Pregenerated sensors for SNX4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022808Ensembl transcript IDs: ENSMUST00000023502.6, ENSMUST00000231389.2
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGTCTCACACATGGAGATGCTACACCTCGTACCCTGAAACGCCATaGGCACAGAGCCGAGCAGAAGAAATGGAGGCTGCTGCCGAAGTT | + |
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Preference number: 1 (lower is better) Translates to: VSHTWRCYTSYPETP*AQSRAEEMEAAAEV Trigger: AACTTCGGCAGCAGCCTCCATTTCTTCTGCTCGGCTCTGTGCTCATGGCGTTTCAGGGTACGAGGTGTAGCATCTCCATGTGTGAGACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR CCA 90 bp | GAGTGCACGGTTAGGAGGAGTCTGCAAGCTGGCAGAGAGTGTGCTTaGCTTCTGAACATGTGCCATGAAACACACACTAAAGCACAACAA | + |
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Preference number: 1 (lower is better) Translates to: ECTVRRSLQAGRECA*LLNMCHETHTKAQQ Trigger: TTGTTGTGCTTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGCACACTCTCTGCCAGCTTGCAGACTCCTCCTAACCGTGCACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR TCA 90 bp | CGGTTAGGAGGAGTCTGCAAGCTGGCAGAGAGTGTGCTTGGCTTCTaGACATGTGCCATGAAACACACACTAAAGCACAACAACATCATT | + |
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Preference number: 1 (lower is better) Translates to: RLGGVCKLAESVLGF*TCAMKHTLKHNNII Trigger: AATGATGTTGTTGTGCTTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGCACACTCTCTGCCAGCTTGCAGACTCCTCCTAACCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR TCA 90 bp | TCCTCTAGCACCTTTATCCTGGCTTCTCTTTGCTCTGGAGTTTCTTaGCCAAAGAGTTTGGTAGTCATTCCCTTCAACGAGAATGTTCTC | + |
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Preference number: 1 (lower is better) Translates to: SSSTFILASLCSGVS*PKSLVVIPFNENVL Trigger: GAGAACATTCTCGTTGAAGGGAATGACTACCAAACTCTTTGGTCAAGAAACTCCAGAGCAAAGAGAAGCCAGGATAAAGGTGCTAGAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| 3UTR-3UTR GCA 90 bp | AAACGCCATGAGCACAGAGCCGAGCAGAAGAAATGGAGGCTGCTGCCGAAGTTAGTGGGCACTGAGAGGTaGACATGGAGATTAACTCAC | + |
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Preference number: 2 (lower is better) Translates to: KRHEHRAEQKKWRLLPKLVGTER*TWRLTH Trigger: GTGAGTTAATCTCCATGTGCACCTCTCAGTGCCCAC...TAACTTCGGCAGCAGCCTCCATTTCTTCTGCTCGGCTCTGTGCTCATGGCGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR-3UTR CCA 90 bp | CTTCTTTACTTTTCTGTGGTGATAGGAATGGAACCCAGGGCCTGGCACACACGGGCCGAGCAGAAGAAATaGAGGCTGCTGCCGAAGTTA | + |
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Preference number: 2 (lower is better) Translates to: LLYFSVVIGMEPRAWHTRAEQKK*RLLPKL Trigger: TAACTTCGGCAGCAGCCTCCATTTCTTCTGCTCGGC...CCGTGTGTGCCAGGCCCTGGGTTCCATTCCTATCACCACAGAAAAGTAAAGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| 3UTR-3UTR TCA 90 bp | GCTGGCAGAGAGTGTGCTTGGCTTCTGAACATGTGCCATGAAACACACACTAAACTGGACAGTGGGCACTaGGAGGTGCACATGGAGATT | + |
