Pregenerated sensors for SOCS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020027Ensembl transcript IDs: ENSMUST00000020215.16, ENSMUST00000119917.2, ENSMUST00000139210.8, ENSMUST00000170690.8, ENSMUST00000172070.8
Found 150 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGGCTGGTGACTCACAGAGCACCCTGGGCTCTGCTTGTGAAAGGCTaGCTTGGGGCGGGTCACCTAACATTTCCGAGCCTTGGTTTTCAA | + |
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Preference number: 1 (lower is better) Translates to: RLVTHRAPWALLVKG*LGAGHLTFPSLGFQ Trigger: TTGAAAACCAAGGCTCGGAAATGTTAGGTGACCCGCCCCAAGTCAGCCTTTCACAAGCAGAGCCCAGGGTGCTCTGTGAGTCACCAGCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR TCA 90 bp | CTTGGGCCAGGAGTGCAAGGGCAATGTCCTGTGAGTAAGGAGACATaGGGGAACAGCTTGCACCTTGGCCCAGATGAACGCAGGCACCTT | + |
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Preference number: 1 (lower is better) Translates to: LGPGVQGQCPVSKET*GNSLHLGPDERRHL Trigger: AAGGTGCCTGCGTTCATCTGGGCCAAGGTGCAAGCTGTTCCCTCATGTCTCCTTACTCACAGGACATTGCCCTTGCACTCCTGGCCCAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR TCA 90 bp | GCCCAGCCTGGATTTGAACTCACTCTGCAGCCCGGGCAAGCCTTGTaGCCCTTGCCAACTTGTAACACTCCTGACTCAGCTTCCCAAGTA | + |
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Preference number: 1 (lower is better) Translates to: AQPGFELTLQPGQAL*PLPTCNTPDSASQV Trigger: TACTTGGGAAGCTGAGTCAGGAGTGTTACAAGTTGGCAAGGGTCACAAGGCTTGCCCGGGCTGCAGAGTGAGTTCAAATCCAGGCTGGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR TCA 90 bp | GAATGTGGCGAGGTGGGAAGGAAATATGTTCGAAATCGAGAGCTGTaGTGTCCGGCTGGTGACTCACAGAGCACCCTGGGCTCTGCTTGT | + |
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Preference number: 1 (lower is better) Translates to: ECGEVGRKYVRNREL*CPAGDSQSTLGSAC Trigger: ACAAGCAGAGCCCAGGGTGCTCTGTGAGTCACCAGCCGGACATCACAGCTCTCGATTTCGAACATATTTCCTTCCCACCTCGCCACATTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR TCA 90 bp | GAATCAAGAGCCATCTTGGGCCAGGAGTGCAAGGGCAATGTCCTGTaGGTAAGGAGACATGAGGGAACAGCTTGCACCTTGGCCCAGATG | + |
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Preference number: 1 (lower is better) Translates to: ESRAILGQECKGNVL*VRRHEGTACTLAQM Trigger: CATCTGGGCCAAGGTGCAAGCTGTTCCCTCATGTCTCCTTACTCACAGGACATTGCCCTTGCACTCCTGGCCCAAGATGGCTCTTGATTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR TCA 90 bp | AGGTCTTTCACTGAACCTGTACCTGACCAATTCTGCTCAGCTAGCTaGCCAGGGAGCTTCAGAGGTCTCCCCGTCTCCTCCCTGATAGTG | + |
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Preference number: 1 (lower is better) Translates to: RSFTEPVPDQFCSAS*PGSFRGLPVSSLIV Trigger: CACTATCAGGGAGGAGACGGGGAGACCTCTGAAGCTCCCTGGTCAGCTAGCTGAGCAGAATTGGTCAGGTACAGGTTCAGTGAAAGACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR GCA 90 bp | AGACATGGTCTCACTAAGCTGCCCAGCCTGGATTTGAACTCACTCTaGAGCCCGGGCAAGCCTTGTGACCCTTGCCAACTTGTAACACTC | + |
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Preference number: 1 (lower is better) Translates to: RHGLTKLPSLDLNSL*SPGKPCDPCQLVTL Trigger: GAGTGTTACAAGTTGGCAAGGGTCACAAGGCTTGCCCGGGCTGCAGAGTGAGTTCAAATCCAGGCTGGGCAGCTTAGTGAGACCATGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR TCA 90 bp | ATGGGACACCTTCCTGGACACCTGTTCTTAAGTGGTGTGGTGAAATaGGGTACCAGTCTGCTGTGGCAACCCCGAGAAAGCAGAGGTATC | + |
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Preference number: 1 (lower is better) Translates to: MGHLPGHLFLSGVVK*GTSLLWQPRESRGI Trigger: GATACCTCTGCTTTCTCGGGGTTGCCACAGCAGACTGGTACCTCATTTCACCACACCACTTAAGAACAGGTGTCCAGGAAGGTGTCCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR CCA 90 bp | GGTGACTCACAGAGCACCCTGGGCTCTGCTTGTGAAAGGCTGACTTaGGGCGGGTCACCTAACATTTCCGAGCCTTGGTTTTCAATAAAA | + |
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Preference number: 1 (lower is better) Translates to: GDSQSTLGSACERLT*GGSPNISEPWFSIK Trigger: TTTTATTGAAAACCAAGGCTCGGAAATGTTAGGTGACCCGCCCCAAGTCAGCCTTTCACAAGCAGAGCCCAGGGTGCTCTGTGAGTCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR CCA 90 bp | CTAAAGGCAAGTCATGGGACACCTTCCTGGACACCTGTTCTTAAGTaGTGTGGTGAAATGAGGTACCAGTCTGCTGTGGCAACCCCGAGA | + |
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Preference number: 1 (lower is better) Translates to: LKASHGTPSWTPVLK*CGEMRYQSAVATPR Trigger: TCTCGGGGTTGCCACAGCAGACTGGTACCTCATTTCACCACACCACTTAAGAACAGGTGTCCAGGAAGGTGTCCCATGACTTGCCTTTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR GCA 90 bp | GCCCAGAGTCTGATGGGTTTGATTGCATGTCCTAAGACTGTTCCATaGAGTTCCTGGGAGCCCTTTAAATTGCCAAGCAATTGCCACAGA | + |
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Preference number: 1 (lower is better) Translates to: AQSLMGLIACPKTVP*SSWEPFKLPSNCHR Trigger: TCTGTGGCAATTGCTTGGCAATTTAAAGGGCTCCCAGGAACTGCATGGAACAGTCTTAGGACATGCAATCAAACCCATCAGACTCTGGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR GCA 90 bp | AACACTCCTGACTCAGCTTCCCAAGTAACTGGCATCACAGCCCCGTaGCAGCACACCCAGCTGAGACTGCTTTTAATTATAGTCACTATA | + |
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Preference number: 1 (lower is better) Translates to: NTPDSASQVTGITAP*QHTQLRLLLIIVTI Trigger: TATAGTGACTATAATTAAAAGCAGTCTCAGCTGGGTGTGCTGGCACGGGGCTGTGATGCCAGTTACTTGGGAAGCTGAGTCAGGAGTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR GCA 90 bp | TGTGTGCACGAGTATGTATGCAATGCACTTGTTCCTGTGGATGTGTaGACACATATAGAAAGCCAGAGGTTAGCACTGTGTGCCTTCCAC | + |
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Preference number: 1 (lower is better) Translates to: CVHEYVCNALVPVDV*THIESQRLALCAFH Trigger: GTGGAAGGCACACAGTGCTAACCTCTGGCTTTCTATATGTGTGCACACATCCACAGGAACAAGTGCATTGCATACATACTCGTGCACACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR CCA 90 bp | GAACAAAGACTACATTTCCCAACTTCCCTTGCGGTCAGATGGGCTTaGGCGATCCCATTTTGGCCAAAGCAATGTGAGCAACATTTAAAG | + |
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Preference number: 1 (lower is better) Translates to: EQRLHFPTSLAVRWA*AIPFWPKQCEQHLK Trigger: CTTTAAATGTTGCTCACATTGCTTTGGCCAAAATGGGATCGCCCAAGCCCATCTGACCGCAAGGGAAGTTGGGAAATGTAGTCTTTGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR GCA 90 bp | TATGTGTGTTACATTCACAGGGATGCTGGGTGCTCGCTGTGCTTTTaGTTGGCAAACCAAACCAACATTTGTTCTCCATATTCCATCGAC | + |
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Preference number: 1 (lower is better) Translates to: YVCYIHRDAGCSLCF*LANQTNICSPYSID Trigger: GTCGATGGAATATGGAGAACAAATGTTGGTTTGGTTTGCCAAGCAAAAGCACAGCGAGCACCCAGCATCCCTGTGAATGTAACACACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR GCA 90 bp | TTCTCTCTAACCATGAGACAAACCCTCCTTCCCTTAAGTTGCTTTTaGTTGGCATTTGAGCATAGCTCGGCGAAAGGGAGCAATGTAAGA | + |
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Preference number: 1 (lower is better) Translates to: FSLTMRQTLLPLSCF*LAFEHSSAKGSNVR Trigger: TCTTACATTGCTCCCTTTCGCCGAGCTATGCTCAAATGCCAAGCAAAAGCAACTTAAGGGAAGGAGGGTTTGTCTCATGGTTAGAGAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR CCA 90 bp | TTCCCAACTTCCCTTGCGGTCAGATGGGCTTGGGCGATCCCATTTTaGCCAAAGCAATGTGAGCAACATTTAAAGGTTATAAATGGAAAA | + |
