RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SNX9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002365

Ensembl transcript IDs: ENSMUST00000002436.11

Found 148 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCACAGGGAACCAACCTGGGCAGCAGTAGGGAGGCAGGGTCTTCTTaGCTGCTGTGCCCACCTACTGGGACCTCTGATGGGCTACCCACC +
Preference number: 1 (lower is better)
Translates to: AQGTNLGSSREAGSS*LLCPPTGTSDGLPT
Trigger: GGTGGGTAGCCCATCAGAGGTCCCAGTAGGTGGGCACAGCAGGCAAGAAGACCCTGCCTCCCTACTGCTGCCCAGGTTGGTTCCCTGTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR GCA 90 bp CCACAGCTCCTCTCCTCTCAGCCGCTGAGGGATGGAGAGCGTGCGTaGGAGGGTGGGAGCTTCCACCTGTGCTATGAGCTAGGAGGGAGT +
Preference number: 1 (lower is better)
Translates to: PQLLSSQPLRDGERA*EGGSFHLCYELGGS
Trigger: ACTCCCTCCTAGCTCATAGCACAGGTGGAAGCTCCCACCCTCGCACGCACGCTCTCCATCCCTCAGCGGCTGAGAGGAGAGGAGCTGTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR CCA 90 bp CAGGTCAGGAAAGTGGCAGCAGAGGGTCACATCATAAGGCAACTGTaGAAGGGGACCACTGTGTCTGCAGGGAGGAGATGGCGTGCGCTC +
Preference number: 1 (lower is better)
Translates to: QVRKVAAEGHIIRQL*KGTTVSAGRRWRAL
Trigger: GAGCGCACGCCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATGTGACCCTCTGCTGCCACTTTCCTGACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR CCA 90 bp CAGGGAGGAGATGGCGTGCGCTCTGTGCTCTCCAGTCATGAAGGCTaGGACACAGTCACAGACAGAGCCATTCTCTGCTTGTCACCAGCT +
Preference number: 1 (lower is better)
Translates to: QGGDGVRSVLSSHEG*DTVTDRAILCLSPA
Trigger: AGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCACAGAGCGCACGCCATCTCCTCCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR GCA 90 bp AGAGGGTCACATCATAAGGCAACTGTGGAAGGGGACCACTGTGTCTaGAGGGAGGAGATGGCGTGCGCTCTGTGCTCTCCAGTCATGAAG +
Preference number: 1 (lower is better)
Translates to: RGSHHKATVEGDHCV*REEMACALCSPVMK
Trigger: CTTCATGACTGGAGAGCACAGAGCGCACGCCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATGTGACCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR CCA 90 bp GGAGTGCAAAGAATGCTGAATTTACCTCAGCACAGGGAACCAACCTaGGCAGCAGTAGGGAGGCAGGGTCTTCTTGCCTGCTGTGCCCAC +
Preference number: 1 (lower is better)
Translates to: GVQRMLNLPQHREPT*AAVGRQGLLACCAH
Trigger: GTGGGCACAGCAGGCAAGAAGACCCTGCCTCCCTACTGCTGCCCAGGTTGGTTCCCTGTGCTGAGGTAAATTCAGCATTCTTTGCACTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR-3UTR GCA 90 bp CACATCATAAGGCAACTGTGGAAGGGGACCACTGTGTCTGCAGGGAGGAGATGGGATGGAGAGCGTGCGTaGGAGGGTGGGAGCTTCCAC +
Preference number: 2 (lower is better)
Translates to: HIIRQLWKGTTVSAGRRWDGERA*EGGSFH
Trigger: GTGGAAGCTCCCACCCTCGCACGCACGCTCTCCATC...CCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR-3UTR GCA 90 bp TCACAGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGCATGTCCTCCCGAGGGATGGAGAGCGTaGGTGCGAGGGTGGGAGCTT +
Preference number: 2 (lower is better)
Translates to: SQTEPFSACHQLATACPPEGWRA*VRGWEL
Trigger: AAGCTCCCACCCTCGCACGCACGCTCTCCATCCCTC...GGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR-3UTR CCA 90 bp TCACAGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGCATGTCCTCCCGCGTGCGTGCGAGGGTaGGAGCTTCCACCTGTGCTA +
Preference number: 2 (lower is better)
Translates to: SQTEPFSACHQLATACPPACVRG*ELPPVL
Trigger: TAGCACAGGTGGAAGCTCCCACCCTCGCACGCACGC...GGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR-3UTR CCA 90 bp TTGGCCCAGACTTCCCATCTCTATAATATAACGTCAGGTCAGGAAAGTGGCAGCCACAGGGAACCAACCTaGGCAGCAGTAGGGAGGCAG +
Preference number: 2 (lower is better)
Translates to: LAQTSHLYNITSGQESGSHREPT*AAVGRQ
Trigger: CTGCCTCCCTACTGCTGCCCAGGTTGGTTCCCTGTG...GCTGCCACTTTCCTGACCTGACGTTATATTATAGAGATGGGAAGTCTGGGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR CAA 90 bp CTGGGACACAGTCACAGACAGAGCCATTCTCTGCTTGTCACCAGCTaGCTACCGCATGTCCTCCCACTTACTCTAGTCCTTAACTTTCCC +
Preference number: 2 (lower is better)
Translates to: LGHSHRQSHSLLVTS*LPHVLPLTLVLNFP
Trigger: GGGAAAGTTAAGGACTAGAGTAAGTGGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGACTGTGTCCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR-3UTR TCA 90 bp TTGGCCCAGACTTCCCATCTCTATAATATAACGTCAGGTCAGGAAAGTGGCAGCATTGCCCCAGGTAAATaGAGCACTTCGGAGTTCTCT +
Preference number: 2 (lower is better)
Translates to: LAQTSHLYNITSGQESGSIAPGK*STSEFS
Trigger: AGAGAACTCCGAAGTGCTTCATTTACCTGGGGCAAT...GCTGCCACTTTCCTGACCTGACGTTATATTATAGAGATGGGAAGTCTGGGCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR-3UTR TCA 90 bp TTGGCCCAGACTTCCCATCTCTATAATATAACGTCAGGTCAGGAAAGTGGCAGCGAGTGCAAAGAATGCTaGATTTACCTCAGCACAGGG +
Preference number: 2 (lower is better)
Translates to: LAQTSHLYNITSGQESGSECKEC*IYLSTG
Trigger: CCCTGTGCTGAGGTAAATTCAGCATTCTTTGCACTC...GCTGCCACTTTCCTGACCTGACGTTATATTATAGAGATGGGAAGTCTGGGCCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR-3UTR TCA 90 bp TCATTTCTGTTGGCCCAGACTTCCCATCTCTATAATATAACGTCAGGTCAGGAAGGAGGGAACAGGCGCTaGACTCTGCTTCTGAGAGAA +
Preference number: 2 (lower is better)
Translates to: SFLLAQTSHLYNITSGQEGGNRR*TLLLRE
Trigger: TTCTCTCAGAAGCAGAGTTCAGCGCCTGTTCCCTCC...TTCCTGACCTGACGTTATATTATAGAGATGGGAAGTCTGGGCCAACAGAAATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR GCA 72 bp GGCAGCAGTAGGGAGGCAGGGTCTTCTTGCCTGCTGTaGCCACCTACTGGGACCTCTGATGGGCTACCCACC +
Preference number: 3 (lower is better)
Translates to: GSSREAGSSCLL*PPTGTSDGLPT
Trigger: GGTGGGTAGCCCATCAGAGGTCCCAGTAGGTGGGCACAGCAGGCAAGAAGACCCTGCCTCCCTACTGCTGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR GCA 72 bp ACCTGGGCAGCAGTAGGGAGGCAGGGTCTTCTTGCCTaGTGTGCCCACCTACTGGGACCTCTGATGGGCTAC +
Preference number: 3 (lower is better)
Translates to: TWAAVGRQGLLA*CAHLLGPLMGY
Trigger: GTAGCCCATCAGAGGTCCCAGTAGGTGGGCACAGCAGGCAAGAAGACCCTGCCTCCCTACTGCTGCCCAGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR GCA 72 bp ACCAACCTGGGCAGCAGTAGGGAGGCAGGGTCTTCTTaGCTGCTGTGCCCACCTACTGGGACCTCTGATGGG +
Preference number: 3 (lower is better)
Translates to: TNLGSSREAGSS*LLCPPTGTSDG
Trigger: CCCATCAGAGGTCCCAGTAGGTGGGCACAGCAGGCAAGAAGACCCTGCCTCCCTACTGCTGCCCAGGTTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR GCA 72 bp CTCTCCTCTCAGCCGCTGAGGGATGGAGAGCGTGCGTaGGAGGGTGGGAGCTTCCACCTGTGCTATGAGCTA +
Preference number: 3 (lower is better)