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Preference number: 2 (lower is better) Translates to: AGRECAWLLNMCHETHTKLDSGH*EVHMEI Trigger: AATCTCCATGTGCACCTCTCAGTGCCCACTGTCCAG...TTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGCACACTCTCTGCCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR-3UTR GCA 90 bp | TTAGAAATAATGAGTGCACGGTTAGGAGGAGTCTGCAAGCTGGCAGAGAGTGTGCGGTTAGGAGGAGTCTaGAAGCTGGCAGAGAGTGTG | + |
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Preference number: 2 (lower is better) Translates to: LEIMSARLGGVCKLAESVRLGGV*KLAESV Trigger: CACACTCTCTGCCAGCTTGCAGACTCCTCCTAACCG...CACACTCTCTGCCAGCTTGCAGACTCCTCCTAACCGTGCACTCATTATTTCTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR-3UTR GCA 90 bp | GAGGTGCACATGGAGATTAACTCACATCCTGACGGAGGCACTGGATCAGGAGCCGCACACAGCCCGAAGTaGTTCTGCATAAAACAGATA | + |
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Preference number: 2 (lower is better) Translates to: EVHMEINSHPDGGTGSGAAHSPK*FCIKQI Trigger: TATCTGTTTTATGCAGAAGCACTTCGGGCTGTGTGC...GGCTCCTGATCCAGTGCCTCCGTCAGGATGTGAGTTAATCTCCATGTGCACCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| 3UTR-3UTR CCA 90 bp | TTAGAAATAATGAGTGCACGGTTAGGAGGAGTCTGCAAGCTGGCAGAGAGTGTGGGCAGAGAGTGTGCTTaGCTTCTGAACATGTGCCAT | + |
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Preference number: 2 (lower is better) Translates to: LEIMSARLGGVCKLAESVGRECA*LLNMCH Trigger: ATGGCACATGTTCAGAAGCCAAGCACACTCTCTGCC...CACACTCTCTGCCAGCTTGCAGACTCCTCCTAACCGTGCACTCATTATTTCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR-3UTR TCA 90 bp | AAACGCCATGAGCACAGAGCCGAGCAGAAGAAATGGAGGCTGCTGCCGAAGTTAACAACAAGTTTCTGCTaGGCTTTGTCAAACCAAACA | + |
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Preference number: 2 (lower is better) Translates to: KRHEHRAEQKKWRLLPKLTTSFC*ALSNQT Trigger: TGTTTGGTTTGACAAAGCTCAGCAGAAACTTGTTGT...TAACTTCGGCAGCAGCCTCCATTTCTTCTGCTCGGCTCTGTGCTCATGGCGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR-3UTR TCA 90 bp | GAAAACCTTAGACTTCACAACAAGTTTCTGCTGAGCTTTGTCAAACCAAACAGCGCATACACGTCCATGTaGTGCCCAGCACTCTGCAGC | + |
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Preference number: 2 (lower is better) Translates to: ENLRLHNKFLLSFVKPNSAYTSM*CPALCS Trigger: GCTGCAGAGTGCTGGGCATCACATGGACGTGTATGC...GCTGTTTGGTTTGACAAAGCTCAGCAGAAACTTGTTGTGAAGTCTAAGGTTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| 3UTR-3UTR CCA 90 bp | ATGTATCTATTCCACTGCAAATCTGAGAAGCTGAGACTTCGTTGTTGGCAGTATCGCACTGCTGCTTCTTaGCAGCCAGGTCTTGAGCAG | + |
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Preference number: 2 (lower is better) Translates to: MYLFHCKSEKLRLRCWQYRTAAS*QPGLEQ Trigger: CTGCTCAAGACCTGGCTGCCAAGAAGCAGCAGTGCG...ATACTGCCAACAACGAAGTCTCAGCTTCTCAGATTTGCAGTGGAATAGATACAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| 3UTR-3UTR CCA 90 bp | TTAGAAATAATGAGTGCACGGTTAGGAGGAGTCTGCAAGCTGGCAGAGAGTGTGCTAGCACCTTTATCCTaGCTTCTCTTTGCTCTGGAG | + |
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Preference number: 2 (lower is better) Translates to: LEIMSARLGGVCKLAESVLAPLS*LLFALE Trigger: CTCCAGAGCAAAGAGAAGCCAGGATAAAGGTGCTAG...CACACTCTCTGCCAGCTTGCAGACTCCTCCTAACCGTGCACTCATTATTTCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| 3UTR-3UTR TCA 90 bp | AACAAGTTTCTGCTGAGCTTTGTCAAACCAAACAGCTCAACTCTAAGGCAAGATCTGGACAGTGGGCACTaGGAGGTGCACATGGAGATT | + |