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Preference number: 1 (lower is better) Translates to: FPTSLAVRWAWAIPF*PKQCEQHLKVINGK Trigger: TTTTCCATTTATAACCTTTAAATGTTGCTCACATTGCTTTGGCCAAAATGGGATCGCCCAAGCCCATCTGACCGCAAGGGAAGTTGGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR TCA 90 bp | CCAAAGGCTCACAAAGAACTAGCTGTGTTCCCTCAGCAAGTAACTTaGTCTCTCTTTTTCTTGACTGATGAATGGGTTCACTTGTACCTG | + |
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Preference number: 1 (lower is better) Translates to: PKAHKELAVFPQQVT*SLFFLTDEWVHLYL Trigger: CAGGTACAAGTGAACCCATTCATCAGTCAAGAAAAAGAGAGATCAAGTTACTTGCTGAGGGAACACAGCTAGTTCTTTGTGAGCCTTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR TCA 90 bp | TGCGGTCAGATGGGCTTGGGCGATCCCATTTTGGCCAAAGCAATGTaGGCAACATTTAAAGGTTATAAATGGAAAATGGTCAATGTTCAT | + |
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Preference number: 1 (lower is better) Translates to: CGQMGLGDPILAKAM*ATFKGYKWKMVNVH Trigger: ATGAACATTGACCATTTTCCATTTATAACCTTTAAATGTTGCTCACATTGCTTTGGCCAAAATGGGATCGCCCAAGCCCATCTGACCGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR TCA 90 bp | ATGAAGAACAAGGGATCAGAATCCAGGCCATGTTTGGCTATTTGGTaGGTTCAAGGTCACCCTGAGATATCTGGGACTTTGTATCAAAAA | + |
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Preference number: 1 (lower is better) Translates to: MKNKGSESRPCLAIW*VQGHPEISGTLYQK Trigger: TTTTTGATACAAAGTCCCAGATATCTCAGGGTGACCTTGAACTCACCAAATAGCCAAACATGGCCTGGATTCTGATCCCTTGTTCTTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR CCA 90 bp | CACACATATAGAAAGCCAGAGGTTAGCACTGTGTGCCTTCCACAATaGCTTTCTACCTTAAAATTTAGATCAGGTCTTTCACTGAACCTG | + |
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Preference number: 1 (lower is better) Translates to: HTYRKPEVSTVCLPQ*LSTLKFRSGLSLNL Trigger: CAGGTTCAGTGAAAGACCTGATCTAAATTTTAAGGTAGAAAGCCATTGTGGAAGGCACACAGTGCTAACCTCTGGCTTTCTATATGTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR TCA 90 bp | TGTGGGGAAATAAATAGAAGCCACAGATGTCTAAGTGGCTCCAAGTaGCAACAGAGGAGTCTCCTTCTATTAGAATTAAAGTTGAAAGGT | + |
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Preference number: 1 (lower is better) Translates to: CGEINRSHRCLSGSK*QQRSLLLLELKLKG Trigger: ACCTTTCAACTTTAATTCTAATAGAAGGAGACTCCTCTGTTGTCACTTGGAGCCACTTAGACATCTGTGGCTTCTATTTATTTCCCCACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR CCA 90 bp | AAGGTTATAAATGGAAAATGGTCAATGTTCATCAAACCCATTAATTaGGCGAGTTTTAGAATCAACACCTGTGGGTGTGTTTATGAGGGT | + |
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Preference number: 1 (lower is better) Translates to: KVINGKWSMFIKPIN*ASFRINTCGCVYEG Trigger: ACCCTCATAAACACACCCACAGGTGTTGATTCTAAAACTCGCCCAATTAATGGGTTTGATGAACATTGACCATTTTCCATTTATAACCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR CCA 90 bp | TGGCCAAAGCAATGTGAGCAACATTTAAAGGTTATAAATGGAAAATaGTCAATGTTCATCAAACCCATTAATTGGGCGAGTTTTAGAATC | + |
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Preference number: 1 (lower is better) Translates to: WPKQCEQHLKVINGK*SMFIKPINWASFRI Trigger: GATTCTAAAACTCGCCCAATTAATGGGTTTGATGAACATTGACCATTTTCCATTTATAACCTTTAAATGTTGCTCACATTGCTTTGGCCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGTCTGCTGTGGCAACCCCGAGAAAGCAGAGGTATCTCCACCCCGATTCCAGAAAGGCTCAACTGAGTaGGGAAGACCCACCCCACCC | + |
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Preference number: 2 (lower is better) Translates to: PVCCGNPEKAEVSPPRFQKGSTE*GRPTPP Trigger: GGGTGGGGTGGGTCTTCCCCACTCAGTTGAGCCTTT...CTGGAATCGGGGTGGAGATACCTCTGCTTTCTCGGGGTTGCCACAGCAGACTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR CAA 90 bp | CAGGCAGCCTCTCTTCTGGTGGAGCTTGCCCAGAGTCTGATGGGTTaGATTGCATGTCCTAAGACTGTTCCATGCAGTTCCTGGGAGCCC | + |
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Preference number: 2 (lower is better) Translates to: QAASLLVELAQSLMG*IACPKTVPCSSWEP Trigger: GGGCTCCCAGGAACTGCATGGAACAGTCTTAGGACATGCAATCAAACCCATCAGACTCTGGGCAAGCTCCACCAGAAGAGAGGCTGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR TCA 90 bp | GAAAAGGGTCATAAAATAGTGATACAGGGCACAGCAGAGAGGCCTACGAGGCCTCCAGCCCTGACACAGTaGGGAGAGGCCTTTCGATGC | + |
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Preference number: 2 (lower is better) Translates to: EKGHKIVIQGTAERPTRPPALTQ*GEAFRC Trigger: GCATCGAAAGGCCTCTCCTCACTGTGTCAGGGCTGG...AGGCCTCGTAGGCCTCTCTGCTGTGCCCTGTATCACTATTTTATGACCCTTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR TCA 90 bp | CGTGTGCTTGCTTTGAACTCTAAAGGCAAGTCATGGGACACCTTCCTGGACACCCCCGGGCAAGCCTTGTaGCCCTTGCCAACTTGTAAC | + |
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Preference number: 2 (lower is better) Translates to: RVLALNSKGKSWDTFLDTPGQAL*PLPTCN Trigger: GTTACAAGTTGGCAAGGGTCACAAGGCTTGCCCGGG...GGTGTCCAGGAAGGTGTCCCATGACTTGCCTTTAGAGTTCAAAGCAAGCACACG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR TCA 90 bp | TTCAGAGGTCTCCCCGTCTCCTCCCTGATAGTGCTGGGGATACAGTCACAACCACTGTGGGTGTGTTTATaGGGGTGTTCCCAGAAAGGC | + |
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Preference number: 2 (lower is better) Translates to: FRGLPVSSLIVLGIQSQPLWVCL*GCSQKG Trigger: GCCTTTCTGGGAACACCCTCATAAACACACCCACAG...TGGTTGTGACTGTATCCCCAGCACTATCAGGGAGGAGACGGGGAGACCTCTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR CAA 90 bp | CCTATGACAGCCGTCAATCATCTCAGCAAGCATGGGATCCCAAGCTaGGTTTTAACTTGGGTTAAAGCAATCGGCGAGGGGCAGGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: PMTAVNHLSKHGIPS*VLTWVKAIGEGQAA Trigger: GGCTGCCTGCCCCTCGCCGATTGCTTTAACCCAAGTTAAAACCAAGCTTGGGATCCCATGCTTGCTGAGATGATTGACGGCTGTCATAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR TCA 90 bp | ATTCTTCTTCCACCATGCCACAAAGTAACTGAAGCTTTTGCAGCCAACGGAACCCCTGGGCTCTGCTTGTaGAAGGCTGACTTGGGGCGG | + |
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Preference number: 2 (lower is better) Translates to: ILLPPCHKVTEAFAANGTPGLCL*KADLGR Trigger: CCGCCCCAAGTCAGCCTTTCACAAGCAGAGCCCAGG...GGTTCCGTTGGCTGCAAAAGCTTCAGTTACTTTGTGGCATGGTGGAAGAAGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR TCA 90 bp | ACCTCCCTCTGCTTCCTACTGAAGCTGCTGCATGATTCCTCCACTCCCACCCCAATGCCACAAAGTAACTaGAGCTTTTGCAGCCAACGG | + |
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Preference number: 2 (lower is better) Translates to: TSLCFLLKLLHDSSTPTPMPQSN*SFCSQR Trigger: CCGTTGGCTGCAAAAGCTTCAGTTACTTTGTGGCAT...TGGGGTGGGAGTGGAGGAATCATGCAGCAGCTTCAGTAGGAAGCAGAGGGAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR TCA 90 bp | CGTGTGCTTGCTTTGAACTCTAAAGGCAAGTCATGGGACACCTTCCTGGACACCCCCTCTGCTTCCTACTaGAGCTGCTGCATGATTCCT | + |
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Preference number: 2 (lower is better) Translates to: RVLALNSKGKSWDTFLDTPSASY*SCCMIP Trigger: AGGAATCATGCAGCAGCTTCAGTAGGAAGCAGAGGG...GGTGTCCAGGAAGGTGTCCCATGACTTGCCTTTAGAGTTCAAAGCAAGCACACG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR TCA 90 bp | AGGTATCTCCACCCCGATTCCAGTGCTAGCACACAGGAAACTAGACACACAACATTCTGCTCAGCTAGCTaGCCAGGGAGCTTCAGAGGT | + |
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Preference number: 2 (lower is better) Translates to: RYLHPDSSASTQETRHTTFCSAS*PGSFRG Trigger: ACCTCTGAAGCTCCCTGGTCAGCTAGCTGAGCAGAA...TGTTGTGTGTCTAGTTTCCTGTGTGCTAGCACTGGAATCGGGGTGGAGATACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR GCA 90 bp | AGGTATCTCCACCCCGATTCCAGTGCTAGCACACAGGAAACTAGACACACAACATTTCCCAACTTCCCTTaGGGTCAGATGGGCTTGGGC | + |