Translates to: LSSQPLRDGERA*EGGSFHLCYEL
Trigger: TAGCTCATAGCACAGGTGGAAGCTCCCACCCTCGCACGCACGCTCTCCATCCCTCAGCGGCTGAGAGGAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR GCA 72 bp GAAGGGGACCACTGTGTCTGCAGGGAGGAGATGGCGTaGGCTCTGTGCTCTCCAGTCATGAAGGCTGGGACA +
Preference number: 3 (lower is better)
Translates to: EGDHCVCREEMA*ALCSPVMKAGT
Trigger: TGTCCCAGCCTTCATGACTGGAGAGCACAGAGCGCACGCCATCTCCTCCCTGCAGACACAGTGGTCCCCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR GCA 72 bp CACTGTGTCTGCAGGGAGGAGATGGCGTGCGCTCTGTaGTCTCCAGTCATGAAGGCTGGGACACAGTCACAG +
Preference number: 3 (lower is better)
Translates to: HCVCREEMACAL*SPVMKAGTQSQ
Trigger: CTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCACAGAGCGCACGCCATCTCCTCCCTGCAGACACAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR-3UTR CAA 90 bp CACATCATAAGGCAACTGTGGAAGGGGACCACTGTGTCTGCAGGGAGGAGATGGGGAGGCAGGGTCTTCTaGCCTGCTGTGCCCACCTAC +
Preference number: 3 (lower is better)
Translates to: HIIRQLWKGTTVSAGRRWGGRVF*PAVPTY
Trigger: GTAGGTGGGCACAGCAGGCAAGAAGACCCTGCCTCC...CCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR TCA 72 bp GGGAGGAGATGGCGTGCGCTCTGTGCTCTCCAGTCATaGAGGCTGGGACACAGTCACAGACAGAGCCATTCT +
Preference number: 3 (lower is better)
Translates to: GRRWRALCALQS*RLGHSHRQSHS
Trigger: AGAATGGCTCTGTCTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCACAGAGCGCACGCCATCTCCTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR GCA 72 bp CATCATAAGGCAACTGTGGAAGGGGACCACTGTGTCTaGAGGGAGGAGATGGCGTGCGCTCTGTGCTCTCCA +
Preference number: 3 (lower is better)
Translates to: HHKATVEGDHCV*REEMACALCSP
Trigger: TGGAGAGCACAGAGCGCACGCCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR CCA 72 bp GATGGCGTGCGCTCTGTGCTCTCCAGTCATGAAGGCTaGGACACAGTCACAGACAGAGCCATTCTCTGCTTG +
Preference number: 3 (lower is better)
Translates to: DGVRSVLSSHEG*DTVTDRAILCL
Trigger: CAAGCAGAGAATGGCTCTGTCTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCACAGAGCGCACGCCATC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR CCA 72 bp AGAATGCTGAATTTACCTCAGCACAGGGAACCAACCTaGGCAGCAGTAGGGAGGCAGGGTCTTCTTGCCTGC +
Preference number: 3 (lower is better)
Translates to: RMLNLPQHREPT*AAVGRQGLLAC
Trigger: GCAGGCAAGAAGACCCTGCCTCCCTACTGCTGCCCAGGTTGGTTCCCTGTGCTGAGGTAAATTCAGCATTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR CCA 72 bp AAAGTGGCAGCAGAGGGTCACATCATAAGGCAACTGTaGAAGGGGACCACTGTGTCTGCAGGGAGGAGATGG +
Preference number: 3 (lower is better)
Translates to: KVAAEGHIIRQL*KGTTVSAGRRW
Trigger: CCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATGTGACCCTCTGCTGCCACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR-3UTR CAA 90 bp TCTGAGAGAATACTGACCAGCCTGCTGCTCCAAACCAGGCCACAGCTCCTCTCCCGACCAAAACAGGGTTaGTCAACTTCTTTCTTTTTG +
Preference number: 3 (lower is better)
Translates to: SERILTSLLLQTRPQLLSRPKQG*STSFFL
Trigger: CAAAAAGAAAGAAGTTGACAAACCCTGTTTTGGTCG...GGAGAGGAGCTGTGGCCTGGTTTGGAGCAGCAGGCTGGTCAGTATTCTCTCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR TCA 72 bp GAGGGGAGGGAATTGAATCGCATTGCCCCAGGTAAATaGAGCACTTCGGAGTTCTCTTGTGTTCCATTCTGG +
Preference number: 3 (lower is better)
Translates to: EGRELNRIAPGK*STSEFSCVPFW
Trigger: CCAGAATGGAACACAAGAGAACTCCGAAGTGCTTCATTTACCTGGGGCAATGCGATTCAATTCCCTCCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR CCA 72 bp ACAAGAAAGGCCATCCTGGGCAACAGCGCACGTAGGTaGCTAACGACCAAAACAGGGTTTGTCAACTTCTTT +
Preference number: 3 (lower is better)
Translates to: TRKAILGNSARR*LTTKTGFVNFF
Trigger: AAAGAAGTTGACAAACCCTGTTTTGGTCGTTAGCCACCTACGTGCGCTGTTGCCCAGGATGGCCTTTCTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp CTCCTCTCCTCTCAGCCGCTGAGGGATGGAGAGCGTGCGTGCGAGGGTGGGAGCAAGCGGCTGAGGGCCTaGCTCAGCTTTTCTGCGATT +
Preference number: 4 (lower is better)
Translates to: LLSSQPLRDGERACEGGSKRLRA*LSFSAI
Trigger: AATCGCAGAAAAGCTGAGGCAGGCCCTCAGCCGCTT...GCTCCCACCCTCGCACGCACGCTCTCCATCCCTCAGCGGCTGAGAGGAGAGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR TCA 90 bp CTCCTCTCCTCTCAGCCGCTGAGGGATGGAGAGCGTGCGTGCGAGGGTGGGAGCGCCTTCCCTATCTTCTaGTACTCCTTGGGTAAGGGC +
Preference number: 4 (lower is better)
Translates to: LLSSQPLRDGERACEGGSAFPIF*YSLGKG
Trigger: GCCCTTACCCAAGGAGTATCAGAAGATAGGGAAGGC...GCTCCCACCCTCGCACGCACGCTCTCCATCCCTCAGCGGCTGAGAGGAGAGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp CGCTCTGTGCTCTCCAGTCATGAAGGCTGGGACACAGTCACAGACAGAGCCATTGTGCAGCGCTTCCAGTaGTCCTGCCCCACCGTCAGC +
Preference number: 4 (lower is better)
Translates to: RSVLSSHEGWDTVTDRAIVQRFQ*SCPTVS
Trigger: GCTGACGGTGGGGCAGGAGCACTGGAAGCGCTGCAC...AATGGCTCTGTCTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCACAGAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CCA 90 bp CTGGGACACAGTCACAGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGGGTGCCGGCACATCCTaGTCATCCAGGCCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: LGHSHRQSHSLLVTSLLPGAGTS*SSRPGA
Trigger: GGCTCCAGGCCTGGATGACCAGGATGTGCCGGCACC...CGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGACTGTGTCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp TCTGAGAGAATACTGACCAGCCTGCTGCTCCAAACCAGGCCACAGCTCCTCTCCTGGGTAAGGGCCCTGTaGAGCGCTTCCAGTGCTCCT +
Preference number: 4 (lower is better)
Translates to: SERILTSLLLQTRPQLLSWVRAL*SASSAP
Trigger: AGGAGCACTGGAAGCGCTGCACAGGGCCCTTACCCA...GGAGAGGAGCTGTGGCCTGGTTTGGAGCAGCAGGCTGGTCAGTATTCTCTCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR TCA 90 bp CGCTCTGTGCTCTCCAGTCATGAAGGCTGGGACACAGTCACAGACAGAGCCATTCCTTGTGGGCACCAATaGTGTCCGGGAAGCAGCCGA +
Preference number: 4 (lower is better)
Translates to: RSVLSSHEGWDTVTDRAIPCGHQ*CPGSSR
Trigger: TCGGCTGCTTCCCGGACATCATTGGTGCCCACAAGG...AATGGCTCTGTCTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCACAGAGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CCA 90 bp TCACAGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGCATGTCCTCCCCTGGTCATCCAGGCCTaGAGCCGCTCCATCCGCATT +
Preference number: 4 (lower is better)
Translates to: SQTEPFSACHQLATACPPLVIQA*SRSIRI
Trigger: AATGCGGATGGAGCGGCTCCAGGCCTGGATGACCAG...GGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR TCA 90 bp CACATCATAAGGCAACTGTGGAAGGGGACCACTGTGTCTGCAGGGAGGAGATGGCATCCATGGCCTTGGTaGACTTCCCCACAGCGTCAC +