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Preference number: 2 (lower is better) Translates to: NKFLLSFVKPNSSTLRQDLDSGH*EVHMEI Trigger: AATCTCCATGTGCACCTCTCAGTGCCCACTGTCCAG...ATCTTGCCTTAGAGTTGAGCTGTTTGGTTTGACAAAGCTCAGCAGAAACTTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR-3UTR CCA 90 bp | GGCAGAGATAGGTTTTTGTGTCTAGCCTTATCTATAAAACTACTTCCAGGACTGGAGGAGTCTGCAAGCTaGCAGAGAGTGTGCTTGGCT | + |
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Preference number: 2 (lower is better) Translates to: GRDRFLCLALSIKLLPGLEESAS*QRVCLA Trigger: AGCCAAGCACACTCTCTGCCAGCTTGCAGACTCCTC...CAGTCCTGGAAGTAGTTTTATAGATAAGGCTAGACACAAAAACCTATCTCTGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| 3UTR-3UTR GCA 90 bp | GCTTGGCTTCTGAACATGTGCCATGAAACACACACTAAAGCACAACAACATCATGTGGGCACTGAGAGGTaGACATGGAGATTAACTCAC | + |
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Preference number: 2 (lower is better) Translates to: AWLLNMCHETHTKAQQHHVGTER*TWRLTH Trigger: GTGAGTTAATCTCCATGTGCACCTCTCAGTGCCCAC...ATGATGTTGTTGTGCTTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR-3UTR GCA 90 bp | CTTCTTTACTTTTCTGTGGTGATAGGAATGGAACCCAGGGCCTGGCACACACGGATGTATCTATTCCACTaGAAATCTGAGAAGCTGAGA | + |
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Preference number: 2 (lower is better) Translates to: LLYFSVVIGMEPRAWHTRMYLFH*KSEKLR Trigger: TCTCAGCTTCTCAGATTTGCAGTGGAATAGATACAT...CCGTGTGTGCCAGGCCCTGGGTTCCATTCCTATCACCACAGAAAAGTAAAGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| 3UTR-3UTR CCA 90 bp | CTTCTTTACTTTTCTGTGGTGATAGGAATGGAACCCAGGGCCTGGCACACACGGCTGAGACTTCGTTGTTaGCAGTATAAAATTTCTGAC | + |
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Preference number: 2 (lower is better) Translates to: LLYFSVVIGMEPRAWHTRLRLRC*QYKISD Trigger: GTCAGAAATTTTATACTGCCAACAACGAAGTCTCAG...CCGTGTGTGCCAGGCCCTGGGTTCCATTCCTATCACCACAGAAAAGTAAAGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| 3UTR-3UTR CCA 90 bp | TTCTACCAACCTTATCTTTTCGAAAACCATAGCAAAGCCAAGAGTGGCTCATGCGGCAGAGAGTGTGCTTaGCTTCTGAACATGTGCCAT | + |
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Preference number: 2 (lower is better) Translates to: FYQPYLFENHSKAKSGSCGRECA*LLNMCH Trigger: ATGGCACATGTTCAGAAGCCAAGCACACTCTCTGCC...GCATGAGCCACTCTTGGCTTTGCTATGGTTTTCGAAAAGATAAGGTTGGTAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| 3UTR-3UTR TCA 90 bp | TTCTACCAACCTTATCTTTTCGAAAACCATAGCAAAGCCAAGAGTGGCTCATGCGCAAATCTGAGAAGCTaGGACTTCGTTGTTGGCAGT | + |
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Preference number: 2 (lower is better) Translates to: FYQPYLFENHSKAKSGSCANLRS*DFVVGS Trigger: ACTGCCAACAACGAAGTCTCAGCTTCTCAGATTTGC...GCATGAGCCACTCTTGGCTTTGCTATGGTTTTCGAAAAGATAAGGTTGGTAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| 3UTR-3UTR GCA 90 bp | ATGTATCTATTCCACTGCAAATCTGAGAAGCTGAGACTTCGTTGTTGGCAGTATTACTGCATAAGCTCATaGTTCCTGCACACAGCCCGA | + |