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Preference number: 2 (lower is better) Translates to: RYLHPDSSASTQETRHTTFPNFP*GQMGLG Trigger: GCCCAAGCCCATCTGACCGCAAGGGAAGTTGGGAAA...TGTTGTGTGTCTAGTTTCCTGTGTGCTAGCACTGGAATCGGGGTGGAGATACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR CCA 90 bp | AGGTATCTCCACCCCGATTCCAGTGCTAGCACACAGGAAACTAGACACACAACAACTCACAGAGCACCCTaGGCTCTGCTTGTGAAAGGC | + |
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Preference number: 2 (lower is better) Translates to: RYLHPDSSASTQETRHTTTHRAP*ALLVKG Trigger: GCCTTTCACAAGCAGAGCCCAGGGTGCTCTGTGAGT...TGTTGTGTGTCTAGTTTCCTGTGTGCTAGCACTGGAATCGGGGTGGAGATACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR TCA 90 bp | ATTCTTCTTCCACCATGCCACAAAGTAACTGAAGCTTTTGCAGCCAACGGAACCTCCAAATCCCAGCCCTaGCACAGTGAGGAGAGGCCT | + |
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Preference number: 2 (lower is better) Translates to: ILLPPCHKVTEAFAANGTSKSQP*HSEERP Trigger: AGGCCTCTCCTCACTGTGTCAGGGCTGGGATTTGGA...GGTTCCGTTGGCTGCAAAAGCTTCAGTTACTTTGTGGCATGGTGGAAGAAGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR TCA 90 bp | CTTAAGTGGTGTGGTGAAATGAGGTACCAGTCTGCTGTGGCAACCCCGAGAAAGCTAAGTGGCTCCAAGTaGCAACAGAGGAGTCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: LKWCGEMRYQSAVATPRKLSGSK*QQRSLL Trigger: AAGGAGACTCCTCTGTTGTCACTTGGAGCCACTTAG...CTTTCTCGGGGTTGCCACAGCAGACTGGTACCTCATTTCACCACACCACTTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR GCA 90 bp | CTTAAGTGGTGTGGTGAAATGAGGTACCAGTCTGCTGTGGCAACCCCGAGAAAGAACCTTCTAGTCAGTTaGTCTGGCTGCACGACCTTG | + |
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Preference number: 2 (lower is better) Translates to: LKWCGEMRYQSAVATPRKNLLVS*SGCTTL Trigger: CAAGGTCGTGCAGCCAGAGCAACTGACTAGAAGGTT...CTTTCTCGGGGTTGCCACAGCAGACTGGTACCTCATTTCACCACACCACTTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR GCA 90 bp | AAGACTACATTTCCCAACTTCCCTTGCGGTCAGATGGGCTTGGGCGATCCCATTTCTTCTGGTGGAGCTTaGCCAGAGTCTGATGGGTTT | + |
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Preference number: 2 (lower is better) Translates to: KTTFPNFPCGQMGLGDPISSGGA*PESDGF Trigger: AAACCCATCAGACTCTGGGCAAGCTCCACCAGAAGA...AATGGGATCGCCCAAGCCCATCTGACCGCAAGGGAAGTTGGGAAATGTAGTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR GCA 90 bp | AGGTATCTCCACCCCGATTCCAGTGCTAGCACACAGGAAACTAGACACACAACAGATTTGAACTCACTCTaGAGCCCGGGCAAGCCTTGT | + |
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Preference number: 2 (lower is better) Translates to: RYLHPDSSASTQETRHTTDLNSL*SPGKPC Trigger: ACAAGGCTTGCCCGGGCTGCAGAGTGAGTTCAAATC...TGTTGTGTGTCTAGTTTCCTGTGTGCTAGCACTGGAATCGGGGTGGAGATACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR CCA 90 bp | CTCCTTCAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTCCAGAGGAGGGCCTCTaGGTTCTCTTTCACATAGCT | + |
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Preference number: 2 (lower is better) Translates to: LLQLSSWKWKPFFLSYGAPEEGL*VLFHIA Trigger: AGCTATGTGAAAGAGAACCCAGAGGCCCTCCTCTGG...AGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTGAAGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
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| 3UTR-3UTR GCA 90 bp | AGGTATCTCCACCCCGATTCCAGTGCTAGCACACAGGAAACTAGACACACAACACCTAAGACTGTTCCATaGAGTTCCTGGGAGCCCTTT | + |
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Preference number: 2 (lower is better) Translates to: RYLHPDSSASTQETRHTTPKTVP*SSWEPF Trigger: AAAGGGCTCCCAGGAACTGCATGGAACAGTCTTAGG...TGTTGTGTGTCTAGTTTCCTGTGTGCTAGCACTGGAATCGGGGTGGAGATACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR GCA 90 bp | CGTGTGCTTGCTTTGAACTCTAAAGGCAAGTCATGGGACACCTTCCTGGACACCTGCTCGCTGTGCTTTTaGTTGGCAAACCAAACCAAC | + |
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Preference number: 2 (lower is better) Translates to: RVLALNSKGKSWDTFLDTCSLCF*LANQTN Trigger: GTTGGTTTGGTTTGCCAAGCAAAAGCACAGCGAGCA...GGTGTCCAGGAAGGTGTCCCATGACTTGCCTTTAGAGTTCAAAGCAAGCACACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR GCA 90 bp | CGTGTGCTTGCTTTGAACTCTAAAGGCAAGTCATGGGACACCTTCCTGGACACCAAGCCTTGTGACCCTTaGCAACTTGTAACACTCCTG | + |
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Preference number: 2 (lower is better) Translates to: RVLALNSKGKSWDTFLDTKPCDP*QLVTLL Trigger: CAGGAGTGTTACAAGTTGGCAAGGGTCACAAGGCTT...GGTGTCCAGGAAGGTGTCCCATGACTTGCCTTTAGAGTTCAAAGCAAGCACACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| 3UTR-3UTR CCA 90 bp | TTCAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTTGGACCAGAGGAGGGCCTCTaGGTTCTCTTTCACATAGCT | + |
|
Preference number: 2 (lower is better) Translates to: FSCPPGNGSLSFSPMELGPEEGL*VLFHIA Trigger: AGCTATGTGAAAGAGAACCCAGAGGCCCTCCTCTGG...TCCAAGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR CAA 90 bp | TCAAACATGGCTGTGCAGAACAAAGACTACATTTCCCAACTTCCCTaGCGGTCAGATGGGCTTGGGCGATCCCATTTTGGCCAAAGCAAT | + |
|
Preference number: 2 (lower is better) Translates to: SNMAVQNKDYISQLP*RSDGLGRSHFGQSN Trigger: ATTGCTTTGGCCAAAATGGGATCGCCCAAGCCCATCTGACCGCAAGGGAAGTTGGGAAATGTAGTCTTTGTTCTGCACAGCCATGTTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR TCA 90 bp | CACCCCGATTCCAGTGCTAGCACACAGGAAACTAGACACACAACATACAAAGGGAACGAGTCAGATCAGTaGTGCACATGTGGGTCAATG | + |
|
Preference number: 2 (lower is better) Translates to: HPDSSASTQETRHTTYKGNESDQ*CTCGSM Trigger: CATTGACCCACATGTGCATCACTGATCTGACTCGTT...CCCTTTGTATGTTGTGTGTCTAGTTTCCTGTGTGCTAGCACTGGAATCGGGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CCA 90 bp | ACAAGCATGGTCAGCTTAACGGAACTCCTACTAGATACATCAGGATGCAAACTAAGTGGAGCTGAAGCCTaGGTCAGCCAGGGTCTTTCC | + |
|
Preference number: 2 (lower is better) Translates to: TSMVSLTELLLDTSGCKLSGAEA*VSQGLS Trigger: GGAAAGACCCTGGCTGACCCAGGCTTCAGCTCCACT...TAGTTTGCATCCTGATGTATCTAGTAGGAGTTCCGTTAAGCTGACCATGCTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR-3UTR CCA 90 bp | CTTAAGTGGTGTGGTGAAATGAGGTACCAGTCTGCTGTGGCAACCCCGAGAAAGTGGAATGTGGCGAGGTaGGAAGGAAATATGTTCGAA | + |
|
Preference number: 2 (lower is better) Translates to: LKWCGEMRYQSAVATPRKWNVAR*EGNMFE Trigger: TTCGAACATATTTCCTTCCCACCTCGCCACATTCCA...CTTTCTCGGGGTTGCCACAGCAGACTGGTACCTCATTTCACCACACCACTTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CCA 90 bp | AGGTATCTCCACCCCGATTCCAGTGCTAGCACACAGGAAACTAGACACACAACATGGGCGATCCCATTTTaGCCAAAGCAATGTGAGCAA | + |
|
Preference number: 2 (lower is better) Translates to: RYLHPDSSASTQETRHTTWAIPF*PKQCEQ Trigger: TTGCTCACATTGCTTTGGCCAAAATGGGATCGCCCA...TGTTGTGTGTCTAGTTTCCTGTGTGCTAGCACTGGAATCGGGGTGGAGATACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CAA 90 bp | GTGTGTTACATTCACAGGGATGCTGGGTGCTCGCTGTGCTTTTGCTaGGCAAACCAAACCAACATTTGTTCTCCATATTCCATCGACGTG | + |
|
Preference number: 2 (lower is better) Translates to: VCYIHRDAGCSLCFC*ANQTNICSPYSIDV Trigger: CACGTCGATGGAATATGGAGAACAAATGTTGGTTTGGTTTGCCAAGCAAAAGCACAGCGAGCACCCAGCATCCCTGTGAATGTAACACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR GCA 90 bp | CGTGTGCTTGCTTTGAACTCTAAAGGCAAGTCATGGGACACCTTCCTGGACACCGTCACAACCAACTTTTaGATGTTTACTGGGCATCCA | + |
|