Preference number: 4 (lower is better)
Translates to: HIIRQLWKGTTVSAGRRWHPWPW*TSPQRH
Trigger: GTGACGCTGTGGGGAAGTTCACCAAGGCCATGGATG...CCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp CGCTCTGTGCTCTCCAGTCATGAAGGCTGGGACACAGTCACAGACAGAGCCATTTGTTTCCCCGCTGGATaGCCCCTGCTTCAGCTGGTT +
Preference number: 4 (lower is better)
Translates to: RSVLSSHEGWDTVTDRAICFPAG*PLLQLV
Trigger: AACCAGCTGAAGCAGGGGGCATCCAGCGGGGAAACA...AATGGCTCTGTCTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCACAGAGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp CTCCTCTCCTCTCAGCCGCTGAGGGATGGAGAGCGTGCGTGCGAGGGTGGGAGCCGGAAATTCAGGAACTaGTGGAAAACTTCACTTTCT +
Preference number: 4 (lower is better)
Translates to: LLSSQPLRDGERACEGGSRKFRN*WKTSLS
Trigger: AGAAAGTGAAGTTTTCCAGCAGTTCCTGAATTTCCG...GCTCCCACCCTCGCACGCACGCTCTCCATCCCTCAGCGGCTGAGAGGAGAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CCA 90 bp AGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGCATGTCCTCCCACTTTCCTTGGTAGGCCTGTaGGTGGCCAAAGCCCGTGTC +
Preference number: 4 (lower is better)
Translates to: RQSHSLLVTSLLPHVLPLSLVGL*VAKARV
Trigger: GACACGGGCTTTGGCCACCCACAGGCCTACCAAGGA...AAGTGGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CCA 90 bp TCTGAGAGAATACTGACCAGCCTGCTGCTCCAAACCAGGCCACAGCTCCTCTCCGTGGAGGTCCTTCTTTaGCTGCTCTGCCACAAGGCT +
Preference number: 4 (lower is better)
Translates to: SERILTSLLLQTRPQLLSVEVLL*LLCHKA
Trigger: AGCCTTGTGGCAGAGCAGCCAAAGAAGGACCTCCAC...GGAGAGGAGCTGTGGCCTGGTTTGGAGCAGCAGGCTGGTCAGTATTCTCTCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp AGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGCATGTCCTCCCACTTAGGTCCTTCTTTGGCTaGTCTGCCACAAGGCTGGCG +
Preference number: 4 (lower is better)
Translates to: RQSHSLLVTSLLPHVLPLRSFFG*SATRLA
Trigger: CGCCAGCCTTGTGGCAGAGCAGCCAAAGAAGGACCT...AAGTGGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp CGCTCTGTGCTCTCCAGTCATGAAGGCTGGGACACAGTCACAGACAGAGCCATTAAGCGACCTGTGACCTaGTTGTCTGGAAGAGAAGGG +
Preference number: 4 (lower is better)
Translates to: RSVLSSHEGWDTVTDRAIKRPVT*LSGREG
Trigger: CCCTTCTCTTCCAGACAAGCAGGTCACAGGTCGCTT...AATGGCTCTGTCTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCACAGAGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR TCA 90 bp CGCTCTGTGCTCTCCAGTCATGAAGGCTGGGACACAGTCACAGACAGAGCCATTAGCTTGGTCGGCTACTaGATTCCCACAAGAAAACGG +
Preference number: 4 (lower is better)
Translates to: RSVLSSHEGWDTVTDRAISLVGY*IPTRKR
Trigger: CCGTTTTCTTGTGGGAATTCAGTAGCCGACCAAGCT...AATGGCTCTGTCTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCACAGAGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR TCA 90 bp TTGGCCCAGACTTCCCATCTCTATAATATAACGTCAGGTCAGGAAAGTGGCAGCGCGCTGCTGTTCCTCTaGGCGCTAGTTCCGTCTGTC +
Preference number: 4 (lower is better)
Translates to: LAQTSHLYNITSGQESGSALLFL*ALVPSV
Trigger: GACAGACGGAACTAGCGCTCAGAGGAACAGCAGCGC...GCTGCCACTTTCCTGACCTGACGTTATATTATAGAGATGGGAAGTCTGGGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp CTGGGACACAGTCACAGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGGAGCGTAAGACATGGTaGCAACTCTCTTCACCATGG +
Preference number: 4 (lower is better)
Translates to: LGHSHRQSHSLLVTSLLPERKTW*QLSSPW
Trigger: CCATGGTGAAGAGAGTTGGCACCATGTCTTACGCTC...CGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGACTGTGTCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR TCA 90 bp CACATCATAAGGCAACTGTGGAAGGGGACCACTGTGTCTGCAGGGAGGAGATGGCCAGGTAGAGGCGGATaGCACTGTTGTAATCATAGA +
Preference number: 4 (lower is better)
Translates to: HIIRQLWKGTTVSAGRRWPGRGG*HCCNHR
Trigger: TCTATGATTACAACAGTGTCATCCGCCTCTACCTGG...CCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp CGCTCTGTGCTCTCCAGTCATGAAGGCTGGGACACAGTCACAGACAGAGCCATTTTGGCCAACAAGTACTaGTCCATGCCAGGTTTTGCA +
Preference number: 4 (lower is better)
Translates to: RSVLSSHEGWDTVTDRAILANKY*SMPGFA
Trigger: TGCAAAACCTGGCATGGAGCAGTACTTGTTGGCCAA...AATGGCTCTGTCTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCACAGAGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CCA 90 bp GGAGCACTTAACTGTAGCTATGCCAGTGAGGGTGTACAGACTCCCCCAAACAGAAAGGTGAGGAGGACTTaGGGTCGTCCCAGTCTTCAT +
Preference number: 4 (lower is better)
Translates to: GALNCSYASEGVQTPPNRKVRRT*GRPSLH
Trigger: ATGAAGACTGGGACGACCCCAAGTCCTCCTCACCTT...TCTGTTTGGGGGAGTCTGTACACCCTCACTGGCATAGCTACAGTTAAGTGCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp CACATCATAAGGCAACTGTGGAAGGGGACCACTGTGTCTGCAGGGAGGAGATGGACAAGTACTGCTCCATaGCAGGTTTTGCAAATCCAG +
Preference number: 4 (lower is better)
Translates to: HIIRQLWKGTTVSAGRRWTSTAP*QVLQIQ
Trigger: CTGGATTTGCAAAACCTGGCATGGAGCAGTACTTGT...CCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp CACATCATAAGGCAACTGTGGAAGGGGACCACTGTGTCTGCAGGGAGGAGATGGCTTTGTACTCATGGTTaGACTCCATCAGGAAGTGGA +
Preference number: 4 (lower is better)
Translates to: HIIRQLWKGTTVSAGRRWLCTHG*TPSGSG
Trigger: TCCACTTCCTGATGGAGTGCAACCATGAGTACAAAG...CCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CCA 90 bp CGCTCTGTGCTCTCCAGTCATGAAGGCTGGGACACAGTCACAGACAGAGCCATTAAGCCTTTGTACTCATaGTTGCACTCCATCAGGAAG +
Preference number: 4 (lower is better)
Translates to: RSVLSSHEGWDTVTDRAIKPLYS*LHSIRK
Trigger: CTTCCTGATGGAGTGCAACCATGAGTACAAAGGCTT...AATGGCTCTGTCTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCACAGAGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR CAA 72 bp AGTCACAGACAGAGCCATTCTCTGCTTGTCACCAGCTaGCTACCGCATGTCCTCCCACTTACTCTAGTCCTT +
Preference number: 4 (lower is better)
Translates to: SHRQSHSLLVTS*LPHVLPLTLVL
Trigger: AAGGACTAGAGTAAGTGGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp AGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGCATGTCCTCCCACTTGTAGGAACAAGCCCCTaGTCTCCTTTGTTGTTCTTT +
Preference number: 4 (lower is better)
Translates to: RQSHSLLVTSLLPHVLPLVGTSP*SPLLFF
Trigger: AAAGAACAACAAAGGAGAGCAGGGGCTTGTTCCTAC...AAGTGGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp GGAGCACTTAACTGTAGCTATGCCAGTGAGGGTGTACAGACTCCCCCAAACAGATTGGGTTTTGCTAGCTaGTTGGCCAACAAGTACTGC +
Preference number: 4 (lower is better)