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Preference number: 2 (lower is better) Translates to: MYLFHCKSEKLRLRCWQYYCISS*FLHTAR Trigger: TCGGGCTGTGTGCAGGAAGCATGAGCTTATGCAGTA...ATACTGCCAACAACGAAGTCTCAGCTTCTCAGATTTGCAGTGGAATAGATACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| 3UTR-3UTR GCA 90 bp | CACTTCATGGGGTTACATCTTGCTGAAGCATTCTTTAGCATTGGTCCAAACCTGAGCCCGAAGTGCTTCTaGATAAAACAGATACTCCTT | + |
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Preference number: 2 (lower is better) Translates to: HFMGLHLAEAFFSIGPNLSPKCF*IKQILL Trigger: AAGGAGTATCTGTTTTATGCAGAAGCACTTCGGGCT...CAGGTTTGGACCAATGCTAAAGAATGCTTCAGCAAGATGTAACCCCATGAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| 3UTR-3UTR CCA 90 bp | TTAGAAATAATGAGTGCACGGTTAGGAGGAGTCTGCAAGCTGGCAGAGAGTGTGCTGAGACTTCGTTGTTaGCAGTATAAAATTTCTGAC | + |
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Preference number: 2 (lower is better) Translates to: LEIMSARLGGVCKLAESVLRLRC*QYKISD Trigger: GTCAGAAATTTTATACTGCCAACAACGAAGTCTCAG...CACACTCTCTGCCAGCTTGCAGACTCCTCCTAACCGTGCACTCATTATTTCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR-3UTR GCA 90 bp | GCTTGGCTTCTGAACATGTGCCATGAAACACACACTAAAGCACAACAACATCATTCCCCTTCATTTATCTaGTCCTCTAGCACCTTTATC | + |
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Preference number: 2 (lower is better) Translates to: AWLLNMCHETHTKAQQHHSPSFI*SSSTFI Trigger: GATAAAGGTGCTAGAGGAGCAGATAAATGAAGGGGA...ATGATGTTGTTGTGCTTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| 3UTR-3UTR GCA 90 bp | GAAAACCTTAGACTTCACAACAAGTTTCTGCTGAGCTTTGTCAAACCAAACAGCTTTTTAGACTTCAGCTaGTGTTCCCCTTCATTTATC | + |
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Preference number: 2 (lower is better) Translates to: ENLRLHNKFLLSFVKPNSFLDFS*CSPSFI Trigger: GATAAATGAAGGGGAACAGCAGCTGAAGTCTAAAAA...GCTGTTTGGTTTGACAAAGCTCAGCAGAAACTTGTTGTGAAGTCTAAGGTTTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| 3UTR CCA 72 bp | CAGTCCCGGTGGCCAGCTCCTCGCACTGCTGCTTCTTaGCAGCCAGGTCTTGAGCAGCTGTCTCCAGGTCAT | + |
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Preference number: 3 (lower is better) Translates to: QSRWPAPRTAAS*QPGLEQLSPGH Trigger: ATGACCTGGAGACAGCTGCTCAAGACCTGGCTGCCAAGAAGCAGCAGTGCGAGGAGCTGGCCACCGGGACTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| 3UTR-3UTR CAA 90 bp | AGTCATTCCCTTCAACGAGAATGTTCTCACAGTCCCGGTGGCCAGCTCCTCGCACTTGGCAGCCAGGTCTaGAGCAGCTGTCTCCAGGTC | + |
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Preference number: 3 (lower is better) Translates to: SHSLQRECSHSPGGQLLALGSQV*SSCLQV Trigger: GACCTGGAGACAGCTGCTCAAGACCTGGCTGCCAAG...TGCGAGGAGCTGGCCACCGGGACTGTGAGAACATTCTCGTTGAAGGGAATGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| 3UTR TCA 72 bp | GAACCCAGGGCCTGGCACACACGGAGGAGCACACTATaGGCTACAGCCCGAGTCCTAGGCTGTGATTTTAAC | + |
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Preference number: 3 (lower is better) Translates to: EPRAWHTRRSTL*ATARVLGCDFN Trigger: GTTAAAATCACAGCCTAGGACTCGGGCTGTAGCTCATAGTGTGCTCCTCCGTGTGTGCCAGGCCCTGGGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| 3UTR CCA 72 bp | GCGTCTGGTCTGGGAAGAACTGCCCGTGAAGAGATCTaGACAGTGGGCACTGAGAGGTGCACATGGAGATTA | + |
