Pregenerated sensors for SOCS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038037Ensembl transcript IDs: ENSMUST00000038099.6, ENSMUST00000229866.2
Found 128 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTAGCTGCCTCCTCCCTCCACCCCCAAGCTCTTGCTGTGGGGATCTaGATGGTACCACAGTACTCACCAGGTCTCTGCCCTTCGCCCTGC | + |
|
Preference number: 1 (lower is better) Translates to: LAASSLHPQALAVGI*MVPQYSPGLCPSPC Trigger: GCAGGGCGAAGGGCAGAGACCTGGTGAGTACTGTGGTACCATGCAGATCCCCACAGCAAGAGCTTGGGGGTGGAGGGAGGAGGCAGCTAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR GCA 90 bp | CCAGGCGTCTGTCTCAGAGCCAGTGCTGGGTCCTTTCTAGTGCCCTaGTTGTGTCTTGGAACAGCCCTTCCAGCTGGGCTCCTAACAGCA | + |
|
Preference number: 1 (lower is better) Translates to: PGVCLRASAGSFLVP*LCLGTALPAGLLTA Trigger: TGCTGTTAGGAGCCCAGCTGGAAGGGCTGTTCCAAGACACAAGCAGGGCACTAGAAAGGACCCAGCACTGGCTCTGAGACAGACGCCTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR TCA 90 bp | GCTTCTCTATTCACCATGTCTGAAGGAGGGCCTGGTTCCAGCCTGTaGAACAGGGATGCCAGCAGTGCCACAGGGCCAACCAGAAGCCCA | + |
|
Preference number: 1 (lower is better) Translates to: ASLFTMSEGGPGSSL*NRDASSATGPTRSP Trigger: TGGGCTTCTGGTTGGCCCTGTGGCACTGCTGGCATCCCTGTTTCACAGGCTGGAACCAGGCCCTCCTTCAGACATGGTGAATAGAGAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR GCA 90 bp | GTCAAGCCAGCATGGCCCATCATCCCTCTGAAATGCTTGATGGCTTaGAGAACCACCACTCCTTCCAAAAACTCGGGGAGCCCTGGCCTC | + |
|
Preference number: 1 (lower is better) Translates to: VKPAWPIIPLKCLMA*RTTTPSKNSGSPGL Trigger: GAGGCCAGGGCTCCCCGAGTTTTTGGAAGGAGTGGTGGTTCTGCAAGCCATCAAGCATTTCAGAGGGATGATGGGCCATGCTGGCTTGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR CCA 90 bp | TCCATGCTCTCTCCTCACCTCCCTGAAGGACTGGCCATGCTGGGATaGAGAACCACAGCCATTCTAACGCTCCAGAGAAAGCCCAGACAG | + |
|
Preference number: 1 (lower is better) Translates to: SMLSPHLPEGLAMLG*RTTAILTLQRKPRQ Trigger: CTGTCTGGGCTTTCTCTGGAGCGTTAGAATGGCTGTGGTTCTCCATCCCAGCATGGCCAGTCCTTCAGGGAGGTGAGGAGAGAGCATGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR TCA 90 bp | AAGCCACTAGAAGCATGTCCCAGGCTGCAGGAGTCACAGAACTCATaGAGATGGTGTGGGATGTGGGCCCCTGATGACCAGCAAGCTCCA | + |
|
Preference number: 1 (lower is better) Translates to: KPLEACPRLQESQNS*RWCGMWAPDDQQAP Trigger: TGGAGCTTGCTGGTCATCAGGGGCCCACATCCCACACCATCTTCATGAGTTCTGTGACTCCTGCAGCCTGGGACATGCTTCTAGTGGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR TCA 90 bp | ATTCACACAGCAGGTTTGGTCCTCCATGCTCTCTCCTCACCTCCCTaGAGGACTGGCCATGCTGGGATGGAGAACCACAGCCATTCTAAC | + |
|
Preference number: 1 (lower is better) Translates to: IHTAGLVLHALSSPP*RTGHAGMENHSHSN Trigger: GTTAGAATGGCTGTGGTTCTCCATCCCAGCATGGCCAGTCCTTCAGGGAGGTGAGGAGAGAGCATGGAGGACCAAACCTGCTGTGTGAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR TCA 90 bp | AATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATGTCTaGAGGAGGGCCTGGTTCCAGCCTGTGAAACAGGGATGCCAGCAG | + |
|
Preference number: 1 (lower is better) Translates to: NPPGMLKNSFSIHHV*RRAWFQPVKQGCQQ Trigger: CTGCTGGCATCCCTGTTTCACAGGCTGGAACCAGGCCCTCCTTCAGACATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR CCA 90 bp | GTACACAAGGCAGAGTGGGGAGAGGAGGGAAAAGTCAAGCCAGCATaGCCCATCATCCCTCTGAAATGCTTGATGGCTTGCAGAACCACC | + |
|
Preference number: 1 (lower is better) Translates to: VHKAEWGEEGKVKPA*PIIPLKCLMACRTT Trigger: GGTGGTTCTGCAAGCCATCAAGCATTTCAGAGGGATGATGGGCCATGCTGGCTTGACTTTTCCCTCCTCTCCCCACTCTGCCTTGTGTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR GCA 90 bp | GAGGAGGGAAAAGTCAAGCCAGCATGGCCCATCATCCCTCTGAAATaGTTGATGGCTTGCAGAACCACCACTCCTTCCAAAAACTCGGGG | + |
|
Preference number: 1 (lower is better) Translates to: EEGKVKPAWPIIPLK*LMACRTTTPSKNSG Trigger: CCCCGAGTTTTTGGAAGGAGTGGTGGTTCTGCAAGCCATCAAGCATTTCAGAGGGATGATGGGCCATGCTGGCTTGACTTTTCCCTCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR CCA 90 bp | GATGCAGGATGGACAGTTAAAAGGCCCACCTCTCCAGTCCAGGAATaGTCTGTCGTCAATTACCCGTCTCTCAGTTTTCTCCTCTGTATA | + |
|
Preference number: 1 (lower is better) Translates to: DAGWTVKRPTSPVQE*SVVNYPSLSFLLCI Trigger: TATACAGAGGAGAAAACTGAGAGACGGGTAATTGACGACAGACCATTCCTGGACTGGAGAGGTGGGCCTTTTAACTGTCCATCCTGCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | GTGCCACAGGGCCAACCAGAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACAAACTCGGGGAGCCCTaGCCTCTCTGCCCCACCCTC | + |
|
Preference number: 2 (lower is better) Translates to: VPQGQPEAQVKGNCFKGDKLGEP*PLCPTL Trigger: GAGGGTGGGGCAGAGAGGCCAGGGCTCCCCGAGTTT...GTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTCTGGTTGGCCCTGTGGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | CTTGCAGAACCACCACTCCTTCCAAAAACTCGGGGAGCCCTGGCCTCTCTGCCCGTGGAATTCAGGTCCTaGCCCCAGACACAAGCTGCT | + |
|
Preference number: 2 (lower is better) Translates to: LAEPPLLPKTRGALASLPVEFRS*PQTQAA Trigger: AGCAGCTTGTGTCTGGGGCCAGGACCTGAATTCCAC...GGGCAGAGAGGCCAGGGCTCCCCGAGTTTTTGGAAGGAGTGGTGGTTCTGCAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR GCA 90 bp | TGGGCCCCTGATGACCAGCAAGCTCCAGGCGTCTGTCTCAGAGCCAGTGCTGGGAAATGCTTGATGGCTTaGAGAACCACCACTCCTTCC | + |
|
Preference number: 2 (lower is better) Translates to: WAPDDQQAPGVCLRASAGKCLMA*RTTTPS Trigger: GGAAGGAGTGGTGGTTCTGCAAGCCATCAAGCATTT...CCCAGCACTGGCTCTGAGACAGACGCCTGGAGCTTGCTGGTCATCAGGGGCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | CTTGCAGAACCACCACTCCTTCCAAAAACTCGGGGAGCCCTGGCCTCTCTGCCCACTAGCCTGGAAGTTTaGTCCCCATCACTGTGGGTG | + |
|
Preference number: 2 (lower is better) Translates to: LAEPPLLPKTRGALASLPTSLEV*SPSLWV Trigger: CACCCACAGTGATGGGGACCAAACTTCCAGGCTAGT...GGGCAGAGAGGCCAGGGCTCCCCGAGTTTTTGGAAGGAGTGGTGGTTCTGCAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR CAA 90 bp | TTGTGTCTTGGAACAGCCCTTCCAGCTGGGCTCCTAACAGCACCATaGCTTCAGAGGCCCAGAGGCAAAGGGAATTGCCCAAGCCACCAG | + |
