Pregenerated sensors for SNX5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027423Ensembl transcript IDs: ENSMUST00000028909.5, ENSMUST00000110030.10
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTATACCATAACTGCAGAACTCCAGAGGCTGTAAAGCTGAGTCAGTaGAGTCCTGGGTTCAGAGCCAAATCCTGTTTCAAAGGAGTACTG | + |
|
Preference number: 1 (lower is better) Translates to: VYHNCRTPEAVKLSQ*SPGFRAKSCFKGVL Trigger: CAGTACTCCTTTGAAACAGGATTTGGCTCTGAACCCAGGACTCCACTGACTCAGCTTTACAGCCTCTGGAGTTCTGCAGTTATGGTATAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR TCA 90 bp | GGGCAGCTAATGAACCCTTTCCACCTGTGGAGCTGCCAGCATTCTTaGGGTCTAGTTTTCTACAAAAGCACTCCATATGGTAACATGGAT | + |
|
Preference number: 1 (lower is better) Translates to: GQLMNPFHLWSCQHS*GLVFYKSTPYGNMD Trigger: ATCCATGTTACCATATGGAGTGCTTTTGTAGAAAACTAGACCTCAAGAATGCTGGCAGCTCCACAGGTGGAAAGGGTTCATTAGCTGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR CCA 90 bp | GCCAAATCCTGTTTCAAAGGAGTACTGAGGGCTAAGCACTGTCAATaGTTTGCACAAAGCCCTGGCTCAATCCCTAAGATGTTAGTAAAG | + |
|
Preference number: 1 (lower is better) Translates to: AKSCFKGVLRAKHCQ*FAQSPGSIPKMLVK Trigger: CTTTACTAACATCTTAGGGATTGAGCCAGGGCTTTGTGCAAACCATTGACAGTGCTTAGCCCTCAGTACTCCTTTGAAACAGGATTTGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR CCA 90 bp | AAGCTGAGTCAGTGGAGTCCTGGGTTCAGAGCCAAATCCTGTTTCAAAGGAGTAGCTAAGCACTGTCAATaGTTTGCACAAAGCCCTGGC | + |
|
Preference number: 2 (lower is better) Translates to: KLSQWSPGFRAKSCFKGVAKHCQ*FAQSPG Trigger: GCCAGGGCTTTGTGCAAACCATTGACAGTGCTTAGC...TACTCCTTTGAAACAGGATTTGGCTCTGAACCCAGGACTCCACTGACTCAGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR CAA 90 bp | CAGAGCCAAGACTCAGTCTTCAAACCTGGGACTGAGCCAGATATGTaGGTATACCATAACTGCAGAACTCCAGAGGCTGTAAAGCTGAGT | + |
|
Preference number: 2 (lower is better) Translates to: QSQDSVFKPGTEPDM*VYHNCRTPEAVKLS Trigger: ACTCAGCTTTACAGCCTCTGGAGTTCTGCAGTTATGGTATACCAACATATCTGGCTCAGTCCCAGGTTTGAAGACTGAGTCTTGGCTCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR GCA 90 bp | AAAGCTGAGTCAGTGGAGTCCTGGGTTCAGAGCCAAATCCTGTTTCAAAGGAGTATAAAGAAGAGTGTCTaGCACCTGCCCACAAGCAGT | + |
|
Preference number: 2 (lower is better) Translates to: KAESVESWVQSQILFQRSIKKSV*HLPTSS Trigger: ACTGCTTGTGGGCAGGTGGCAGACACTCTTCTTTAT...ACTCCTTTGAAACAGGATTTGGCTCTGAACCCAGGACTCCACTGACTCAGCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR GCA 90 bp | TTGGTATACCATAACTGCAGAACTCCAGAGGCTGTAAAGCTGAGTCAGTGGAGTAAGCACAAACACACATaGCCCACCATCAGGGAGTGT | + |
|
