Pregenerated sensors for SOCS3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053113Ensembl transcript IDs: ENSMUST00000054002.4
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTCACTGGGAGCTACCGACCGTTGGGGCTGGATTTTTGTGCTTGTaGCATGTGCCTCGGAGGAGAGGCGACCGACCGACCCAGGCCCCC | + |
|
Preference number: 1 (lower is better) Translates to: AHWELPTVGAGFLCL*HVPRRRGDRPTQAP Trigger: GGGGGCCTGGGTCGGTCGGTCGCCTCTCCTCCGAGGCACATGGCACAAGCACAAAAATCCAGCCCCAACGGTCGGTAGCTCCCAGTGAGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 90 bp | CAGCTCTACTCTGCGGGAGTGGAGGGCCTGAGGAAGAAGCCAATCTaGCCCTGGCTCACTGGGAGCTACCGACCGTTGGGGCTGGATTTT | + |
|
Preference number: 1 (lower is better) Translates to: QLYSAGVEGLRKKPI*PWLTGSYRPLGLDF Trigger: AAAATCCAGCCCCAACGGTCGGTAGCTCCCAGTGAGCCAGGGGCAGATTGGCTTCTTCCTCAGGCCCTCCACTCCCGCAGAGTAGAGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 90 bp | GGCGGCCAGCTCACCAGCCTCATCTGTCTCCCTTCTAAATGCTACTaGCTCTTCACAACGGGGAGGGTTCTGGGGTGCAAGGGATCTGCG | + |
|
Preference number: 1 (lower is better) Translates to: GGQLTSLICLPSKCY*LFTTGRVLGCKGSA Trigger: CGCAGATCCCTTGCACCCCAGAACCCTCCCCGTTGTGAAGAGGCAGTAGCATTTAGAAGGGAGACAGATGAGGCTGGTGAGCTGGCCGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CCA 90 bp | GGAAGAAGCCAATCTGCCCCTGGCTCACTGGGAGCTACCGACCGTTaGGGCTGGATTTTTGTGCTTGTGCCATGTGCCTCGGAGGAGAGG | + |
|
Preference number: 1 (lower is better) Translates to: GRSQSAPGSLGATDR*GWIFVLVPCASEER Trigger: CCTCTCCTCCGAGGCACATGGCACAAGCACAAAAATCCAGCCCCAACGGTCGGTAGCTCCCAGTGAGCCAGGGGCAGATTGGCTTCTTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CCA 90 bp | ACTGGGTCTCTCCCCTGCAGCCACTTCCCCTGGCCTGTAGCCACCTaGGTGAATCCCTCAACTCTCTGCCTATTGGCTGTGTTTGGCTCC | + |
|
Preference number: 1 (lower is better) Translates to: TGSLPCSHFPWPVAT*VNPSTLCLLAVFGS Trigger: GGAGCCAAACACAGCCAATAGGCAGAGAGTTGAGGGATTCACCCAGGTGGCTACAGGCCAGGGGAAGTGGCTGCAGGGGAGAGACCCAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 90 bp | CTGCTCCAGGGAAACCTGGGCTCCAAGATGGCTCATCTGTTGATCTaGCTCCCTTCGGTGTTGGAAAAGGCGGCCAGCTCACCAGCCTCA | + |
|
Preference number: 1 (lower is better) Translates to: LLQGNLGSKMAHLLI*LPSVLEKAASSPAS Trigger: TGAGGCTGGTGAGCTGGCCGCCTTTTCCAACACCGAAGGGAGGCAGATCAACAGATGAGCCATCTTGGAGCCCAGGTTTCCCTGGAGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR TCA 90 bp | TCCATCTGCTCCAGGGAAACCTGGGCTCCAAGATGGCTCATCTGTTaGTCTGCCTCCCTTCGGTGTTGGAAAAGGCGGCCAGCTCACCAG | + |
|
Preference number: 1 (lower is better) Translates to: SICSRETWAPRWLIC*SASLRCWKRRPAHQ Trigger: CTGGTGAGCTGGCCGCCTTTTCCAACACCGAAGGGAGGCAGATCAACAGATGAGCCATCTTGGAGCCCAGGTTTCCCTGGAGCAGATGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR TCA 90 bp | GGGCTGTGCAGGGCCTGGAGGCTCTCGGACCTACTGACCGAGAGATaGCTAGGACTGGCCAATGTCTTCCCAGTGTTAACTCAGGAGTCT | + |
|
Preference number: 1 (lower is better) Translates to: GLCRAWRLSDLLTER*LGLANVFPVLTQES Trigger: AGACTCCTGAGTTAACACTGGGAAGACATTGGCCAGTCCTAGTCATCTCTCGGTCAGTAGGTCCGAGAGCCTCCAGGCCCTGCACAGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 90 bp | CACTTCCCCTGGCCTGTAGCCACCTGGGTGAATCCCTCAACTCTCTaGCTATTGGCTGTGTTTGGCTCCTTGTGTGCCAATCCCCATCCC | + |
|
Preference number: 1 (lower is better) Translates to: HFPWPVATWVNPSTL*LLAVFGSLCANPHP Trigger: GGGATGGGGATTGGCACACAAGGAGCCAAACACAGCCAATAGGCAGAGAGTTGAGGGATTCACCCAGGTGGCTACAGGCCAGGGGAAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CCA 90 bp | CAAGGGATCTGCGAGGTTTCATTAGCTGCCCCATGGAGAGGAGCCTaGCACCAGTATAGCTCTCTTCAGGTCACCCCTTGCCACTCTCCC | + |
|
Preference number: 1 (lower is better) Translates to: QGICEVSLAAPWRGA*HQYSSLQVTPCHSP Trigger: GGGAGAGTGGCAAGGGGTGACCTGAAGAGAGCTATACTGGTGCCAGGCTCCTCTCCATGGGGCAGCTAATGAAACCTCGCAGATCCCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 90 bp | GAATCCCTCAACTCTCTGCCTATTGGCTGTGTTTGGCTCCTTGTGTaGCAATCCCCATCCCTGGGACAGAGGGCATTTAAGGCGAGTCTC | + |
|
Preference number: 1 (lower is better) Translates to: ESLNSLPIGCVWLLV*QSPSLGQRAFKASL Trigger: GAGACTCGCCTTAAATGCCCTCTGTCCCAGGGATGGGGATTGGCACACAAGGAGCCAAACACAGCCAATAGGCAGAGAGTTGAGGGATTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CCA 90 bp | TTGCCACTCTCCCCAGAGCCAGGAGCCACCACTCCTCACCTAGGTTaGGCAGTGGGAGTGGTTATTTCTTTGGCCAGCATAAAAACCCTT | + |
|
