTCAGTGACTGACCTTGAC...CAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCTAATAGCTCGTCTGGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR GCA 90 bp | CATCCAACTCTGAGGGACCCGGCTGCCTCTGTGTCCCCAGTGCTGGGATTAAAGACGGTCCTGCCAAACTaGAGAACAAATACACCTCTA | + |
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Preference number: 2 (lower is better) Translates to: HPTLRDPAASVSPVLGLKTVLPN*RTNTPL Trigger: TAGAGGTGTATTTGTTCTGCAGTTTGGCAGGACCGT...CTTTAATCCCAGCACTGGGGACACAGAGGCAGCCGGGTCCCTCAGAGTTGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR CCA 90 bp | GCTCCAGACGAGCTATTAGCAATAAAGTGGTTCCCTCTCGCTGCCTTTTCCCTGCTGGGATTAAAGCTGTaGGCATCAAGGCCTGCACTA | + |
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Preference number: 2 (lower is better) Translates to: APDELLAIKWFPLAAFSLLGLKL*ASRPAL Trigger: TAGTGCAGGCCTTGATGCCCACAGCTTTAATCCCAG...CAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCTAATAGCTCGTCTGGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR CCA 90 bp | TCCAGAACTCATGGTGATCCTTCTGCCTCAGTCTCCCAAGTTTTGGGAATACAGCAATCCCCATCCCTCTaGTTTTCAAGTGCTAGGATT | + |
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Preference number: 2 (lower is better) Translates to: SRTHGDPSASVSQVLGIQQSPSL*FSSARI Trigger: AATCCTAGCACTTGAAAACCAGAGGGATGGGGATTG...CTGTATTCCCAAAACTTGGGAGACTGAGGCAGAAGGATCACCATGAGTTCTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR GCA 90 bp | ACTCTGTCAAGGTCAGTCACTGAAGAAACAGGGCACCCCTCCACTGTTTGTTACCCTGCTATTTTGCTTTaGAAAGCTTCCCGTAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: TLSRSVTEETGHPSTVCYPAILL*KASRKK Trigger: TTTCTTACGGGAAGCTTTGCAAAGCAAAATAGCAGG...GTAACAAACAGTGGAGGGGTGCCCTGTTTCTTCAGTGACTGACCTTGACAGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR CCA 90 bp | GCTCCAGACGAGCTATTAGCAATAAAGTGGTTCCCTCTCGCTGCCTTTTCCCTGATTATTAGCCATGCATaGTGTCAGATGCCTTTAAGA | + |
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Preference number: 2 (lower is better) Translates to: APDELLAIKWFPLAAFSLIISHA*CQMPLR Trigger: TCTTAAAGGCATCTGACACCATGCATGGCTAATAAT...CAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCTAATAGCTCGTCTGGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR TCA 90 bp | GGAGGAATTATTAGCCATGCATGGTGTCAGATGCCTTTAAGACAGTACTTGGGAGGGCACAGTTTTATTTaGTTCAACTGCCTTTGTACA | + |
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Preference number: 2 (lower is better) Translates to: GGIISHAWCQMPLRQYLGGHSFI*FNCLCT Trigger: TGTACAAAGGCAGTTGAATCAAATAAAACTGTGCCC...TCCCAAGTACTGTCTTAAAGGCATCTGACACCATGCATGGCTAATAATTCCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR CCA 90 bp | GGAGGAATTATTAGCCATGCATGGTGTCAGATGCCTTTAAGACAGTACTTGGGACTATGTATTTTCCCCTaGGAACTAGAGTTCCCAAAA | + |
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Preference number: 2 (lower is better) Translates to: GGIISHAWCQMPLRQYLGLCIFP*ELEFPK Trigger: TTTTGGGAACTCTAGTTCCCAGGGGAAAATACATAG...TCCCAAGTACTGTCTTAAAGGCATCTGACACCATGCATGGCTAATAATTCCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR CCA 90 bp | ACCATTACCTACATTTCACAGGAAATTAAGGCAAAGGAGTATTTAGGATTGAGCAGTTTCTTTGCAGGGTaGGGGGCAGGGATATTGAGA | + |
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Preference number: 2 (lower is better) Translates to: TITYISQEIKAKEYLGLSSFFAG*GAGILR Trigger: TCTCAATATCCCTGCCCCCCACCCTGCAAAGAAACT...GCTCAATCCTAAATACTCCTTTGCCTTAATTTCCTGTGAAATGTAGGTAATGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR TCA 72 bp | GAAACTCACTTTGTAGACCAGGTTGGCATCCAACTCTaGGGGACCCGGCTGCCTCTGTGTCCCCAGTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: ETHFVDQVGIQL*GTRLPLCPQCW Trigger: CCAGCACTGGGGACACAGAGGCAGCCGGGTCCCTCAGAGTTGGATGCCAACCTGGTCTACAAAGTGAGTTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR GCA 72 bp | CTGGTTGTGCTGGAGGCTCCCAGAGCAGCTGGCGTCTaGTCCAGACGAGCTATTAGCAATAAAGTGGTTCCC | + |
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Preference number: 3 (lower is better) Translates to: LVVLEAPRAAGV*SRRAISNKVVP Trigger: GGGAACCACTTTATTGCTAATAGCTCGTCTGGAGCAGACGCCAGCTGCTCTGGGAGCCTCCAGCACAACCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR CCA 72 bp | GAGAAATGGAAAGTCAAGTTCACTTCCTGGTTGTGCTaGAGGCTCCCAGAGCAGCTGGCGTCTGCTCCAGAC | + |