Preference number: 2 (lower is better) Translates to: LVYHNCRTPEAVKLSQWSKHKHT*PTIREC Trigger: ACACTCCCTGATGGTGGGGCATGTGTGTTTGTGCTT...ACTCCACTGACTCAGCTTTACAGCCTCTGGAGTTCTGCAGTTATGGTATACCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR CCA 90 bp | AAAGCTGAGTCAGTGGAGTCCTGGGTTCAGAGCCAAATCCTGTTTCAAAGGAGTATGTTCAGACAGACATaGGCCAGGCTATTGCTTCTC | + |
|
Preference number: 2 (lower is better) Translates to: KAESVESWVQSQILFQRSMFRQT*ARLLLL Trigger: GAGAAGCAATAGCCTGGCCCATGTCTGTCTGAACAT...ACTCCTTTGAAACAGGATTTGGCTCTGAACCCAGGACTCCACTGACTCAGCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR TCA 90 bp | AAAGCTGAGTCAGTGGAGTCCTGGGTTCAGAGCCAAATCCTGTTTCAAAGGAGTTACCGTACAAGCATCTaGAGTGATCTTGACAAGAGG | + |
|
Preference number: 2 (lower is better) Translates to: KAESVESWVQSQILFQRSYRTSI*SDLDKR Trigger: CCTCTTGTCAAGATCACTTCAGATGCTTGTACGGTA...ACTCCTTTGAAACAGGATTTGGCTCTGAACCCAGGACTCCACTGACTCAGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR CCA 90 bp | AGAGGGAGCAAAATCTACCTAAATAAAGAAGAGTGTCTGCCACCTGCCCACAAGATGTTCAGACAGACATaGGCCAGGCTATTGCTTCTC | + |
|
Preference number: 2 (lower is better) Translates to: RGSKIYLNKEECLPPAHKMFRQT*ARLLLL Trigger: GAGAAGCAATAGCCTGGCCCATGTCTGTCTGAACAT...CTTGTGGGCAGGTGGCAGACACTCTTCTTTATTTAGGTAGATTTTGCTCCCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR TCA 90 bp | TTGGTATACCATAACTGCAGAACTCCAGAGGCTGTAAAGCTGAGTCAGTGGAGTTACCGTACAAGCATCTaGAGTGATCTTGACAAGAGG | + |
|
Preference number: 2 (lower is better) Translates to: LVYHNCRTPEAVKLSQWSYRTSI*SDLDKR Trigger: CCTCTTGTCAAGATCACTTCAGATGCTTGTACGGTA...ACTCCACTGACTCAGCTTTACAGCCTCTGGAGTTCTGCAGTTATGGTATACCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR GCA 90 bp | ATATACAGCAAACAGAGCCAAGACTCAGTCTTCAAACCTGGGACTGAGCCAGATCAAGCAGTCACTGTTTaGTGTAATTCACACCTGACA | + |
|
Preference number: 2 (lower is better) Translates to: IYSKQSQDSVFKPGTEPDQAVTV*CNSHLT Trigger: TGTCAGGTGTGAATTACAGCAAACAGTGACTGCTTG...ATCTGGCTCAGTCCCAGGTTTGAAGACTGAGTCTTGGCTCTGTTTGCTGTATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR CCA 90 bp | AAGCTGAGTCAGTGGAGTCCTGGGTTCAGAGCCAAATCCTGTTTCAAAGGAGTATCCCAGTTACAAAAATaGAGCTGTAAAGGATGTAAA | + |
|
Preference number: 2 (lower is better) Translates to: KLSQWSPGFRAKSCFKGVSQLQK*SCKGCK Trigger: TTTACATCCTTTACAGCTCCATTTTTGTAACTGGGA...TACTCCTTTGAAACAGGATTTGGCTCTGAACCCAGGACTCCACTGACTCAGCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR GCA 90 bp | TGTAAAGGATGTAAAAAGACATATGAGATCTTCTTGCTTGTTACCGTACAAGCAATAAAGAAGAGTGTCTaGCACCTGCCCACAAGCAGT | + |
|