Preference number: 1 (lower is better) Translates to: LPLSPEPGATTPHLG*AVGVVISLASIKTL Trigger: AAGGGTTTTTATGCTGGCCAAAGAAATAACCACTCCCACTGCCCAACCTAGGTGAGGAGTGGTGGCTCCTGGCTCTGGGGAGAGTGGCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 90 bp | TCAAAGCGCAAACAAGTTCCAGCGGGAAAGTTTGAAGATTCCCCTTaGAGTTCTAAGTTCAACACTTGGAGGTGTCCCCACCTCCCTTGG | + |
|
Preference number: 1 (lower is better) Translates to: SKRKQVPAGKFEDSP*SSKFNTWRCPHLPW Trigger: CCAAGGGAGGTGGGGACACCTCCAAGTGTTGAACTTAGAACTGCAAGGGGAATCTTCAAACTTTCCCGCTGGAACTTGTTTGCGCTTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR CCA 90 bp | CCCTTGCCACTCTCCCCAGAGCCAGGAGCCACCACTCCTCACCTAGGTTGGGCACTGCCCCTGGCTCACTaGGAGCTACCGACCGTTGGG | + |
|
Preference number: 2 (lower is better) Translates to: PLPLSPEPGATTPHLGWALPLAH*ELPTVG Trigger: CCCAACGGTCGGTAGCTCCCAGTGAGCCAGGGGCAG...TGCCCAACCTAGGTGAGGAGTGGTGGCTCCTGGCTCTGGGGAGAGTGGCAAGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CAA 90 bp | CTGGCTCACTGGGAGCTACCGACCGTTGGGGCTGGATTTTTGTGCTaGTGCCATGTGCCTCGGAGGAGAGGCGACCGACCGACCCAGGCC | + |
|
Preference number: 2 (lower is better) Translates to: LAHWELPTVGAGFLC*CHVPRRRGDRPTQA Trigger: GGCCTGGGTCGGTCGGTCGCCTCTCCTCCGAGGCACATGGCACAAGCACAAAAATCCAGCCCCAACGGTCGGTAGCTCCCAGTGAGCCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR TCA 90 bp | CAAAGCAGAACCCTCCATCTGCTCCAGGGAAACCTGGGCTCCAAGATGGCTCATCGGGAGTGGAGGGCCTaGGGAAGAAGCCAATCTGCC | + |
|
Preference number: 2 (lower is better) Translates to: QSRTLHLLQGNLGSKMAHREWRA*GRSQSA Trigger: GGCAGATTGGCTTCTTCCTCAGGCCCTCCACTCCCG...ATGAGCCATCTTGGAGCCCAGGTTTCCCTGGAGCAGATGGAGGGTTCTGCTTTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR CCA 90 bp | CCCTTGCCACTCTCCCCAGAGCCAGGAGCCACCACTCCTCACCTAGGTTGGGCATCTAAGTTCAACACTTaGAGGTGTCCCCACCTCCCT | + |
|
Preference number: 2 (lower is better) Translates to: PLPLSPEPGATTPHLGWASKFNT*RCPHLP Trigger: AGGGAGGTGGGGACACCTCCAAGTGTTGAACTTAGA...TGCCCAACCTAGGTGAGGAGTGGTGGCTCCTGGCTCTGGGGAGAGTGGCAAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR CCA 90 bp | AATCCCTCAACTCTCTGCCTATTGGCTGTGTTTGGCTCCTTGTGTGCCAATCCCTGTCCCCACCTCCCTTaGGAAGCAGAGGGGGTGTGG | + |
|
Preference number: 2 (lower is better) Translates to: NPSTLCLLAVFGSLCANPCPHLP*EAEGVW Trigger: CCACACCCCCTCTGCTTCCCAAGGGAGGTGGGGACA...GGGATTGGCACACAAGGAGCCAAACACAGCCAATAGGCAGAGAGTTGAGGGATT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR GCA 90 bp | CTGGCCTGTAGCCACCTGGGTGAATCCCTCAACTCTCTGCCTATTGGCTGTGTTGGGGCTGGATTTTTGTaGTTGTGCCATGTGCCTCGG | + |
|
Preference number: 2 (lower is better) Translates to: LACSHLGESLNSLPIGCVGAGFL*LCHVPR Trigger: CCGAGGCACATGGCACAAGCACAAAAATCCAGCCCC...AACACAGCCAATAGGCAGAGAGTTGAGGGATTCACCCAGGTGGCTACAGGCCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR GCA 90 bp | CAAAGCAGAACCCTCCATCTGCTCCAGGGAAACCTGGGCTCCAAGATGGCTCATGGGGTGCAAGGGATCTaGGAGGTTTCATTAGCTGCC | + |
|
Preference number: 2 (lower is better) Translates to: QSRTLHLLQGNLGSKMAHGVQGI*EVSLAA Trigger: GGCAGCTAATGAAACCTCGCAGATCCCTTGCACCCC...ATGAGCCATCTTGGAGCCCAGGTTTCCCTGGAGCAGATGGAGGGTTCTGCTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR CCA 90 bp | CAGAGGGCATTTAAGGCGAGTCTCCTAGCCCCACATAGGAGAGACAAAGCAGAACCAGGCCAGGCCGGCTaGCTCCACTTGAAAGAAGCT | + |
|
Preference number: 2 (lower is better) Translates to: QRAFKASLLAPHRRDKAEPGQAG*LHLKEA Trigger: AGCTTCTTTCAAGTGGAGCCAGCCGGCCTGGCCTGG...TTCTGCTTTGTCTCTCCTATGTGGGGCTAGGAGACTCGCCTTAAATGCCCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR GCA 90 bp | AATCCCTCAACTCTCTGCCTATTGGCTGTGTTTGGCTCCTTGTGTGCCAATCCCGGGAGGGTTCTGGGGTaGAAGGGATCTGCGAGGTTT | + |
|
Preference number: 2 (lower is better) Translates to: NPSTLCLLAVFGSLCANPGRVLG*KGSARF Trigger: AAACCTCGCAGATCCCTTGCACCCCAGAACCCTCCC...GGGATTGGCACACAAGGAGCCAAACACAGCCAATAGGCAGAGAGTTGAGGGATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR TCA 90 bp | CAAAGCAGAACCCTCCATCTGCTCCAGGGAAACCTGGGCTCCAAGATGGCTCATCCAGGTGCCTGCTCTTaGTCAAACCAAATCAAAGCG | + |
|
Preference number: 2 (lower is better) Translates to: QSRTLHLLQGNLGSKMAHPGACS*SNQIKA Trigger: CGCTTTGATTTGGTTTGATCAAGAGCAGGCACCTGG...ATGAGCCATCTTGGAGCCCAGGTTTCCCTGGAGCAGATGGAGGGTTCTGCTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR GCA 90 bp | GTGTGCCAATCCCCATCCCTGGGACAGAGGGCATTTAAGGCGAGTCTCCTAGCCTGTCTCCCTTCTAAATaGTACTGCCTCTTCACAACG | + |
|