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Preference number: 3 (lower is better) Translates to: EKWKVKFTSWLC*RLPEQLASAPD Trigger: GTCTGGAGCAGACGCCAGCTGCTCTGGGAGCCTCCAGCACAACCAGGAAGTGAACTTGACTTTCCATTTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR CAA 90 bp | CATCCAACTCTGAGGGACCCGGCTGCCTCTGTGTCCCCAGTGCTGGGATTAAAGCCTTTAAGACAGTACTaGGGAGGCAAAGGCAGTAGT | + |
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Preference number: 3 (lower is better) Translates to: HPTLRDPAASVSPVLGLKPLRQY*GGKGSS Trigger: ACTACTGCCTTTGCCTCCCAAGTACTGTCTTAAAGG...CTTTAATCCCAGCACTGGGGACACAGAGGCAGCCGGGTCCCTCAGAGTTGGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR CCA 72 bp | CTGGCGTCTGCTCCAGACGAGCTATTAGCAATAAAGTaGTTCCCTCTCGCTGCCTTTTCCCTGAGGCAATGC | + |
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Preference number: 3 (lower is better) Translates to: LASAPDELLAIK*FPLAAFSLRQC Trigger: GCATTGCCTCAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCTAATAGCTCGTCTGGAGCAGACGCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR TCA 72 bp | GAGCATCTCAGTAACTACAAAAGTGCCACAGCGAGATaGGGTAGTCGGCCTGTCTACTGTCAGGGAGGTCAG | + |
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Preference number: 3 (lower is better) Translates to: EHLSNYKSATAR*GSRPVYCQGGQ Trigger: CTGACCTCCCTGACAGTAGACAGGCCGACTACCTCATCTCGCTGTGGCACTTTTGTAGTTACTGAGATGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR CAA 90 bp | TCCAGAACTCATGGTGATCCTTCTGCCTCAGTCTCCCAAGTTTTGGGAATACAGCTGACTGGCTTAAACTaGCAGCAATCCCCATCCCTC | + |
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Preference number: 3 (lower is better) Translates to: SRTHGDPSASVSQVLGIQLTGLN*QQSPSL Trigger: GAGGGATGGGGATTGCTGCAAGTTTAAGCCAGTCAG...CTGTATTCCCAAAACTTGGGAGACTGAGGCAGAAGGATCACCATGAGTTCTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR CAA 90 bp | CATCCAACTCTGAGGGACCCGGCTGCCTCTGTGTCCCCAGTGCTGGGATTAAAGCCAATCCCTAATTTTTaGTTACTCTCTTCTCTTTCC | + |
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Preference number: 3 (lower is better) Translates to: HPTLRDPAASVSPVLGLKPIPNF*LLSSLS Trigger: GGAAAGAGAAGAGAGTAACAAAAAATTAGGGATTGG...CTTTAATCCCAGCACTGGGGACACAGAGGCAGCCGGGTCCCTCAGAGTTGGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR TCA 72 bp | AGCCTGAGCCTCAGTACAACTCTAAGAGGTACACCTTaGGTGGCTACCTCTCACAGGGATCACACGATCTTT | + |
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Preference number: 3 (lower is better) Translates to: SLSLSTTLRGTP*VATSHRDHTIF Trigger: AAAGATCGTGTGATCCCTGTGAGAGGTAGCCACTCAAGGTGTACCTCTTAGAGTTGTACTGAGGCTCAGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR TCA 72 bp | GGAGGTCAGCATCAGCTTCAAACACTTAAGTTACCCTaGCACTGGTGTTCACAGCCTGAGCCTCAGTACAAC | + |
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Preference number: 3 (lower is better) Translates to: GGQHQLQTLKLP*HWCSQPEPQYN Trigger: GTTGTACTGAGGCTCAGGCTGTGAACACCAGTGTCAGGGTAACTTAAGTGTTTGAAGCTGATGCTGACCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR CAA 90 bp | GCTCCAGACGAGCTATTAGCAATAAAGTGGTTCCCTCTCGCTGCCTTTTCCCTGTGTAACCCTGCTATTTaGCTTTGCAAAGCTTCCCGT | + |
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Preference number: 3 (lower is better) Translates to: APDELLAIKWFPLAAFSLCNPAI*LCKASR Trigger: ACGGGAAGCTTTGCAAAGCAAAATAGCAGGGTTACA...CAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCTAATAGCTCGTCTGGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR CAA 90 bp | GCTCCAGACGAGCTATTAGCAATAAAGTGGTTCCCTCTCGCTGCCTTTTCCCTGAGTATTTCTCAGAGTTaGATGACAGCCTGGTCGACT | + |
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Preference number: 3 (lower is better) Translates to: APDELLAIKWFPLAAFSLSISQS*MTAWST Trigger: AGTCGACCAGGCTGTCATCAAACTCTGAGAAATACT...CAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCTAATAGCTCGTCTGGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR CCA 72 bp | CTTTTTGGAGACAAATTCTCAGCACACAGCTCTGACTaGCTTAAACTTGCAGCAATCCCCATCCCTCTGGTT | + |