Preference number: 2 (lower is better) Translates to: CKGCKKTYEIFLLVTVQAIKKSV*HLPTSS Trigger: ACTGCTTGTGGGCAGGTGGCAGACACTCTTCTTTAT...TGCTTGTACGGTAACAAGCAAGAAGATCTCATATGTCTTTTTACATCCTTTACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR GCA 72 bp | CCTGGGACTGAGCCAGATATGTTGGTATACCATAACTaGAGAACTCCAGAGGCTGTAAAGCTGAGTCAGTGG | + |
|
Preference number: 3 (lower is better) Translates to: PGTEPDMLVYHN*RTPEAVKLSQW Trigger: CCACTGACTCAGCTTTACAGCCTCTGGAGTTCTGCAGTTATGGTATACCAACATATCTGGCTCAGTCCCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR CAA 90 bp | CATAACTGCAGAACTCCAGAGGCTGTAAAGCTGAGTCAGTGGAGTCCTGGGTTCGAGCTGCCAGCATTCTaGAGGTCTAGTTTTCTACAA | + |
|
Preference number: 3 (lower is better) Translates to: HNCRTPEAVKLSQWSPGFELPAF*RSSFLQ Trigger: TTGTAGAAAACTAGACCTCAAGAATGCTGGCAGCTC...GAACCCAGGACTCCACTGACTCAGCTTTACAGCCTCTGGAGTTCTGCAGTTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR GCA 72 bp | CACAGGAAATGTTCAGACAGACATGGGCCAGGCTATTaGTTCTCATTTCCAGAAGGCACACATCTCCATACC | + |
|
Preference number: 3 (lower is better) Translates to: HRKCSDRHGPGY*FSFPEGTHLHT Trigger: GGTATGGAGATGTGTGCCTTCTGGAAATGAGAAGCAATAGCCTGGCCCATGTCTGTCTGAACATTTCCTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR CAA 90 bp | AAGATGTTAGTAAAGGTTACAAGAGGGCAGCTAATGAACCCTTTCCACCTGTGGACATGGGCCAGGCTATaGCTTCTCATTTCCAGAAGG | + |
|
Preference number: 3 (lower is better) Translates to: KMLVKVTRGQLMNPFHLWTWARL*LLISRR Trigger: CCTTCTGGAAATGAGAAGCAATAGCCTGGCCCATGT...CCACAGGTGGAAAGGGTTCATTAGCTGCCCTCTTGTAACCTTTACTAACATCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR CAA 90 bp | AAAGCTGAGTCAGTGGAGTCCTGGGTTCAGAGCCAAATCCTGTTTCAAAGGAGTGAGCTGCCAGCATTCTaGAGGTCTAGTTTTCTACAA | + |
|
Preference number: 3 (lower is better) Translates to: KAESVESWVQSQILFQRSELPAF*RSSFLQ Trigger: TTGTAGAAAACTAGACCTCAAGAATGCTGGCAGCTC...ACTCCTTTGAAACAGGATTTGGCTCTGAACCCAGGACTCCACTGACTCAGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR TCA 72 bp | GCCCACAAGCAGTCACTGTTTGCTGTAATTCACACCTaGCATGTCTGTAGGAGCAGACACAGGAAATGTTCA | + |
|
Preference number: 3 (lower is better) Translates to: AHKQSLFAVIHT*HVCRSRHRKCS Trigger: TGAACATTTCCTGTGTCTGCTCCTACAGACATGTCAGGTGTGAATTACAGCAAACAGTGACTGCTTGTGGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR CCA 72 bp | TGTTTCAAAGGAGTACTGAGGGCTAAGCACTGTCAATaGTTTGCACAAAGCCCTGGCTCAATCCCTAAGATG | + |
|
Preference number: 3 (lower is better) Translates to: CFKGVLRAKHCQ*FAQSPGSIPKM Trigger: CATCTTAGGGATTGAGCCAGGGCTTTGTGCAAACCATTGACAGTGCTTAGCCCTCAGTACTCCTTTGAAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR TCA 72 bp | ATGAACCCTTTCCACCTGTGGAGCTGCCAGCATTCTTaGGGTCTAGTTTTCTACAAAAGCACTCCATATGGT | + |