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Preference number: 3 (lower is better) Translates to: ASGLGRTAREEI*TVGTERCTWRL Trigger: TAATCTCCATGTGCACCTCTCAGTGCCCACTGTCCAGATCTCTTCACGGGCAGTTCTTCCCAGACCAGACGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR TCA 72 bp | ACATGGAGATGCTACACCTCGTACCCTGAAACGCCATaGGCACAGAGCCGAGCAGAAGAAATGGAGGCTGCT | + |
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Preference number: 3 (lower is better) Translates to: TWRCYTSYPETP*AQSRAEEMEAA Trigger: AGCAGCCTCCATTTCTTCTGCTCGGCTCTGTGCTCATGGCGTTTCAGGGTACGAGGTGTAGCATCTCCATGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR TCA 72 bp | GCCCTCCCTCCTGAGTGCTGGGATCACCCGAGTGAATaGCGCTTGTCTTCTTTACTTTTCTGTGGTGATAGG | + |
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Preference number: 3 (lower is better) Translates to: ALPPECWDHPSE*RLSSLLFCGDR Trigger: CCTATCACCACAGAAAAGTAAAGAAGACAAGCGTCATTCACTCGGGTGATCCCAGCACTCAGGAGGGAGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| 3UTR TCA 72 bp | GGAGTCTGCAAGCTGGCAGAGAGTGTGCTTGGCTTCTaGACATGTGCCATGAAACACACACTAAAGCACAAC | + |
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Preference number: 3 (lower is better) Translates to: GVCKLAESVLGF*TCAMKHTLKHN Trigger: GTTGTGCTTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGCACACTCTCTGCCAGCTTGCAGACTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR CCA 72 bp | GTTAGGAGGAGTCTGCAAGCTGGCAGAGAGTGTGCTTaGCTTCTGAACATGTGCCATGAAACACACACTAAA | + |
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Preference number: 3 (lower is better) Translates to: VRRSLQAGRECA*LLNMCHETHTK Trigger: TTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGCACACTCTCTGCCAGCTTGCAGACTCCTCCTAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR-3UTR CAA 90 bp | CTTCTTTACTTTTCTGTGGTGATAGGAATGGAACCCAGGGCCTGGCACACACGGGGCAGAGATAGGTTTTaGTGTCTAGCCTTATCTATA | + |
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Preference number: 3 (lower is better) Translates to: LLYFSVVIGMEPRAWHTRGRDRF*CLALSI Trigger: TATAGATAAGGCTAGACACAAAAACCTATCTCTGCC...CCGTGTGTGCCAGGCCCTGGGTTCCATTCCTATCACCACAGAAAAGTAAAGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| 3UTR GCA 72 bp | CAAGCTGGCAGAGAGTGTGCTTGGCTTCTGAACATGTaGCATGAAACACACACTAAAGCACAACAACATCAT | + |
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Preference number: 3 (lower is better) Translates to: QAGRECAWLLNM*HETHTKAQQHH Trigger: ATGATGTTGTTGTGCTTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGCACACTCTCTGCCAGCTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR CCA 72 bp | CCCCTTCATTTATCTGCTCCTCTAGCACCTTTATCCTaGCTTCTCTTTGCTCTGGAGTTTCTTGACCAAAGA | + |