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Preference number: 3 (lower is better) Translates to: LFGDKFSAHSSD*LKLAAIPIPLV Trigger: AACCAGAGGGATGGGGATTGCTGCAAGTTTAAGCCAGTCAGAGCTGTGTGCTGAGAATTTGTCTCCAAAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR CAA 90 bp | ACCATTACCTACATTTCACAGGAAATTAAGGCAAAGGAGTATTTAGGATTGAGCAAGTTCACTTCCTGGTaGTGCTGGAGGCTCCCAGAG | + |
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Preference number: 3 (lower is better) Translates to: TITYISQEIKAKEYLGLSKFTSW*CWRLPE Trigger: CTCTGGGAGCCTCCAGCACAACCAGGAAGTGAACTT...GCTCAATCCTAAATACTCCTTTGCCTTAATTTCCTGTGAAATGTAGGTAATGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR CCA 72 bp | TATTTAAAAGAGGCAGATAGCTCCCACAAGGAAAACTaGGCACTCTGTCAAGGTCAGTCACTGAAGAAACAG | + |
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Preference number: 3 (lower is better) Translates to: YLKEADSSHKEN*ALCQGQSLKKQ Trigger: CTGTTTCTTCAGTGACTGACCTTGACAGAGTGCCCAGTTTTCCTTGTGGGAGCTATCTGCCTCTTTTAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR GCA 72 bp | AGACGAGCTATTAGCAATAAAGTGGTTCCCTCTCGCTaGCTTTTCCCTGAGGCAATGCCTAAATTCTTAATT | + |
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Preference number: 3 (lower is better) Translates to: RRAISNKVVPSR*LFPEAMPKFLI Trigger: AATTAAGAATTTAGGCATTGCCTCAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCTAATAGCTCGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR-3UTR CAA 90 bp | GGTGGATCCAGGAGCTGTTTAGAAACTATGTATTTTCCCCTGGGAACTAGAGTTAGGGCACAGTTTTATTaGATTCAACTGCCTTTGTAC | + |
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Preference number: 3 (lower is better) Translates to: GGSRSCLETMYFPLGTRVRAQFY*IQLPLY Trigger: GTACAAAGGCAGTTGAATCAAATAAAACTGTGCCCT...AACTCTAGTTCCCAGGGGAAAATACATAGTTTCTAAACAGCTCCTGGATCCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR TCA 72 bp | ATTATTTTCAACTATGATCCAAGGGACACCTTTTACTaGACATTCAGGAGACCAAGACCATTACCTACATTT | + |
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Preference number: 3 (lower is better) Translates to: IIFNYDPRDTFY*TFRRPRPLPTF Trigger: AAATGTAGGTAATGGTCTTGGTCTCCTGAATGTTCAGTAAAAGGTGTCCCTTGGATCATAGTTGAAAATAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR TCA 72 bp | TCAGAAATGTATGAGTTAATGTTCTTTCAATCAGGCTaGAGCAAATTTCCTTACACAGCTGAACTAACATCA | + |
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Preference number: 3 (lower is better) Translates to: SEMYELMFFQSG*SKFPYTAELTS Trigger: TGATGTTAGTTCAGCTGTGTAAGGAAATTTGCTTCAGCCTGATTGAAAGAACATTAACTCATACATTTCTGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| CDS-3UTR GCA 90 bp | CATCCAACTCTGAGGGACCCGGCTGCCTCTGTGTCCCCAGTGCTGGGATTAAAGTTTATTGGAAAACACTaGCCCACCGCATCTTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: HPTLRDPAASVSPVLGLKFIGKH*PTASCS Trigger: ACTGCAAGATGCGGTGGGGCAGTGTTTTCCAATAAA...CTTTAATCCCAGCACTGGGGACACAGAGGCAGCCGGGTCCCTCAGAGTTGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| CDS-3UTR GCA 90 bp | GCTCCAGACGAGCTATTAGCAATAAAGTGGTTCCCTCTCGCTGCCTTTTCCCTGGGAGGTGCCTCCAACTaGAGGATCTCCTCTTCCATT | + |
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Preference number: 4 (lower is better) Translates to: APDELLAIKWFPLAAFSLGGASN*RISSSI Trigger: AATGGAAGAGGAGATCCTGCAGTTGGAGGCACCTCC...CAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCTAATAGCTCGTCTGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| CDS-3UTR CCA 90 bp | GGGAGGGAGGGAGGGAGGGAGGAATTATTAGCCATGCATGGTGTCAGATGCCTTCACAAGGCTGGCCATTaGTATGTGAGAAACAGGGTA | + |
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Preference number: 4 (lower is better) Translates to: GREGGREELLAMHGVRCLHKAGH*YVRNRV Trigger: TACCCTGTTTCTCACATACCAATGGCCAGCCTTGTG...AAGGCATCTGACACCATGCATGGCTAATAATTCCTCCCTCCCTCCCTCCCTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR CAA 72 bp | CAGCCTGAGCCTCAGTACAACTCTAAGAGGTACACCTaGAGTGGCTACCTCTCACAGGGATCACACGATCTT | + |