|
Preference number: 3 (lower is better) Translates to: MNPFHLWSCQHS*GLVFYKSTPYG Trigger: ACCATATGGAGTGCTTTTGTAGAAAACTAGACCTCAAGAATGCTGGCAGCTCCACAGGTGGAAAGGGTTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR-3UTR CAA 90 bp | TGTAAAGGATGTAAAAAGACATATGAGATCTTCTTGCTTGTTACCGTACAAGCAACATGGGCCAGGCTATaGCTTCTCATTTCCAGAAGG | + |
|
Preference number: 3 (lower is better) Translates to: CKGCKKTYEIFLLVTVQATWARL*LLISRR Trigger: CCTTCTGGAAATGAGAAGCAATAGCCTGGCCCATGT...TGCTTGTACGGTAACAAGCAAGAAGATCTCATATGTCTTTTTACATCCTTTACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR TCA 72 bp | AAGGCACACATCTCCATACCATTTCTTAGTAATTCCTaGCAGTCTATAGGAGAATCTGTTAGATTCTACCTA | + |
|
Preference number: 3 (lower is better) Translates to: KAHISIPFLSNS*QSIGESVRFYL Trigger: TAGGTAGAATCTAACAGATTCTCCTATAGACTGTCAGGAATTACTAAGAAATGGTATGGAGATGTGTGCCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR CCA 90 bp | AAGCTGAGTCAGTGGAGTCCTGGGTTCAGAGCCAAATCCTGTTTCAAAGGAGTAAGGGCCATCAAAGTCTaGCTTTGTAGGAGCAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: KLSQWSPGFRAKSCFKGVRAIKV*LCRSRR Trigger: CCTCCTGCTCCTACAAAGCCAGACTTTGATGGCCCT...TACTCCTTTGAAACAGGATTTGGCTCTGAACCCAGGACTCCACTGACTCAGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR GCA 90 bp | AGAGGGAGCAAAATCTACCTAAATAAAGAAGAGTGTCTGCCACCTGCCCACAAGACACAGATCTTAACTTaGTGCGGTCCTCCTCCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: RGSKIYLNKEECLPPAHKTQILT*CGPPPA Trigger: AGCAGGAGGAGGACCGCAGCAAGTTAAGATCTGTGT...CTTGTGGGCAGGTGGCAGACACTCTTCTTTATTTAGGTAGATTTTGCTCCCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR CCA 90 bp | AAGATGTTAGTAAAGGTTACAAGAGGGCAGCTAATGAACCCTTTCCACCTGTGGAGGGCCATCAAAGTCTaGCTTTGTAGGAGCAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: KMLVKVTRGQLMNPFHLWRAIKV*LCRSRR Trigger: CCTCCTGCTCCTACAAAGCCAGACTTTGATGGCCCT...CCACAGGTGGAAAGGGTTCATTAGCTGCCCTCTTGTAACCTTTACTAACATCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR GCA 90 bp | AAAATCTACCTAAATAAAGAAGAGTGTCTGCCACCTGCCCACAAGCAGTCACTGACACAGATCTTAACTTaGTGCGGTCCTCCTCCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: KIYLNKEECLPPAHKQSLTQILT*CGPPPA Trigger: AGCAGGAGGAGGACCGCAGCAAGTTAAGATCTGTGT...CAGTGACTGCTTGTGGGCAGGTGGCAGACACTCTTCTTTATTTAGGTAGATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR TCA 90 bp | AAGCTGAGTCAGTGGAGTCCTGGGTTCAGAGCCAAATCCTGTTTCAAAGGAGTAGAGTCTCTGCCAACTTaGCATCTTTGCTTTTTAACC | + |
|