Preference number: 2 (lower is better) Translates to: RVLALNSKGKSWDTFLDTVTTNF*MFTGHP Trigger: TGGATGCCCAGTAAACATGCAAAAGTTGGTTGTGAC...GGTGTCCAGGAAGGTGTCCCATGACTTGCCTTTAGAGTTCAAAGCAAGCACACG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CCA 90 bp | CAGTCACAACCAACTTTTGCATGTTTACTGGGCATCCAAACTCGCACCTTCACATGTGAAAGGCTGACTTaGGGCGGGTCACCTAACATT | + |
|
Preference number: 2 (lower is better) Translates to: QSQPTFACLLGIQTRTFTCERLT*GGSPNI Trigger: AATGTTAGGTGACCCGCCCCAAGTCAGCCTTTCACA...TGTGAAGGTGCGAGTTTGGATGCCCAGTAAACATGCAAAAGTTGGTTGTGACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CCA 90 bp | AGGCATGCCTTCTTTCATATATACCTACACCCTATCCATGCAAGGACAGTATTAAGGCAGCCTCTCTTCTaGTGGAGCTTGCCCAGAGTC | + |
|
Preference number: 2 (lower is better) Translates to: RHAFFHIYLHPIHARTVLRQPLF*WSLPRV Trigger: GACTCTGGGCAAGCTCCACCAGAAGAGAGGCTGCCT...TAATACTGTCCTTGCATGGATAGGGTGTAGGTATATATGAAAGAAGGCATGCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CCA 90 bp | TGTAAGAATCAAGAGCCATCTTGGGCCAGGAGTGCAAGGGCAATGTCCTGTGAGCGCTGTGCTTTTGCTTaGCAAACCAAACCAACATTT | + |
|
Preference number: 2 (lower is better) Translates to: CKNQEPSWARSARAMSCERCAFA*QTKPTF Trigger: AAATGTTGGTTTGGTTTGCCAAGCAAAAGCACAGCG...CTCACAGGACATTGCCCTTGCACTCCTGGCCCAAGATGGCTCTTGATTCTTACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR TCA 90 bp | CAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTTGGACTAAAGGCAAGTCATTCTaGCAGGAATATTCTCTTGCC | + |
|
Preference number: 2 (lower is better) Translates to: QLSSWKWKPFFLSYGAWTKGKSF*QEYSLA Trigger: GGCAAGAGAATATTCCTGTCAGAATGACTTGCCTTT...AGTCCAAGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR CAA 90 bp | CTATGTGTGTTACATTCACAGGGATGCTGGGTGCTCGCTGTGCTTTaGCTTGGCAAACCAAACCAACATTTGTTCTCCATATTCCATCGA | + |
|
Preference number: 2 (lower is better) Translates to: LCVLHSQGCWVLAVL*LGKPNQHLFSIFHR Trigger: TCGATGGAATATGGAGAACAAATGTTGGTTTGGTTTGCCAAGCAAAAGCACAGCGAGCACCCAGCATCCCTGTGAATGTAACACACATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CAA 90 bp | TCTCTAACCATGAGACAAACCCTCCTTCCCTTAAGTTGCTTTTGCTaGGCATTTGAGCATAGCTCGGCGAAAGGGAGCAATGTAAGAATC | + |
|
Preference number: 2 (lower is better) Translates to: SLTMRQTLLPLSCFC*AFEHSSAKGSNVRI Trigger: GATTCTTACATTGCTCCCTTTCGCCGAGCTATGCTCAAATGCCAAGCAAAAGCAACTTAAGGGAAGGAGGGTTTGTCTCATGGTTAGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR GCA 90 bp | CTCCTTCAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTACAGGAATATTCTCTTaGCTTTCCTTGGGACATTTT | + |
|
Preference number: 2 (lower is better) Translates to: LLQLSSWKWKPFFLSYGATGIFS*LSLGHF Trigger: AAAATGTCCCAAGGAAAGGCAAGAGAATATTCCTGT...AGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTGAAGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR-3UTR GCA 90 bp | TCCTTCTTAATTAAAAAGATTTTGAGGGCAGGTGGCACACATCTGAATAGCAATGCGTTCACCTCCCTCTaGTTCCTACTGAAGCTGCTG | + |
|
Preference number: 2 (lower is better) Translates to: SFLIKKILRAGGTHLNSNAFTSL*FLLKLL Trigger: CAGCAGCTTCAGTAGGAAGCAGAGGGAGGTGAACGC...ATTGCTATTCAGATGTGTGCCACCTGCCCTCAAAATCTTTTTAATTAAGAAGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CCA 90 bp | CTTAAGTGGTGTGGTGAAATGAGGTACCAGTCTGCTGTGGCAACCCCGAGAAAGAACATTTCCGAGCCTTaGTTTTCAATAAAACTGTTC | + |
|
Preference number: 2 (lower is better) Translates to: LKWCGEMRYQSAVATPRKNISEP*FSIKLF Trigger: GAACAGTTTTATTGAAAACCAAGGCTCGGAAATGTT...CTTTCTCGGGGTTGCCACAGCAGACTGGTACCTCATTTCACCACACCACTTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR TCA 90 bp | GAAAAGTTAAGTCATAGGATTCTACATGGTAGAAGGGAGGCAGCTGTTGATGTCAAAGGCAAGTCATTCTaGCAGGAATATTCTCTTGCC | + |
|
Preference number: 2 (lower is better) Translates to: EKLSHRILHGRREAAVDVKGKSF*QEYSLA Trigger: GGCAAGAGAATATTCCTGTCAGAATGACTTGCCTTT...GACATCAACAGCTGCCTCCCTTCTACCATGTAGAATCCTATGACTTAACTTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR-3UTR TCA 90 bp | CAGTCACAACCAACTTTTGCATGTTTACTGGGCATCCAAACTCGCACCTTCACAAGATCACTGGCATATTaGATTTTTAAAGAGGCATGC | + |
|
Preference number: 2 (lower is better) Translates to: QSQPTFACLLGIQTRTFTRSLAY*IFKEAC Trigger: GCATGCCTCTTTAAAAATTCAATATGCCAGTGATCT...TGTGAAGGTGCGAGTTTGGATGCCCAGTAAACATGCAAAAGTTGGTTGTGACTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR TCA 90 bp | AGGCATGCCTTCTTTCATATATACCTACACCCTATCCATGCAAGGACAGTATTAGGAGAGATGCCAAACTaGAACTATGTGTGTTACATT | + |
|
Preference number: 2 (lower is better) Translates to: RHAFFHIYLHPIHARTVLGEMPN*NYVCYI Trigger: AATGTAACACACATAGTTTCAGTTTGGCATCTCTCC...TAATACTGTCCTTGCATGGATAGGGTGTAGGTATATATGAAAGAAGGCATGCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR GCA 90 bp | GAAAAGTTAAGTCATAGGATTCTACATGGTAGAAGGGAGGCAGCTGTTGATGTCACAGGAATATTCTCTTaGCTTTCCTTGGGACATTTT | + |
|
Preference number: 2 (lower is better) Translates to: EKLSHRILHGRREAAVDVTGIFS*LSLGHF Trigger: AAAATGTCCCAAGGAAAGGCAAGAGAATATTCCTGT...GACATCAACAGCTGCCTCCCTTCTACCATGTAGAATCCTATGACTTAACTTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR-3UTR CCA 90 bp | TCCTTCTTAATTAAAAAGATTTTGAGGGCAGGTGGCACACATCTGAATAGCAATAGCTTGGTTTTAACTTaGGTTAAAGCAATCGGCGAG | + |
|
Preference number: 2 (lower is better) Translates to: SFLIKKILRAGGTHLNSNSLVLT*VKAIGE Trigger: CTCGCCGATTGCTTTAACCCAAGTTAAAACCAAGCT...ATTGCTATTCAGATGTGTGCCACCTGCCCTCAAAATCTTTTTAATTAAGAAGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR GCA 90 bp | TCCTTCTTAATTAAAAAGATTTTGAGGGCAGGTGGCACACATCTGAATAGCAATAAATGTACTACCCATTaGTCAATAAGTGTCACAGAA | + |
|
Preference number: 2 (lower is better) Translates to: SFLIKKILRAGGTHLNSNKCTTH*SISVTE Trigger: TTCTGTGACACTTATTGAGCAATGGGTAGTACATTT...ATTGCTATTCAGATGTGTGCCACCTGCCCTCAAAATCTTTTTAATTAAGAAGGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR TCA 72 bp | ACTCACAGAGCACCCTGGGCTCTGCTTGTGAAAGGCTaGCTTGGGGCGGGTCACCTAACATTTCCGAGCCTT | + |
|
Preference number: 3 (lower is better) Translates to: THRAPWALLVKG*LGAGHLTFPSL Trigger: AAGGCTCGGAAATGTTAGGTGACCCGCCCCAAGTCAGCCTTTCACAAGCAGAGCCCAGGGTGCTCTGTGAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR TCA 72 bp | ACTGAACCTGTACCTGACCAATTCTGCTCAGCTAGCTaGCCAGGGAGCTTCAGAGGTCTCCCCGTCTCCTCC | + |
|
Preference number: 3 (lower is better) Translates to: TEPVPDQFCSAS*PGSFRGLPVSS Trigger: GGAGGAGACGGGGAGACCTCTGAAGCTCCCTGGTCAGCTAGCTGAGCAGAATTGGTCAGGTACAGGTTCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CCA 72 bp | CAGAGCACCCTGGGCTCTGCTTGTGAAAGGCTGACTTaGGGCGGGTCACCTAACATTTCCGAGCCTTGGTTT | + |
|
Preference number: 3 (lower is better) Translates to: QSTLGSACERLT*GGSPNISEPWF Trigger: AAACCAAGGCTCGGAAATGTTAGGTGACCCGCCCCAAGTCAGCCTTTCACAAGCAGAGCCCAGGGTGCTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR TCA 72 bp | GGAGTGCAAGGGCAATGTCCTGTGAGTAAGGAGACATaGGGGAACAGCTTGCACCTTGGCCCAGATGAACGC | + |
|
Preference number: 3 (lower is better) Translates to: GVQGQCPVSKET*GNSLHLGPDER Trigger: GCGTTCATCTGGGCCAAGGTGCAAGCTGTTCCCTCATGTCTCCTTACTCACAGGACATTGCCCTTGCACTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR TCA 72 bp | GCCATCTTGGGCCAGGAGTGCAAGGGCAATGTCCTGTaGGTAAGGAGACATGAGGGAACAGCTTGCACCTTG | + |
|
Preference number: 3 (lower is better) Translates to: AILGQECKGNVL*VRRHEGTACTL Trigger: CAAGGTGCAAGCTGTTCCCTCATGTCTCCTTACTCACAGGACATTGCCCTTGCACTCCTGGCCCAAGATGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR GCA 72 bp | AACTCACTCTGCAGCCCGGGCAAGCCTTGTGACCCTTaGCAACTTGTAACACTCCTGACTCAGCTTCCCAAG | + |