Translates to: GALNCSYASEGVQTPPNRLGFAS*LANKYC
Trigger: GCAGTACTTGTTGGCCAAGCAGCTAGCAAAACCCAA...TCTGTTTGGGGGAGTCTGTACACCCTCACTGGCATAGCTACAGTTAAGTGCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp GGGAAAAATGACTTAGAAAACATTAACAAAGCCCTGATGTCAAGGACAGGAAGTCGCTTCCAGTGCTCCTaGCCCACCGTCAGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: GKNDLENINKALMSRTGSRFQCS*PTVSSS
Trigger: GGAGCTGCTGACGGTGGGGCAGGAGCACTGGAAGCG...ACTTCCTGTCCTTGACATCAGGGCTTTGTTAATGTTTTCTAAGTCATTTTTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp AGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGCATGTCCTCCCACTTCTCTTCACCATGGTCTaGTTGTCTTGGGGAGTAATT +
Preference number: 4 (lower is better)
Translates to: RQSHSLLVTSLLPHVLPLLFTMV*LSWGVI
Trigger: AATTACTCCCCAAGACAAGCAGACCATGGTGAAGAG...AAGTGGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CCA 90 bp TTGGCCCAGACTTCCCATCTCTATAATATAACGTCAGGTCAGGAAAGTGGCAGCCACTCCATCAGGAAGTaGAGGTCCTTCTTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: LAQTSHLYNITSGQESGSHSIRK*RSFFGC
Trigger: GCAGCCAAAGAAGGACCTCCACTTCCTGATGGAGTG...GCTGCCACTTTCCTGACCTGACGTTATATTATAGAGATGGGAAGTCTGGGCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CCA 90 bp AGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGCATGTCCTCCCACTTCCTGGTTATTGCTGTTaGCAGAAGATGAGTTGGTTT +
Preference number: 4 (lower is better)
Translates to: RQSHSLLVTSLLPHVLPLPGYCC*QKMSWF
Trigger: AAACCAACTCATCTTCTGCCAACAGCAATAACCAGG...AAGTGGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CCA 90 bp GGAGCACTTAACTGTAGCTATGCCAGTGAGGGTGTACAGACTCCCCCAAACAGACCTCTGGTTCCATGGTaGAAAATATCATCACTCCCA +
Preference number: 4 (lower is better)
Translates to: GALNCSYASEGVQTPPNRPLVPW*KISSLP
Trigger: TGGGAGTGATGATATTTTCCACCATGGAACCAGAGG...TCTGTTTGGGGGAGTCTGTACACCCTCACTGGCATAGCTACAGTTAAGTGCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CCA 90 bp CGCTCTGTGCTCTCCAGTCATGAAGGCTGGGACACAGTCACAGACAGAGCCATTAAGTGCTTATATCTGTaGTTTACAGATCGGTTAGTG +
Preference number: 4 (lower is better)
Translates to: RSVLSSHEGWDTVTDRAIKCLYL*FTDRLV
Trigger: CACTAACCGATCTGTAAACCACAGATATAAGCACTT...AATGGCTCTGTCTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCACAGAGCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CCA 90 bp CTGGGACACAGTCACAGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGAAATTCAGGAACTGCTaGAAAACTTCACTTTCTGAC +
Preference number: 4 (lower is better)
Translates to: LGHSHRQSHSLLVTSLLPKFRNC*KTSLSD
Trigger: GTCAGAAAGTGAAGTTTTCCAGCAGTTCCTGAATTT...CGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGACTGTGTCCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR TCA 90 bp TCATTTCTGTTGGCCCAGACTTCCCATCTCTATAATATAACGTCAGGTCAGGAACTTCAAAGCGACCTGTaGCCTGCTTGTCTGGAAGAG +
Preference number: 4 (lower is better)
Translates to: SFLLAQTSHLYNITSGQELQSDL*PACLEE
Trigger: CTCTTCCAGACAAGCAGGTCACAGGTCGCTTTGAAG...TTCCTGACCTGACGTTATATTATAGAGATGGGAAGTCTGGGCCAACAGAAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR TCA 90 bp GGGAAAAATGACTTAGAAAACATTAACAAAGCCCTGATGTCAAGGACAGGAAGTATCCTTGAAGTAAGGTaGGGAGGACTTGGGGTCGTC +
Preference number: 4 (lower is better)
Translates to: GKNDLENINKALMSRTGSILEVR*GGLGVV
Trigger: GACGACCCCAAGTCCTCCTCACCTTACTTCAAGGAT...ACTTCCTGTCCTTGACATCAGGGCTTTGTTAATGTTTTCTAAGTCATTTTTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp GGGAAAAATGACTTAGAAAACATTAACAAAGCCCTGATGTCAAGGACAGGAAGTCTGTCCAGGGGTCATTaGCACCACCAACCTGGTTAT +
Preference number: 4 (lower is better)
Translates to: GKNDLENINKALMSRTGSLSRGH*HHQPGY
Trigger: ATAACCAGGTTGGTGGTGGCAATGACCCCTGGACAG...ACTTCCTGTCCTTGACATCAGGGCTTTGTTAATGTTTTCTAAGTCATTTTTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR TCA 90 bp GGGAAAAATGACTTAGAAAACATTAACAAAGCCCTGATGTCAAGGACAGGAAGTGAAGATGAGTTGGTTTaGGCTGTGCTAGCTGTCAGG +
Preference number: 4 (lower is better)
Translates to: GKNDLENINKALMSRTGSEDELV*AVLAVR
Trigger: CCTGACAGCTAGCACAGCTCAAACCAACTCATCTTC...ACTTCCTGTCCTTGACATCAGGGCTTTGTTAATGTTTTCTAAGTCATTTTTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CCA 90 bp GGGAAAAATGACTTAGAAAACATTAACAAAGCCCTGATGTCAAGGACAGGAAGTGCAGAGCGTAAGACATaGTGCCAACTCTCTTCACCA +
Preference number: 4 (lower is better)
Translates to: GKNDLENINKALMSRTGSAERKT*CQLSSP
Trigger: TGGTGAAGAGAGTTGGCACCATGTCTTACGCTCTGC...ACTTCCTGTCCTTGACATCAGGGCTTTGTTAATGTTTTCTAAGTCATTTTTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CCA 90 bp GGGAAAAATGACTTAGAAAACATTAACAAAGCCCTGATGTCAAGGACAGGAAGTTGGCGATTTTCTCTTTaGGTTTTGCTAGCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: GKNDLENINKALMSRTGSWRFSL*VLLAAW
Trigger: CCAAGCAGCTAGCAAAACCCAAAGAGAAAATCGCCA...ACTTCCTGTCCTTGACATCAGGGCTTTGTTAATGTTTTCTAAGTCATTTTTCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp GGGAAAAATGACTTAGAAAACATTAACAAAGCCCTGATGTCAAGGACAGGAAGTCTGCCTCAGCTTTTCTaGGATTGTTTCATAGAACTG +
Preference number: 4 (lower is better)
Translates to: GKNDLENINKALMSRTGSLPQLF*DCFIEL
Trigger: CAGTTCTATGAAACAATCGCAGAAAAGCTGAGGCAG...ACTTCCTGTCCTTGACATCAGGGCTTTGTTAATGTTTTCTAAGTCATTTTTCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
3UTR CAA 72 bp GATGTCAAGGACAGGAAGTTGTCATGCTCACGCTCATaGGATTTTCTCAGCTACTTATTTTTGGTTTCATTC +
Preference number: 4 (lower is better)
Translates to: DVKDRKLSCSRS*DFLSYLFLVSF
Trigger: GAATGAAACCAAAAATAAGTAGCTGAGAAAATCCAATGAGCGTGAGCATGACAACTTCCTGTCCTTGACATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR GCA 90 bp GGGAAAAATGACTTAGAAAACATTAACAAAGCCCTGATGTCAAGGACAGGAAGTCTCCATGCCAGGTTTTaGAAATCCAGGAAATTTGTT +
Preference number: 4 (lower is better)
Translates to: GKNDLENINKALMSRTGSLHARF*KSRKFV
Trigger: AACAAATTTCCTGGATTTGCAAAACCTGGCATGGAG...ACTTCCTGTCCTTGACATCAGGGCTTTGTTAATGTTTTCTAAGTCATTTTTCCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 90 bp GGGTGGCCAAAGCCCGTGTCCCAGTTGTTGGCGCTGCTGTTCCTCTaGGCGCTAGTTCCGTCTGTCCTGGAGCCCCAGGCATCGGAGCTG +
Preference number: 5 (lower is better)
Translates to: GWPKPVSQLLALLFL*ALVPSVLEPQASEL
Trigger: CAGCTCCGATGCCTGGGGCTCCAGGACAGACGGAACTAGCGCTCAGAGGAACAGCAGCGCCAACAACTGGGACACGGGCTTTGGCCACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp CTCCTCTCCTCTCAGCCGCTGAGGGATGGAGAGCGTGCGTGCGAGGGTGGGAGCGGTTTTGCTAGCTGCTaGGCCAACAAGTACTGCTCC +