Preference number: 4 (lower is better) Translates to: KLSQWSPGFRAKSCFKGVESLPT*HLCFLT Trigger: GGTTAAAAAGCAAAGATGTCAAGTTGGCAGAGACTC...TACTCCTTTGAAACAGGATTTGGCTCTGAACCCAGGACTCCACTGACTCAGCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR CCA 90 bp | CATAACTGCAGAACTCCAGAGGCTGTAAAGCTGAGTCAGTGGAGTCCTGGGTTCGTTCTTGCTTCATCTTaGCAAACTCTTCTTTTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: HNCRTPEAVKLSQWSPGFVLASS*QTLLLS Trigger: TGACAAAAGAAGAGTTTGCCAAGATGAAGCAAGAAC...GAACCCAGGACTCCACTGACTCAGCTTTACAGCCTCTGGAGTTCTGCAGTTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR CAA 72 bp | AATGAACCCTTTCCACCTGTGGAGCTGCCAGCATTCTaGAGGTCTAGTTTTCTACAAAAGCACTCCATATGG | + |
|
Preference number: 4 (lower is better) Translates to: NEPFPPVELPAF*RSSFLQKHSIW Trigger: CCATATGGAGTGCTTTTGTAGAAAACTAGACCTCAAGAATGCTGGCAGCTCCACAGGTGGAAAGGGTTCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR GCA 90 bp | AAAATCTACCTAAATAAAGAAGAGTGTCTGCCACCTGCCCACAAGCAGTCACTGCTGCTGATGAGTCTCTaGCAACTTGACATCTTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: KIYLNKEECLPPAHKQSLLLMSL*QLDIFA Trigger: AGCAAAGATGTCAAGTTGGCAGAGACTCATCAGCAG...CAGTGACTGCTTGTGGGCAGGTGGCAGACACTCTTCTTTATTTAGGTAGATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR GCA 90 bp | ATATACAGCAAACAGAGCCAAGACTCAGTCTTCAAACCTGGGACTGAGCCAGATTCTGGTCATTTTGTCTaGTTTAGCACAGGAATCCTT | + |
|
Preference number: 4 (lower is better) Translates to: IYSKQSQDSVFKPGTEPDSGHFV*FSTGIL Trigger: AAGGATTCCTGTGCTAAAGCAGACAAAATGACCAGA...ATCTGGCTCAGTCCCAGGTTTGAAGACTGAGTCTTGGCTCTGTTTGCTGTATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR GCA 90 bp | CCTAAGATGTTAGTAAAGGTTACAAGAGGGCAGCTAATGAACCCTTTCCACCTGTCTGGTCATTTTGTCTaGTTTAGCACAGGAATCCTT | + |
|
Preference number: 4 (lower is better) Translates to: PKMLVKVTRGQLMNPFHLSGHFV*FSTGIL Trigger: AAGGATTCCTGTGCTAAAGCAGACAAAATGACCAGA...CAGGTGGAAAGGGTTCATTAGCTGCCCTCTTGTAACCTTTACTAACATCTTAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR CCA 90 bp | TTGGTATACCATAACTGCAGAACTCCAGAGGCTGTAAAGCTGAGTCAGTGGAGTGTTCTTGCTTCATCTTaGCAAACTCTTCTTTTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: LVYHNCRTPEAVKLSQWSVLASS*QTLLLS Trigger: TGACAAAAGAAGAGTTTGCCAAGATGAAGCAAGAAC...ACTCCACTGACTCAGCTTTACAGCCTCTGGAGTTCTGCAGTTATGGTATACCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR TCA 90 bp | ATTTCCAGAAGGCACACATCTCCATACCATTTCTTAGTAATTCCTGACAGTCTATATTCCAAGAAAACATaGAAGTTGCGGTCTTTACTG | + |
|
Preference number: 4 (lower is better) Translates to: ISRRHTSPYHFLVIPDSLYSKKT*KLRSLL Trigger: CAGTAAAGACCGCAACTTTCATGTTTTCTTGGAATA...TAGACTGTCAGGAATTACTAAGAAATGGTATGGAGATGTGTGCCTTCTGGAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR TCA 90 bp | TGTAAAGGATGTAAAAAGACATATGAGATCTTCTTGCTTGTTACCGTACAAGCAGAGTCTCTGCCAACTTaGCATCTTTGCTTTTTAACC | + |