|
Preference number: 3 (lower is better) Translates to: NSLCSPGKPCDP*QLVTLLTQLPK Trigger: CTTGGGAAGCTGAGTCAGGAGTGTTACAAGTTGGCAAGGGTCACAAGGCTTGCCCGGGCTGCAGAGTGAGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CAA 90 bp | ACCTCCCTCTGCTTCCTACTGAAGCTGCTGCATGATTCCTCCACTCCCACCCCAGTGCTCGCTGTGCTTTaGCTTGGCAAACCAAACCAA | + |
|
Preference number: 3 (lower is better) Translates to: TSLCFLLKLLHDSSTPTPVLAVL*LGKPNQ Trigger: TTGGTTTGGTTTGCCAAGCAAAAGCACAGCGAGCAC...TGGGGTGGGAGTGGAGGAATCATGCAGCAGCTTCAGTAGGAAGCAGAGGGAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CAA 90 bp | AAGACTACATTTCCCAACTTCCCTTGCGGTCAGATGGGCTTGGGCGATCCCATTGAATCAAGAGCCATCTaGGGCCAGGAGTGCAAGGGC | + |
|
Preference number: 3 (lower is better) Translates to: KTTFPNFPCGQMGLGDPIESRAI*GQECKG Trigger: GCCCTTGCACTCCTGGCCCAAGATGGCTCTTGATTC...AATGGGATCGCCCAAGCCCATCTGACCGCAAGGGAAGTTGGGAAATGTAGTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR TCA 72 bp | GGATTTGAACTCACTCTGCAGCCCGGGCAAGCCTTGTaGCCCTTGCCAACTTGTAACACTCCTGACTCAGCT | + |
|
Preference number: 3 (lower is better) Translates to: GFELTLQPGQAL*PLPTCNTPDSA Trigger: AGCTGAGTCAGGAGTGTTACAAGTTGGCAAGGGTCACAAGGCTTGCCCGGGCTGCAGAGTGAGTTCAAATCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR GCA 72 bp | GAGAAGATGAGTGGAACCCCAGCGTTCACCTCCCTCTaGTTCCTACTGAAGCTGCTGCATGATTCCTCCACT | + |
|
Preference number: 3 (lower is better) Translates to: EKMSGTPAFTSL*FLLKLLHDSST Trigger: AGTGGAGGAATCATGCAGCAGCTTCAGTAGGAAGCAGAGGGAGGTGAACGCTGGGGTTCCACTCATCTTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR TCA 72 bp | CTTCCTGGACACCTGTTCTTAAGTGGTGTGGTGAAATaGGGTACCAGTCTGCTGTGGCAACCCCGAGAAAGC | + |
|
Preference number: 3 (lower is better) Translates to: LPGHLFLSGVVK*GTSLLWQPRES Trigger: GCTTTCTCGGGGTTGCCACAGCAGACTGGTACCTCATTTCACCACACCACTTAAGAACAGGTGTCCAGGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CAA 90 bp | CAGTCACAACCAACTTTTGCATGTTTACTGGGCATCCAAACTCGCACCTTCACACTGCCCAGCCTGGATTaGAACTCACTCTGCAGCCCG | + |
|
Preference number: 3 (lower is better) Translates to: QSQPTFACLLGIQTRTFTLPSLD*NSLCSP Trigger: CGGGCTGCAGAGTGAGTTCAAATCCAGGCTGGGCAG...TGTGAAGGTGCGAGTTTGGATGCCCAGTAAACATGCAAAAGTTGGTTGTGACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CAA 90 bp | AAGACTACATTTCCCAACTTCCCTTGCGGTCAGATGGGCTTGGGCGATCCCATTTTGAAGAGACGCTTGTaGACCCTCTCCAGAAAAGGG | + |
|
Preference number: 3 (lower is better) Translates to: KTTFPNFPCGQMGLGDPILKRRL*TLSRKG Trigger: CCCTTTTCTGGAGAGGGTCAACAAGCGTCTCTTCAA...AATGGGATCGCCCAAGCCCATCTGACCGCAAGGGAAGTTGGGAAATGTAGTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR TCA 72 bp | ACGAGGCCTACGGTTGCTTGGAACGAGTCAGATCAGTaGTGCACATGTGGGTCAATGTCCTCTGATAGCCTT | + |
|
Preference number: 3 (lower is better) Translates to: TRPTVAWNESDQ*CTCGSMSSDSL Trigger: AAGGCTATCAGAGGACATTGACCCACATGTGCATCACTGATCTGACTCGTTCCAAGCAACCGTAGGCCTCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CCA 72 bp | CTACATTTCCCAACTTCCCTTGCGGTCAGATGGGCTTaGGCGATCCCATTTTGGCCAAAGCAATGTGAGCAA | + |
|
Preference number: 3 (lower is better) Translates to: LHFPTSLAVRWA*AIPFWPKQCEQ Trigger: TTGCTCACATTGCTTTGGCCAAAATGGGATCGCCCAAGCCCATCTGACCGCAAGGGAAGTTGGGAAATGTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR GCA 72 bp | ACCATGAGACAAACCCTCCTTCCCTTAAGTTGCTTTTaGTTGGCATTTGAGCATAGCTCGGCGAAAGGGAGC | + |
|
Preference number: 3 (lower is better) Translates to: TMRQTLLPLSCF*LAFEHSSAKGS Trigger: GCTCCCTTTCGCCGAGCTATGCTCAAATGCCAAGCAAAAGCAACTTAAGGGAAGGAGGGTTTGTCTCATGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CAA 90 bp | AGGTATCTCCACCCCGATTCCAGTGCTAGCACACAGGAAACTAGACACACAACAGTGGGTAGAGCCACTTaGGTCTTTATTGATGTCCTC | + |
|
Preference number: 3 (lower is better) Translates to: RYLHPDSSASTQETRHTTVGRAT*VFIDVL Trigger: GAGGACATCAATAAAGACCAAAGTGGCTCTACCCAC...TGTTGTGTGTCTAGTTTCCTGTGTGCTAGCACTGGAATCGGGGTGGAGATACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CAA 90 bp | CTTAAGTGGTGTGGTGAAATGAGGTACCAGTCTGCTGTGGCAACCCCGAGAAAGATGTATGCAATGCACTaGTTCCTGTGGATGTGTGCA | + |
|
Preference number: 3 (lower is better) Translates to: LKWCGEMRYQSAVATPRKMYAMH*FLWMCA Trigger: TGCACACATCCACAGGAACAAGTGCATTGCATACAT...CTTTCTCGGGGTTGCCACAGCAGACTGGTACCTCATTTCACCACACCACTTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CAA 90 bp | CAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTTGGACTAAGGGCCATTTGATCTaGAGCAGCCATAGGAAAGAA | + |
|
Preference number: 3 (lower is better) Translates to: QLSSWKWKPFFLSYGAWTKGHLI*SSHRKE Trigger: TTCTTTCCTATGGCTGCTCAAGATCAAATGGCCCTT...AGTCCAAGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR-3UTR CAA 90 bp | TTCAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTTGGAAAGGGCCATTTGATCTaGAGCAGCCATAGGAAAGAA | + |
|
Preference number: 3 (lower is better) Translates to: FSCPPGNGSLSFSPMELGKGHLI*SSHRKE Trigger: TTCTTTCCTATGGCTGCTCAAGATCAAATGGCCCTT...TCCAAGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR GCA 72 bp | CTCATCAGGAAACAGTACCACACTCCAGCGGAGAGATaGCAAACTGAAACTATGTGTGTTACATTCACAGGG | + |
|
Preference number: 3 (lower is better) Translates to: LIRKQYHTPAER*QTETMCVTFTG Trigger: CCCTGTGAATGTAACACACATAGTTTCAGTTTGGCATCTCTCCGCTGGAGTGTGGTACTGTTTCCTGATGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CCA 72 bp | TTCACAGGGATGCTGGGTGCTCGCTGTGCTTTTGCTTaGCAAACCAAACCAACATTTGTTCTCCATATTCCA | + |
|
Preference number: 3 (lower is better) Translates to: FTGMLGARCAFA*QTKPTFVLHIP Trigger: TGGAATATGGAGAACAAATGTTGGTTTGGTTTGCCAAGCAAAAGCACAGCGAGCACCCAGCATCCCTGTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CCA 72 bp | TCCCTTGCGGTCAGATGGGCTTGGGCGATCCCATTTTaGCCAAAGCAATGTGAGCAACATTTAAAGGTTATA | + |
|
Preference number: 3 (lower is better) Translates to: SLAVRWAWAIPF*PKQCEQHLKVI Trigger: TATAACCTTTAAATGTTGCTCACATTGCTTTGGCCAAAATGGGATCGCCCAAGCCCATCTGACCGCAAGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CCA 72 bp | AGAAGGAAGAAAGAAGGAAGGAAGGAAAGGAGAGTCTaGGGGGATGGGTTTTCTAACCTAACCACAAGTCAG | + |
|
Preference number: 3 (lower is better) Translates to: RRKKEGRKERRV*GDGFSNLTTSQ Trigger: CTGACTTGTGGTTAGGTTAGAAAACCCATCCCCCCAGACTCTCCTTTCCTTCCTTCCTTCTTTCTTCCTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CCA 72 bp | TTGAGTCTCTCAGTGTCAAGATGGAATGTGGCGAGGTaGGAAGGAAATATGTTCGAAATCGAGAGCTGTGAT | + |
|
Preference number: 3 (lower is better) Translates to: LSLSVSRWNVAR*EGNMFEIESCD Trigger: ATCACAGCTCTCGATTTCGAACATATTTCCTTCCCACCTCGCCACATTCCATCTTGACACTGAGAGACTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CCA 72 bp | TGGGGATACAGTCACAACCAACTTTTGCATGTTTACTaGGCATCCAAACTCGCACCTTCACATTGGCTCAAA | + |
|
Preference number: 3 (lower is better) Translates to: WGYSHNQLLHVY*ASKLAPSHWLK Trigger: TTTGAGCCAATGTGAAGGTGCGAGTTTGGATGCCCAGTAAACATGCAAAAGTTGGTTGTGACTGTATCCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CAA 90 bp | CTCCTTCAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTTTCTCTTGCCTTTCCTaGGGACATTTTGTTTTTGTT | + |
|