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Preference number: 4 (lower is better) Translates to: QPEPQYNSKRYT*SGYLSQGSHDL Trigger: AAGATCGTGTGATCCCTGTGAGAGGTAGCCACTCAAGGTGTACCTCTTAGAGTTGTACTGAGGCTCAGGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| CDS-3UTR TCA 90 bp | CATCCAACTCTGAGGGACCCGGCTGCCTCTGTGTCCCCAGTGCTGGGATTAAAGTATAATTTCATCCTCTaGATCCATGTCACTGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: HPTLRDPAASVSPVLGLKYNFIL*IHVTVF Trigger: GAAGACAGTGACATGGATTCAGAGGATGAAATTATA...CTTTAATCCCAGCACTGGGGACACAGAGGCAGCCGGGTCCCTCAGAGTTGGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| CDS-3UTR TCA 90 bp | ACTCTGTCAAGGTCAGTCACTGAAGAAACAGGGCACCCCTCCACTGTTTGTTACGGATTGTTACTGATCTaGAGGAGGTCTGGAACAAGG | + |
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Preference number: 4 (lower is better) Translates to: TLSRSVTEETGHPSTVCYGLLLI*RRSGTR Trigger: CCTTGTTCCAGACCTCCTTCAGATCAGTAACAATCC...GTAACAAACAGTGGAGGGGTGCCCTGTTTCTTCAGTGACTGACCTTGACAGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| CDS-3UTR TCA 90 bp | GGTGGATCCAGGAGCTGTTTAGAAACTATGTATTTTCCCCTGGGAACTAGAGTTCACTGTTGGCAGTTATaGCACAAGGCTGGCCATTGG | + |
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Preference number: 4 (lower is better) Translates to: GGSRSCLETMYFPLGTRVHCWQL*HKAGHW Trigger: CCAATGGCCAGCCTTGTGTCATAACTGCCAACAGTG...AACTCTAGTTCCCAGGGGAAAATACATAGTTTCTAAACAGCTCCTGGATCCACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| CDS-3UTR CCA 90 bp | GGGAGGGAGGGAGGGAGGGAGGAATTATTAGCCATGCATGGTGTCAGATGCCTTAACTCTCACTCTTTTTaGACCAAGACAACTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: GREGGREELLAMHGVRCLNSHSF*TKTTSF Trigger: GAAAGAAGTTGTCTTGGTCCAAAAAGAGTGAGAGTT...AAGGCATCTGACACCATGCATGGCTAATAATTCCTCCCTCCCTCCCTCCCTCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| CDS-3UTR CCA 90 bp | GGGAGGGAGGGAGGGAGGGAGGAATTATTAGCCATGCATGGTGTCAGATGCCTTAAGACACAAGGATCATaGGCATCAAAGCTAAAGTTA | + |
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Preference number: 4 (lower is better) Translates to: GREGGREELLAMHGVRCLKTQGS*ASKLKL Trigger: TAACTTTAGCTTTGATGCCCATGATCCTTGTGTCTT...AAGGCATCTGACACCATGCATGGCTAATAATTCCTCCCTCCCTCCCTCCCTCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| CDS-3UTR TCA 90 bp | AGCAATAAAGTGGTTCCCTCTCGCTGCCTTTTCCCTGAGGCAATGCCTAAATTCTTTCTTCGTTTCAGCTaGGCATCTCTCAGTTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: SNKVVPSRCLFPEAMPKFFLRFS*ASLSFL Trigger: GAGGAAACTGAGAGATGCTCAGCTGAAACGAAGAAA...GAATTTAGGCATTGCCTCAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| CDS-3UTR CCA 90 bp | ACTCTGTCAAGGTCAGTCACTGAAGAAACAGGGCACCCCTCCACTGTTTGTTACGCTTATTCCTTTTTCTaGAGCTTGTGCACAGCGTTA | + |
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Preference number: 4 (lower is better) Translates to: TLSRSVTEETGHPSTVCYAYSFF*SLCTAL Trigger: TAACGCTGTGCACAAGCTCCAGAAAAAGGAATAAGC...GTAACAAACAGTGGAGGGGTGCCCTGTTTCTTCAGTGACTGACCTTGACAGAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| 3UTR CAA 72 bp | ACAAATTCTCAGCACACAGCTCTGACTGGCTTAAACTaGCAGCAATCCCCATCCCTCTGGTTTTCAAGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TNSQHTALTGLN*QQSPSLWFSSA Trigger: AGCACTTGAAAACCAGAGGGATGGGGATTGCTGCAAGTTTAAGCCAGTCAGAGCTGTGTGCTGAGAATTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR GCA 90 bp | GGAGGAATTATTAGCCATGCATGGTGTCAGATGCCTTTAAGACAGTACTTGGGACTCGAAGTAAAAAGGTaGCCTCTGGCTTTCCTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: GGIISHAWCQMPLRQYLGLEVKR*PLAFLP Trigger: TGGAAGGAAAGCCAGAGGGCACCTTTTTACTTCGAG...TCCCAAGTACTGTCTTAAAGGCATCTGACACCATGCATGGCTAATAATTCCTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR GCA 90 bp | GGAGGAATTATTAGCCATGCATGGTGTCAGATGCCTTTAAGACAGTACTTGGGATGGGAAGGGCATCGATaGCATCGTAAGTCGTACAAT | + |
|
Preference number: 4 (lower is better) Translates to: GGIISHAWCQMPLRQYLGWEGHR*HRKSYN Trigger: ATTGTACGACTTACGATGGCATCGATGCCCTTCCCA...TCCCAAGTACTGTCTTAAAGGCATCTGACACCATGCATGGCTAATAATTCCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR CCA 90 bp | ACTCTGTCAAGGTCAGTCACTGAAGAAACAGGGCACCCCTCCACTGTTTGTTACTCTCAACAGTACCTATaGCTTCAGATTCAGAACAAC | + |
|