Preference number: 2 (lower is better) Translates to: VCQSPSLGQRAFKASLLACLPSK*YCLFTT Trigger: CGTTGTGAAGAGGCAGTAGCATTTAGAAGGGAGACA...GGCTAGGAGACTCGCCTTAAATGCCCTCTGTCCCAGGGATGGGGATTGGCACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR CCA 90 bp | CTGGCCTGTAGCCACCTGGGTGAATCCCTCAACTCTCTGCCTATTGGCTGTGTTGTTGGGCAGTGGGAGTaGTTATTTCTTTGGCCAGCA | + |
|
Preference number: 2 (lower is better) Translates to: LACSHLGESLNSLPIGCVVGQWE*LFLWPA Trigger: TGCTGGCCAAAGAAATAACCACTCCCACTGCCCAAC...AACACAGCCAATAGGCAGAGAGTTGAGGGATTCACCCAGGTGGCTACAGGCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR GCA 90 bp | CAGAGGGCATTTAAGGCGAGTCTCCTAGCCCCACATAGGAGAGACAAAGCAGAATTTGAAGATTCCCCTTaGAGTTCTAAGTTCAACACT | + |
|
Preference number: 2 (lower is better) Translates to: QRAFKASLLAPHRRDKAEFEDSP*SSKFNT Trigger: AGTGTTGAACTTAGAACTGCAAGGGGAATCTTCAAA...TTCTGCTTTGTCTCTCCTATGTGGGGCTAGGAGACTCGCCTTAAATGCCCTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CAA 90 bp | TTGATCAAACCAAATCAAAGCGCAAACAAGTTCCAGCGGGAAAGTTaGAAGATTCCCCTTGCAGTTCTAAGTTCAACACTTGGAGGTGTC | + |
|
Preference number: 2 (lower is better) Translates to: LIKPNQSANKFQRES*KIPLAVLSSTLGGV Trigger: GACACCTCCAAGTGTTGAACTTAGAACTGCAAGGGGAATCTTCAAACTTTCCCGCTGGAACTTGTTTGCGCTTTGATTTGGTTTGATCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR TCA 72 bp | GGTCCTGCCAGCTCTACTCTGCGGGAGTGGAGGGCCTaGGGAAGAAGCCAATCTGCCCCTGGCTCACTGGGA | + |
|
Preference number: 3 (lower is better) Translates to: GPASSTLREWRA*GRSQSAPGSLG Trigger: TCCCAGTGAGCCAGGGGCAGATTGGCTTCTTCCTCAGGCCCTCCACTCCCGCAGAGTAGAGCTGGCAGGACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CCA 72 bp | GGAGTGGAGGGCCTGAGGAAGAAGCCAATCTGCCCCTaGCTCACTGGGAGCTACCGACCGTTGGGGCTGGAT | + |
|
Preference number: 3 (lower is better) Translates to: GVEGLRKKPICP*LTGSYRPLGLD Trigger: ATCCAGCCCCAACGGTCGGTAGCTCCCAGTGAGCCAGGGGCAGATTGGCTTCTTCCTCAGGCCCTCCACTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 72 bp | GCCTGGCACCAGTATAGCTCTCTTCAGGTCACCCCTTaGCACTCTCCCCAGAGCCAGGAGCCACCACTCCTC | + |
|
Preference number: 3 (lower is better) Translates to: AWHQYSSLQVTP*HSPQSQEPPLL Trigger: GAGGAGTGGTGGCTCCTGGCTCTGGGGAGAGTGGCAAGGGGTGACCTGAAGAGAGCTATACTGGTGCCAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 72 bp | CACTGGGAGCTACCGACCGTTGGGGCTGGATTTTTGTaGTTGTGCCATGTGCCTCGGAGGAGAGGCGACCGA | + |
|
Preference number: 3 (lower is better) Translates to: HWELPTVGAGFL*LCHVPRRRGDR Trigger: TCGGTCGCCTCTCCTCCGAGGCACATGGCACAAGCACAAAAATCCAGCCCCAACGGTCGGTAGCTCCCAGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CCA 72 bp | CTTGTCAAAGGTATTGTCCCACCAGGCCAGGCCGGCTaGCTCCACTTGAAAGAAGCTGGAGCTGGGGGAGGG | + |
|
Preference number: 3 (lower is better) Translates to: LVKGIVPPGQAG*LHLKEAGAGGG Trigger: CCCTCCCCCAGCTCCAGCTTCTTTCAAGTGGAGCCAGCCGGCCTGGCCTGGTGGGACAATACCTTTGACAAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CCA 72 bp | CTCCCCTGCAGCCACTTCCCCTGGCCTGTAGCCACCTaGGTGAATCCCTCAACTCTCTGCCTATTGGCTGTG | + |
|
Preference number: 3 (lower is better) Translates to: LPCSHFPWPVAT*VNPSTLCLLAV Trigger: CACAGCCAATAGGCAGAGAGTTGAGGGATTCACCCAGGTGGCTACAGGCCAGGGGAAGTGGCTGCAGGGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR CAA 90 bp | CAAAGCAGAACCCTCCATCTGCTCCAGGGAAACCTGGGCTCCAAGATGGCTCATGTGTCCCCACCTCCCTaGGGAAGCAGAGGGGGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: QSRTLHLLQGNLGSKMAHVSPPP*GSRGGV Trigger: CACACCCCCTCTGCTTCCCAAGGGAGGTGGGGACAC...ATGAGCCATCTTGGAGCCCAGGTTTCCCTGGAGCAGATGGAGGGTTCTGCTTTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CCA 72 bp | CAATCTGCCCCTGGCTCACTGGGAGCTACCGACCGTTaGGGCTGGATTTTTGTGCTTGTGCCATGTGCCTCG | + |
|
Preference number: 3 (lower is better) Translates to: QSAPGSLGATDR*GWIFVLVPCAS Trigger: CGAGGCACATGGCACAAGCACAAAAATCCAGCCCCAACGGTCGGTAGCTCCCAGTGAGCCAGGGGCAGATTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR TCA 72 bp | GGCCAATGTCTTCCCAGTGTTAACTCAGGAGTCTCCTaGGTGACTGGGTCTCTCCCCTGCAGCCACTTCCCC | + |
|
Preference number: 3 (lower is better) Translates to: GQCLPSVNSGVS*VTGSLPCSHFP Trigger: GGGGAAGTGGCTGCAGGGGAGAGACCCAGTCACTCAGGAGACTCCTGAGTTAACACTGGGAAGACATTGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 72 bp | GGCCAGCTCACCAGCCTCATCTGTCTCCCTTCTAAATaGTACTGCCTCTTCACAACGGGGAGGGTTCTGGGG | + |
|
Preference number: 3 (lower is better) Translates to: GQLTSLICLPSK*YCLFTTGRVLG Trigger: CCCCAGAACCCTCCCCGTTGTGAAGAGGCAGTAGCATTTAGAAGGGAGACAGATGAGGCTGGTGAGCTGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR TCA 72 bp | TCCAGGGAAACCTGGGCTCCAAGATGGCTCATCTGTTaGTCTGCCTCCCTTCGGTGTTGGAAAAGGCGGCCA | + |