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Preference number: 3 (lower is better) Translates to: PLHLSAPLAPLS*LLFALEFLDQR Trigger: TCTTTGGTCAAGAAACTCCAGAGCAAAGAGAAGCCAGGATAAAGGTGCTAGAGGAGCAGATAAATGAAGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| 3UTR-3UTR CAA 90 bp | GCTGGCAGAGAGTGTGCTTGGCTTCTGAACATGTGCCATGAAACACACACTAAAACCAGTATCAAAATTTaGGTGAGACACAAACTGAAG | + |
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Preference number: 3 (lower is better) Translates to: AGRECAWLLNMCHETHTKTSIKI*VRHKLK Trigger: CTTCAGTTTGTGTCTCACCAAAATTTTGATACTGGT...TTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGCACACTCTCTGCCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR-3UTR CAA 90 bp | GAAAACCTTAGACTTCACAACAAGTTTCTGCTGAGCTTTGTCAAACCAAACAGCAGGCATTTTCTAGTGTaGCAGATGGTACAGGATCTA | + |
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Preference number: 3 (lower is better) Translates to: ENLRLHNKFLLSFVKPNSRHFLV*QMVQDL Trigger: TAGATCCTGTACCATCTGCAACACTAGAAAATGCCT...GCTGTTTGGTTTGACAAAGCTCAGCAGAAACTTGTTGTGAAGTCTAAGGTTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR-3UTR CAA 90 bp | GCTTGGCTTCTGAACATGTGCCATGAAACACACACTAAAGCACAACAACATCATACCAGTATCAAAATTTaGGTGAGACACAAACTGAAG | + |
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Preference number: 3 (lower is better) Translates to: AWLLNMCHETHTKAQQHHTSIKI*VRHKLK Trigger: CTTCAGTTTGTGTCTCACCAAAATTTTGATACTGGT...ATGATGTTGTTGTGCTTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR-3UTR CAA 90 bp | GGCAGAGATAGGTTTTTGTGTCTAGCCTTATCTATAAAACTACTTCCAGGACTGATTAAATTAACTTTTTaGGAATCAGCACCAGTCCCC | + |
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Preference number: 3 (lower is better) Translates to: GRDRFLCLALSIKLLPGLIKLTF*ESAPVP Trigger: GGGGACTGGTGCTGATTCCAAAAAAGTTAATTTAAT...CAGTCCTGGAAGTAGTTTTATAGATAAGGCTAGACACAAAAACCTATCTCTGCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| 3UTR-3UTR CAA 90 bp | CTGAGCTTTGTCAAACCAAACAGCTCAACTCTAAGGCAAGATAAAATAACTGTATCATGGGGTTACATCTaGCTGAAGCATTCTTTAGCA | + |
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Preference number: 3 (lower is better) Translates to: LSFVKPNSSTLRQDKITVSWGYI*LKHSLA Trigger: TGCTAAAGAATGCTTCAGCAAGATGTAACCCCATGA...TACAGTTATTTTATCTTGCCTTAGAGTTGAGCTGTTTGGTTTGACAAAGCTCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| 3UTR-3UTR CAA 90 bp | CTGAGCTTTGTCAAACCAAACAGCTCAACTCTAAGGCAAGATAAAATAACTGTAATTAAATTAACTTTTTaGGAATCAGCACCAGTCCCC | + |
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Preference number: 3 (lower is better) Translates to: LSFVKPNSSTLRQDKITVIKLTF*ESAPVP Trigger: GGGGACTGGTGCTGATTCCAAAAAAGTTAATTTAAT...TACAGTTATTTTATCTTGCCTTAGAGTTGAGCTGTTTGGTTTGACAAAGCTCAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| 3UTR CCA 72 bp | TTCCACTGCAAATCTGAGAAGCTGAGACTTCGTTGTTaGCAGTATAAAATTTCTGACCAGTATCAAAATTTT | + |
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Preference number: 3 (lower is better) Translates to: FHCKSEKLRLRC*QYKISDQYQNF Trigger: AAAATTTTGATACTGGTCAGAAATTTTATACTGCCAACAACGAAGTCTCAGCTTCTCAGATTTGCAGTGGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS-3UTR TCA 90 bp | AAACGCCATGAGCACAGAGCCGAGCAGAAGAAATGGAGGCTGCTGCCGAAGTTATCCACAGCGAGTCTGTaGGCACACTCTGACCATCGG | + |