Preference number: 3 (lower is better) Translates to: LLQLSSWKWKPFFLSYGAFSCLS*GHFVFV Trigger: AACAAAAACAAAATGTCCCAAGGAAAGGCAAGAGAA...AGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTGAAGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR GCA 72 bp | GAGTATGTATGCAATGCACTTGTTCCTGTGGATGTGTaGACACATATAGAAAGCCAGAGGTTAGCACTGTGT | + |
|
Preference number: 3 (lower is better) Translates to: EYVCNALVPVDV*THIESQRLALC Trigger: ACACAGTGCTAACCTCTGGCTTTCTATATGTGTGCACACATCCACAGGAACAAGTGCATTGCATACATACTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CAA 90 bp | ACAAGCATGGTCAGCTTAACGGAACTCCTACTAGATACATCAGGATGCAAACTAAAGGGCCATTTGATCTaGAGCAGCCATAGGAAAGAA | + |
|
Preference number: 3 (lower is better) Translates to: TSMVSLTELLLDTSGCKLKGHLI*SSHRKE Trigger: TTCTTTCCTATGGCTGCTCAAGATCAAATGGCCCTT...TAGTTTGCATCCTGATGTATCTAGTAGGAGTTCCGTTAAGCTGACCATGCTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR GCA 72 bp | GCATGCCTTCTTTCATATATACCTACACCCTATCCATaGAAGGACAGTATTATCACATTCCCATCTGTCCTG | + |
|
Preference number: 3 (lower is better) Translates to: ACLLSYIPTPYP*KDSIITFPSVL Trigger: CAGGACAGATGGGAATGTGATAATACTGTCCTTGCATGGATAGGGTGTAGGTATATATGAAAGAAGGCATGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CAA 90 bp | GAAAAGTTAAGTCATAGGATTCTACATGGTAGAAGGGAGGCAGCTGTTGATGTCTTCTGTTTTCAAGGATaGAGTTGCACCTGTATAGCG | + |
|
Preference number: 3 (lower is better) Translates to: EKLSHRILHGRREAAVDVFCFQG*SCTCIA Trigger: CGCTATACAGGTGCAACTCAATCCTTGAAAACAGAA...GACATCAACAGCTGCCTCCCTTCTACCATGTAGAATCCTATGACTTAACTTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR TCA 72 bp | ATGGGCTTGGGCGATCCCATTTTGGCCAAAGCAATGTaGGCAACATTTAAAGGTTATAAATGGAAAATGGTC | + |
|
Preference number: 3 (lower is better) Translates to: MGLGDPILAKAM*ATFKGYKWKMV Trigger: GACCATTTTCCATTTATAACCTTTAAATGTTGCTCACATTGCTTTGGCCAAAATGGGATCGCCCAAGCCCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR TCA 72 bp | GCCATGTTTGGCTATTTGGTGAGTTCAAGGTCACCCTaGGATATCTGGGACTTTGTATCAAAAAGCAAGAAA | + |
|
Preference number: 3 (lower is better) Translates to: AMFGYLVSSRSP*DIWDFVSKSKK Trigger: TTTCTTGCTTTTTGATACAAAGTCCCAGATATCTCAGGGTGACCTTGAACTCACCAAATAGCCAAACATGGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR-3UTR CAA 90 bp | ACAAGCATGGTCAGCTTAACGGAACTCCTACTAGATACATCAGGATGCAAACTATTCTCTTGCCTTTCCTaGGGACATTTTGTTTTTGTT | + |
|
Preference number: 3 (lower is better) Translates to: TSMVSLTELLLDTSGCKLFSCLS*GHFVFV Trigger: AACAAAAACAAAATGTCCCAAGGAAAGGCAAGAGAA...TAGTTTGCATCCTGATGTATCTAGTAGGAGTTCCGTTAAGCTGACCATGCTTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR CCA 72 bp | CATGCAAGGACAGTATTATCACATTCCCATCTGTCCTaGAACAACAGTGACCGAAATCCAATTTTAGTTGTT | + |
|
Preference number: 3 (lower is better) Translates to: HARTVLSHSHLS*NNSDRNPILVV Trigger: AACAACTAAAATTGGATTTCGGTCACTGTTGTTCCAGGACAGATGGGAATGTGATAATACTGTCCTTGCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR TCA 72 bp | ATAAATAGAAGCCACAGATGTCTAAGTGGCTCCAAGTaGCAACAGAGGAGTCTCCTTCTATTAGAATTAAAG | + |
|
Preference number: 3 (lower is better) Translates to: INRSHRCLSGSK*QQRSLLLLELK Trigger: CTTTAATTCTAATAGAAGGAGACTCCTCTGTTGTCACTTGGAGCCACTTAGACATCTGTGGCTTCTATTTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CCA 72 bp | AATGGAAAATGGTCAATGTTCATCAAACCCATTAATTaGGCGAGTTTTAGAATCAACACCTGTGGGTGTGTT | + |
|
Preference number: 3 (lower is better) Translates to: NGKWSMFIKPIN*ASFRINTCGCV Trigger: AACACACCCACAGGTGTTGATTCTAAAACTCGCCCAATTAATGGGTTTGATGAACATTGACCATTTTCCATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CCA 72 bp | CAATGTGAGCAACATTTAAAGGTTATAAATGGAAAATaGTCAATGTTCATCAAACCCATTAATTGGGCGAGT | + |
|
Preference number: 3 (lower is better) Translates to: QCEQHLKVINGK*SMFIKPINWAS Trigger: ACTCGCCCAATTAATGGGTTTGATGAACATTGACCATTTTCCATTTATAACCTTTAAATGTTGCTCACATTG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| CDS-3UTR CCA 90 bp | CCAACTGTCCTTAAGAGAGAATTCTGCGCAGTTATCCAGAGGAGGGCCTCTGGGCCCGCGGTCCCCCACTaGCTCCGCGTCCTGTCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: PTVLKREFCAVIQRRASGPAVPH*LRVLSA Trigger: AGCGGACAGGACGCGGAGCCAGTGGGGGACCGCGGG...CCCAGAGGCCCTCCTCTGGATAACTGCGCAGAATTCTCTCTTAAGGACAGTTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS-3UTR CCA 90 bp | CAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTTGGACTCCCGCGGTCCCCCACTaGCTCCGCGTCCTGTCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: QLSSWKWKPFFLSYGAWTPAVPH*LRVLSA Trigger: AGCGGACAGGACGCGGAGCCAGTGGGGGACCGCGGG...AGTCCAAGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS-3UTR CCA 90 bp | TTCAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTTGGACCCGCGGTCCCCCACTaGCTCCGCGTCCTGTCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: FSCPPGNGSLSFSPMELGPAVPH*LRVLSA Trigger: AGCGGACAGGACGCGGAGCCAGTGGGGGACCGCGGG...TCCAAGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS-3UTR GCA 90 bp | CACCCCGATTCCAGTGCTAGCACACAGGAAACTAGACACACAACATACAAAGGGGCGAGTCGACAGAAATaGTGCAGAGTGGGTGCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: HPDSSASTQETRHTTYKGASRQK*CRVGAD Trigger: ATCAGCACCCACTCTGCAGCATTTCTGTCGACTCGC...CCCTTTGTATGTTGTGTGTCTAGTTTCCTGTGTGCTAGCACTGGAATCGGGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| CDS-3UTR GCA 90 bp | CTCCTTCAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTGCGAGTCGACAGAAATaGTGCAGAGTGGGTGCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: LLQLSSWKWKPFFLSYGAASRQK*CRVGAD Trigger: ATCAGCACCCACTCTGCAGCATTTCTGTCGACTCGC...AGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTGAAGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR CAA 72 bp | GCCGTCAATCATCTCAGCAAGCATGGGATCCCAAGCTaGGTTTTAACTTGGGTTAAAGCAATCGGCGAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: AVNHLSKHGIPS*VLTWVKAIGEG Trigger: CCCCTCGCCGATTGCTTTAACCCAAGTTAAAACCAAGCTTGGGATCCCATGCTTGCTGAGATGATTGACGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| CDS-3UTR GCA 90 bp | CCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTTGGACTTTTGACCGCGAGTCGACAGAAATaGTGCAGAGTGGGTGCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: PPGNGSLSFSPMELGLLTASRQK*CRVGAD Trigger: ATCAGCACCCACTCTGCAGCATTTCTGTCGACTCGC...GGTCAAAAGTCCAAGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS-3UTR CCA 90 bp | TGTAAGAATCAAGAGCCATCTTGGGCCAGGAGTGCAAGGGCAATGTCCTGTGAGTACTTCACCTTCCCTTaGGCCCCGAGTTTCTTTATC | + |
|
Preference number: 4 (lower is better) Translates to: CKNQEPSWARSARAMSCEYFTFP*APSFFI Trigger: GATAAAGAAACTCGGGGCCCAAGGGAAGGTGAAGTA...CTCACAGGACATTGCCCTTGCACTCCTGGCCCAAGATGGCTCTTGATTCTTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CAA 72 bp | ATGAAACCCACCGGCTCACCGGTGGGTAGAGCCACTTaGGTCTTTATTGATGTCCTCTCGCTATTGAAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: MKPTGSPVGRAT*VFIDVLSLLKR Trigger: TCTCTTCAATAGCGAGAGGACATCAATAAAGACCAAAGTGGCTCTACCCACCGGTGAGCCGGTGGGTTTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CAA 72 bp | TCTCTTCTGGTGGAGCTTGCCCAGAGTCTGATGGGTTaGATTGCATGTCCTAAGACTGTTCCATGCAGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: SLLVELAQSLMG*IACPKTVPCSS Trigger: GGAACTGCATGGAACAGTCTTAGGACATGCAATCAAACCCATCAGACTCTGGGCAAGCTCCACCAGAAGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| CDS-3UTR TCA 90 bp | TTCAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTTGGACTGCAGAGTGGGTGCTaGTGTATACAGAGGTTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: FSCPPGNGSLSFSPMELGLQSGC*CIQRFG Trigger: ACCAAACCTCTGTATACATCAGCACCCACTCTGCAG...TCCAAGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS-3UTR CCA 90 bp | CTGTCCTTAAGAGAGAATTCTGCGCAGTTATCCAGAGGAGGGCCTCTGGGTTCTCTGAATTTCCCATCTTaGTACTCAATCCGCAGGTTA | + |