|
Preference number: 3 (lower is better) Translates to: SRETWAPRWLIC*SASLRCWKRRP Trigger: TGGCCGCCTTTTCCAACACCGAAGGGAGGCAGATCAACAGATGAGCCATCTTGGAGCCCAGGTTTCCCTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 72 bp | GGAAACCTGGGCTCCAAGATGGCTCATCTGTTGATCTaGCTCCCTTCGGTGTTGGAAAAGGCGGCCAGCTCA | + |
|
Preference number: 3 (lower is better) Translates to: GNLGSKMAHLLI*LPSVLEKAASS Trigger: TGAGCTGGCCGCCTTTTCCAACACCGAAGGGAGGCAGATCAACAGATGAGCCATCTTGGAGCCCAGGTTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 72 bp | GCCCCACATAGGAGAGACAAAGCAGAACCCTCCATCTaGTCCAGGGAAACCTGGGCTCCAAGATGGCTCATC | + |
|
Preference number: 3 (lower is better) Translates to: APHRRDKAEPSI*SRETWAPRWLI Trigger: GATGAGCCATCTTGGAGCCCAGGTTTCCCTGGAGCAGATGGAGGGTTCTGCTTTGTCTCTCCTATGTGGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CCA 72 bp | TGCGAGGTTTCATTAGCTGCCCCATGGAGAGGAGCCTaGCACCAGTATAGCTCTCTTCAGGTCACCCCTTGC | + |
|
Preference number: 3 (lower is better) Translates to: CEVSLAAPWRGA*HQYSSLQVTPC Trigger: GCAAGGGGTGACCTGAAGAGAGCTATACTGGTGCCAGGCTCCTCTCCATGGGGCAGCTAATGAAACCTCGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR CAA 90 bp | GTGTGCCAATCCCCATCCCTGGGACAGAGGGCATTTAAGGCGAGTCTCCTAGCCCCCAGGTGCCTGCTCTaGATCAAACCAAATCAAAGC | + |
|
Preference number: 3 (lower is better) Translates to: VCQSPSLGQRAFKASLLAPRCLL*IKPNQS Trigger: GCTTTGATTTGGTTTGATCAAGAGCAGGCACCTGGG...GGCTAGGAGACTCGCCTTAAATGCCCTCTGTCCCAGGGATGGGGATTGGCACAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 72 bp | CTCACCAGCCTCATCTGTCTCCCTTCTAAATGCTACTaGCTCTTCACAACGGGGAGGGTTCTGGGGTGCAAG | + |
|
Preference number: 3 (lower is better) Translates to: LTSLICLPSKCY*LFTTGRVLGCK Trigger: CTTGCACCCCAGAACCCTCCCCGTTGTGAAGAGGCAGTAGCATTTAGAAGGGAGACAGATGAGGCTGGTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CCA 72 bp | GGTGAATCCCTCAACTCTCTGCCTATTGGCTGTGTTTaGCTCCTTGTGTGCCAATCCCCATCCCTGGGACAG | + |
|
Preference number: 3 (lower is better) Translates to: GESLNSLPIGCV*LLVCQSPSLGQ Trigger: CTGTCCCAGGGATGGGGATTGGCACACAAGGAGCCAAACACAGCCAATAGGCAGAGAGTTGAGGGATTCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 72 bp | TGGCCTGTAGCCACCTGGGTGAATCCCTCAACTCTCTaGCTATTGGCTGTGTTTGGCTCCTTGTGTGCCAAT | + |
|
Preference number: 3 (lower is better) Translates to: WPVATWVNPSTL*LLAVFGSLCAN Trigger: ATTGGCACACAAGGAGCCAAACACAGCCAATAGGCAGAGAGTTGAGGGATTCACCCAGGTGGCTACAGGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CCA 72 bp | CTAAATGCTACTGCCTCTTCACAACGGGGAGGGTTCTaGGGTGCAAGGGATCTGCGAGGTTTCATTAGCTGC | + |
|
Preference number: 3 (lower is better) Translates to: LNATASSQRGGF*GARDLRGFISC Trigger: GCAGCTAATGAAACCTCGCAGATCCCTTGCACCCCAGAACCCTCCCCGTTGTGAAGAGGCAGTAGCATTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 72 bp | AACTCTCTGCCTATTGGCTGTGTTTGGCTCCTTGTGTaGCAATCCCCATCCCTGGGACAGAGGGCATTTAAG | + |
|
Preference number: 3 (lower is better) Translates to: NSLPIGCVWLLV*QSPSLGQRAFK Trigger: CTTAAATGCCCTCTGTCCCAGGGATGGGGATTGGCACACAAGGAGCCAAACACAGCCAATAGGCAGAGAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CCA 72 bp | TTTGAAGATTCCCCTTGCAGTTCTAAGTTCAACACTTaGAGGTGTCCCCACCTCCCTTGGGAAGCAGAGGGG | + |
|
Preference number: 3 (lower is better) Translates to: FEDSPCSSKFNT*RCPHLPWEAEG Trigger: CCCCTCTGCTTCCCAAGGGAGGTGGGGACACCTCCAAGTGTTGAACTTAGAACTGCAAGGGGAATCTTCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR-3UTR CAA 90 bp | AGGTTGGGCAGTGGGAGTGGTTATTTCTTTGGCCAGCATAAAAACCCTTCACACGTTGGGGCTGGATTTTaGTGCTTGTGCCATGTGCCT | + |
|
Preference number: 3 (lower is better) Translates to: RLGSGSGYFFGQHKNPSHVGAGF*CLCHVP Trigger: AGGCACATGGCACAAGCACAAAAATCCAGCCCCAAC...GTGTGAAGGGTTTTTATGCTGGCCAAAGAAATAACCACTCCCACTGCCCAACCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR GCA 72 bp | AAACAAGTTCCAGCGGGAAAGTTTGAAGATTCCCCTTaGAGTTCTAAGTTCAACACTTGGAGGTGTCCCCAC | + |
|