Preference number: 4 (lower is better) Translates to: TLSRSVTEETGHPSTVCYSQQYL*LQIQNN Trigger: GTTGTTCTGAATCTGAAGCCATAGGTACTGTTGAGA...GTAACAAACAGTGGAGGGGTGCCCTGTTTCTTCAGTGACTGACCTTGACAGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| 3UTR CAA 72 bp | AGCCATGCATGGTGTCAGATGCCTTTAAGACAGTACTaGGGAGGCAAAGGCAGTAGTATTTCTCAGAGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: SHAWCQMPLRQY*GGKGSSISQSL Trigger: CAAACTCTGAGAAATACTACTGCCTTTGCCTCCCAAGTACTGTCTTAAAGGCATCTGACACCATGCATGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR TCA 90 bp | GGAGGAATTATTAGCCATGCATGGTGTCAGATGCCTTTAAGACAGTACTTGGGACTATGCCCACAGGAATaGTCTAAGTCCAACTCAATG | + |
|
Preference number: 4 (lower is better) Translates to: GGIISHAWCQMPLRQYLGLCPQE*SKSNSM Trigger: CATTGAGTTGGACTTAGATCATTCCTGTGGGCATAG...TCCCAAGTACTGTCTTAAAGGCATCTGACACCATGCATGGCTAATAATTCCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR GCA 90 bp | GGTGGATCCAGGAGCTGTTTAGAAACTATGTATTTTCCCCTGGGAACTAGAGTTGTTCTGCAAATATGCTaGAAGGAAAAGGGGAACGTC | + |
|
Preference number: 4 (lower is better) Translates to: GGSRSCLETMYFPLGTRVVLQIC*KEKGNV Trigger: GACGTTCCCCTTTTCCTTGCAGCATATTTGCAGAAC...AACTCTAGTTCCCAGGGGAAAATACATAGTTTCTAAACAGCTCCTGGATCCACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR GCA 90 bp | GGTGGATCCAGGAGCTGTTTAGAAACTATGTATTTTCCCCTGGGAACTAGAGTTACCGTTCTGCAAATATaGTGCAAGGAAAAGGGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: GGSRSCLETMYFPLGTRVTVLQI*CKEKGN Trigger: GTTCCCCTTTTCCTTGCAGCATATTTGCAGAACGGT...AACTCTAGTTCCCAGGGGAAAATACATAGTTTCTAAACAGCTCCTGGATCCACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR CCA 90 bp | AGCAATAAAGTGGTTCCCTCTCGCTGCCTTTTCCCTGAGGCAATGCCTAAATTCCTAAGCTGCCTTTCTTaGCTTCTTAGAGGAATTTCA | + |
|
Preference number: 4 (lower is better) Translates to: SNKVVPSRCLFPEAMPKFLSCLS*LLRGIS Trigger: TGAAATTCCTCTAAGAAGCCAAGAAAGGCAGCTTAG...GAATTTAGGCATTGCCTCAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR CCA 90 bp | AGCAATAAAGTGGTTCCCTCTCGCTGCCTTTTCCCTGAGGCAATGCCTAAATTCGTAATATCAGGAGAATaGAAGACACAAGGATCATGG | + |
|
Preference number: 4 (lower is better) Translates to: SNKVVPSRCLFPEAMPKFVISGE*KTQGSW Trigger: CCATGATCCTTGTGTCTTCCATTCTCCTGATATTAC...GAATTTAGGCATTGCCTCAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR CCA 90 bp | GGAGGAATTATTAGCCATGCATGGTGTCAGATGCCTTTAAGACAGTACTTGGGAAGAACATACAGGCACTaGGGTCCTTATAGTGTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: GGIISHAWCQMPLRQYLGRTYRH*GPYSVP Trigger: TGGAACACTATAAGGACCCCAGTGCCTGTATGTTCT...TCCCAAGTACTGTCTTAAAGGCATCTGACACCATGCATGGCTAATAATTCCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR GCA 90 bp | ACCATTACCTACATTTCACAGGAAATTAAGGCAAAGGAGTATTTAGGATTGAGCGTGGAACTTAGGAGGTaGCTCCAACTGCAGGATCTC | + |
|
Preference number: 4 (lower is better) Translates to: TITYISQEIKAKEYLGLSVELRR*LQLQDL Trigger: GAGATCCTGCAGTTGGAGGCACCTCCTAAGTTCCAC...GCTCAATCCTAAATACTCCTTTGCCTTAATTTCCTGTGAAATGTAGGTAATGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR GCA 90 bp | ACCATTACCTACATTTCACAGGAAATTAAGGCAAAGGAGTATTTAGGATTGAGCTGCCCCACCGCATCTTaGAGTTTCTGTTTAAGGGAT | + |
|
Preference number: 4 (lower is better) Translates to: TITYISQEIKAKEYLGLSCPTAS*SFCLRD Trigger: ATCCCTTAAACAGAAACTGCAAGATGCGGTGGGGCA...GCTCAATCCTAAATACTCCTTTGCCTTAATTTCCTGTGAAATGTAGGTAATGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| 3UTR CAA 72 bp | AGATACAAAGCATTTCAGAGTATACAAGTCGCTCTCTaGTCCTCATTTAATACACATTTCAAAGCTACACAT | + |
|
Preference number: 4 (lower is better) Translates to: RYKAFQSIQVAL*SSFNTHFKATH Trigger: ATGTGTAGCTTTGAAATGTGTATTAAATGAGGACAAGAGAGCGACTTGTATACTCTGAAATGCTTTGTATCT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| 3UTR CAA 72 bp | GTCAAGAAAGCTTATTACAGACAAGTGAATATGATTTaGTATGCCCCACAAAGGTGCTACTTTAAAAATGTG | + |
|