Preference number: 5 (lower is better)
Translates to: LLSSQPLRDGERACEGGSGFASC*ANKYCS
Trigger: GGAGCAGTACTTGTTGGCCAAGCAGCTAGCAAAACC...GCTCCCACCCTCGCACGCACGCTCTCCATCCCTCAGCGGCTGAGAGGAGAGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp CTCCTCTCCTCTCAGCCGCTGAGGGATGGAGAGCGTGCGTGCGAGGGTGGGAGCACCTGGTTATTGCTGTaGGCAGAAGATGAGTTGGTT +
Preference number: 5 (lower is better)
Translates to: LLSSQPLRDGERACEGGSTWLLL*AEDELV
Trigger: AACCAACTCATCTTCTGCCAACAGCAATAACCAGGT...GCTCCCACCCTCGCACGCACGCTCTCCATCCCTCAGCGGCTGAGAGGAGAGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp CTGGGACACAGTCACAGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGACCAGTTGCTGGTCCTaGGTAGGCCTGTGGGTGGCC +
Preference number: 5 (lower is better)
Translates to: LGHSHRQSHSLLVTSLLPTSCWS*VGLWVA
Trigger: GGCCACCCACAGGCCTACCAAGGACCAGCAACTGGT...CGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGACTGTGTCCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp CTCCTCTCCTCTCAGCCGCTGAGGGATGGAGAGCGTGCGTGCGAGGGTGGGAGCATGGCGATTTTCTCTTaGGGTTTTGCTAGCTGCTTG +
Preference number: 5 (lower is better)
Translates to: LLSSQPLRDGERACEGGSMAIFS*GFASCL
Trigger: CAAGCAGCTAGCAAAACCCAAAGAGAAAATCGCCAT...GCTCCCACCCTCGCACGCACGCTCTCCATCCCTCAGCGGCTGAGAGGAGAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 90 bp AAATTCAGGAACTGCTGGAAAACTTCACTTTCTGACACCACCGGGTaGCGGCACATCCTGGTCATCCAGGCCTGGAGCCGCTCCATCCGC +
Preference number: 5 (lower is better)
Translates to: KFRNCWKTSLSDTTG*RHILVIQAWSRSIR
Trigger: GCGGATGGAGCGGCTCCAGGCCTGGATGACCAGGATGTGCCGGCACCCGGTGGTGTCAGAAAGTGAAGTTTTCCAGCAGTTCCTGAATTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp TCACAGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGCATGTCCTCCCCCGTCATCCATGGCCTaGGTGAACTTCCCCACAGCG +
Preference number: 5 (lower is better)
Translates to: SQTEPFSACHQLATACPPPSSMA*VNFPTA
Trigger: CGCTGTGGGGAAGTTCACCAAGGCCATGGATGACGG...GGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp CTGGGACACAGTCACAGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGGCTGTCCAGGGGTCATaGCCACCACCAACCTGGTTA +
Preference number: 5 (lower is better)
Translates to: LGHSHRQSHSLLVTSLLPAVQGS*PPPTWL
Trigger: TAACCAGGTTGGTGGTGGCAATGACCCCTGGACAGC...CGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGACTGTGTCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp TCACAGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGCATGTCCTCCCTCCCAGTTCCCAGGTTaGGGAGCATTCCAGGCTGTC +
Preference number: 5 (lower is better)
Translates to: SQTEPFSACHQLATACPPSQFPG*GAFQAV
Trigger: GACAGCCTGGAATGCTCCCAAACCTGGGAACTGGGA...GGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 90 bp CCCAGTTCCCAGGTTTGGGAGCATTCCAGGCTGTCCAGGGGTCATTaGCACCACCAACCTGGTTATTGCTGTTGGCAGAAGATGAGTTGG +
Preference number: 5 (lower is better)
Translates to: PSSQVWEHSRLSRGH*HHQPGYCCWQKMSW
Trigger: CCAACTCATCTTCTGCCAACAGCAATAACCAGGTTGGTGGTGGCAATGACCCCTGGACAGCCTGGAATGCTCCCAAACCTGGGAACTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CCA 90 bp CTTTCTGACACCACCGGGTGCCGGCACATCCTGGTCATCCAGGCCTaGAGCCGCTCCATCCGCATTTTGATAAATTCCTCTTCAAAGCGA +
Preference number: 5 (lower is better)
Translates to: LSDTTGCRHILVIQA*SRSIRILINSSSKR
Trigger: TCGCTTTGAAGAGGAATTTATCAAAATGCGGATGGAGCGGCTCCAGGCCTGGATGACCAGGATGTGCCGGCACCCGGTGGTGTCAGAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 90 bp CTTCTCATCTCGGAAATTCAGGAACTGCTGGAAAACTTCACTTTCTaGCACCACCGGGTGCCGGCACATCCTGGTCATCCAGGCCTGGAG +
Preference number: 5 (lower is better)
Translates to: LLISEIQELLENFTF*HHRVPAHPGHPGLE
Trigger: CTCCAGGCCTGGATGACCAGGATGTGCCGGCACCCGGTGGTGTCAGAAAGTGAAGTTTTCCAGCAGTTCCTGAATTTCCGAGATGAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 90 bp ATGGTTGCACTCCATCAGGAAGTGGAGGTCCTTCTTTGGCTGCTCTaGCACAAGGCTGGCGATCTCCTCATACGTCTTCCCAGCTTCTGT +
Preference number: 5 (lower is better)
Translates to: MVALHQEVEVLLWLL*HKAGDLLIRLPSFC
Trigger: ACAGAAGCTGGGAAGACGTATGAGGAGATCGCCAGCCTTGTGGCAGAGCAGCCAAAGAAGGACCTCCACTTCCTGATGGAGTGCAACCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 90 bp TACTCATGGTTGCACTCCATCAGGAAGTGGAGGTCCTTCTTTGGCTaGTCTGCCACAAGGCTGGCGATCTCCTCATACGTCTTCCCAGCT +
Preference number: 5 (lower is better)
Translates to: YSWLHSIRKWRSFFG*SATRLAISSYVFPA
Trigger: AGCTGGGAAGACGTATGAGGAGATCGCCAGCCTTGTGGCAGAGCAGCCAAAGAAGGACCTCCACTTCCTGATGGAGTGCAACCATGAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp CACATCATAAGGCAACTGTGGAAGGGGACCACTGTGTCTGCAGGGAGGAGATGGGTAACGGTCAGCTCATaGTTTCCAGGCTCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: HIIRQLWKGTTVSAGRRWVTVSS*FPGSAA
Trigger: TGCTGCTGAGCCTGGAAACAATGAGCTGACCGTTAC...CCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 90 bp GCCCCACCGTCAGCAGCTCCTTCACGCCGTCATCCATGGCCTTGGTaGACTTCCCCACAGCGTCACACTTCTGTTCTATTTCTATCAAAT +
Preference number: 5 (lower is better)
Translates to: APPSAAPSRRHPWPW*TSPQRHTSVLFLSN
Trigger: ATTTGATAGAAATAGAACAGAAGTGTGACGCTGTGGGGAAGTTCACCAAGGCCATGGATGACGGCGTGAAGGAGCTGCTGACGGTGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CCA 90 bp TTTGTACTCATGGTTGCACTCCATCAGGAAGTGGAGGTCCTTCTTTaGCTGCTCTGCCACAAGGCTGGCGATCTCCTCATACGTCTTCCC +
Preference number: 5 (lower is better)
Translates to: FVLMVALHQEVEVLL*LLCHKAGDLLIRLP
Trigger: GGGAAGACGTATGAGGAGATCGCCAGCCTTGTGGCAGAGCAGCCAAAGAAGGACCTCCACTTCCTGATGGAGTGCAACCATGAGTACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp CTGGGACACAGTCACAGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGCCTTTGTACTCATGGTaGCACTCCATCAGGAAGTGG +
Preference number: 5 (lower is better)
Translates to: LGHSHRQSHSLLVTSLLPPLYSW*HSIRKW
Trigger: CCACTTCCTGATGGAGTGCAACCATGAGTACAAAGG...CGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCTGTGACTGTGTCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp AGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGCATGTCCTCCCACTTTTCATAGAACTGCACTaGCTGCTCCAGGTAGAGGCG +
Preference number: 5 (lower is better)
Translates to: RQSHSLLVTSLLPHVLPLFIELH*LLQVEA
Trigger: CGCCTCTACCTGGAGCAGCAAGTGCAGTTCTATGAA...AAGTGGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 90 bp CCACCACCAACCTGGTTATTGCTGTTGGCAGAAGATGAGTTGGTTTaGGCTGTGCTAGCTGTCAGGGAATCGAGGAAAGCTTGGTCGGCT +