Preference number: 3 (lower is better) Translates to: KQVPAGKFEDSP*SSKFNTWRCPH Trigger: GTGGGGACACCTCCAAGTGTTGAACTTAGAACTGCAAGGGGAATCTTCAAACTTTCCCGCTGGAACTTGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CCA 90 bp | GTGTGCCAATCCCCATCCCTGGGACAGAGGGCATTTAAGGCGAGTCTCCTAGCCGTCGAAGCGGGGAACTaGCTGCGTGCTTCGGGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: VCQSPSLGQRAFKASLLAVEAGN*LRASGV Trigger: GACCCCCGAAGCACGCAGCCAGTTCCCCGCTTCGAC...GGCTAGGAGACTCGCCTTAAATGCCCTCTGTCCCAGGGATGGGGATTGGCACAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CCA 90 bp | TTTTTGTGCTTGTGCCATGTGCCTCGGAGGAGAGGCGACCGACCGACCCAGGCCCCAGGAACTCCCGAATaGGTCCAGGCAGCTGGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: FLCLCHVPRRRGDRPTQAPGTPE*VQAAGS Trigger: TGACCCAGCTGCCTGGACCCATTCGGGAGTTCCTGG...GGCCTGGGTCGGTCGGTCGCCTCTCCTCCGAGGCACATGGCACAAGCACAAAAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CAA 72 bp | TGGGAGCTACCGACCGTTGGGGCTGGATTTTTGTGCTaGTGCCATGTGCCTCGGAGGAGAGGCGACCGACCG | + |
|
Preference number: 4 (lower is better) Translates to: WELPTVGAGFLC*CHVPRRRGDRP Trigger: CGGTCGGTCGCCTCTCCTCCGAGGCACATGGCACAAGCACAAAAATCCAGCCCCAACGGTCGGTAGCTCCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR TCA 90 bp | CCTCACCTAGGTTGGGCAGTGGGAGTGGTTATTTCTTTGGCCAGCATAAAAACCCCGCGGGCTCGGCGCTaGGCAGCAGGTTCGCCTCGC | + |
|
Preference number: 4 (lower is better) Translates to: PHLGWAVGVVISLASIKTPRARR*AAGSPR Trigger: GCGAGGCGAACCTGCTGCTCAGCGCCGAGCCCGCGG...GGTTTTTATGCTGGCCAAAGAAATAACCACTCCCACTGCCCAACCTAGGTGAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CCA 90 bp | TTTTGTGCTTGTGCCATGTGCCTCGGAGGAGAGGCGACCGACCGACCCAGGCCCTTCTTGGTCCCCGACTaGGTCTTGACGCTCAACGTG | + |
|
Preference number: 4 (lower is better) Translates to: FCACAMCLGGEATDRPRPFLVPD*VLTLNV Trigger: CACGTTGAGCGTCAAGACCCAGTCGGGGACCAAGAA...GGGCCTGGGTCGGTCGGTCGCCTCTCCTCCGAGGCACATGGCACAAGCACAAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CAA 72 bp | GCTCACTGGGAGCTACCGACCGTTGGGGCTGGATTTTaGTGCTTGTGCCATGTGCCTCGGAGGAGAGGCGAC | + |
|
Preference number: 4 (lower is better) Translates to: AHWELPTVGAGF*CLCHVPRRRGD Trigger: GTCGCCTCTCCTCCGAGGCACATGGCACAAGCACAAAAATCCAGCCCCAACGGTCGGTAGCTCCCAGTGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR TCA 90 bp | CGTTGGGGCTGGATTTTTGTGCTTGTGCCATGTGCCTCGGAGGAGAGGCGACCGAGTGGTGCACCAGCTTaGGTACACAGTCGAAGCGGG | + |
|
Preference number: 4 (lower is better) Translates to: RWGWIFVLVPCASEERRPSGAPA*VHSRSG Trigger: CCCGCTTCGACTGTGTACTCAAGCTGGTGCACCACT...CGGTCGCCTCTCCTCCGAGGCACATGGCACAAGCACAAAAATCCAGCCCCAACG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR GCA 90 bp | GAGCCAGGAGCCACCACTCCTCACCTAGGTTGGGCAGTGGGAGTGGTTATTTCTCCCCCTCACACTGGATaGGTAGGTTCTTGGTCCCCG | + |
|
Preference number: 4 (lower is better) Translates to: EPGATTPHLGWAVGVVISPPHTG*VGSWSP Trigger: CGGGGACCAAGAACCTACGCATCCAGTGTGAGGGGG...AGAAATAACCACTCCCACTGCCCAACCTAGGTGAGGAGTGGTGGCTCCTGGCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR GCA 90 bp | AATCCCTCAACTCTCTGCCTATTGGCTGTGTTTGGCTCCTTGTGTGCCAATCCCGGTACTCCCGGGGAGTaGCTGGGCAGGTGGCTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: NPSTLCLLAVFGSLCANPGTPGE*LGRWLL Trigger: GAGCAGCCACCTGCCCAGGCACTCCCCGGGAGTACC...GGGATTGGCACACAAGGAGCCAAACACAGCCAATAGGCAGAGAGTTGAGGGATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CCA 90 bp | CGTTGGGGCTGGATTTTTGTGCTTGTGCCATGTGCCTCGGAGGAGAGGCGACCGGCGTTCACCACCAGCTaGTACTCGCTTTTGGAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: RWGWIFVLVPCASEERRPAFTTS*YSLLEL Trigger: CAGCTCCAAAAGCGAGTACCAGCTGGTGGTGAACGC...CGGTCGCCTCTCCTCCGAGGCACATGGCACAAGCACAAAAATCCAGCCCCAACG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CCA 90 bp | CGTTGGGGCTGGATTTTTGTGCTTGTGCCATGTGCCTCGGAGGAGAGGCGACCGTGTAGTAAGCTCTCTTaGGGGTACTCCCGGGGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: RWGWIFVLVPCASEERRPCSKLS*GYSRGV Trigger: CACTCCCCGGGAGTACCCCCAAGAGAGCTTACTACA...CGGTCGCCTCTCCTCCGAGGCACATGGCACAAGCACAAAAATCCAGCCCCAACG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR GCA 90 bp | GAGCCAGGAGCCACCACTCCTCACCTAGGTTGGGCAGTGGGAGTGGTTATTTCTTCTGCAGCGAAAAGCTaGCCCCCTCACACTGGATGC | + |
|
Preference number: 4 (lower is better) Translates to: EPGATTPHLGWAVGVVISSAAKS*PPHTGC Trigger: GCATCCAGTGTGAGGGGGGCAGCTTTTCGCTGCAGA...AGAAATAACCACTCCCACTGCCCAACCTAGGTGAGGAGTGGTGGCTCCTGGCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CCA 90 bp | GAGCCAGGAGCCACCACTCCTCACCTAGGTTGGGCAGTGGGAGTGGTTATTTCTCTCAACGTGAAGAAGTaGCGCTGGTCCGAGCTGTCG | + |
|