Preference number: 4 (lower is better) Translates to: VKKAYYRQVNMI*YAPQRCYFKNV Trigger: CACATTTTTAAAGTAGCACCTTTGTGGGGCATACAAAATCATATTCACTTGTCTGTAATAAGCTTTCTTGAC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR CAA 90 bp | CATCCAACTCTGAGGGACCCGGCTGCCTCTGTGTCCCCAGTGCTGGGATTAAAGCTGCCCCACCGCATCTaGCAGTTTCTGTTTAAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: HPTLRDPAASVSPVLGLKLPHRI*QFLFKG Trigger: TCCCTTAAACAGAAACTGCAAGATGCGGTGGGGCAG...CTTTAATCCCAGCACTGGGGACACAGAGGCAGCCGGGTCCCTCAGAGTTGGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS GCA 90 bp | AACAAGGCAGTGGACGTAGTCGATCTGGGTGTGGAACTTAGGAGGTaGCTCCAACTGCAGGATCTCCTCTTCCATTTCCCACCTGGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: NKAVDVVDLGVELRR*LQLQDLLFHFPPGL Trigger: AAGCCCAGGTGGGAAATGGAAGAGGAGATCCTGCAGTTGGAGGCACCTCCTAAGTTCCACACCCAGATCGACTACGTCCACTGCCTTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS CCA 90 bp | CATGACACCCCAGTAGCACGGATTGTTACTGATCTGAAGGAGGTCTaGAACAAGGCAGTGGACGTAGTCGATCTGGGTGTGGAACTTAGG | + |
|
Preference number: 5 (lower is better) Translates to: HDTPVARIVTDLKEV*NKAVDVVDLGVELR Trigger: CCTAAGTTCCACACCCAGATCGACTACGTCCACTGCCTTGTTCCAGACCTCCTTCAGATCAGTAACAATCCGTGCTACTGGGGTGTCATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR CAA 90 bp | GGGAGGGAGGGAGGGAGGGAGGAATTATTAGCCATGCATGGTGTCAGATGCCTTACCCATTCATCTGAGTaGGGACTCATAGGAACAGTG | + |
|
Preference number: 5 (lower is better) Translates to: GREGGREELLAMHGVRCLTHSSE*GLIGTV Trigger: CACTGTTCCTATGAGTCCCAACTCAGATGAATGGGT...AAGGCATCTGACACCATGCATGGCTAATAATTCCTCCCTCCCTCCCTCCCTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR CAA 90 bp | ACTCTGTCAAGGTCAGTCACTGAAGAAACAGGGCACCCCTCCACTGTTTGTTACGTACACGAAGCACTGTaGGCAGTTATGACACAAGGC | + |
|
Preference number: 5 (lower is better) Translates to: TLSRSVTEETGHPSTVCYVHEAL*AVMTQG Trigger: GCCTTGTGTCATAACTGCCAACAGTGCTTCGTGTAC...GTAACAAACAGTGGAGGGGTGCCCTGTTTCTTCAGTGACTGACCTTGACAGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS GCA 90 bp | AGCCCTGGAGAGTGTCGGCCACTACAATTCTTTATTGGAAAACACTaGCCCACCGCATCTTGCAGTTTCTGTTTAAGGGATCGGCCTAAA | + |
|
Preference number: 5 (lower is better) Translates to: SPGECRPLQFFIGKH*PTASCSFCLRDRPK Trigger: TTTAGGCCGATCCCTTAAACAGAAACTGCAAGATGCGGTGGGGCAGTGTTTTCCAATAAAGAATTGTAGTGGCCGACACTCTCCAGGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065562.6 ENSMUST00000227413.2 |
||
| CDS TCA 90 bp | GAGCGAGGTGGGAAAGGGCACTTATCTAACATGAGTTCACTGATATaGATCTTTCTTTTAGATGGAAGCCCTGGAGAGTGTCGGCCACTA | + |
|
Preference number: 5 (lower is better) Translates to: ERGGKGHLSNMSSLI*IFLLDGSPGECRPL Trigger: TAGTGGCCGACACTCTCCAGGGCTTCCATCTAAAAGAAAGATTCATATCAGTGAACTCATGTTAGATAAGTGCCCTTTCCCACCTCGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065562.6 ENSMUST00000227413.2 |
||
| CDS TCA 90 bp | TGTGAGAAACAGGGTATGTCATCTTCTGTGTTTCTTCGTTTCAGCTaGGCATCTCTCAGTTTCCTCTCAGACAGGTCTGCACTCACCCAT | + |
|
Preference number: 5 (lower is better) Translates to: CEKQGMSSSVFLRFS*ASLSFLSDRSALTH Trigger: ATGGGTGAGTGCAGACCTGTCTGAGAGGAAACTGAGAGATGCTCAGCTGAAACGAAGAAACACAGAAGATGACATACCCTGTTTCTCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS TCA 90 bp | AACCAGTTATGTGACCACCTGTACACGAAGCACTGTTGGCAGTTATaGCACAAGGCTGGCCATTGGTATGTGAGAAACAGGGTATGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: NQLCDHLYTKHCWQL*HKAGHWYVRNRVCH Trigger: ATGACATACCCTGTTTCTCACATACCAATGGCCAGCCTTGTGTCATAACTGCCAACAGTGCTTCGTGTACAGGTGGTCACATAACTGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS CCA 90 bp | TTTAGATGGAAGCCCTGGAGAGTGTCGGCCACTACAATTCTTTATTaGAAAACACTGCCCCACCGCATCTTGCAGTTTCTGTTTAAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: FRWKPWRVSATTILY*KTLPHRILQFLFKG Trigger: TCCCTTAAACAGAAACTGCAAGATGCGGTGGGGCAGTGTTTTCCAATAAAGAATTGTAGTGGCCGACACTCTCCAGGGCTTCCATCTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065562.6 ENSMUST00000227413.2 |
||
| CDS-3UTR CAA 90 bp | AGCAATAAAGTGGTTCCCTCTCGCTGCCTTTTCCCTGAGGCAATGCCTAAATTCCACTACAATTCTTTATaGGAAAACACTGCCCCACCG | + |
|
Preference number: 5 (lower is better) Translates to: SNKVVPSRCLFPEAMPKFHYNSL*ENTAPP Trigger: CGGTGGGGCAGTGTTTTCCAATAAAGAATTGTAGTG...GAATTTAGGCATTGCCTCAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS GCA 90 bp | CAGAGAATAAATAATCTTCCTGCGCTGAATCTCGAAGTAAAAAGGTaGCCTCTGGCTTTCCTTCCAGCAGAGCTTCGGCTGCATATTTGT | + |
|