|
Preference number: 2 (lower is better) Translates to: LCLGTALPAGLLTAP*LQRPRGKGNCPSHQ Trigger: CTGGTGGCTTGGGCAATTCCCTTTGCCTCTGGGCCTCTGAAGCAATGGTGCTGTTAGGAGCCCAGCTGGAAGGGCTGTTCCAAGACACAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | TGGGCCCCTGATGACCAGCAAGCTCCAGGCGTCTGTCTCAGAGCCAGTGCTGGGCAAATTGATGCAGGATaGACAGTTAAAAGGCCCACC | + |
|
Preference number: 2 (lower is better) Translates to: WAPDDQQAPGVCLRASAGQIDAG*TVKRPT Trigger: GGTGGGCCTTTTAACTGTCCATCCTGCATCAATTTG...CCCAGCACTGGCTCTGAGACAGACGCCTGGAGCTTGCTGGTCATCAGGGGCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR TCA 90 bp | AGCTCTTGCTGTGGGGATCTGCATGGTACCACAGTACTCACCAGGTCTCTGCCCTTCGCCCTGCTAGACTaGAAAGCAGCATGGGGAGAA | + |
|
Preference number: 2 (lower is better) Translates to: SSCCGDLHGTTVLTRSLPFALLD*KAAWGE Trigger: TTCTCCCCATGCTGCTTTTCAGTCTAGCAGGGCGAA...GGGCAGAGACCTGGTGAGTACTGTGGTACCATGCAGATCCCCACAGCAAGAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR GCA 90 bp | CTTGCAGAACCACCACTCCTTCCAAAAACTCGGGGAGCCCTGGCCTCTCTGCCCCCGACCCCTGGTTTGTaGAAAGATACTGGGAATATG | + |
|
Preference number: 2 (lower is better) Translates to: LAEPPLLPKTRGALASLPPTPGL*KDTGNM Trigger: CATATTCCCAGTATCTTTGCACAAACCAGGGGTCGG...GGGCAGAGAGGCCAGGGCTCCCCGAGTTTTTGGAAGGAGTGGTGGTTCTGCAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR GCA 90 bp | GTGCCACAGGGCCAACCAGAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACAGAGGCAAAGGGAATTaGCCAAGCCACCAGCAGCAC | + |
|
Preference number: 2 (lower is better) Translates to: VPQGQPEAQVKGNCFKGDRGKGN*PSHQQH Trigger: GTGCTGCTGGTGGCTTGGGCAATTCCCTTTGCCTCT...GTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTCTGGTTGGCCCTGTGGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR GCA 90 bp | TCCTCCCTCCACCCCCAAGCTCTTGCTGTGGGGATCTGCATGGTACCACAGTACAAGCATGTCCCAGGCTaGAGGAGTCACAGAACTCAT | + |
|
Preference number: 2 (lower is better) Translates to: SSLHPQALAVGICMVPQYKHVPG*RSHRTH Trigger: ATGAGTTCTGTGACTCCTGCAGCCTGGGACATGCTT...GTACTGTGGTACCATGCAGATCCCCACAGCAAGAGCTTGGGGGTGGAGGGAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | CTTGCAGAACCACCACTCCTTCCAAAAACTCGGGGAGCCCTGGCCTCTCTGCCCTGGTCCCCATCACTGTaGGTGGAGATGTATATGATG | + |
|
Preference number: 2 (lower is better) Translates to: LAEPPLLPKTRGALASLPWSPSL*VEMYMM Trigger: CATCATATACATCTCCACCCACAGTGATGGGGACCA...GGGCAGAGAGGCCAGGGCTCCCCGAGTTTTTGGAAGGAGTGGTGGTTCTGCAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | AAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATGTCTGAAGGAGAAACTCGGGGAGCCCTaGCCTCTCTGCCCCACCCTC | + |
|
Preference number: 2 (lower is better) Translates to: KSPWHAEEQLLYSPCLKEKLGEP*PLCPTL Trigger: GAGGGTGGGGCAGAGAGGCCAGGGCTCCCCGAGTTT...CTCCTTCAGACATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | TCTAGTGCCCTGCTTGTGTCTTGGAACAGCCCTTCCAGCTGGGCTCCTAACAGCGTACACAAGGCAGAGTaGGGAGAGGAGGGAAAAGTC | + |
|
Preference number: 2 (lower is better) Translates to: SSALLVSWNSPSSWAPNSVHKAE*GEEGKV Trigger: GACTTTTCCCTCCTCTCCCCACTCTGCCTTGTGTAC...GCTGTTAGGAGCCCAGCTGGAAGGGCTGTTCCAAGACACAAGCAGGGCACTAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | GTGCCACAGGGCCAACCAGAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACTCTCAGAGCCAGTGCTaGGTCCTTTCTAGTGCCCTG | + |
|
Preference number: 2 (lower is better) Translates to: VPQGQPEAQVKGNCFKGDSQSQC*VLSSAL Trigger: CAGGGCACTAGAAAGGACCCAGCACTGGCTCTGAGA...GTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTCTGGTTGGCCCTGTGGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR TCA 90 bp | CTTGCTGTGGGGATCTGCATGGTACCACAGTACTCACCAGGTCTCTGCCCTTCGGAGTCACAGAACTCATaGAGATGGTGTGGGATGTGG | + |
|
Preference number: 2 (lower is better) Translates to: LAVGICMVPQYSPGLCPSESQNS*RWCGMW Trigger: CCACATCCCACACCATCTTCATGAGTTCTGTGACTC...CGAAGGGCAGAGACCTGGTGAGTACTGTGGTACCATGCAGATCCCCACAGCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR TCA 90 bp | AAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATGTCTGAAGGAGCTCTCCTCACCTCCCTaGAGGACTGGCCATGCTGGG | + |
|
Preference number: 2 (lower is better) Translates to: KSPWHAEEQLLYSPCLKELSSPP*RTGHAG Trigger: CCCAGCATGGCCAGTCCTTCAGGGAGGTGAGGAGAG...CTCCTTCAGACATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR GCA 90 bp | TCCTCCCTCCACCCCCAAGCTCTTGCTGTGGGGATCTGCATGGTACCACAGTACCCGACCCCTGGTTTGTaGAAAGATACTGGGAATATG | + |
|
Preference number: 2 (lower is better) Translates to: SSLHPQALAVGICMVPQYPTPGL*KDTGNM Trigger: CATATTCCCAGTATCTTTGCACAAACCAGGGGTCGG...GTACTGTGGTACCATGCAGATCCCCACAGCAAGAGCTTGGGGGTGGAGGGAGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR GCA 90 bp | GCCACTAGAAGCATGTCCCAGGCTGCAGGAGTCACAGAACTCATGAAGATGGTGCTGTCTCAGAGCCAGTaGTGGGTCCTTTCTAGTGCC | + |
|
Preference number: 2 (lower is better) Translates to: ATRSMSQAAGVTELMKMVLSQSQ*WVLSSA Trigger: GGCACTAGAAAGGACCCAGCACTGGCTCTGAGACAG...CACCATCTTCATGAGTTCTGTGACTCCTGCAGCCTGGGACATGCTTCTAGTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | CAGTCCAGGAATGGTCTGTCGTCAATTACCCGTCTCTCAGTTTTCTCCTCTGTACCCACCCCTGAGAGGTaGGATGAGGTCTCCAGCCAG | + |
|
Preference number: 2 (lower is better) Translates to: QSRNGLSSITRLSVFSSVPTPER*DEVSSQ Trigger: CTGGCTGGAGACCTCATCCCACCTCTCAGGGGTGGG...TACAGAGGAGAAAACTGAGAGACGGGTAATTGACGACAGACCATTCCTGGACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR TCA 90 bp | AAAAGCAGCATGGGGAGAACCTTATTCATTCACACAGCAGGTTTGGTCCTCCATCTCTCCTCACCTCCCTaGAGGACTGGCCATGCTGGG | + |
|