Preference number: 4 (lower is better) Translates to: EPGATTPHLGWAVGVVISLNVKK*RWSELS Trigger: CGACAGCTCGGACCAGCGCCACTTCTTCACGTTGAG...AGAAATAACCACTCCCACTGCCCAACCTAGGTGAGGAGTGGTGGCTCCTGGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CCA 90 bp | GTGTGCCAATCCCCATCCCTGGGACAGAGGGCATTTAAGGCGAGTCTCCTAGCCTTCCGACAAAGATGCTaGAGGGTGGCCACGTTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: VCQSPSLGQRAFKASLLAFRQRC*RVATLE Trigger: CTCCAACGTGGCCACCCTCCAGCATCTTTGTCGGAA...GGCTAGGAGACTCGCCTTAAATGCCCTCTGTCCCAGGGATGGGGATTGGCACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CAA 72 bp | CTCCAGGGAAACCTGGGCTCCAAGATGGCTCATCTGTaGATCTGCCTCCCTTCGGTGTTGGAAAAGGCGGCC | + |
|
Preference number: 4 (lower is better) Translates to: LQGNLGSKMAHL*ICLPSVLEKAA Trigger: GGCCGCCTTTTCCAACACCGAAGGGAGGCAGATCAACAGATGAGCCATCTTGGAGCCCAGGTTTCCCTGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR GCA 90 bp | GAGCCAGGAGCCACCACTCCTCACCTAGGTTGGGCAGTGGGAGTGGTTATTTCTGTCTTCCGACAAAGATaGTGGAGGGTGGCCACGTTG | + |
|
Preference number: 4 (lower is better) Translates to: EPGATTPHLGWAVGVVISVFRQR*WRVATL Trigger: CAACGTGGCCACCCTCCAGCATCTTTGTCGGAAGAC...AGAAATAACCACTCCCACTGCCCAACCTAGGTGAGGAGTGGTGGCTCCTGGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR GCA 90 bp | CCTCACCTAGGTTGGGCAGTGGGAGTGGTTATTTCTTTGGCCAGCATAAAAACCCGCTCTCCTGCAGCTTaGGCACGGCGTTCACCACCA | + |
|
Preference number: 4 (lower is better) Translates to: PHLGWAVGVVISLASIKTRSPAA*ARRSPP Trigger: TGGTGGTGAACGCCGTGCGCAAGCTGCAGGAGAGCG...GGTTTTTATGCTGGCCAAAGAAATAACCACTCCCACTGCCCAACCTAGGTGAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CCA 90 bp | CAGGTGCCTGCTCTTGATCAAACCAAATCAAAGCGCAAACAAGTTCCAGCGGGAGAGTGCCTGGGCAGGTaGCTGCTCCGGAACTTCGGA | + |
|
Preference number: 4 (lower is better) Translates to: QVPALDQTKSKRKQVPAGECLGR*LLRNFG Trigger: TCCGAAGTTCCGGAGCAGCCACCTGCCCAGGCACTC...TCCCGCTGGAACTTGTTTGCGCTTTGATTTGGTTTGATCAAGAGCAGGCACCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CCA 90 bp | CCTCACCTAGGTTGGGCAGTGGGAGTGGTTATTTCTTTGGCCAGCATAAAAACCGGAGGGTGGCCACGTTaGAGGAGAGAGGTCGGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: PHLGWAVGVVISLASIKTGGWPR*RREVGS Trigger: TGAGCCGACCTCTCTCCTCCAACGTGGCCACCCTCC...GGTTTTTATGCTGGCCAAAGAAATAACCACTCCCACTGCCCAACCTAGGTGAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CAA 72 bp | AAGATGGCTCATCTGTTGATCTGCCTCCCTTCGGTGTaGGAAAAGGCGGCCAGCTCACCAGCCTCATCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: KMAHLLICLPSV*EKAASSPASSV Trigger: GACAGATGAGGCTGGTGAGCTGGCCGCCTTTTCCAACACCGAAGGGAGGCAGATCAACAGATGAGCCATCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CAA 72 bp | GTAGCCACCTGGGTGAATCCCTCAACTCTCTGCCTATaGGCTGTGTTTGGCTCCTTGTGTGCCAATCCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: VATWVNPSTLCL*AVFGSLCANPH Trigger: ATGGGGATTGGCACACAAGGAGCCAAACACAGCCAATAGGCAGAGAGTTGAGGGATTCACCCAGGTGGCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CCA 90 bp | CCTCACCTAGGTTGGGCAGTGGGAGTGGTTATTTCTTTGGCCAGCATAAAAACCGTGAAGAAGTGGCGCTaGTCCGAGCTGTCGCGGATA | + |
|
Preference number: 4 (lower is better) Translates to: PHLGWAVGVVISLASIKTVKKWR*SELSRI Trigger: TATCCGCGACAGCTCGGACCAGCGCCACTTCTTCAC...GGTTTTTATGCTGGCCAAAGAAATAACCACTCCCACTGCCCAACCTAGGTGAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CCA 90 bp | AGGTTGGGCAGTGGGAGTGGTTATTTCTTTGGCCAGCATAAAAACCCTTCACACAAAGGAGGGGGTCCCTaGAGGCGGCATGTAGTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: RLGSGSGYFFGQHKNPSHKGGGP*RRHVVV Trigger: CACCACTACATGCCGCCTCCAGGGACCCCCTCCTTT...GTGTGAAGGGTTTTTATGCTGGCCAAAGAAATAACCACTCCCACTGCCCAACCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR TCA 90 bp | CAGAGGGCATTTAAGGCGAGTCTCCTAGCCCCACATAGGAGAGACAAAGCAGAAAGTCCAGGTGGCCGTTaGCAGTCTTCCGACAAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: QRAFKASLLAPHRRDKAESPGGR*QSSDKD Trigger: ATCTTTGTCGGAAGACTGTCAACGGCCACCTGGACT...TTCTGCTTTGTCTCTCCTATGTGGGGCTAGGAGACTCGCCTTAAATGCCCTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CCA 90 bp | AGGTTGGGCAGTGGGAGTGGTTATTTCTTTGGCCAGCATAAAAACCCTTCACACCGAGGGTTCCGTGGGTaGCAAAGAAAAGGAGGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: RLGSGSGYFFGQHKNPSHRGFRG*QRKGGG Trigger: ACCCCCTCCTTTTCTTTGCCACCCACGGAACCCTCG...GTGTGAAGGGTTTTTATGCTGGCCAAAGAAATAACCACTCCCACTGCCCAACCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR TCA 90 bp | CCTCACCTAGGTTGGGCAGTGGGAGTGGTTATTTCTTTGGCCAGCATAAAAACCAGTGGAGCATCATACTaGTCCAGGAACTCCCGAATG | + |
|