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Preference number: 4 (lower is better) Translates to: KRHEHRAEQKKWRLLPKLSTASL*AHSDHR Trigger: CCGATGGTCAGAGTGTGCTCACAGACTCGCTGTGGA...TAACTTCGGCAGCAGCCTCCATTTCTTCTGCTCGGCTCTGTGCTCATGGCGTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS-3UTR CCA 90 bp | CTTCTTTACTTTTCTGTGGTGATAGGAATGGAACCCAGGGCCTGGCACACACGGCGCACTGCTGCTTCTTaGCAGCCAGGTCTTGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LLYFSVVIGMEPRAWHTRRTAAS*QPGLEQ Trigger: CTGCTCAAGACCTGGCTGCCAAGAAGCAGCAGTGCG...CCGTGTGTGCCAGGCCCTGGGTTCCATTCCTATCACCACAGAAAAGTAAAGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR GCA 90 bp | GAGAGGTGCACATGGAGATTAACTCACATCCTGACGGAGGCACTGGATCAGGAGTACTGCATAAGCTCATaGTTCCTGCACACAGCCCGA | + |
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Preference number: 4 (lower is better) Translates to: ERCTWRLTHILTEALDQEYCISS*FLHTAR Trigger: TCGGGCTGTGTGCAGGAAGCATGAGCTTATGCAGTA...CTCCTGATCCAGTGCCTCCGTCAGGATGTGAGTTAATCTCCATGTGCACCTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR GCA 90 bp | TTAGAAATAATGAGTGCACGGTTAGGAGGAGTCTGCAAGCTGGCAGAGAGTGTGATGCCACACGAACTCTaGCCGCTTTTCTGGGAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LEIMSARLGGVCKLAESVMPHEL*PLFWER Trigger: CCTCTCCCAGAAAAGCGGGCAGAGTTCGTGTGGCAT...CACACTCTCTGCCAGCTTGCAGACTCCTCCTAACCGTGCACTCATTATTTCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS-3UTR CCA 90 bp | AAACGCCATGAGCACAGAGCCGAGCAGAAGAAATGGAGGCTGCTGCCGAAGTTACTTTTCTGGGAGAGGTaGCACAACAACATGTGGGTA | + |
|
Preference number: 4 (lower is better) Translates to: KRHEHRAEQKKWRLLPKLLFWER*HNNMWV Trigger: TACCCACATGTTGTTGTGCCACCTCTCCCAGAAAAG...TAACTTCGGCAGCAGCCTCCATTTCTTCTGCTCGGCTCTGTGCTCATGGCGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS-3UTR CCA 90 bp | GCTGGCAGAGAGTGTGCTTGGCTTCTGAACATGTGCCATGAAACACACACTAAACTCTGCCCGCTTTTCTaGGAGAGGTGGCACAACAAC | + |
|
Preference number: 4 (lower is better) Translates to: AGRECAWLLNMCHETHTKLCPLF*ERWHNN Trigger: GTTGTTGTGCCACCTCTCCCAGAAAAGCGGGCAGAG...TTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGCACACTCTCTGCCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS-3UTR TCA 90 bp | AAACGCCATGAGCACAGAGCCGAGCAGAAGAAATGGAGGCTGCTGCCGAAGTTAGCATTGGTCCAAACCTaGATTCCCTTTTTGCACATG | + |
|
Preference number: 4 (lower is better) Translates to: KRHEHRAEQKKWRLLPKLALVQT*IPFLHM Trigger: CATGTGCAAAAAGGGAATTCAGGTTTGGACCAATGC...TAACTTCGGCAGCAGCCTCCATTTCTTCTGCTCGGCTCTGTGCTCATGGCGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR GCA 90 bp | TTAGAAATAATGAGTGCACGGTTAGGAGGAGTCTGCAAGCTGGCAGAGAGTGTGTCAGCAGAGAGTTTATaGCACACGAACTCTGCCCGC | + |
|
Preference number: 4 (lower is better) Translates to: LEIMSARLGGVCKLAESVSAESL*HTNSAR Trigger: GCGGGCAGAGTTCGTGTGGCATAAACTCTCTGCTGA...CACACTCTCTGCCAGCTTGCAGACTCCTCCTAACCGTGCACTCATTATTTCTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS-3UTR TCA 90 bp | TCTGCTCCTCTAGCACCTTTATCCTGGCTTCTCTTTGCTCTGGAGTTTCTTGACGATCACTTACAGCTCTaGCTCGAAGGAGATGCGAGA | + |