Preference number: 2 (lower is better) Translates to: KSSMGRTLFIHTAGLVLHLSSPP*RTGHAG Trigger: CCCAGCATGGCCAGTCCTTCAGGGAGGTGAGGAGAG...ATGGAGGACCAAACCTGCTGTGTGAATGAATAAGGTTCTCCCCATGCTGCTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR GCA 90 bp | CTTCAGATAGGAAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATCAGCACCCAGGCCCCTaGCACCACAGACCACAAAGC | + |
|
Preference number: 2 (lower is better) Translates to: LQIGNPPGMLKNSFSIHHQHPGP*HHRPQS Trigger: GCTTTGTGGTCTGTGGTGGCAGGGGCCTGGGTGCTG...ATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTTCCTATCTGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR GCA 90 bp | GAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACCTGGAACTGGTGAGTACCAGGTTTGGTCCTCCATaGTCTCTCCTCACCTCCCTG | + |
|
Preference number: 2 (lower is better) Translates to: EAQVKGNCFKGDLELVSTRFGPP*SLLTSL Trigger: CAGGGAGGTGAGGAGAGAGCATGGAGGACCAAACCT...GGTACTCACCAGTTCCAGGTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | TCCAGGAATGGTCTGTCGTCAATTACCCGTCTCTCAGTTTTCTCCTCTGTATACCCCACCCCTGAGAGGTaGGATGAGGTCTCCAGCCAG | + |
|
Preference number: 2 (lower is better) Translates to: SRNGLSSITRLSVFSSVYPTPER*DEVSSQ Trigger: CTGGCTGGAGACCTCATCCCACCTCTCAGGGGTGGG...GTATACAGAGGAGAAAACTGAGAGACGGGTAATTGACGACAGACCATTCCTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | GAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACCTGGAACTGGTGAGTACCAAGGACTGGCCATGCTaGGATGGAGAACCACAGCCA | + |
|
Preference number: 2 (lower is better) Translates to: EAQVKGNCFKGDLELVSTKDWPC*DGEPQP Trigger: TGGCTGTGGTTCTCCATCCCAGCATGGCCAGTCCTT...GGTACTCACCAGTTCCAGGTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR GCA 90 bp | GTGCCACAGGGCCAACCAGAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACAAATGCTTGATGGCTTaGAGAACCACCACTCCTTCC | + |
|
Preference number: 2 (lower is better) Translates to: VPQGQPEAQVKGNCFKGDKCLMA*RTTTPS Trigger: GGAAGGAGTGGTGGTTCTGCAAGCCATCAAGCATTT...GTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTCTGGTTGGCCCTGTGGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | AACGCTCCAGAGAAAGCCCAGACAGTGTCAGTGTGCCCAGAGCAGCCACTTCCTGGGAGGGCTCCCACGTaGTTCCAGAAAAATAATAAT | + |
|
Preference number: 2 (lower is better) Translates to: NAPEKAQTVSVCPEQPLPGRAPT*FQKNNN Trigger: ATTATTATTTTTCTGGAACCACGTGGGAGCCCTCCC...AGGAAGTGGCTGCTCTGGGCACACTGACACTGTCTGGGCTTTCTCTGGAGCGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | CCAGCATGGCCCATCATCCCTCTGAAATGCTTGATGGCTTGCAGAACCACCACTTGGTCCCCATCACTGTaGGTGGAGATGTATATGATG | + |
|
Preference number: 2 (lower is better) Translates to: PAWPIIPLKCLMACRTTTWSPSL*VEMYMM Trigger: CATCATATACATCTCCACCCACAGTGATGGGGACCA...AGTGGTGGTTCTGCAAGCCATCAAGCATTTCAGAGGGATGATGGGCCATGCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | AAAAGCAGCATGGGGAGAACCTTATTCATTCACACAGCAGGTTTGGTCCTCCATGCCCTGCTTGTGTCTTaGAACAGCCCTTCCAGCTGG | + |
|
Preference number: 2 (lower is better) Translates to: KSSMGRTLFIHTAGLVLHALLVS*NSPSSW Trigger: CCAGCTGGAAGGGCTGTTCCAAGACACAAGCAGGGC...ATGGAGGACCAAACCTGCTGTGTGAATGAATAAGGTTCTCCCCATGCTGCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | AAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATGTCTGAAGGAGAGATGGTGTGGGATGTaGGCCCCTGATGACCAGCAA | + |
|
Preference number: 2 (lower is better) Translates to: KSPWHAEEQLLYSPCLKERWCGM*APDDQQ Trigger: TTGCTGGTCATCAGGGGCCCACATCCCACACCATCT...CTCCTTCAGACATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR GCA 90 bp | AAAAGCAGCATGGGGAGAACCTTATTCATTCACACAGCAGGTTTGGTCCTCCATAGAGGCAAAGGGAATTaGCCAAGCCACCAGCAGCAC | + |
|
Preference number: 2 (lower is better) Translates to: KSSMGRTLFIHTAGLVLHRGKGN*PSHQQH Trigger: GTGCTGCTGGTGGCTTGGGCAATTCCCTTTGCCTCT...ATGGAGGACCAAACCTGCTGTGTGAATGAATAAGGTTCTCCCCATGCTGCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR GCA 90 bp | CTTCAGATAGGAAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATCTGAAGGACTGGCCATaGTGGGATGGAGAACCACAG | + |
|
Preference number: 2 (lower is better) Translates to: LQIGNPPGMLKNSFSIHHLKDWP*WDGEPQ Trigger: CTGTGGTTCTCCATCCCAGCATGGCCAGTCCTTCAG...ATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTTCCTATCTGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR GCA 90 bp | CTTCAGATAGGAAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATAGGTTTGGTCCTCCATaGTCTCTCCTCACCTCCCTG | + |
|
Preference number: 2 (lower is better) Translates to: LQIGNPPGMLKNSFSIHHRFGPP*SLLTSL Trigger: CAGGGAGGTGAGGAGAGAGCATGGAGGACCAAACCT...ATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTTCCTATCTGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | CTTCAGATAGGAAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATACCCTCCCCGACCCCTaGTTTGTGCAAAGATACTGG | + |
|
Preference number: 2 (lower is better) Translates to: LQIGNPPGMLKNSFSIHHTLPDP*FVQRYW Trigger: CCAGTATCTTTGCACAAACCAGGGGTCGGGGAGGGT...ATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTTCCTATCTGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | AAAAGCAGCATGGGGAGAACCTTATTCATTCACACAGCAGGTTTGGTCCTCCATACCCTCCCCGACCCCTaGTTTGTGCAAAGATACTGG | + |
|
Preference number: 2 (lower is better) Translates to: KSSMGRTLFIHTAGLVLHTLPDP*FVQRYW Trigger: CCAGTATCTTTGCACAAACCAGGGGTCGGGGAGGGT...ATGGAGGACCAAACCTGCTGTGTGAATGAATAAGGTTCTCCCCATGCTGCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | AAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATGTCTGAAGGAGGTACACAAGGCAGAGTaGGGAGAGGAGGGAAAAGTC | + |
|
Preference number: 2 (lower is better) Translates to: KSPWHAEEQLLYSPCLKEVHKAE*GEEGKV Trigger: GACTTTTCCCTCCTCTCCCCACTCTGCCTTGTGTAC...CTCCTTCAGACATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | CTTCAGATAGGAAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATAAGGACTGGCCATGCTaGGATGGAGAACCACAGCCA | + |
|