Preference number: 4 (lower is better) Translates to: PHLGWAVGVVISLASIKTSGASY*SRNSRM Trigger: CATTCGGGAGTTCCTGGATCAGTATGATGCTCCACT...GGTTTTTATGCTGGCCAAAGAAATAACCACTCCCACTGCCCAACCTAGGTGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| 3UTR CAA 72 bp | CCTCACCTAGGTTGGGCAGTGGGAGTGGTTATTTCTTaGGCCAGCATAAAAACCCTTCACACACCCTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: PHLGWAVGVVIS*ASIKTLHTPFS Trigger: AGAAAAGGGTGTGTGAAGGGTTTTTATGCTGGCCAAAGAAATAACCACTCCCACTGCCCAACCTAGGTGAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CCA 90 bp | AGGTTCTTGGTCCCCGACTGGGTCTTGACGCTCAACGTGAAGAAGTaGCGCTGGTCCGAGCTGTCGCGGATAAGAAAGGTGCCCGCGGGC | + |
|
Preference number: 5 (lower is better) Translates to: RFLVPDWVLTLNVKK*RWSELSRIRKVPAG Trigger: GCCCGCGGGCACCTTTCTTATCCGCGACAGCTCGGACCAGCGCCACTTCTTCACGTTGAGCGTCAAGACCCAGTCGGGGACCAAGAACCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CAA 90 bp | TTTTTGTGCTTGTGCCATGTGCCTCGGAGGAGAGGCGACCGACCGACCCAGGCCTTGGAGCTGAAGGTCTaGAGGCGCAGGCTGGTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: FLCLCHVPRRRGDRPTQALELKV*RRRLVS Trigger: GGACACCAGCCTGCGCCTCAAGACCTTCAGCTCCAA...GGCCTGGGTCGGTCGGTCGCCTCTCCTCCGAGGCACATGGCACAAGCACAAAAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CAA 90 bp | CTTGCCACTCTCCCCAGAGCCAGGAGCCACCACTCCTCACCTAGGTTGGGCAGTTGGATGCGTAGGTTCTaGGTCCCCGACTGGGTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: LATLPRARSHHSSPRLGSWMRRF*VPDWVL Trigger: CAAGACCCAGTCGGGGACCAAGAACCTACGCATCCA...ACTGCCCAACCTAGGTGAGGAGTGGTGGCTCCTGGCTCTGGGGAGAGTGGCAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS TCA 90 bp | GTCCAGGCAGCTGGGTCACTTTCTCATAGGAGTCCAGGTGGCCGTTaGCAGTCTTCCGACAAAGATGCTGGAGGGTGGCCACGTTGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: VQAAGSLSHRSPGGR*QSSDKDAGGWPRWR Trigger: CCTCCAACGTGGCCACCCTCCAGCATCTTTGTCGGAAGACTGTCAACGGCCACCTGGACTCCTATGAGAAAGTGACCCAGCTGCCTGGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CCA 90 bp | TTCGGACGAGGGTTCCGTGGGTGGCAAAGAAAAGGAGGGGGTCCCTaGAGGCGGCATGTAGTGGTGCACCAGCTTGAGTACACAGTCGAA | + |
|
Preference number: 5 (lower is better) Translates to: FGRGFRGWQRKGGGP*RRHVVVHQLEYTVE Trigger: TTCGACTGTGTACTCAAGCTGGTGCACCACTACATGCCGCCTCCAGGGACCCCCTCCTTTTCTTTGCCACCCACGGAACCCTCGTCCGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CAA 90 bp | CAGGTGCCTGCTCTTGATCAAACCAAATCAAAGCGCAAACAAGTTCCAGCGGGACCGCTCTCCTGCAGCTaGCGCACGGCGTTCACCACC | + |
|
Preference number: 5 (lower is better) Translates to: QVPALDQTKSKRKQVPAGPLSCS*RTAFTT Trigger: GGTGGTGAACGCCGTGCGCAAGCTGCAGGAGAGCGG...TCCCGCTGGAACTTGTTTGCGCTTTGATTTGGTTTGATCAAGAGCAGGCACCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CAA 90 bp | CTGCTCCAGGGAAACCTGGGCTCCAAGATGGCTCATCTGTTGATCTGCCTCCCTAGCTGGTACTCGCTTTaGGAGCTGAAGGTCTTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: LLQGNLGSKMAHLLICLPSWYSL*ELKVLR Trigger: CCTCAAGACCTTCAGCTCCAAAAGCGAGTACCAGCT...AGGGAGGCAGATCAACAGATGAGCCATCTTGGAGCCCAGGTTTCCCTGGAGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS-3UTR CAA 90 bp | CTGGCCTGTAGCCACCTGGGTGAATCCCTCAACTCTCTGCCTATTGGCTGTGTTGAGTCCAGGTGGCCGTaGACAGTCTTCCGACAAAGA | + |
|
Preference number: 5 (lower is better) Translates to: LACSHLGESLNSLPIGCVESRWP*TVFRQR Trigger: TCTTTGTCGGAAGACTGTCAACGGCCACCTGGACTC...AACACAGCCAATAGGCAGAGAGTTGAGGGATTCACCCAGGTGGCTACAGGCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CCA 72 bp | TCTCTTGGGGGTACTCCCGGGGAGTGCCTGGGCAGGTaGCTGCTCCGGAACTTCGGACGAGGGTTCCGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: SLGGTPGECLGR*LLRNFGRGFRG Trigger: CCCACGGAACCCTCGTCCGAAGTTCCGGAGCAGCCACCTGCCCAGGCACTCCCCGGGAGTACCCCCAAGAGA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CCA 72 bp | CAGGTGGCTGCTCCGGAACTTCGGACGAGGGTTCCGTaGGTGGCAAAGAAAAGGAGGGGGTCCCTGGAGGCG | + |
|
Preference number: 6 (lower is better) Translates to: QVAAPELRTRVP*VAKKRRGSLEA Trigger: CGCCTCCAGGGACCCCCTCCTTTTCTTTGCCACCCACGGAACCCTCGTCCGAAGTTCCGGAGCAGCCACCTG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CAA 90 bp | TCCTGCAGCTTGCGCACGGCGTTCACCACCAGCTGGTACTCGCTTTaGGAGCTGAAGGTCTTGAGGCGCAGGCTGGTGTCCAGGGGGCGG | + |
|