|
Preference number: 4 (lower is better) Translates to: CKGCKKTYEIFLLVTVQAESLPT*HLCFLT Trigger: GGTTAAAAAGCAAAGATGTCAAGTTGGCAGAGACTC...TGCTTGTACGGTAACAAGCAAGAAGATCTCATATGTCTTTTTACATCCTTTACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| 3UTR CAA 72 bp | TTCTTGCTTGTTACCGTACAAGCATCTGAAGTGATCTaGACAAGAGGGAGCAAAATCTACCTAAATAAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: FLLVTVQASEVI*TRGSKIYLNKE Trigger: TTCTTTATTTAGGTAGATTTTGCTCCCTCTTGTCAAGATCACTTCAGATGCTTGTACGGTAACAAGCAAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR TCA 90 bp | TGTAAAGGATGTAAAAAGACATATGAGATCTTCTTGCTTGTTACCGTACAAGCATATTCCAAGAAAACATaGAAGTTGCGGTCTTTACTG | + |
|
Preference number: 4 (lower is better) Translates to: CKGCKKTYEIFLLVTVQAYSKKT*KLRSLL Trigger: CAGTAAAGACCGCAACTTTCATGTTTTCTTGGAATA...TGCTTGTACGGTAACAAGCAAGAAGATCTCATATGTCTTTTTACATCCTTTACA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR CAA 90 bp | CATAACTGCAGAACTCCAGAGGCTGTAAAGCTGAGTCAGTGGAGTCCTGGGTTCCCTCCAAACATCTCCTaGGTATTCTTCCGTCTAACA | + |
|
Preference number: 5 (lower is better) Translates to: HNCRTPEAVKLSQWSPGFPPNIS*VFFRLT Trigger: TGTTAGACGGAAGAATACCAAGGAGATGTTTGGAGG...GAACCCAGGACTCCACTGACTCAGCTTTACAGCCTCTGGAGTTCTGCAGTTATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR CAA 90 bp | CATAACTGCAGAACTCCAGAGGCTGTAAAGCTGAGTCAGTGGAGTCCTGGGTTCAGTTCTTGCTTCATCTaGGCAAACTCTTCTTTTGTC | + |
|
Preference number: 5 (lower is better) Translates to: HNCRTPEAVKLSQWSPGFSSCFI*ANSSFV Trigger: GACAAAAGAAGAGTTTGCCAAGATGAAGCAAGAACT...GAACCCAGGACTCCACTGACTCAGCTTTACAGCCTCTGGAGTTCTGCAGTTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR CAA 90 bp | AAGCTGAGTCAGTGGAGTCCTGGGTTCAGAGCCAAATCCTGTTTCAAAGGAGTACCTCCAAACATCTCCTaGGTATTCTTCCGTCTAACA | + |
|
Preference number: 5 (lower is better) Translates to: KLSQWSPGFRAKSCFKGVPPNIS*VFFRLT Trigger: TGTTAGACGGAAGAATACCAAGGAGATGTTTGGAGG...TACTCCTTTGAAACAGGATTTGGCTCTGAACCCAGGACTCCACTGACTCAGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||
| CDS-3UTR CAA 90 bp | ATTTCCAGAAGGCACACATCTCCATACCATTTCTTAGTAATTCCTGACAGTCTAAGTTCTTGCTTCATCTaGGCAAACTCTTCTTTTGTC | + |
|
Preference number: 5 (lower is better) Translates to: ISRRHTSPYHFLVIPDSLSSCFI*ANSSFV Trigger: GACAAAAGAAGAGTTTGCCAAGATGAAGCAAGAACT...TAGACTGTCAGGAATTACTAAGAAATGGTATGGAGATGTGTGCCTTCTGGAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028909.5 ENSMUST00000110030.10 |
||