Preference number: 2 (lower is better) Translates to: LQIGNPPGMLKNSFSIHHKDWPC*DGEPQP Trigger: TGGCTGTGGTTCTCCATCCCAGCATGGCCAGTCCTT...ATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTTCCTATCTGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR TCA 90 bp | CTTCAGATAGGAAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATGAGTCACAGAACTCATaGAGATGGTGTGGGATGTGG | + |
|
Preference number: 2 (lower is better) Translates to: LQIGNPPGMLKNSFSIHHESQNS*RWCGMW Trigger: CCACATCCCACACCATCTTCATGAGTTCTGTGACTC...ATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTTCCTATCTGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | CTTCAGATAGGAAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATTTCACACAGCAGGTTTaGTCCTCCATGCTCTCTCCT | + |
|
Preference number: 2 (lower is better) Translates to: LQIGNPPGMLKNSFSIHHFTQQV*SSMLSP Trigger: AGGAGAGAGCATGGAGGACCAAACCTGCTGTGTGAA...ATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTTCCTATCTGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR TCA 90 bp | CTTCAGATAGGAAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATAACCAGAAGCCCAGGTaGAGGGCAACTGTTTTAAAG | + |
|
Preference number: 2 (lower is better) Translates to: LQIGNPPGMLKNSFSIHHNQKPR*RATVLK Trigger: CTTTAAAACAGTTGCCCTTCACCTGGGCTTCTGGTT...ATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTTCCTATCTGAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | AAAAGCAGCATGGGGAGAACCTTATTCATTCACACAGCAGGTTTGGTCCTCCATGGGAGGGCTCCCACGTaGTTCCAGAAAAATAATAAT | + |
|
Preference number: 2 (lower is better) Translates to: KSSMGRTLFIHTAGLVLHGRAPT*FQKNNN Trigger: ATTATTATTTTTCTGGAACCACGTGGGAGCCCTCCC...ATGGAGGACCAAACCTGCTGTGTGAATGAATAAGGTTCTCCCCATGCTGCTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CCA 90 bp | AAAAGCAGCATGGGGAGAACCTTATTCATTCACACAGCAGGTTTGGTCCTCCATTTTGTGCAAAGATACTaGGAATATGTAAACATGGAG | + |
|
Preference number: 2 (lower is better) Translates to: KSSMGRTLFIHTAGLVLHFVQRY*EYVNME Trigger: CTCCATGTTTACATATTCCCAGTATCTTTGCACAAA...ATGGAGGACCAAACCTGCTGTGTGAATGAATAAGGTTCTCCCCATGCTGCTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR CCA 72 bp | CCCTCCACCCCCAAGCTCTTGCTGTGGGGATCTGCATaGTACCACAGTACTCACCAGGTCTCTGCCCTTCGC | + |
|
Preference number: 3 (lower is better) Translates to: PSTPKLLLWGSA*YHSTHQVSALR Trigger: GCGAAGGGCAGAGACCTGGTGAGTACTGTGGTACCATGCAGATCCCCACAGCAAGAGCTTGGGGGTGGAGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR TCA 72 bp | GCAGGTTTGGTCCTCCATGCTCTCTCCTCACCTCCCTaGAGGACTGGCCATGCTGGGATGGAGAACCACAGC | + |
|
Preference number: 3 (lower is better) Translates to: AGLVLHALSSPP*RTGHAGMENHS Trigger: GCTGTGGTTCTCCATCCCAGCATGGCCAGTCCTTCAGGGAGGTGAGGAGAGAGCATGGAGGACCAAACCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR TCA 72 bp | TTCACCATGTCTGAAGGAGGGCCTGGTTCCAGCCTGTaGAACAGGGATGCCAGCAGTGCCACAGGGCCAACC | + |
|
Preference number: 3 (lower is better) Translates to: FTMSEGGPGSSL*NRDASSATGPT Trigger: GGTTGGCCCTGTGGCACTGCTGGCATCCCTGTTTCACAGGCTGGAACCAGGCCCTCCTTCAGACATGGTGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CAA 90 bp | TCCTCCCTCCACCCCCAAGCTCTTGCTGTGGGGATCTGCATGGTACCACAGTACCTCCTAACAGCACCATaGCTTCAGAGGCCCAGAGGC | + |
|
Preference number: 3 (lower is better) Translates to: SSLHPQALAVGICMVPQYLLTAP*LQRPRG Trigger: GCCTCTGGGCCTCTGAAGCAATGGTGCTGTTAGGAG...GTACTGTGGTACCATGCAGATCCCCACAGCAAGAGCTTGGGGGTGGAGGGAGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CAA 90 bp | CTTGCAGAACCACCACTCCTTCCAAAAACTCGGGGAGCCCTGGCCTCTCTGCCCTCCCCGACCCCTGGTTaGTGCAAAGATACTGGGAAT | + |
|
Preference number: 3 (lower is better) Translates to: LAEPPLLPKTRGALASLPSPTPG*CKDTGN Trigger: ATTCCCAGTATCTTTGCACAAACCAGGGGTCGGGGA...GGGCAGAGAGGCCAGGGCTCCCCGAGTTTTTGGAAGGAGTGGTGGTTCTGCAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CAA 90 bp | CTTGCTGTGGGGATCTGCATGGTACCACAGTACTCACCAGGTCTCTGCCCTTCGTGCCCTGCTTGTGTCTaGGAACAGCCCTTCCAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: LAVGICMVPQYSPGLCPSCPACV*EQPFQL Trigger: CAGCTGGAAGGGCTGTTCCAAGACACAAGCAGGGCA...CGAAGGGCAGAGACCTGGTGAGTACTGTGGTACCATGCAGATCCCCACAGCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR GCA 72 bp | TGTCTCAGAGCCAGTGCTGGGTCCTTTCTAGTGCCCTaGTTGTGTCTTGGAACAGCCCTTCCAGCTGGGCTC | + |
|
Preference number: 3 (lower is better) Translates to: CLRASAGSFLVP*LCLGTALPAGL Trigger: GAGCCCAGCTGGAAGGGCTGTTCCAAGACACAAGCAGGGCACTAGAAAGGACCCAGCACTGGCTCTGAGACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR CCA 72 bp | AGTGCCCTGCTTGTGTCTTGGAACAGCCCTTCCAGCTaGGCTCCTAACAGCACCATTGCTTCAGAGGCCCAG | + |
|
Preference number: 3 (lower is better) Translates to: SALLVSWNSPSS*APNSTIASEAQ Trigger: CTGGGCCTCTGAAGCAATGGTGCTGTTAGGAGCCCAGCTGGAAGGGCTGTTCCAAGACACAAGCAGGGCACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR CCA 72 bp | CAGTGCTGGGTCCTTTCTAGTGCCCTGCTTGTGTCTTaGAACAGCCCTTCCAGCTGGGCTCCTAACAGCACC | + |
|
Preference number: 3 (lower is better) Translates to: QCWVLSSALLVS*NSPSSWAPNST Trigger: GGTGCTGTTAGGAGCCCAGCTGGAAGGGCTGTTCCAAGACACAAGCAGGGCACTAGAAAGGACCCAGCACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR TCA 72 bp | GAAGCATGTCCCAGGCTGCAGGAGTCACAGAACTCATaGAGATGGTGTGGGATGTGGGCCCCTGATGACCAG | + |
|
Preference number: 3 (lower is better) Translates to: EACPRLQESQNS*RWCGMWAPDDQ Trigger: CTGGTCATCAGGGGCCCACATCCCACACCATCTTCATGAGTTCTGTGACTCCTGCAGCCTGGGACATGCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR TCA 72 bp | TGCCAGCAGTGCCACAGGGCCAACCAGAAGCCCAGGTaGAGGGCAACTGTTTTAAAGGTGACCTGGAACTGG | + |
|