Preference number: 6 (lower is better) Translates to: SCSLRTAFTTSWYSL*ELKVLRRRLVSRGR Trigger: CCGCCCCCTGGACACCAGCCTGCGCCTCAAGACCTTCAGCTCCAAAAGCGAGTACCAGCTGGTGGTGAACGCCGTGCGCAAGCTGCAGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CCA 72 bp | TGGCTGCTCCGGAACTTCGGACGAGGGTTCCGTGGGTaGCAAAGAAAAGGAGGGGGTCCCTGGAGGCGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: WLLRNFGRGFRG*QRKGGGPWRRH Trigger: ATGCCGCCTCCAGGGACCCCCTCCTTTTCTTTGCCACCCACGGAACCCTCGTCCGAAGTTCCGGAGCAGCCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS GCA 72 bp | GATGTAGTAAGCTCTCTTGGGGGTACTCCCGGGGAGTaGCTGGGCAGGTGGCTGCTCCGGAACTTCGGACGA | + |
|
Preference number: 6 (lower is better) Translates to: DVVSSLGGTPGE*LGRWLLRNFGR Trigger: TCGTCCGAAGTTCCGGAGCAGCCACCTGCCCAGGCACTCCCCGGGAGTACCCCCAAGAGAGCTTACTACATC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS GCA 72 bp | TCACGGCGCTCCAGTAGAATCCGCTCTCCTGCAGCTTaGGCACGGCGTTCACCACCAGCTGGTACTCGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: SRRSSRIRSPAA*ARRSPPAGTRF Trigger: AAAGCGAGTACCAGCTGGTGGTGAACGCCGTGCGCAAGCTGCAGGAGAGCGGATTCTACTGGAGCGCCGTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CCA 72 bp | CTCTCCTGCAGCTTGCGCACGGCGTTCACCACCAGCTaGTACTCGCTTTTGGAGCTGAAGGTCTTGAGGCGC | + |
|
Preference number: 6 (lower is better) Translates to: LSCSLRTAFTTS*YSLLELKVLRR Trigger: GCGCCTCAAGACCTTCAGCTCCAAAAGCGAGTACCAGCTGGTGGTGAACGCCGTGCGCAAGCTGCAGGAGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CCA 72 bp | GACTGGGTCTTGACGCTCAACGTGAAGAAGTGGCGCTaGTCCGAGCTGTCGCGGATAAGAAAGGTGCCCGCG | + |
|
Preference number: 6 (lower is better) Translates to: DWVLTLNVKKWR*SELSRIRKVPA Trigger: CGCGGGCACCTTTCTTATCCGCGACAGCTCGGACCAGCGCCACTTCTTCACGTTGAGCGTCAAGACCCAGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CCA 72 bp | GGGTTCCGTGGGTGGCAAAGAAAAGGAGGGGGTCCCTaGAGGCGGCATGTAGTGGTGCACCAGCTTGAGTAC | + |
|
Preference number: 6 (lower is better) Translates to: GFRGWQRKGGGP*RRHVVVHQLEY Trigger: GTACTCAAGCTGGTGCACCACTACATGCCGCCTCCAGGGACCCCCTCCTTTTCTTTGCCACCCACGGAACCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CCA 72 bp | TCCAGGTGGCCGTTGACAGTCTTCCGACAAAGATGCTaGAGGGTGGCCACGTTGGAGGAGAGAGGTCGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: SRWPLTVFRQRC*RVATLEERGRL Trigger: GAGCCGACCTCTCTCCTCCAACGTGGCCACCCTCCAGCATCTTTGTCGGAAGACTGTCAACGGCCACCTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CAA 72 bp | TTGCGCACGGCGTTCACCACCAGCTGGTACTCGCTTTaGGAGCTGAAGGTCTTGAGGCGCAGGCTGGTGTCC | + |
|
Preference number: 6 (lower is better) Translates to: LRTAFTTSWYSL*ELKVLRRRLVS Trigger: GGACACCAGCCTGCGCCTCAAGACCTTCAGCTCCAAAAGCGAGTACCAGCTGGTGGTGAACGCCGTGCGCAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CCA 72 bp | GTCCCCGACTGGGTCTTGACGCTCAACGTGAAGAAGTaGCGCTGGTCCGAGCTGTCGCGGATAAGAAAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: VPDWVLTLNVKK*RWSELSRIRKV Trigger: CACCTTTCTTATCCGCGACAGCTCGGACCAGCGCCACTTCTTCACGTTGAGCGTCAAGACCCAGTCGGGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CCA 72 bp | CCCTCACACTGGATGCGTAGGTTCTTGGTCCCCGACTaGGTCTTGACGCTCAACGTGAAGAAGTGGCGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: PSHWMRRFLVPD*VLTLNVKKWRW Trigger: CCAGCGCCACTTCTTCACGTTGAGCGTCAAGACCCAGTCGGGGACCAAGAACCTACGCATCCAGTGTGAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CCA 72 bp | GTGCACCAGCTTGAGTACACAGTCGAAGCGGGGAACTaGCTGCGTGCTTCGGGGGTCACTCTGCAGCGAAAA | + |
|
Preference number: 6 (lower is better) Translates to: VHQLEYTVEAGN*LRASGVTLQRK Trigger: TTTTCGCTGCAGAGTGACCCCCGAAGCACGCAGCCAGTTCCCCGCTTCGACTGTGTACTCAAGCTGGTGCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CAA 72 bp | CACTGGATGCGTAGGTTCTTGGTCCCCGACTGGGTCTaGACGCTCAACGTGAAGAAGTGGCGCTGGTCCGAG | + |
|
Preference number: 6 (lower is better) Translates to: HWMRRFLVPDWV*TLNVKKWRWSE Trigger: CTCGGACCAGCGCCACTTCTTCACGTTGAGCGTCAAGACCCAGTCGGGGACCAAGAACCTACGCATCCAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS TCA 72 bp | GCTGGGTCACTTTCTCATAGGAGTCCAGGTGGCCGTTaGCAGTCTTCCGACAAAGATGCTGGAGGGTGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: AGSLSHRSPGGR*QSSDKDAGGWP Trigger: TGGCCACCCTCCAGCATCTTTGTCGGAAGACTGTCAACGGCCACCTGGACTCCTATGAGAAAGTGACCCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||
| CDS CCA 72 bp | AAAGTGGAGCATCATACTGATCCAGGAACTCCCGAATaGGTCCAGGCAGCTGGGTCACTTTCTCATAGGAGT | + |
|
Preference number: 6 (lower is better) Translates to: KVEHHTDPGTPE*VQAAGSLSHRS Trigger: ACTCCTATGAGAAAGTGACCCAGCTGCCTGGACCCATTCGGGAGTTCCTGGATCAGTATGATGCTCCACTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054002.4 |
||