|
Preference number: 4 (lower is better) Translates to: LSLRENSAQLSRGGPLGSLNFPS*YSIRRL Trigger: TAACCTGCGGATTGAGTACCAAGATGGGAAATTCAG...AGAACCCAGAGGCCCTCCTCTGGATAACTGCGCAGAATTCTCTCTTAAGGACAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS-3UTR CCA 90 bp | CTTAAGTGGTGTGGTGAAATGAGGTACCAGTCTGCTGTGGCAACCCCGAGAAAGCTGAATTTCCCATCTTaGTACTCAATCCGCAGGTTA | + |
|
Preference number: 4 (lower is better) Translates to: LKWCGEMRYQSAVATPRKLNFPS*YSIRRL Trigger: TAACCTGCGGATTGAGTACCAAGATGGGAAATTCAG...CTTTCTCGGGGTTGCCACAGCAGACTGGTACCTCATTTCACCACACCACTTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| CDS-3UTR CCA 90 bp | TGTAAGAATCAAGAGCCATCTTGGGCCAGGAGTGCAAGGGCAATGTCCTGTGAGATGTATACAGAGGTTTaGTCAGGTACAGGTGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: CKNQEPSWARSARAMSCEMYTEV*SGTGEQ Trigger: CTGTTCACCTGTACCTGACCAAACCTCTGTATACAT...CTCACAGGACATTGCCCTTGCACTCCTGGCCCAAGATGGCTCTTGATTCTTACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| CDS-3UTR GCA 90 bp | GAAAAGTTAAGTCATAGGATTCTACATGGTAGAAGGGAGGCAGCTGTTGATGTCGCGAGTCGACAGAAATaGTGCAGAGTGGGTGCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: EKLSHRILHGRREAAVDVASRQK*CRVGAD Trigger: ATCAGCACCCACTCTGCAGCATTTCTGTCGACTCGC...GACATCAACAGCTGCCTCCCTTCTACCATGTAGAATCCTATGACTTAACTTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS-3UTR CCA 90 bp | CAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTTGGACTATGTATACAGAGGTTTaGTCAGGTACAGGTGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: QLSSWKWKPFFLSYGAWTMYTEV*SGTGEQ Trigger: CTGTTCACCTGTACCTGACCAAACCTCTGTATACAT...AGTCCAAGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS-3UTR TCA 90 bp | GAAAAGTTAAGTCATAGGATTCTACATGGTAGAAGGGAGGCAGCTGTTGATGTCCTGCAGAGTGGGTGCTaGTGTATACAGAGGTTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: EKLSHRILHGRREAAVDVLQSGC*CIQRFG Trigger: ACCAAACCTCTGTATACATCAGCACCCACTCTGCAG...GACATCAACAGCTGCCTCCCTTCTACCATGTAGAATCCTATGACTTAACTTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS-3UTR TCA 90 bp | ACAAGCATGGTCAGCTTAACGGAACTCCTACTAGATACATCAGGATGCAAACTACTGCAGAGTGGGTGCTaGTGTATACAGAGGTTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: TSMVSLTELLLDTSGCKLLQSGC*CIQRFG Trigger: ACCAAACCTCTGTATACATCAGCACCCACTCTGCAG...TAGTTTGCATCCTGATGTATCTAGTAGGAGTTCCGTTAAGCTGACCATGCTTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS-3UTR CCA 90 bp | TTCAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTTGGAATGTATACAGAGGTTTaGTCAGGTACAGGTGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: FSCPPGNGSLSFSPMELGMYTEV*SGTGEQ Trigger: CTGTTCACCTGTACCTGACCAAACCTCTGTATACAT...TCCAAGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS-3UTR CCA 90 bp | GAAAAGGGTCATAAAATAGTGATACAGGGCACAGCAGAGAGGCCTACGAGGCCTAGTTCCCCACACTCCTaGAATTTATATTCTTCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: EKGHKIVIQGTAERPTRPSSPHS*NLYSSK Trigger: CTTGGAAGAATATAAATTCCAGGAGTGTGGGGAACT...AGGCCTCGTAGGCCTCTCTGCTGTGCCCTGTATCACTATTTTATGACCCTTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CAA 72 bp | TTACATTCACAGGGATGCTGGGTGCTCGCTGTGCTTTaGCTTGGCAAACCAAACCAACATTTGTTCTCCATA | + |
|
Preference number: 4 (lower is better) Translates to: LHSQGCWVLAVL*LGKPNQHLFSI Trigger: TATGGAGAACAAATGTTGGTTTGGTTTGCCAAGCAAAAGCACAGCGAGCACCCAGCATCCCTGTGAATGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| 3UTR CAA 72 bp | CTCGCTGTGCTTTTGCTTGGCAAACCAAACCAACATTaGTTCTCCATATTCCATCGACGTGAGATCAGTAGA | + |
|
Preference number: 4 (lower is better) Translates to: LAVLLLGKPNQH*FSIFHRREISR Trigger: TCTACTGATCTCACGTCGATGGAATATGGAGAACAAATGTTGGTTTGGTTTGCCAAGCAAAAGCACAGCGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| CDS-3UTR CCA 90 bp | ACAAGCATGGTCAGCTTAACGGAACTCCTACTAGATACATCAGGATGCAAACTAATGTATACAGAGGTTTaGTCAGGTACAGGTGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: TSMVSLTELLLDTSGCKLMYTEV*SGTGEQ Trigger: CTGTTCACCTGTACCTGACCAAACCTCTGTATACAT...TAGTTTGCATCCTGATGTATCTAGTAGGAGTTCCGTTAAGCTGACCATGCTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| 3UTR CAA 72 bp | CAGAATTCCTTGAACAAAATTAAACGTGTGCTTGCTTaGAACTCTAAAGGCAAGTCATGGGACACCTTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: QNSLNKIKRVLA*NSKGKSWDTFL Trigger: CAGGAAGGTGTCCCATGACTTGCCTTTAGAGTTCAAAGCAAGCACACGTTTAATTTTGTTCAAGGAATTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| CDS-3UTR TCA 90 bp | GCAGATCACTGGCATATTGAATTTTTAAAGAGGCATGCCTTCTTTCATATATACCTGCAGAGTGGGTGCTaGTGTATACAGAGGTTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: ADHWHIEFLKRHAFFHIYLQSGC*CIQRFG Trigger: ACCAAACCTCTGTATACATCAGCACCCACTCTGCAG...GTATATATGAAAGAAGGCATGCCTCTTTAAAAATTCAATATGCCAGTGATCTGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| CDS-3UTR CCA 90 bp | GCAGATCACTGGCATATTGAATTTTTAAAGAGGCATGCCTTCTTTCATATATACTCTTTATCTTCAAAGTaGTCACAGTGTAATGATGTG | + |
|
Preference number: 4 (lower is better) Translates to: ADHWHIEFLKRHAFFHIYSLSSK*SQCNDV Trigger: CACATCATTACACTGTGACCACTTTGAAGATAAAGA...GTATATATGAAAGAAGGCATGCCTCTTTAAAAATTCAATATGCCAGTGATCTGC 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
||
| CDS CCA 90 bp | GTCGACAGAAATGCTGCAGAGTGGGTGCTGATGTATACAGAGGTTTaGTCAGGTACAGGTGAACAGTCCCATTCCGTGGGGCTTCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: VDRNAAEWVLMYTEV*SGTGEQSHSVGLLG Trigger: GCCCAGAAGCCCCACGGAATGGGACTGTTCACCTGTACCTGACCAAACCTCTGTATACATCAGCACCCACTCTGCAGCATTTCTGTCGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000020215.16 ENSMUST00000119917.2 ENSMUST00000139210.8 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS CCA 90 bp | AGGTTTGGTCAGGTACAGGTGAACAGTCCCATTCCGTGGGGCTTCTaGGCCTGTCCGTTTATCCTTGCACATCTGGACATAGTAGTCAAT | + |
|
Preference number: 5 (lower is better) Translates to: RFGQVQVNSPIPWGF*ACPFILAHLDIVVN Trigger: ATTGACTACTATGTCCAGATGTGCAAGGATAAACGGACAGGCCCAGAAGCCCCACGGAATGGGACTGTTCACCTGTACCTGACCAAACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000020215.16 ENSMUST00000119917.2 ENSMUST00000139210.8 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS CCA 90 bp | TGTATACAGAGGTTTGGTCAGGTACAGGTGAACAGTCCCATTCCGTaGGGCTTCTGGGCCTGTCCGTTTATCCTTGCACATCTGGACATA | + |
|
Preference number: 5 (lower is better) Translates to: CIQRFGQVQVNSPIP*GFWACPFILAHLDI Trigger: TATGTCCAGATGTGCAAGGATAAACGGACAGGCCCAGAAGCCCCACGGAATGGGACTGTTCACCTGTACCTGACCAAACCTCTGTATACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000020215.16 ENSMUST00000119917.2 ENSMUST00000139210.8 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS GCA 90 bp | CCCCAGATCGTACCGGTACATTTGTTAATGGCGAGTCGACAGAAATaGTGCAGAGTGGGTGCTGATGTATACAGAGGTTTGGTCAGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: PQIVPVHLLMASRQK*CRVGADVYRGLVRY Trigger: GTACCTGACCAAACCTCTGTATACATCAGCACCCACTCTGCAGCATTTCTGTCGACTCGCCATTAACAAATGTACCGGTACGATCTGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000020215.16 ENSMUST00000119917.2 ENSMUST00000139210.8 ENSMUST00000170690.8 ENSMUST00000172070.8 |