Preference number: 5 (lower is better)
Translates to: PPPTWLLLLAEDELV*AVLAVRESRKAWSA
Trigger: AGCCGACCAAGCTTTCCTCGATTCCCTGACAGCTAGCACAGCTCAAACCAACTCATCTTCTGCCAACAGCAATAACCAGGTTGGTGGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 90 bp GGGGTCATTGCCACCACCAACCTGGTTATTGCTGTTGGCAGAAGATaGGTTGGTTTGAGCTGTGCTAGCTGTCAGGGAATCGAGGAAAGC +
Preference number: 5 (lower is better)
Translates to: GVIATTNLVIAVGRR*VGLSCASCQGIEES
Trigger: GCTTTCCTCGATTCCCTGACAGCTAGCACAGCTCAAACCAACTCATCTTCTGCCAACAGCAATAACCAGGTTGGTGGTGGCAATGACCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp CACATCATAAGGCAACTGTGGAAGGGGACCACTGTGTCTGCAGGGAGGAGATGGGCTCCATGCCAGGTTTaGCAAATCCAGGAAATTTGT +
Preference number: 5 (lower is better)
Translates to: HIIRQLWKGTTVSAGRRWAPCQV*QIQEIC
Trigger: ACAAATTTCCTGGATTTGCAAAACCTGGCATGGAGC...CCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp CACATCATAAGGCAACTGTGGAAGGGGACCACTGTGTCTGCAGGGAGGAGATGGCTTTCACTTTTTCTATaGCTCCCTTGTGGGCACCAA +
Preference number: 5 (lower is better)
Translates to: HIIRQLWKGTTVSAGRRWLSLFL*LPCGHQ
Trigger: TTGGTGCCCACAAGGGAGCAATAGAAAAAGTGAAAG...CCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 90 bp CTCTTTCCAGTCTTCCATTCCTTCTCATCTCGGAAATTCAGGAACTaGTGGAAAACTTCACTTTCTGACACCACCGGGTGCCGGCACATC +
Preference number: 5 (lower is better)
Translates to: LFPVFHSFSSRKFRN*WKTSLSDTTGCRHI
Trigger: GATGTGCCGGCACCCGGTGGTGTCAGAAAGTGAAGTTTTCCAGCAGTTCCTGAATTTCCGAGATGAGAAGGAATGGAAGACTGGAAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp AGACAGAGCCATTCTCTGCTTGTCACCAGCTTGCTACCGCATGTCCTCCCACTTTTTTCTCTTTGGGTTTaGCTAGCTGCTTGGCCAACA +
Preference number: 5 (lower is better)
Translates to: RQSHSLLVTSLLPHVLPLFSLWV*LAAWPT
Trigger: TGTTGGCCAAGCAGCTAGCAAAACCCAAAGAGAAAA...AAGTGGGAGGACATGCGGTAGCAAGCTGGTGACAAGCAGAGAATGGCTCTGTCT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp CGCTCTGTGCTCTCCAGTCATGAAGGCTGGGACACAGTCACAGACAGAGCCATTCGCTCCATCCGCATTTaGATAAATTCCTCTTCAAAG +
Preference number: 5 (lower is better)
Translates to: RSVLSSHEGWDTVTDRAIRSIRI*INSSSK
Trigger: CTTTGAAGAGGAATTTATCAAAATGCGGATGGAGCG...AATGGCTCTGTCTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCACAGAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CCA 90 bp GTTCTATTTCTATCAAATCCAAGTCAGGAGCCTCTGGTTCCATGGTaGAAAATATCATCACTCCCACCAGTTCGTCTTTCTCAGCCTTCC +
Preference number: 5 (lower is better)
Translates to: VLFLSNPSQEPLVPW*KISSLPPVRLSQPS
Trigger: GGAAGGCTGAGAAAGACGAACTGGTGGGAGTGATGATATTTTCCACCATGGAACCAGAGGCTCCTGACTTGGATTTGATAGAAATAGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp GGGAAAAATGACTTAGAAAACATTAACAAAGCCCTGATGTCAAGGACAGGAAGTCGACCTGTGACCTGCTaGTCTGGAAGAGAAGGGATC +
Preference number: 5 (lower is better)
Translates to: GKNDLENINKALMSRTGSRPVTC*SGREGI
Trigger: GATCCCTTCTCTTCCAGACAAGCAGGTCACAGGTCG...ACTTCCTGTCCTTGACATCAGGGCTTTGTTAATGTTTTCTAAGTCATTTTTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 90 bp CGATTGTTTCATAGAACTGCACTTGCTGCTCCAGGTAGAGGCGGATaGCACTGTTGTAATCATAGATCCGGTTACTGTGAAAGTGATTCA +
Preference number: 5 (lower is better)
Translates to: RLFHRTALAAPGRGG*HCCNHRSGYCESDS
Trigger: TGAATCACTTTCACAGTAACCGGATCTATGATTACAACAGTGTCATCCGCCTCTACCTGGAGCAGCAAGTGCAGTTCTATGAAACAATCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CCA 90 bp TCTGTTCTATTTCTATCAAATCCAAGTCAGGAGCCTCTGGTTCCATaGTGGAAAATATCATCACTCCCACCAGTTCGTCTTTCTCAGCCT +
Preference number: 5 (lower is better)
Translates to: SVLFLSNPSQEPLVP*WKISSLPPVRLSQP
Trigger: AGGCTGAGAAAGACGAACTGGTGGGAGTGATGATATTTTCCACCATGGAACCAGAGGCTCCTGACTTGGATTTGATAGAAATAGAACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 90 bp GCAGACCCAAACTTAACCAGGAGACGCTCATATAACCAATCAAAGTaGTTATATCTGTGGTTTACAGATCGGTTAGTGTTAGTGGGTGTT +
Preference number: 5 (lower is better)
Translates to: ADPNLTRRRSYNQSK*LYLWFTDRLVLVGV
Trigger: AACACCCACTAACACTAACCGATCTGTAAACCACAGATATAAGCACTTTGATTGGTTATATGAGCGTCTCCTGGTTAAGTTTGGGTCTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS-3UTR CAA 90 bp GGGAAAAATGACTTAGAAAACATTAACAAAGCCCTGATGTCAAGGACAGGAAGTGTGATTCATCTCAGCTaGCAGAGCGTAAGACATGGT +
Preference number: 5 (lower is better)
Translates to: GKNDLENINKALMSRTGSVIHLS*QSVRHG
Trigger: ACCATGTCTTACGCTCTGCAAGCTGAGATGAATCAC...ACTTCCTGTCCTTGACATCAGGGCTTTGTTAATGTTTTCTAAGTCATTTTTCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 90 bp TCTGTCCTGGAGCCCCAGGCATCGGAGCTGTCCCAGTTCCCAGGTTaGGGAGCATTCCAGGCTGTCCAGGGGTCATTGCCACCACCAACC +
Preference number: 6 (lower is better)
Translates to: SVLEPQASELSQFPG*GAFQAVQGSLPPPT
Trigger: GGTTGGTGGTGGCAATGACCCCTGGACAGCCTGGAATGCTCCCAAACCTGGGAACTGGGACAGCTCCGATGCCTGGGGCTCCAGGACAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 72 bp GAGCCCCAGGCATCGGAGCTGTCCCAGTTCCCAGGTTaGGGAGCATTCCAGGCTGTCCAGGGGTCATTGCCA +
Preference number: 6 (lower is better)
Translates to: EPQASELSQFPG*GAFQAVQGSLP
Trigger: TGGCAATGACCCCTGGACAGCCTGGAATGCTCCCAAACCTGGGAACTGGGACAGCTCCGATGCCTGGGGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 72 bp AACTGCTGGAAAACTTCACTTTCTGACACCACCGGGTaGCGGCACATCCTGGTCATCCAGGCCTGGAGCCGC +
Preference number: 6 (lower is better)
Translates to: NCWKTSLSDTTG*RHILVIQAWSR
Trigger: GCGGCTCCAGGCCTGGATGACCAGGATGTGCCGGCACCCGGTGGTGTCAGAAAGTGAAGTTTTCCAGCAGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CCA 72 bp GTCATCATCACCAGTTGCTGGTCCTTGGTAGGCCTGTaGGTGGCCAAAGCCCGTGTCCCAGTTGTTGGCGCT +
Preference number: 6 (lower is better)
Translates to: VIITSCWSLVGL*VAKARVPVVGA
Trigger: AGCGCCAACAACTGGGACACGGGCTTTGGCCACCCACAGGCCTACCAAGGACCAGCAACTGGTGATGATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CCA 72 bp TTCATGGAGGAGGCACCCGCACGACTGTTTCCCCGCTaGATGCCCCCTGCTTCAGCTGGTTCTGAATCCTTG +
Preference number: 6 (lower is better)
Translates to: FMEEAPARLFPR*MPPASAGSESL
Trigger: CAAGGATTCAGAACCAGCTGAAGCAGGGGGCATCCAGCGGGGAAACAGTCGTGCGGGTGCCTCCTCCATGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CCA 72 bp ACCACCGGGTGCCGGCACATCCTGGTCATCCAGGCCTaGAGCCGCTCCATCCGCATTTTGATAAATTCCTCT +
Preference number: 6 (lower is better)
Translates to: TTGCRHILVIQA*SRSIRILINSS