Preference number: 5 (lower is better) Translates to: QRINNLPALNLEVKR*PLAFLPAELRLHIC Trigger: ACAAATATGCAGCCGAAGCTCTGCTGGAAGGAAAGCCAGAGGGCACCTTTTTACTTCGAGATTCAGCGCAGGAAGATTATTTATTCTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR CAA 90 bp | AGCAATAAAGTGGTTCCCTCTCGCTGCCTTTTCCCTGAGGCAATGCCTAAATTCCTGTCTTCTATGCTGTaGTTTGTGACCAAGTTCATC | + |
|
Preference number: 5 (lower is better) Translates to: SNKVVPSRCLFPEAMPKFLSSML*FVTKFI Trigger: GATGAACTTGGTCACAAACAACAGCATAGAAGACAG...GAATTTAGGCATTGCCTCAGGGAAAAGGCAGCGAGAGGGAACCACTTTATTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS TCA 90 bp | ATCTCTCAGTTTCCTCTCAGACAGGTCTGCACTCACCCATTCATCTaGGTTGGGACTCATAGGAACAGTGTGTCGTTTAATAAAATGCCA | + |
|
Preference number: 5 (lower is better) Translates to: ISQFPLRQVCTHPFI*VGTHRNSVSFNKMP Trigger: TGGCATTTTATTAAACGACACACTGTTCCTATGAGTCCCAACTCAGATGAATGGGTGAGTGCAGACCTGTCTGAGAGGAAACTGAGAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS TCA 90 bp | TCTATGCTGTTGTTTGTGACCAAGTTCATCATAGAACCAGTTATGTaGCCACCTGTACACGAAGCACTGTTGGCAGTTATGACACAAGGC | + |
|
Preference number: 5 (lower is better) Translates to: SMLLFVTKFIIEPVM*PPVHEALLAVMTQG Trigger: GCCTTGTGTCATAACTGCCAACAGTGCTTCGTGTACAGGTGGTCACATAACTGGTTCTATGATGAACTTGGTCACAAACAACAGCATAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS CCA 90 bp | GCTGCCTTTCTATGGCTTCAGATTCAGAACAACTCTCACTCTTTTTaGACCAAGACAACTTCTTTCCACTCCACACATAACCATCCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: AAFLWLQIQNNSHSF*TKTTSFHSTHNHPS Trigger: GGAAGGATGGTTATGTGTGGAGTGGAAAGAAGTTGTCTTGGTCCAAAAAGAGTGAGAGTTGTTCTGAATCTGAAGCCATAGAAAGGCAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227413.2 |
||
| CDS TCA 90 bp | AGTTTCTGTTTAAGGGATCGGCCTAAAAATCTATGCCCACAGGAATaGTCTAAGTCCAACTCAATGGACGAACAGCTAAGCTGCCTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: SFCLRDRPKNLCPQE*SKSNSMDEQLSCLS Trigger: AGAAAGGCAGCTTAGCTGTTCGTCCATTGAGTTGGACTTAGATCATTCCTGTGGGCATAGATTTTTAGGCCGATCCCTTAAACAGAAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065562.6 ENSMUST00000227413.2 |
||
| CDS CCA 90 bp | CAACAGTACCTATGGCTTCAGATTCAGAACAACTCTCACTCTTTTTaGACCAAGACAACTTCTTTCCACTCCACACATAACCATCCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: QQYLWLQIQNNSHSF*TKTTSFHSTHNHPS Trigger: GGAAGGATGGTTATGTGTGGAGTGGAAAGAAGTTGTCTTGGTCCAAAAAGAGTGAGAGTTGTTCTGAATCTGAAGCCATAGGTACTGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS-3UTR CAA 90 bp | GGTGGATCCAGGAGCTGTTTAGAAACTATGTATTTTCCCCTGGGAACTAGAGTTCAACTCTCACTCTTTTaGGACCAAGACAACTTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: GGSRSCLETMYFPLGTRVQLSLF*DQDNFF Trigger: AAAGAAGTTGTCTTGGTCCAAAAAGAGTGAGAGTTG...AACTCTAGTTCCCAGGGGAAAATACATAGTTTCTAAACAGCTCCTGGATCCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS TCA 90 bp | ATTCCTTTTTCTGGAGCTTGTGCACAGCGTTATAATTTCATCCTCTaGATCCATGTCACTGTCTTCTATGCTGTTGTTTGTGACCAAGTT | + |
|
Preference number: 5 (lower is better) Translates to: IPFSGACAQRYNFIL*IHVTVFYAVVCDQV Trigger: AACTTGGTCACAAACAACAGCATAGAAGACAGTGACATGGATTCAGAGGATGAAATTATAACGCTGTGCACAAGCTCCAGAAAAAGGAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS GCA 72 bp | GTGGACGTAGTCGATCTGGGTGTGGAACTTAGGAGGTaGCTCCAACTGCAGGATCTCCTCTTCCATTTCCCA | + |
|
Preference number: 6 (lower is better) Translates to: VDVVDLGVELRR*LQLQDLLFHFP Trigger: TGGGAAATGGAAGAGGAGATCCTGCAGTTGGAGGCACCTCCTAAGTTCCACACCCAGATCGACTACGTCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS CCA 72 bp | GCTGCAAGGAAAAGGGGAACGTCCGGATTAAGGGAGTaGACAAGAGCGGCTCAAAGAACATACAGGCACTGG | + |
|
Preference number: 6 (lower is better) Translates to: AARKRGTSGLRE*TRAAQRTYRHW Trigger: CCAGTGCCTGTATGTTCTTTGAGCCGCTCTTGTCCACTCCCTTAATCCGGACGTTCCCCTTTTCCTTGCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS TCA 72 bp | TGTGACCACCTGTACACGAAGCACTGTTGGCAGTTATaGCACAAGGCTGGCCATTGGTATGTGAGAAACAGG | + |
|
Preference number: 6 (lower is better) Translates to: CDHLYTKHCWQL*HKAGHWYVRNR Trigger: CCTGTTTCTCACATACCAATGGCCAGCCTTGTGTCATAACTGCCAACAGTGCTTCGTGTACAGGTGGTCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS GCA 72 bp | AATAATCTTCCTGCGCTGAATCTCGAAGTAAAAAGGTaGCCTCTGGCTTTCCTTCCAGCAGAGCTTCGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: NNLPALNLEVKR*PLAFLPAELRL Trigger: CAGCCGAAGCTCTGCTGGAAGGAAAGCCAGAGGGCACCTTTTTACTTCGAGATTCAGCGCAGGAAGATTATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS CCA 72 bp | AAGCCCTGGAGAGTGTCGGCCACTACAATTCTTTATTaGAAAACACTGCCCCACCGCATCTTGCAGTTTCTG | + |