||
| CDS-3UTR CAA 90 bp | AGGTATCTCCACCCCGATTCCAGTGCTAGCACACAGGAAACTAGACACACAACACTACTTCACCTTCCCTaGGGCCCCGAGTTTCTTTAT | + |
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Preference number: 5 (lower is better) Translates to: RYLHPDSSASTQETRHTTLLHLP*GPEFLY Trigger: ATAAAGAAACTCGGGGCCCAAGGGAAGGTGAAGTAG...TGTTGTGTGTCTAGTTTCCTGTGTGCTAGCACTGGAATCGGGGTGGAGATACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| CDS GCA 90 bp | CAGATCGTACCGGTACATTTGTTAATGGCGAGTCGACAGAAATGCTaGAGAGTGGGTGCTGATGTATACAGAGGTTTGGTCAGGTACAGG | + |
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Preference number: 5 (lower is better) Translates to: QIVPVHLLMASRQKC*RVGADVYRGLVRYR Trigger: CCTGTACCTGACCAAACCTCTGTATACATCAGCACCCACTCTGCAGCATTTCTGTCGACTCGCCATTAACAAATGTACCGGTACGATCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000020215.16 ENSMUST00000119917.2 ENSMUST00000139210.8 ENSMUST00000170690.8 ENSMUST00000172070.8 |
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| CDS-3UTR CAA 90 bp | CTCCTTCAGCTGTCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTATCGTACCGGTACATTaGTTAATGGCGAGTCGACAG | + |
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Preference number: 5 (lower is better) Translates to: LLQLSSWKWKPFFLSYGAIVPVH*LMASRQ Trigger: CTGTCGACTCGCCATTAACAAATGTACCGGTACGAT...AGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGACAGCTGAAGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
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| CDS TCA 90 bp | ACATTTGTTAATGGCGAGTCGACAGAAATGCTGCAGAGTGGGTGCTaGTGTATACAGAGGTTTGGTCAGGTACAGGTGAACAGTCCCATT | + |
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Preference number: 5 (lower is better) Translates to: TFVNGESTEMLQSGC*CIQRFGQVQVNSPI Trigger: AATGGGACTGTTCACCTGTACCTGACCAAACCTCTGTATACATCAGCACCCACTCTGCAGCATTTCTGTCGACTCGCCATTAACAAATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000020215.16 ENSMUST00000119917.2 ENSMUST00000139210.8 ENSMUST00000170690.8 ENSMUST00000172070.8 |
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| CDS-3UTR CAA 90 bp | CCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTTGGACTTTTGACCTGTTTAAGCTTGGACTaGACACATATGATAGAATCC | + |
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Preference number: 5 (lower is better) Translates to: PPGNGSLSFSPMELGLLTCLSLD*THMIES Trigger: GGATTCTATCATATGTGTCAAGTCCAAGCTTAAACA...GGTCAAAAGTCCAAGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
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| CDS-3UTR CAA 90 bp | TCCTCCTGGAAATGGAAGCCTTTCTTTCTCTCCTATGGAGCTTGGACTTTTGACTGTTTAAGCTTGGACTaGACACATATGATAGAATCC | + |
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Preference number: 5 (lower is better) Translates to: SSWKWKPFFLSYGAWTFDCLSLD*THMIES Trigger: GGATTCTATCATATGTGTCAAGTCCAAGCTTAAACA...GTCAAAAGTCCAAGCTCCATAGGAGAGAAAGAAAGGCTTCCATTTCCAGGAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
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| CDS-3UTR CAA 90 bp | GAAAAGTTAAGTCATAGGATTCTACATGGTAGAAGGGAGGCAGCTGTTGATGTCTGTTTAAGCTTGGACTaGACACATATGATAGAATCC | + |
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Preference number: 5 (lower is better) Translates to: EKLSHRILHGRREAAVDVCLSLD*THMIES Trigger: GGATTCTATCATATGTGTCAAGTCCAAGCTTAAACA...GACATCAACAGCTGCCTCCCTTCTACCATGTAGAATCCTATGACTTAACTTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020215.16 ENSMUST00000170690.8 ENSMUST00000172070.8 |
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| CDS-3UTR CAA 90 bp | AGGCATGCCTTCTTTCATATATACCTACACCCTATCCATGCAAGGACAGTATTATGTTTAAGCTTGGACTaGACACATATGATAGAATCC | + |
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Preference number: 5 (lower is better) Translates to: RHAFFHIYLHPIHARTVLCLSLD*THMIES Trigger: GGATTCTATCATATGTGTCAAGTCCAAGCTTAAACA...TAATACTGTCCTTGCATGGATAGGGTGTAGGTATATATGAAAGAAGGCATGCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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| CDS CCA 72 bp | CAGGTACAGGTGAACAGTCCCATTCCGTGGGGCTTCTaGGCCTGTCCGTTTATCCTTGCACATCTGGACATA | + |
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Preference number: 6 (lower is better) Translates to: QVQVNSPIPWGF*ACPFILAHLDI Trigger: TATGTCCAGATGTGCAAGGATAAACGGACAGGCCCAGAAGCCCCACGGAATGGGACTGTTCACCTGTACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000020215.16 ENSMUST00000119917.2 ENSMUST00000139210.8 ENSMUST00000170690.8 ENSMUST00000172070.8 |
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| CDS CCA 72 bp | AGGTTTGGTCAGGTACAGGTGAACAGTCCCATTCCGTaGGGCTTCTGGGCCTGTCCGTTTATCCTTGCACAT | + |
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Preference number: 6 (lower is better) Translates to: RFGQVQVNSPIP*GFWACPFILAH Trigger: ATGTGCAAGGATAAACGGACAGGCCCAGAAGCCCCACGGAATGGGACTGTTCACCTGTACCTGACCAAACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000020215.16 ENSMUST00000119917.2 ENSMUST00000139210.8 ENSMUST00000170690.8 ENSMUST00000172070.8 |
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| CDS TCA 72 bp | AATGGCGAGTCGACAGAAATGCTGCAGAGTGGGTGCTaGTGTATACAGAGGTTTGGTCAGGTACAGGTGAAC | + |
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Preference number: 6 (lower is better) Translates to: NGESTEMLQSGC*CIQRFGQVQVN Trigger: GTTCACCTGTACCTGACCAAACCTCTGTATACATCAGCACCCACTCTGCAGCATTTCTGTCGACTCGCCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000020215.16 ENSMUST00000119917.2 ENSMUST00000139210.8 ENSMUST00000170690.8 ENSMUST00000172070.8 |
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| CDS GCA 72 bp | CCGGTACATTTGTTAATGGCGAGTCGACAGAAATGCTaGAGAGTGGGTGCTGATGTATACAGAGGTTTGGTC | + |
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Preference number: 6 (lower is better) Translates to: PVHLLMASRQKC*RVGADVYRGLV Trigger: GACCAAACCTCTGTATACATCAGCACCCACTCTGCAGCATTTCTGTCGACTCGCCATTAACAAATGTACCGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000020215.16 ENSMUST00000119917.2 ENSMUST00000139210.8 ENSMUST00000170690.8 ENSMUST00000172070.8 |
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| CDS GCA 72 bp | GTACCGGTACATTTGTTAATGGCGAGTCGACAGAAATaGTGCAGAGTGGGTGCTGATGTATACAGAGGTTTG | + |
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Preference number: 6 (lower is better) Translates to: VPVHLLMASRQK*CRVGADVYRGL Trigger: CAAACCTCTGTATACATCAGCACCCACTCTGCAGCATTTCTGTCGACTCGCCATTAACAAATGTACCGGTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000020215.16 ENSMUST00000119917.2 ENSMUST00000139210.8 ENSMUST00000170690.8 ENSMUST00000172070.8 |
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| CDS CCA 72 bp | CCTTCCCTTGGGCCCCGAGTTTCTTTATCTTCAAAGTaGTCACAGTGTAATGATGTGCCAGAAATGATGTTG | + |
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Preference number: 6 (lower is better) Translates to: PSLGPRVSLSSK*SQCNDVPEMML Trigger: CAACATCATTTCTGGCACATCATTACACTGTGACCACTTTGAAGATAAAGAAACTCGGGGCCCAAGGGAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139210.8 |
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