Pregenerated sensors for SNX7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028007Ensembl transcript IDs: ENSMUST00000029639.12, ENSMUST00000167877.2, ENSMUST00000169812.8, ENSMUST00000198499.5
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | TTATATCACAAATTCACGTTGATGACCTGGAATACCTaGGCTTTTAGTTGTTGGTTTTCCAGACAGTGCAAA | + |
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Preference number: 3 (lower is better) Translates to: LYHKFTLMTWNT*AFSCWFSRQCK Trigger: TTTGCACTGTCTGGAAAACCAACAACTAAAAGCTCAGGTATTCCAGGTCATCAACGTGAATTTGTGATATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 |
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| CDS-3UTR TCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAAAGGGAGCAAGGCCTCTaGCAGGCCAGCCATCCGCTT | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQREQGL*QASHPL Trigger: AAGCGGATGGCTGGCCTGTCAGAGGCCTTGCTCCCT...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS-3UTR TCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAAGGGAGGCATCCTTACTaGACACCTCCAGGTCGTCCT | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQGRHPY*TPPGRP Trigger: AGGACGACCTGGAGGTGTTCAGTAAGGATGCCTCCC...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 |
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| CDS-3UTR GCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAACTGTCTGTCCCATCCTaGTCAGCAAGCCAGGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQLSVPS*SASQGL Trigger: AAGGCCCTGGCTTGCTGAGCAGGATGGGACAGACAG...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS-3UTR GCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAAGTGGCCTTACAACACTaGTCAATGCAGCCGGCCATG | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQVALQH*SMQPAM Trigger: CATGGCCGGCTGCATTGAGCAGTGTTGTAAGGCCAC...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS-3UTR GCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAACCACCGCTCCCAGTCTaGTTTCAGGGCATTATTAGC | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQPPLPV*FQGIIS Trigger: GCTAATAATGCCCTGAAAGCAGACTGGGAGCGGTGG...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029639.12 ENSMUST00000198499.5 |
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| CDS-3UTR TCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAAAGTTATTCATCTCCATaGACTCCTCCGGCCGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQSYSSP*TPPAGS Trigger: AGAACCGGCCGGAGGAGTTCATGGAGATGAATAACT...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS-3UTR GCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAATACAACACTGCTCAATaGAGCCGGCCATGCCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQYNTAQ*SRPCLS Trigger: TGAAAGGCATGGCCGGCTGCATTGAGCAGTGTTGTA...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS-3UTR TCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAACATCATCGGGCTAAATaGGTTCATGTCCATCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQHHRAK*VHVHQG Trigger: TCCCTGATGGACATGAACTCATTTAGCCCGATGATG...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 |
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| CDS-3UTR TCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAAGGTCAGTCTGTGATGTaGGGAATGATTCCCATGTTG | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQGQSVM*GMIPML Trigger: CAACATGGGAATCATTCCTCACATCACAGACTGACC...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS-3UTR GCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAAGACATGGCTCTCAGGTaGATCAACTGTAATGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQDMALR*INCNEE Trigger: CTCTTCATTACAGTTGATGCACCTGAGAGCCATGTC...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS-3UTR GCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAAGTGCTTCTTCAAGTTTaGCCTTCAACCACAGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQVLLQV*PSTTGN Trigger: ATTTCCTGTGGTTGAAGGGCAAACTTGAAGAAGCAC...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS-3UTR CCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAATCAATTGTAGTGACATaGCTCTCAGGTGCATCAACT | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQSIVVT*LSGAST Trigger: AGTTGATGCACCTGAGAGCCATGTCACTACAATTGA...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS-3UTR CCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAAAATGTTAAAGTGGGATaGTCAGCGATCCTGTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQNVKVG*SAILFR Trigger: TCTGAACAGGATCGCTGACCATCCCACTTTAACATT...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS-3UTR CCA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAAGACGATAAACTTTTCTaGCAATGGGGGAATAATGAG | + |