Preference number: 3 (lower is better) Translates to: CQQCHRANQKPR*RATVLKVTWNW Trigger: CCAGTTCCAGGTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTCTGGTTGGCCCTGTGGCACTGCTGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR TCA 72 bp | CTCACAAAGGGAAGAAGGGGCCAGCTCCAGGGAGTGTaGCGGGAGCCTTTATTCCTAGCTGTTCTACCTCAG | + |
|
Preference number: 3 (lower is better) Translates to: LTKGRRGQLQGV*REPLFLAVLPQ Trigger: CTGAGGTAGAACAGCTAGGAATAAAGGCTCCCGTCACACTCCCTGGAGCTGGCCCCTTCTTCCCTTTGTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR CCA 72 bp | GCAGAGTGGGGAGAGGAGGGAAAAGTCAAGCCAGCATaGCCCATCATCCCTCTGAAATGCTTGATGGCTTGC | + |
|
Preference number: 3 (lower is better) Translates to: AEWGEEGKVKPA*PIIPLKCLMAC Trigger: GCAAGCCATCAAGCATTTCAGAGGGATGATGGGCCATGCTGGCTTGACTTTTCCCTCCTCTCCCCACTCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR GCA 72 bp | GCATGGCCCATCATCCCTCTGAAATGCTTGATGGCTTaGAGAACCACCACTCCTTCCAAAAACTCGGGGAGC | + |
|
Preference number: 3 (lower is better) Translates to: AWPIIPLKCLMA*RTTTPSKNSGS Trigger: GCTCCCCGAGTTTTTGGAAGGAGTGGTGGTTCTGCAAGCCATCAAGCATTTCAGAGGGATGATGGGCCATGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR GCA 72 bp | AACCTTATTCATTCACACAGCAGGTTTGGTCCTCCATaGTCTCTCCTCACCTCCCTGAAGGACTGGCCATGC | + |
|
Preference number: 3 (lower is better) Translates to: NLIHSHSRFGPP*SLLTSLKDWPC Trigger: GCATGGCCAGTCCTTCAGGGAGGTGAGGAGAGAGCATGGAGGACCAAACCTGCTGTGTGAATGAATAAGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR CCA 72 bp | AGCGGCCATCTTCCCAGTCATAAACCACAACTAGCCTaGAAGTTTGGTCCCCATCACTGTGGGTGGAGATGT | + |
|
Preference number: 3 (lower is better) Translates to: SGHLPSHKPQLA*KFGPHHCGWRC Trigger: ACATCTCCACCCACAGTGATGGGGACCAAACTTCCAGGCTAGTTGTGGTTTATGACTGGGAAGATGGCCGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CAA 90 bp | TCCTCCCTCCACCCCCAAGCTCTTGCTGTGGGGATCTGCATGGTACCACAGTACGTCATCCATTTCAAATaGATGCAGGATGGACAGTTA | + |
|
Preference number: 3 (lower is better) Translates to: SSLHPQALAVGICMVPQYVIHFK*MQDGQL Trigger: TAACTGTCCATCCTGCATCAATTTGAAATGGATGAC...GTACTGTGGTACCATGCAGATCCCCACAGCAAGAGCTTGGGGGTGGAGGGAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR TCA 72 bp | GTACTCACCAGGTCTCTGCCCTTCGCCCTGCTAGACTaGAAAGCAGCATGGGGAGAACCTTATTCATTCACA | + |
|
Preference number: 3 (lower is better) Translates to: VLTRSLPFALLD*KAAWGEPYSFT Trigger: TGTGAATGAATAAGGTTCTCCCCATGCTGCTTTTCAGTCTAGCAGGGCGAAGGGCAGAGACCTGGTGAGTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CAA 90 bp | CTTGCTGTGGGGATCTGCATGGTACCACAGTACTCACCAGGTCTCTGCCCTTCGGTCATCCATTTCAAATaGATGCAGGATGGACAGTTA | + |
|
Preference number: 3 (lower is better) Translates to: LAVGICMVPQYSPGLCPSVIHFK*MQDGQL Trigger: TAACTGTCCATCCTGCATCAATTTGAAATGGATGAC...CGAAGGGCAGAGACCTGGTGAGTACTGTGGTACCATGCAGATCCCCACAGCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR GCA 72 bp | AAAGTCAAGCCAGCATGGCCCATCATCCCTCTGAAATaGTTGATGGCTTGCAGAACCACCACTCCTTCCAAA | + |
|
Preference number: 3 (lower is better) Translates to: KVKPAWPIIPLK*LMACRTTTPSK Trigger: TTTGGAAGGAGTGGTGGTTCTGCAAGCCATCAAGCATTTCAGAGGGATGATGGGCCATGCTGGCTTGACTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR CCA 72 bp | TGGACAGTTAAAAGGCCCACCTCTCCAGTCCAGGAATaGTCTGTCGTCAATTACCCGTCTCTCAGTTTTCTC | + |
|
Preference number: 3 (lower is better) Translates to: WTVKRPTSPVQE*SVVNYPSLSFL Trigger: GAGAAAACTGAGAGACGGGTAATTGACGACAGACCATTCCTGGACTGGAGAGGTGGGCCTTTTAACTGTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR-3UTR CAA 90 bp | AAAAGCAGCATGGGGAGAACCTTATTCATTCACACAGCAGGTTTGGTCCTCCATTCCCCGACCCCTGGTTaGTGCAAAGATACTGGGAAT | + |
|
Preference number: 3 (lower is better) Translates to: KSSMGRTLFIHTAGLVLHSPTPG*CKDTGN Trigger: ATTCCCAGTATCTTTGCACAAACCAGGGGTCGGGGA...ATGGAGGACCAAACCTGCTGTGTGAATGAATAAGGTTCTCCCCATGCTGCTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CCA 90 bp | TGGGCCCCTGATGACCAGCAAGCTCCAGGCGTCTGTCTCAGAGCCAGTGCTGGGCGGCTGCCGTCCAAGTaGAAGCGGCCGGCCTGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: WAPDDQQAPGVCLRASAGRLPSK*KRPAWK Trigger: CTTCCAGGCCGGCCGCTTCCACTTGGACGGCAGCCG...CCCAGCACTGGCTCTGAGACAGACGCCTGGAGCTTGCTGGTCATCAGGGGCCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR TCA 90 bp | CTGGGGGCAACACAGTACTCAGTGTCAGGGGCTGTCCCTGTAGGATCCCATCACGGACGAGGAGGGCTCTaGCCGCCGTCGGGGCTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: LGATQYSVSGAVPVGSHHGRGGL*PPSGLC Trigger: GCAGAGCCCCGACGGCGGTCAGAGCCCTCCTCGTCC...GTGATGGGATCCTACAGGGACAGCCCCTGACACTGAGTACTGTGTTGCCCCCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CCA 90 bp | TCCTCCCTCCACCCCCAAGCTCTTGCTGTGGGGATCTGCATGGTACCACAGTACAGTGTCGCCAGGGGCTaGGGCTGGGACCGCCGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: SSLHPQALAVGICMVPQYSVARG*GWDRRA Trigger: TGCCCGGCGGTCCCAGCCCCAGCCCCTGGCGACACT...GTACTGTGGTACCATGCAGATCCCCACAGCAAGAGCTTGGGGGTGGAGGGAGGA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | CTTGCAGAACCACCACTCCTTCCAAAAACTCGGGGAGCCCTGGCCTCTCTGCCCCGCGCACCAAGAAGGTaGCCACGGGCTCGGCACGCA | + |
|
Preference number: 4 (lower is better) Translates to: LAEPPLLPKTRGALASLPRAPRR*PRARHA Trigger: TGCGTGCCGAGCCCGTGGGCACCTTCTTGGTGCGCG...GGGCAGAGAGGCCAGGGCTCCCCGAGTTTTTGGAAGGAGTGGTGGTTCTGCAAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CCA 90 bp | AGCACCATTGCTTCAGAGGCCCAGAGGCAAAGGGAATTGCCCAAGCCACCAGCAAGTGTCGCCAGGGGCTaGGGCTGGGACCGCCGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: STIASEAQRQRELPKPPASVARG*GWDRRA Trigger: TGCCCGGCGGTCCCAGCCCCAGCCCCTGGCGACACT...TGCTGGTGGCTTGGGCAATTCCCTTTGCCTCTGGGCCTCTGAAGCAATGGTGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | CTTGCAGAACCACCACTCCTTCCAAAAACTCGGGGAGCCCTGGCCTCTCTGCCCCCGTCGGGGCTCTGCTaGCGGGGAGATCGCATTGTC | + |
|