Trigger: AGAGGAATTTATCAAAATGCGGATGGAGCGGCTCCAGGCCTGGATGACCAGGATGTGCCGGCACCCGGTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 72 bp GCTGGATGCCCCCTGCTTCAGCTGGTTCTGAATCCTTaGAGTAAGGTGAGGAGGACTTGGGGTCGTCCCAGT +
Preference number: 6 (lower is better)
Translates to: AGCPLLQLVLNP*SKVRRTWGRPS
Trigger: ACTGGGACGACCCCAAGTCCTCCTCACCTTACTTCAAGGATTCAGAACCAGCTGAAGCAGGGGGCATCCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 72 bp CTCCATCAGGAAGTGGAGGTCCTTCTTTGGCTGCTCTaGCACAAGGCTGGCGATCTCCTCATACGTCTTCCC +
Preference number: 6 (lower is better)
Translates to: LHQEVEVLLWLL*HKAGDLLIRLP
Trigger: GGGAAGACGTATGAGGAGATCGCCAGCCTTGTGGCAGAGCAGCCAAAGAAGGACCTCCACTTCCTGATGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 72 bp TTCATCCCATTCGTCATCATCACCAGTTGCTGGTCCTaGGTAGGCCTGTGGGTGGCCAAAGCCCGTGTCCCA +
Preference number: 6 (lower is better)
Translates to: FIPFVIITSCWS*VGLWVAKARVP
Trigger: TGGGACACGGGCTTTGGCCACCCACAGGCCTACCAAGGACCAGCAACTGGTGATGATGACGAATGGGATGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 72 bp ACCGTCAGCAGCTCCTTCACGCCGTCATCCATGGCCTaGGTGAACTTCCCCACAGCGTCACACTTCTGTTCT +
Preference number: 6 (lower is better)
Translates to: TVSSSFTPSSMA*VNFPTASHFCS
Trigger: AGAACAGAAGTGTGACGCTGTGGGGAAGTTCACCAAGGCCATGGATGACGGCGTGAAGGAGCTGCTGACGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 90 bp TCCTGCCCCACCGTCAGCAGCTCCTTCACGCCGTCATCCATGGCCTaGGTGAACTTCCCCACAGCGTCACACTTCTGTTCTATTTCTATC +
Preference number: 6 (lower is better)
Translates to: SCPTVSSSFTPSSMA*VNFPTASHFCSISI
Trigger: GATAGAAATAGAACAGAAGTGTGACGCTGTGGGGAAGTTCACCAAGGCCATGGATGACGGCGTGAAGGAGCTGCTGACGGTGGGGCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 72 bp CAGGTTTGGGAGCATTCCAGGCTGTCCAGGGGTCATTaGCACCACCAACCTGGTTATTGCTGTTGGCAGAAG +
Preference number: 6 (lower is better)
Translates to: QVWEHSRLSRGH*HHQPGYCCWQK
Trigger: CTTCTGCCAACAGCAATAACCAGGTTGGTGGTGGCAATGACCCCTGGACAGCCTGGAATGCTCCCAAACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 72 bp TTGCACTCCATCAGGAAGTGGAGGTCCTTCTTTGGCTaGTCTGCCACAAGGCTGGCGATCTCCTCATACGTC +
Preference number: 6 (lower is better)
Translates to: LHSIRKWRSFFG*SATRLAISSYV
Trigger: GACGTATGAGGAGATCGCCAGCCTTGTGGCAGAGCAGCCAAAGAAGGACCTCCACTTCCTGATGGAGTGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 72 bp CCAGGTTTGGGAGCATTCCAGGCTGTCCAGGGGTCATaGCCACCACCAACCTGGTTATTGCTGTTGGCAGAA +
Preference number: 6 (lower is better)
Translates to: PGLGAFQAVQGS*PPPTWLLLLAE
Trigger: TTCTGCCAACAGCAATAACCAGGTTGGTGGTGGCAATGACCCCTGGACAGCCTGGAATGCTCCCAAACCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 72 bp CATGGTTGCACTCCATCAGGAAGTGGAGGTCCTTCTTaGGCTGCTCTGCCACAAGGCTGGCGATCTCCTCAT +
Preference number: 6 (lower is better)
Translates to: HGCTPSGSGGPS*AALPQGWRSPH
Trigger: ATGAGGAGATCGCCAGCCTTGTGGCAGAGCAGCCAAAGAAGGACCTCCACTTCCTGATGGAGTGCAACCATG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 90 bp TCCCAGTTCCCAGGTTTGGGAGCATTCCAGGCTGTCCAGGGGTCATaGCCACCACCAACCTGGTTATTGCTGTTGGCAGAAGATGAGTTG +
Preference number: 6 (lower is better)
Translates to: SQFPGLGAFQAVQGS*PPPTWLLLLAEDEL
Trigger: CAACTCATCTTCTGCCAACAGCAATAACCAGGTTGGTGGTGGCAATGACCCCTGGACAGCCTGGAATGCTCCCAAACCTGGGAACTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 90 bp CGGCACATCCTGGTCATCCAGGCCTGGAGCCGCTCCATCCGCATTTaGATAAATTCCTCTTCAAAGCGACCTGTGACCTGCTTGTCTGGA +
Preference number: 6 (lower is better)
Translates to: RHILVIQAWSRSIRI*INSSSKRPVTCLSG
Trigger: TCCAGACAAGCAGGTCACAGGTCGCTTTGAAGAGGAATTTATCAAAATGCGGATGGAGCGGCTCCAGGCCTGGATGACCAGGATGTGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CCA 72 bp ATGGTTGCACTCCATCAGGAAGTGGAGGTCCTTCTTTaGCTGCTCTGCCACAAGGCTGGCGATCTCCTCATA +
Preference number: 6 (lower is better)
Translates to: MVALHQEVEVLL*LLCHKAGDLLI
Trigger: TATGAGGAGATCGCCAGCCTTGTGGCAGAGCAGCCAAAGAAGGACCTCCACTTCCTGATGGAGTGCAACCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 72 bp CTGGTCATCCAGGCCTGGAGCCGCTCCATCCGCATTTaGATAAATTCCTCTTCAAAGCGACCTGTGACCTGC +
Preference number: 6 (lower is better)
Translates to: LVIQAWSRSIRI*INSSSKRPVTC
Trigger: GCAGGTCACAGGTCGCTTTGAAGAGGAATTTATCAAAATGCGGATGGAGCGGCTCCAGGCCTGGATGACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 72 bp GCACCAATGATGTCCGGGAAGCAGCCGAGAAAGCCTTaGTACTCATGGTTGCACTCCATCAGGAAGTGGAGG +
Preference number: 6 (lower is better)
Translates to: APMMSGKQPRKP*YSWLHSIRKWR
Trigger: CCTCCACTTCCTGATGGAGTGCAACCATGAGTACAAAGGCTTTCTCGGCTGCTTCCCGGACATCATTGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 90 bp CTTTGTACTCATGGTTGCACTCCATCAGGAAGTGGAGGTCCTTCTTaGGCTGCTCTGCCACAAGGCTGGCGATCTCCTCATACGTCTTCC +
Preference number: 6 (lower is better)
Translates to: LCTHGCTPSGSGGPS*AALPQGWRSPHTSS
Trigger: GGAAGACGTATGAGGAGATCGCCAGCCTTGTGGCAGAGCAGCCAAAGAAGGACCTCCACTTCCTGATGGAGTGCAACCATGAGTACAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 90 bp CCCTTGTGGGCACCAATGATGTCCGGGAAGCAGCCGAGAAAGCCTTaGTACTCATGGTTGCACTCCATCAGGAAGTGGAGGTCCTTCTTT +
Preference number: 6 (lower is better)
Translates to: PLWAPMMSGKQPRKP*YSWLHSIRKWRSFF
Trigger: AAAGAAGGACCTCCACTTCCTGATGGAGTGCAACCATGAGTACAAAGGCTTTCTCGGCTGCTTCCCGGACATCATTGGTGCCCACAAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 72 bp TCGGAAATTCAGGAACTGCTGGAAAACTTCACTTTCTaGCACCACCGGGTGCCGGCACATCCTGGTCATCCA +
Preference number: 6 (lower is better)
Translates to: SEIQELLENFTF*HHRVPAHPGHP
Trigger: TGGATGACCAGGATGTGCCGGCACCCGGTGGTGTCAGAAAGTGAAGTTTTCCAGCAGTTCCTGAATTTCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 72 bp TCAGCAGCTCCTTCACGCCGTCATCCATGGCCTTGGTaGACTTCCCCACAGCGTCACACTTCTGTTCTATTT +
Preference number: 6 (lower is better)
Translates to: SAAPSRRHPWPW*TSPQRHTSVLF
Trigger: AAATAGAACAGAAGTGTGACGCTGTGGGGAAGTTCACCAAGGCCATGGATGACGGCGTGAAGGAGCTGCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 72 bp CTGTCCAGGGGTCATTGCCACCACCAACCTGGTTATTaGTGTTGGCAGAAGATGAGTTGGTTTGAGCTGTGC +
Preference number: 6 (lower is better)
Translates to: LSRGHCHHQPGY*CWQKMSWFELC
Trigger: GCACAGCTCAAACCAACTCATCTTCTGCCAACAGCAATAACCAGGTTGGTGGTGGCAATGACCCCTGGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 72 bp GCCACCACCAACCTGGTTATTGCTGTTGGCAGAAGATaGGTTGGTTTGAGCTGTGCTAGCTGTCAGGGAATC +