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Preference number: 4 (lower is better) Translates to: FPDSAKIICHPLCKGHSQDDKLF*QWGNNE Trigger: CTCATTATTCCCCCATTGCCAGAAAAGTTTATCGTC...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS GCA 90 bp | ACAGGCCAGCCATCCGCTTCTCCGTGGCCTTACAACACTGCTCAATaGAGCCGGCCATGCCTTTCAACGTGTCGACCAGCTCTTCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: TGQPSASPWPYNTAQ*SRPCLSTCRPALPL Trigger: CAGAGGAAGAGCTGGTCGACACGTTGAAAGGCATGGCCGGCTGCATTGAGCAGTGTTGTAAGGCCACGGAGAAGCGGATGGCTGGCCTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000029639.12 ENSMUST00000167877.2 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS GCA 90 bp | CTCCTCGCATGGAAGATGCCACTGCTCGGACTGTCTGTCCCATCCTaGTCAGCAAGCCAGGGCCTTGCTTCTTATAGGAAGACAGTTCGG | + |
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Preference number: 5 (lower is better) Translates to: LLAWKMPLLGLSVPS*SASQGLASYRKTVR Trigger: CCGAACTGTCTTCCTATAAGAAGCAAGGCCCTGGCTTGCTGAGCAGGATGGGACAGACAGTCCGAGCAGTGGCATCTTCCATGCGAGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167877.2 |
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| CDS GCA 90 bp | CTCCTCGCATGGAAGATGCCACTGCTCGGACTGTCTGTCCCATCCTaGTCAGCAAGCCAGGGCCTTGCTTCTTATAGGAAGACAGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: LLAWKMPLLGLSVPS*SASQGLASYRKTVP Trigger: AGGAACTGTCTTCCTATAAGAAGCAAGGCCCTGGCTTGCTGAGCAGGATGGGACAGACAGTCCGAGCAGTGGCATCTTCCATGCGAGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS TCA 90 bp | GTTTCTCTTCGGAATCTTCTTCCGAGGGGAGGTCAGTCTGTGATGTaGGGAATGATTCCCATGTTGCAAGGCACTGCTCATAGTAGCGGA | + |
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Preference number: 5 (lower is better) Translates to: VSLRNLLPRGGQSVM*GMIPMLQGTAHSSG Trigger: TCCGCTACTATGAGCAGTGCCTTGCAACATGGGAATCATTCCTCACATCACAGACTGACCTCCCCTCGGAAGAAGATTCCGAAGAGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000167877.2 ENSMUST00000198499.5 |
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| CDS TCA 90 bp | GTTTCTCTTCGGAATCTTCTTCCGAGGGGAGGTCAGTCTGTGATGTaGGGAATGATTCCCATGTTGCAAGGCACAGGTCAATGTCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: VSLRNLLPRGGQSVM*GMIPMLQGTGQCQL Trigger: AAGCTGACATTGACCTGTGCCTTGCAACATGGGAATCATTCCTCACATCACAGACTGACCTCCCCTCGGAAGAAGATTCCGAAGAGAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169812.8 |
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| CDS-3UTR CAA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAACAGCAAGCCAGGGCCTaGCTTCTTATAGGAAGACAG | + |
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Preference number: 5 (lower is better) Translates to: FPDSAKIICHPLCKGHSQQQARA*LLIGRQ Trigger: CTGTCTTCCTATAAGAAGCAAGGCCCTGGCTTGCTG...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS-3UTR CAA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAACGTTCCACCATGCCTTaGACGATAAACTTTTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: FPDSAKIICHPLCKGHSQRSTMP*TINFSG Trigger: GCCAGAAAAGTTTATCGTCAAAGGCATGGTGGAACG...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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| CDS-3UTR CAA 90 bp | TTTCCAGACAGTGCAAAAATCATTTGTCATCCTCTTTGTAAAGGGCACAGCCAAGGAATGATTCCCATGTaGCAAGGCACAGGTCAATGT | + |
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Preference number: 5 (lower is better) Translates to: FPDSAKIICHPLCKGHSQGMIPM*QGTGQC Trigger: ACATTGACCTGTGCCTTGCAACATGGGAATCATTCC...TTGGCTGTGCCCTTTACAAAGAGGATGACAAATGATTTTTGCACTGTCTGGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169812.8 |
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| CDS GCA 72 bp | CCAGCACATCGGCCTGCAGCAGGCTGCAGGAACCGCTaGCACTCGGGATCGGGGCGCCGCCCCGCGGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: PAHRPAAGCRNR*HSGSGRRPAGS Trigger: AGAGCCCGCGGGGCGGCGCCCCGATCCCGAGTGGCAGCGGTTCCTGCAGCCTGCTGCAGGCCGATGTGCTGG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 |
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| CDS TCA 72 bp | CGGAATCTTCTTCCGAGGGGAGGTCAGTCTGTGATGTaGGGAATGATTCCCATGTTGCAAGGCACTGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: RNLLPRGGQSVM*GMIPMLQGTAH Trigger: ATGAGCAGTGCCTTGCAACATGGGAATCATTCCTCACATCACAGACTGACCTCCCCTCGGAAGAAGATTCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000167877.2 ENSMUST00000198499.5 |
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| CDS TCA 72 bp | CGGAATCTTCTTCCGAGGGGAGGTCAGTCTGTGATGTaGGGAATGATTCCCATGTTGCAAGGCACAGGTCAA | + |
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Preference number: 6 (lower is better) Translates to: RNLLPRGGQSVM*GMIPMLQGTGQ Trigger: TTGACCTGTGCCTTGCAACATGGGAATCATTCCTCACATCACAGACTGACCTCCCCTCGGAAGAAGATTCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169812.8 |
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| CDS GCA 72 bp | GCCTTGCTTCTTATAGGAAGACAGTTCCTCGGCCTGTaGAGTGAGGAAAACCTTGAAATCCTCATTAAATGT | + |
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Preference number: 6 (lower is better) Translates to: ALLLIGRQFLGL*SEENLEILIKC Trigger: ACATTTAATGAGGATTTCAAGGTTTTCCTCACTGCACAGGCCGAGGAACTGTCTTCCTATAAGAAGCAAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029639.12 ENSMUST00000169812.8 ENSMUST00000198499.5 |
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