Preference number: 4 (lower is better) Translates to: LAEPPLLPKTRGALASLPPSGLC*RGDRIV Trigger: GACAATGCGATCTCCCCGGCAGCAGAGCCCCGACGG...GGGCAGAGAGGCCAGGGCTCCCCGAGTTTTTGGAAGGAGTGGTGGTTCTGCAAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | TCCTCCCTCCACCCCCAAGCTCTTGCTGTGGGGATCTGCATGGTACCACAGTACCCGCCGTCGGGGCTCTaGTGCCGGGGAGATCGCATT | + |
|
Preference number: 4 (lower is better) Translates to: SSLHPQALAVGICMVPQYPPSGL*CRGDRI Trigger: AATGCGATCTCCCCGGCAGCAGAGCCCCGACGGCGG...GTACTGTGGTACCATGCAGATCCCCACAGCAAGAGCTTGGGGGTGGAGGGAGGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CCA 90 bp | CTTGCAGAACCACCACTCCTTCCAAAAACTCGGGGAGCCCTGGCCTCTCTGCCCTGGAAGCGGCCGGCCTaGAAGTGCACGCGGATGCTC | + |
|
Preference number: 4 (lower is better) Translates to: LAEPPLLPKTRGALASLPWKRPA*KCTRML Trigger: GAGCATCCGCGTGCACTTCCAGGCCGGCCGCTTCCA...GGGCAGAGAGGCCAGGGCTCCCCGAGTTTTTGGAAGGAGTGGTGGTTCTGCAAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | CCAGCATGGCCCATCATCCCTCTGAAATGCTTGATGGCTTGCAGAACCACCACTGCACGCAGCCGCTCGTaGGCCCCGTGCACGCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: PAWPIIPLKCLMACRTTTARSRS*APCTLR Trigger: CCTGAGCGTGCACGGGGCGCACGAGCGGCTGCGTGC...AGTGGTGGTTCTGCAAGCCATCAAGCATTTCAGAGGGATGATGGGCCATGCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | GCCACTAGAAGCATGTCCCAGGCTGCAGGAGTCACAGAACTCATGAAGATGGTGGCACGCAGCCGCTCGTaGGCCCCGTGCACGCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: ATRSMSQAAGVTELMKMVARSRS*APCTLR Trigger: CCTGAGCGTGCACGGGGCGCACGAGCGGCTGCGTGC...CACCATCTTCATGAGTTCTGTGACTCCTGCAGCCTGGGACATGCTTCTAGTGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR TCA 90 bp | GTGCCACAGGGCCAACCAGAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACGCGCGCTGGTCCGCGTaGTGCGCCGGTAATCGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: VPQGQPEAQVKGNCFKGDARWSA*CAGNRS Trigger: ACTCCGATTACCGGCGCATCACGCGGACCAGCGCGC...GTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTCTGGTTGGCCCTGTGGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | CCAGCATGGCCCATCATCCCTCTGAAATGCTTGATGGCTTGCAGAACCACCACTCGGCCGGCCTGGAAGTaGACGCGGATGCTCGTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: PAWPIIPLKCLMACRTTTRPAWK*TRMLVG Trigger: CCCCACGAGCATCCGCGTGCACTTCCAGGCCGGCCG...AGTGGTGGTTCTGCAAGCCATCAAGCATTTCAGAGGGATGATGGGCCATGCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | GAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACCTGGAACTGGTGAGTACCTGGCGACACAGCTCCTaGAGCGGCCGCACGCGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: EAQVKGNCFKGDLELVSTWRHSS*SGRTRR Trigger: GCGCCGCGTGCGGCCGCTGCAGGAGCTGTGTCGCCA...GGTACTCACCAGTTCCAGGTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CCA 90 bp | GTGCCACAGGGCCAACCAGAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACGCGGCCACGATGCGCTaGCGACACAGCTCCTGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: VPQGQPEAQVKGNCFKGDAATMR*RHSSCS Trigger: GCTGCAGGAGCTGTGTCGCCAGCGCATCGTGGCCGC...GTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTCTGGTTGGCCCTGTGGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | GCCACTAGAAGCATGTCCCAGGCTGCAGGAGTCACAGAACTCATGAAGATGGTGCGCGCACCAAGAAGGTaGCCACGGGCTCGGCACGCA | + |
|
Preference number: 4 (lower is better) Translates to: ATRSMSQAAGVTELMKMVRAPRR*PRARHA Trigger: TGCGTGCCGAGCCCGTGGGCACCTTCTTGGTGCGCG...CACCATCTTCATGAGTTCTGTGACTCCTGCAGCCTGGGACATGCTTCTAGTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | GAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACCTGGAACTGGTGAGTACCCGGCCGGCCTGGAAGTaGACGCGGATGCTCGTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: EAQVKGNCFKGDLELVSTRPAWK*TRMLVG Trigger: CCCCACGAGCATCCGCGTGCACTTCCAGGCCGGCCG...GGTACTCACCAGTTCCAGGTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR TCA 90 bp | TGTCGTCAATTACCCGTCTCTCAGTTTTCTCCTCTGTATACTGGGGGCAACACAGGACGAGGAGGGCTCTaGCCGCCGTCGGGGCTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: CRQLPVSQFSPLYTGGNTGRGGL*PPSGLC Trigger: GCAGAGCCCCGACGGCGGTCAGAGCCCTCCTCGTCC...TGTGTTGCCCCCAGTATACAGAGGAGAAAACTGAGAGACGGGTAATTGACGACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR TCA 90 bp | GAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACCTGGAACTGGTGAGTACCGCGCGCTGGTCCGCGTaGTGCGCCGGTAATCGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: EAQVKGNCFKGDLELVSTARWSA*CAGNRS Trigger: ACTCCGATTACCGGCGCATCACGCGGACCAGCGCGC...GGTACTCACCAGTTCCAGGTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | GCCACTAGAAGCATGTCCCAGGCTGCAGGAGTCACAGAACTCATGAAGATGGTGCCGTCGGGGCTCTGCTaGCGGGGAGATCGCATTGTC | + |
|
Preference number: 4 (lower is better) Translates to: ATRSMSQAAGVTELMKMVPSGLC*RGDRIV Trigger: GACAATGCGATCTCCCCGGCAGCAGAGCCCCGACGG...CACCATCTTCATGAGTTCTGTGACTCCTGCAGCCTGGGACATGCTTCTAGTGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | AGCACCATTGCTTCAGAGGCCCAGAGGCAAAGGGAATTGCCCAAGCCACCAGCAAGTGGGAGCGGAAGGTaGGGAAGTGAGTGTCGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: STIASEAQRQRELPKPPASGSGR*GSECRQ Trigger: CTGGCGACACTCACTTCCGCACCTTCCGCTCCCACT...TGCTGGTGGCTTGGGCAATTCCCTTTGCCTCTGGGCCTCTGAAGCAATGGTGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CCA 90 bp | GAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACCTGGAACTGGTGAGTACCGCGGCCACGATGCGCTaGCGACACAGCTCCTGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: EAQVKGNCFKGDLELVSTAATMR*RHSSCS Trigger: GCTGCAGGAGCTGTGTCGCCAGCGCATCGTGGCCGC...GGTACTCACCAGTTCCAGGTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | TCTAGTGCCCTGCTTGTGTCTTGGAACAGCCCTTCCAGCTGGGCTCCTAACAGCGATCGCATTGTCGGCTaGCACCTGGTTGCGTGCTAC | + |
|