|
Preference number: 6 (lower is better) Translates to: KPWRVSATTILY*KTLPHRILQFL Trigger: CAGAAACTGCAAGATGCGGTGGGGCAGTGTTTTCCAATAAAGAATTGTAGTGGCCGACACTCTCCAGGGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065562.6 ENSMUST00000227413.2 |
||
| CDS CAA 72 bp | GAAGCCCTGGAGAGTGTCGGCCACTACAATTCTTTATaGGAAAACACTGCCCCACCGCATCTTGCAGTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: EALESVGHYNSL*ENTAPPHLAVS Trigger: AGAAACTGCAAGATGCGGTGGGGCAGTGTTTTCCAATAAAGAATTGTAGTGGCCGACACTCTCCAGGGCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065562.6 ENSMUST00000227413.2 |
||
| CDS TCA 72 bp | CAGGGTATGTCATCTTCTGTGTTTCTTCGTTTCAGCTaGGCATCTCTCAGTTTCCTCTCAGACAGGTCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: QGMSSSVFLRFS*ASLSFLSDRSA Trigger: TGCAGACCTGTCTGAGAGGAAACTGAGAGATGCTCAGCTGAAACGAAGAAACACAGAAGATGACATACCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS CCA 72 bp | GTACACGAAGCACTGTTGGCAGTTATGACACAAGGCTaGCCATTGGTATGTGAGAAACAGGGTATGTCATCT | + |
|
Preference number: 6 (lower is better) Translates to: VHEALLAVMTQG*PLVCEKQGMSS Trigger: AGATGACATACCCTGTTTCTCACATACCAATGGCCAGCCTTGTGTCATAACTGCCAACAGTGCTTCGTGTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS CAA 90 bp | CTCAGTTTCCTCTCAGACAGGTCTGCACTCACCCATTCATCTGAGTaGGGACTCATAGGAACAGTGTGTCGTTTAATAAAATGCCACCTA | + |
|
Preference number: 6 (lower is better) Translates to: LSFLSDRSALTHSSE*GLIGTVCRLIKCHL Trigger: TAGGTGGCATTTTATTAAACGACACACTGTTCCTATGAGTCCCAACTCAGATGAATGGGTGAGTGCAGACCTGTCTGAGAGGAAACTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS TCA 72 bp | TTTCCTCTCAGACAGGTCTGCACTCACCCATTCATCTaGGTTGGGACTCATAGGAACAGTGTGTCGTTTAAT | + |
|
Preference number: 6 (lower is better) Translates to: FPLRQVCTHPFI*VGTHRNSVSFN Trigger: ATTAAACGACACACTGTTCCTATGAGTCCCAACTCAGATGAATGGGTGAGTGCAGACCTGTCTGAGAGGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
||
| CDS TCA 72 bp | TTAAGGGATCGGCCTAAAAATCTATGCCCACAGGAATaGTCTAAGTCCAACTCAATGGACGAACAGCTAAGC | + |
|
Preference number: 6 (lower is better) Translates to: LRDRPKNLCPQE*SKSNSMDEQLS Trigger: GCTTAGCTGTTCGTCCATTGAGTTGGACTTAGATCATTCCTGTGGGCATAGATTTTTAGGCCGATCCCTTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065562.6 ENSMUST00000227413.2 |
||
| CDS GCA 72 bp | GTCGTACAATTACAAATAACCGTTCTGCAAATATGCTaGAAGGAAAAGGGGAACGTCCGGATTAAGGGAGTG | + |
|
Preference number: 6 (lower is better) Translates to: VVQLQITVLQIC*KEKGNVRIKGV Trigger: CACTCCCTTAATCCGGACGTTCCCCTTTTCCTTGCAGCATATTTGCAGAACGGTTATTTGTAATTGTACGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| CDS CAA 72 bp | CTCTCAGACAGGTCTGCACTCACCCATTCATCTGAGTaGGGACTCATAGGAACAGTGTGTCGTTTAATAAAA | + |
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Preference number: 6 (lower is better) Translates to: LSDRSALTHSSE*GLIGTVCRLIK Trigger: TTTTATTAAACGACACACTGTTCCTATGAGTCCCAACTCAGATGAATGGGTGAGTGCAGACCTGTCTGAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| CDS TCA 72 bp | TCTGGAGCTTGTGCACAGCGTTATAATTTCATCCTCTaGATCCATGTCACTGTCTTCTATGCTGTTGTTTGT | + |
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Preference number: 6 (lower is better) Translates to: SGACAQRYNFIL*IHVTVFYAVVC Trigger: ACAAACAACAGCATAGAAGACAGTGACATGGATTCAGAGGATGAAATTATAACGCTGTGCACAAGCTCCAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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| CDS CAA 72 bp | TCATCCTCTGAATCCATGTCACTGTCTTCTATGCTGTaGTTTGTGACCAAGTTCATCATAGAACCAGTTATG | + |
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Preference number: 6 (lower is better) Translates to: SSSESMSLSSML*FVTKFIIEPVM Trigger: CATAACTGGTTCTATGATGAACTTGGTCACAAACAACAGCATAGAAGACAGTGACATGGATTCAGAGGATGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065562.6 |
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