Preference number: 6 (lower is better)
Translates to: ATTNLVIAVGRR*VGLSCASCQGI
Trigger: GATTCCCTGACAGCTAGCACAGCTCAAACCAACTCATCTTCTGCCAACAGCAATAACCAGGTTGGTGGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 72 bp AGTGATTCATCTCAGCTTGCAGAGCGTAAGACATGGTaGCAACTCTCTTCACCATGGTCTGCTTGTCTTGGG +
Preference number: 6 (lower is better)
Translates to: SDSSQLAERKTW*QLSSPWSACLG
Trigger: CCCAAGACAAGCAGACCATGGTGAAGAGAGTTGGCACCATGTCTTACGCTCTGCAAGCTGAGATGAATCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 90 bp GGGTTTGTAACTGTGATGATTTCTCCTTCAGTAACGGTCAGCTCATaGTTTCCAGGCTCAGCAGCAAAGTCGTACATGACCCGAGCCTTG +
Preference number: 6 (lower is better)
Translates to: GFVTVMISPSVTVSS*FPGSAAKSYMTRAL
Trigger: CAAGGCTCGGGTCATGTACGACTTTGCTGCTGAGCCTGGAAACAATGAGCTGACCGTTACTGAAGGAGAAATCATCACAGTTACAAACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 72 bp ACCTGGTTATTGCTGTTGGCAGAAGATGAGTTGGTTTaGGCTGTGCTAGCTGTCAGGGAATCGAGGAAAGCT +
Preference number: 6 (lower is better)
Translates to: TWLLLLAEDELV*AVLAVRESRKA
Trigger: AGCTTTCCTCGATTCCCTGACAGCTAGCACAGCTCAAACCAACTCATCTTCTGCCAACAGCAATAACCAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 72 bp CTTTCACTTTTTCTATTGCTCCCTTGTGGGCACCAATaGTGTCCGGGAAGCAGCCGAGAAAGCCTTTGTACT +
Preference number: 6 (lower is better)
Translates to: LSLFLLLPCGHQ*CPGSSRESLCT
Trigger: AGTACAAAGGCTTTCTCGGCTGCTTCCCGGACATCATTGGTGCCCACAAGGGAGCAATAGAAAAAGTGAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 72 bp GTCTTCCATTCCTTCTCATCTCGGAAATTCAGGAACTaGTGGAAAACTTCACTTTCTGACACCACCGGGTGC +
Preference number: 6 (lower is better)
Translates to: VFHSFSSRKFRN*WKTSLSDTTGC
Trigger: GCACCCGGTGGTGTCAGAAAGTGAAGTTTTCCAGCAGTTCCTGAATTTCCGAGATGAGAAGGAATGGAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CCA 72 bp AAATTCCTCTTCAAAGCGACCTGTGACCTGCTTGTCTaGAAGAGAAGGGATCGGAATGGCAGACCCAAACTT +
Preference number: 6 (lower is better)
Translates to: KFLFKATCDLLV*KRRDRNGRPKL
Trigger: AAGTTTGGGTCTGCCATTCCGATCCCTTCTCTTCCAGACAAGCAGGTCACAGGTCGCTTTGAAGAGGAATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 72 bp CCTCAGCTTTTCTGCGATTGTTTCATAGAACTGCACTaGCTGCTCCAGGTAGAGGCGGATGACACTGTTGTA +
Preference number: 6 (lower is better)
Translates to: PQLFCDCFIELH*LLQVEADDTVV
Trigger: TACAACAGTGTCATCCGCCTCTACCTGGAGCAGCAAGTGCAGTTCTATGAAACAATCGCAGAAAAGCTGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 72 bp AGCTGTCAGGGAATCGAGGAAAGCTTGGTCGGCTACTaGATTCCCACAAGAAAACGGATCTTTTCCATCGTT +
Preference number: 6 (lower is better)
Translates to: SCQGIEESLVGY*IPTRKRIFSIV
Trigger: AACGATGGAAAAGATCCGTTTTCTTGTGGGAATTCAGTAGCCGACCAAGCTTTCCTCGATTCCCTGACAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS TCA 72 bp CATAGAACTGCACTTGCTGCTCCAGGTAGAGGCGGATaGCACTGTTGTAATCATAGATCCGGTTACTGTGAA +
Preference number: 6 (lower is better)
Translates to: HRTALAAPGRGG*HCCNHRSGYCE
Trigger: TTCACAGTAACCGGATCTATGATTACAACAGTGTCATCCGCCTCTACCTGGAGCAGCAAGTGCAGTTCTATG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 72 bp ACGATGATGGCGATTTTCTCTTTGGGTTTTGCTAGCTaGTTGGCCAACAAGTACTGCTCCATGCCAGGTTTT +
Preference number: 6 (lower is better)
Translates to: TMMAIFSLGFAS*LANKYCSMPGF
Trigger: AAAACCTGGCATGGAGCAGTACTTGTTGGCCAAGCAGCTAGCAAAACCCAAAGAGAAAATCGCCATCATCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CCA 72 bp GCTGATACTCAATGTAGCTCTTCAGACCGTACATTTTaGAACCTTTCCGGGGATCAGCTACCACACAGTCAA +
Preference number: 6 (lower is better)
Translates to: ADTQCSSSDRTF*NLSGDQLPHSQ
Trigger: TTGACTGTGTGGTAGCTGATCCCCGGAAAGGTTCCAAAATGTACGGTCTGAAGAGCTACATTGAGTATCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CCA 72 bp GAAAGTGATTCATCTCAGCTTGCAGAGCGTAAGACATaGTGCCAACTCTCTTCACCATGGTCTGCTTGTCTT +
Preference number: 6 (lower is better)
Translates to: ESDSSQLAERKT*CQLSSPWSACL
Trigger: AAGACAAGCAGACCATGGTGAAGAGAGTTGGCACCATGTCTTACGCTCTGCAAGCTGAGATGAATCACTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 72 bp ACTGTGATGATTTCTCCTTCAGTAACGGTCAGCTCATaGTTTCCAGGCTCAGCAGCAAAGTCGTACATGACC +
Preference number: 6 (lower is better)
Translates to: TVMISPSVTVSS*FPGSAAKSYMT
Trigger: GGTCATGTACGACTTTGCTGCTGAGCCTGGAAACAATGAGCTGACCGTTACTGAAGGAGAAATCATCACAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 72 bp TCTTTGGGTTTTGCTAGCTGCTTGGCCAACAAGTACTaGTCCATGCCAGGTTTTGCAAATCCAGGAAATTTG +
Preference number: 6 (lower is better)
Translates to: SLGFASCLANKY*SMPGFANPGNL
Trigger: CAAATTTCCTGGATTTGCAAAACCTGGCATGGAGCAGTACTTGTTGGCCAAGCAGCTAGCAAAACCCAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 72 bp CATGGTGCCAACTCTCTTCACCATGGTCTGCTTGTCTaGGGGAGTAATTTTACTAGTTGCAACCAGCTTATC +
Preference number: 6 (lower is better)
Translates to: HGANSLHHGLLV*GSNFTSCNQLI
Trigger: GATAAGCTGGTTGCAACTAGTAAAATTACTCCCCAAGACAAGCAGACCATGGTGAAGAGAGTTGGCACCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CCA 72 bp ATGGTGCCAACTCTCTTCACCATGGTCTGCTTGTCTTaGGGAGTAATTTTACTAGTTGCAACCAGCTTATCA +
Preference number: 6 (lower is better)
Translates to: MVPTLFTMVCLS*GVILLVATSLS
Trigger: TGATAAGCTGGTTGCAACTAGTAAAATTACTCCCCAAGACAAGCAGACCATGGTGAAGAGAGTTGGCACCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CAA 90 bp AGCGTAAGACATGGTGCCAACTCTCTTCACCATGGTCTGCTTGTCTaGGGGAGTAATTTTACTAGTTGCAACCAGCTTATCACTTTCTTT +
Preference number: 6 (lower is better)
Translates to: SVRHGANSLHHGLLV*GSNFTSCNQLITFF
Trigger: AAAGAAAGTGATAAGCTGGTTGCAACTAGTAAAATTACTCCCCAAGACAAGCAGACCATGGTGAAGAGAGTTGGCACCATGTCTTACGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS CCA 72 bp AGACGCTCATATAACCAATCAAAGTGCTTATATCTGTaGTTTACAGATCGGTTAGTGTTAGTGGGTGTTAGC +
Preference number: 6 (lower is better)
Translates to: RRSYNQSKCLYL*FTDRLVLVGVS
Trigger: GCTAACACCCACTAACACTAACCGATCTGTAAACCACAGATATAAGCACTTTGATTGGTTATATGAGCGTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11
CDS GCA 72 bp AACTTAACCAGGAGACGCTCATATAACCAATCAAAGTaGTTATATCTGTGGTTTACAGATCGGTTAGTGTTA +
Preference number: 6 (lower is better)
Translates to: NLTRRRSYNQSK*LYLWFTDRLVL
Trigger: TAACACTAACCGATCTGTAAACCACAGATATAAGCACTTTGATTGGTTATATGAGCGTCTCCTGGTTAAGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002436.11