Preference number: 4 (lower is better) Translates to: SSALLVSWNSPSSWAPNSDRIVG*HLVACY Trigger: GTAGCACGCAACCAGGTGGCAGCCGACAATGCGATC...GCTGTTAGGAGCCCAGCTGGAAGGGCTGTTCCAAGACACAAGCAGGGCACTAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | GTGCCACAGGGCCAACCAGAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACAGTGGGAGCGGAAGGTaGGGAAGTGAGTGTCGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: VPQGQPEAQVKGNCFKGDSGSGR*GSECRQ Trigger: CTGGCGACACTCACTTCCGCACCTTCCGCTCCCACT...GTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTCTGGTTGGCCCTGTGGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | AAGCCAGAGACCCTCCCCGACCCCTGGTTTGTGCAAAGATACTGGGAATATGTAGGAAGTGCACGCGGATaGTCGTGGGGCCCGAAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: KPETLPDPWFVQRYWEYVGSARG*SWGPKP Trigger: TGGCTTCGGGCCCCACGAGCATCCGCGTGCACTTCC...TACATATTCCCAGTATCTTTGCACAAACCAGGGGTCGGGGAGGGTCTCTGGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | TCCAGGAATGGTCTGTCGTCAATTACCCGTCTCTCAGTTTTCTCCTCTGTATACTGGCGACACAGCTCCTaGAGCGGCCGCACGCGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: SRNGLSSITRLSVFSSVYWRHSS*SGRTRR Trigger: GCGCCGCGTGCGGCCGCTGCAGGAGCTGTGTCGCCA...GTATACAGAGGAGAAAACTGAGAGACGGGTAATTGACGACAGACCATTCCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR CAA 72 bp | GGAACAGCCCTTCCAGCTGGGCTCCTAACAGCACCATaGCTTCAGAGGCCCAGAGGCAAAGGGAATTGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: GTALPAGLLTAP*LQRPRGKGNCP Trigger: TGGGCAATTCCCTTTGCCTCTGGGCCTCTGAAGCAATGGTGCTGTTAGGAGCCCAGCTGGAAGGGCTGTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | GCCACTAGAAGCATGTCCCAGGCTGCAGGAGTCACAGAACTCATGAAGATGGTGGATCGCATTGTCGGCTaGCACCTGGTTGCGTGCTAC | + |
|
Preference number: 4 (lower is better) Translates to: ATRSMSQAAGVTELMKMVDRIVG*HLVACY Trigger: GTAGCACGCAACCAGGTGGCAGCCGACAATGCGATC...CACCATCTTCATGAGTTCTGTGACTCCTGCAGCCTGGGACATGCTTCTAGTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CCA 90 bp | AAAAGCAGCATGGGGAGAACCTTATTCATTCACACAGCAGGTTTGGTCCTCCATCGGCTGCCGTCCAAGTaGAAGCGGCCGGCCTGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: KSSMGRTLFIHTAGLVLHRLPSK*KRPAWK Trigger: CTTCCAGGCCGGCCGCTTCCACTTGGACGGCAGCCG...ATGGAGGACCAAACCTGCTGTGTGAATGAATAAGGTTCTCCCCATGCTGCTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR GCA 90 bp | CTTCAGATAGGAAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATGGAAGTGCACGCGGATaGTCGTGGGGCCCGAAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: LQIGNPPGMLKNSFSIHHGSARG*SWGPKP Trigger: TGGCTTCGGGCCCCACGAGCATCCGCGTGCACTTCC...ATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTTCCTATCTGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CCA 90 bp | CAGTCCAGGAATGGTCTGTCGTCAATTACCCGTCTCTCAGTTTTCTCCTCTGTAGCACGCGGATGCTCGTaGGGCCCGAAGCCATCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: QSRNGLSSITRLSVFSSVARGCS*GPKPSS Trigger: TGAAGATGGCTTCGGGCCCCACGAGCATCCGCGTGC...TACAGAGGAGAAAACTGAGAGACGGGTAATTGACGACAGACCATTCCTGGACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CCA 90 bp | AAAAGCAGCATGGGGAGAACCTTATTCATTCACACAGCAGGTTTGGTCCTCCATTGGAAGCGGCCGGCCTaGAAGTGCACGCGGATGCTC | + |
|
Preference number: 4 (lower is better) Translates to: KSSMGRTLFIHTAGLVLHWKRPA*KCTRML Trigger: GAGCATCCGCGTGCACTTCCAGGCCGGCCGCTTCCA...ATGGAGGACCAAACCTGCTGTGTGAATGAATAAGGTTCTCCCCATGCTGCTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR TCA 90 bp | CAGTCCAGGAATGGTCTGTCGTCAATTACCCGTCTCTCAGTTTTCTCCTCTGTAAAGCCATCTTCACGCTaGGCGCGAAGAAGCAGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: QSRNGLSSITRLSVFSSVKPSSR*ARRSSS Trigger: GGAACTGCTTCTTCGCGCTCAGCGTGAAGATGGCTT...TACAGAGGAGAAAACTGAGAGACGGGTAATTGACGACAGACCATTCCTGGACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CCA 90 bp | CAGTCCAGGAATGGTCTGTCGTCAATTACCCGTCTCTCAGTTTTCTCCTCTGTAAAGAAGCAGTTCCGTTaGCGACTGTCGCGCACCAAG | + |
|
Preference number: 4 (lower is better) Translates to: QSRNGLSSITRLSVFSSVKKQFR*RLSRTK Trigger: CTTGGTGCGCGACAGTCGCCAACGGAACTGCTTCTT...TACAGAGGAGAAAACTGAGAGACGGGTAATTGACGACAGACCATTCCTGGACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CCA 90 bp | CTTCAGATAGGAAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATAAGAAGCAGTTCCGTTaGCGACTGTCGCGCACCAAG | + |
|
Preference number: 4 (lower is better) Translates to: LQIGNPPGMLKNSFSIHHKKQFR*RLSRTK Trigger: CTTGGTGCGCGACAGTCGCCAACGGAACTGCTTCTT...ATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTTCCTATCTGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| 3UTR CAA 72 bp | AGTCAGTCTGTATACCCCACTCCCAACCCAGGACGTTaGGCCAAAGCATACGCTCTAGGAATCTTTGTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SQSVYPTPNPGR*AKAYALGIFVS Trigger: AGAAACAAAGATTCCTAGAGCGTATGCTTTGGCCAAACGTCCTGGGTTGGGAGTGGGGTATACAGACTGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS CCA 90 bp | GGGATGCGCGCCAGGTTCTCGCGACCCACGGCGGCCACGATGCGCTaGCGACACAGCTCCTGCAGCGGCCGCACGCGGCGCTGGCGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: GMRARFSRPTAATMR*RHSSCSGRTRRWRS Trigger: GCTGCGCCAGCGCCGCGTGCGGCCGCTGCAGGAGCTGTGTCGCCAGCGCATCGTGGCCGCCGTGGGTCGCGAGAACCTGGCGCGCATCCC 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS GCA 90 bp | TTCTCGCGACCCACGGCGGCCACGATGCGCTGGCGACACAGCTCCTaGAGCGGCCGCACGCGGCGCTGGCGCAGCGGGGCCCCCAACATG | + |
|
Preference number: 5 (lower is better) Translates to: FSRPTAATMRWRHSS*SGRTRRWRSGAPNM Trigger: CATGTTGGGGGCCCCGCTGCGCCAGCGCCGCGTGCGGCCGCTGCAGGAGCTGTGTCGCCAGCGCATCGTGGCCGCCGTGGGTCGCGAGAA 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS GCA 90 bp | GCGCGAAGAAGCAGTTCCGTTGGCGACTGTCGCGCACCAAGAAGGTaGCCACGGGCTCGGCACGCAGCCGCTCGTGCGCCCCGTGCACGC | + |
|
Preference number: 5 (lower is better) Translates to: ARRSSSVGDCRAPRR*PRARHAAARAPRAR Trigger: GCGTGCACGGGGCGCACGAGCGGCTGCGTGCCGAGCCCGTGGGCACCTTCTTGGTGCGCGACAGTCGCCAACGGAACTGCTTCTTCGCGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS CCA 90 bp | CAGTCGAAGGTCTCGCGGCTGCCGTCCAAGTGGAAGCGGCCGGCCTaGAAGTGCACGCGGATGCTCGTGGGGCCCGAAGCCATCTTCACG | + |
|
Preference number: 5 (lower is better) Translates to: QSKVSRLPSKWKRPA*KCTRMLVGPEAIFT Trigger: CGTGAAGATGGCTTCGGGCCCCACGAGCATCCGCGTGCACTTCCAGGCCGGCCGCTTCCACTTGGACGGCAGCCGCGAGACCTTCGACTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS CCA 90 bp | AGCAGCTCGAAAAGGCAGTCGAAGGTCTCGCGGCTGCCGTCCAAGTaGAAGCGGCCGGCCTGGAAGTGCACGCGGATGCTCGTGGGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: SSSKRQSKVSRLPSK*KRPAWKCTRMLVGP Trigger: GGGCCCCACGAGCATCCGCGTGCACTTCCAGGCCGGCCGCTTCCACTTGGACGGCAGCCGCGAGACCTTCGACTGCCTTTTCGAGCTGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS TCA 90 bp | GTCCCCAATAGAAGCCGCAGGCGTCCAGGAGCGCGCTGGTCCGCGTaGTGCGCCGGTAATCGGAGTGGGAGCGGAAGGTGCGGAAGTGAG | + |
|
Preference number: 5 (lower is better) Translates to: VPNRSRRRPGARWSA*CAGNRSGSGRCGSE Trigger: CTCACTTCCGCACCTTCCGCTCCCACTCCGATTACCGGCGCATCACGCGGACCAGCGCGCTCCTGGACGCCTGCGGCTTCTATTGGGGAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS GCA 90 bp | CGTAGTGCTCCAGCAGCTCGAAAAGGCAGTCGAAGGTCTCGCGGCTaGCGTCCAAGTGGAAGCGGCCGGCCTGGAAGTGCACGCGGATGC | + |
|
Preference number: 5 (lower is better) Translates to: RSAPAARKGSRRSRG*RPSGSGRPGSARGC Trigger: GCATCCGCGTGCACTTCCAGGCCGGCCGCTTCCACTTGGACGGCAGCCGCGAGACCTTCGACTGCCTTTTCGAGCTGCTGGAGCACTACG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS TCA 90 bp | GGAAGTGCACGCGGATGCTCGTGGGGCCCGAAGCCATCTTCACGCTaGGCGCGAAGAAGCAGTTCCGTTGGCGACTGTCGCGCACCAAGA | + |
|
Preference number: 5 (lower is better) Translates to: GSARGCSWGPKPSSR*ARRSSSVGDCRAPR Trigger: TCTTGGTGCGCGACAGTCGCCAACGGAACTGCTTCTTCGCGCTCAGCGTGAAGATGGCTTCGGGCCCCACGAGCATCCGCGTGCACTTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CAA 90 bp | AGCTCTTGCTGTGGGGATCTGCATGGTACCACAGTACTCACCAGGTCTCTGCCCGCCGGGGAGATCGCATaGTCGGCTGCCACCTGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: SSCCGDLHGTTVLTRSLPAGEIA*SAATWL Trigger: CAACCAGGTGGCAGCCGACAATGCGATCTCCCCGGC...GGGCAGAGACCTGGTGAGTACTGTGGTACCATGCAGATCCCCACAGCAAGAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CAA 90 bp | GTGCCACAGGGCCAACCAGAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACGAAGAAGCAGTTCCGTaGGCGACTGTCGCGCACCAA | + |
|
Preference number: 5 (lower is better) Translates to: VPQGQPEAQVKGNCFKGDEEAVP*ATVAHQ Trigger: TTGGTGCGCGACAGTCGCCAACGGAACTGCTTCTTC...GTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTCTGGTTGGCCCTGTGGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CAA 90 bp | AAATCCCCCTGGCATGCTGAAGAACAGCTTCTCTATTCACCATGTCTGAAGGAGGCCGGGGAGATCGCATaGTCGGCTGCCACCTGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: KSPWHAEEQLLYSPCLKEAGEIA*SAATWL Trigger: CAACCAGGTGGCAGCCGACAATGCGATCTCCCCGGC...CTCCTTCAGACATGGTGAATAGAGAAGCTGTTCTTCAGCATGCCAGGGGGATTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS-3UTR CAA 90 bp | GAAGCCCAGGTGAAGGGCAACTGTTTTAAAGGTGACCTGGAACTGGTGAGTACCGAAGAAGCAGTTCCGTaGGCGACTGTCGCGCACCAA | + |
|
Preference number: 5 (lower is better) Translates to: EAQVKGNCFKGDLELVSTEEAVP*ATVAHQ Trigger: TTGGTGCGCGACAGTCGCCAACGGAACTGCTTCTTC...GGTACTCACCAGTTCCAGGTCACCTTTAAAACAGTTGCCCTTCACCTGGGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS CCA 72 bp | GCCAGGTTCTCGCGACCCACGGCGGCCACGATGCGCTaGCGACACAGCTCCTGCAGCGGCCGCACGCGGCGC | + |
|
Preference number: 6 (lower is better) Translates to: ARFSRPTAATMR*RHSSCSGRTRR Trigger: GCGCCGCGTGCGGCCGCTGCAGGAGCTGTGTCGCCAGCGCATCGTGGCCGCCGTGGGTCGCGAGAACCTGGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS GCA 72 bp | TGCGCGCCAGGTTCTCGCGACCCACGGCGGCCACGATaGGCTGGCGACACAGCTCCTGCAGCGGCCGCACGC | + |
|
Preference number: 6 (lower is better) Translates to: CAPGSRDPRRPR*AGDTAPAAAAR Trigger: GCGTGCGGCCGCTGCAGGAGCTGTGTCGCCAGCGCATCGTGGCCGCCGTGGGTCGCGAGAACCTGGCGCGCA 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS GCA 72 bp | AGCAGTTCCGTTGGCGACTGTCGCGCACCAAGAAGGTaGCCACGGGCTCGGCACGCAGCCGCTCGTGCGCCC | + |
|
Preference number: 6 (lower is better) Translates to: SSSVGDCRAPRR*PRARHAAARAP Trigger: GGGCGCACGAGCGGCTGCGTGCCGAGCCCGTGGGCACCTTCTTGGTGCGCGACAGTCGCCAACGGAACTGCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS TCA 72 bp | CGCGGATGCTCGTGGGGCCCGAAGCCATCTTCACGCTaGGCGCGAAGAAGCAGTTCCGTTGGCGACTGTCGC | + |
|
Preference number: 6 (lower is better) Translates to: RGCSWGPKPSSR*ARRSSSVGDCR Trigger: GCGACAGTCGCCAACGGAACTGCTTCTTCGCGCTCAGCGTGAAGATGGCTTCGGGCCCCACGAGCATCCGCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS CCA 72 bp | AAAAGGCAGTCGAAGGTCTCGCGGCTGCCGTCCAAGTaGAAGCGGCCGGCCTGGAAGTGCACGCGGATGCTC | + |
|
Preference number: 6 (lower is better) Translates to: KRQSKVSRLPSK*KRPAWKCTRML Trigger: GAGCATCCGCGTGCACTTCCAGGCCGGCCGCTTCCACTTGGACGGCAGCCGCGAGACCTTCGACTGCCTTTT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS CCA 72 bp | GCCATCTTCACGCTGAGCGCGAAGAAGCAGTTCCGTTaGCGACTGTCGCGCACCAAGAAGGTGCCCACGGGC | + |
|
Preference number: 6 (lower is better) Translates to: AIFTLSAKKQFR*RLSRTKKVPTG Trigger: GCCCGTGGGCACCTTCTTGGTGCGCGACAGTCGCCAACGGAACTGCTTCTTCGCGCTCAGCGTGAAGATGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||
| CDS CAA 72 bp | AGCCATCTTCACGCTGAGCGCGAAGAAGCAGTTCCGTaGGCGACTGTCGCGCACCAAGAAGGTGCCCACGGG | + |
|
Preference number: 6 (lower is better) Translates to: SHLHAEREEAVP*ATVAHQEGAHG Trigger: CCCGTGGGCACCTTCTTGGTGCGCGACAGTCGCCAACGGAACTGCTTCTTCGCGCTCAGCGTGAAGATGGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038099.6 ENSMUST00000229866.2 |
||