|
Preference number: 4 (lower is better) Translates to: SAPLAPLSWLLFALEFLDDHLQL*LEGDAR Trigger: TCTCGCATCTCCTTCGAGTCAGAGCTGTAAGTGATC...GTCAAGAAACTCCAGAGCAAAGAGAAGCCAGGATAAAGGTGCTAGAGGAGCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| CDS-3UTR CCA 90 bp | GCTTGTCTTCTTTACTTTTCTGTGGTGATAGGAATGGAACCCAGGGCCTGGCACCTTTTCTGGGAGAGGTaGCACAACAACATGTGGGTA | + |
|
Preference number: 4 (lower is better) Translates to: ACLLYFSVVIGMEPRAWHLFWER*HNNMWV Trigger: TACCCACATGTTGTTGTGCCACCTCTCCCAGAAAAG...GTGCCAGGCCCTGGGTTCCATTCCTATCACCACAGAAAAGTAAAGAAGACAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR TCA 90 bp | AACAAGTTTCTGCTGAGCTTTGTCAAACCAAACAGCTCAACTCTAAGGCAAGATTTGGCAGCCAGGTCTTaGGCAGCTGTCTCCAGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: NKFLLSFVKPNSSTLRQDLAARS*AAVSRS Trigger: TGACCTGGAGACAGCTGCTCAAGACCTGGCTGCCAA...ATCTTGCCTTAGAGTTGAGCTGTTTGGTTTGACAAAGCTCAGCAGAAACTTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR GCA 90 bp | CTTCTTTACTTTTCTGTGGTGATAGGAATGGAACCCAGGGCCTGGCACACACGGAGCCCGAAGTGCTTCTaGATAAAACAGATACTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: LLYFSVVIGMEPRAWHTRSPKCF*IKQILL Trigger: AAGGAGTATCTGTTTTATGCAGAAGCACTTCGGGCT...CCGTGTGTGCCAGGCCCTGGGTTCCATTCCTATCACCACAGAAAAGTAAAGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR CCA 90 bp | TTCTACCAACCTTATCTTTTCGAAAACCATAGCAAAGCCAAGAGTGGCTCATGCCTCTGCCCGCTTTTCTaGGAGAGGTGGCACAACAAC | + |
|
Preference number: 4 (lower is better) Translates to: FYQPYLFENHSKAKSGSCLCPLF*ERWHNN Trigger: GTTGTTGTGCCACCTCTCCCAGAAAAGCGGGCAGAG...GCATGAGCCACTCTTGGCTTTGCTATGGTTTTCGAAAAGATAAGGTTGGTAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR CCA 90 bp | TTAGAAATAATGAGTGCACGGTTAGGAGGAGTCTGCAAGCTGGCAGAGAGTGTGTCTCTCCACAAAGTCTaGGTCCATGTTGTCAGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: LEIMSARLGGVCKLAESVSLHKV*VHVVSR Trigger: TCTGCTGACAACATGGACCCAGACTTTGTGGAGAGA...CACACTCTCTGCCAGCTTGCAGACTCCTCCTAACCGTGCACTCATTATTTCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS-3UTR CCA 90 bp | GCTGGCAGAGAGTGTGCTTGGCTTCTGAACATGTGCCATGAAACACACACTAAACTAGCACCTTTATCCTaGCTTCTCTTTGCTCTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: AGRECAWLLNMCHETHTKLAPLS*LLFALE Trigger: CTCCAGAGCAAAGAGAAGCCAGGATAAAGGTGCTAG...TTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGCACACTCTCTGCCAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR GCA 90 bp | ATGTATCTATTCCACTGCAAATCTGAGAAGCTGAGACTTCGTTGTTGGCAGTATATGCCACACGAACTCTaGCCGCTTTTCTGGGAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: MYLFHCKSEKLRLRCWQYMPHEL*PLFWER Trigger: CCTCTCCCAGAAAAGCGGGCAGAGTTCGTGTGGCAT...ATACTGCCAACAACGAAGTCTCAGCTTCTCAGATTTGCAGTGGAATAGATACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS-3UTR TCA 90 bp | CTGAGCTTTGTCAAACCAAACAGCTCAACTCTAAGGCAAGATAAAATAACTGTATCCACAGCGAGTCTGTaGGCACACTCTGACCATCGG | + |
|
Preference number: 4 (lower is better) Translates to: LSFVKPNSSTLRQDKITVSTASL*AHSDHR Trigger: CCGATGGTCAGAGTGTGCTCACAGACTCGCTGTGGA...TACAGTTATTTTATCTTGCCTTAGAGTTGAGCTGTTTGGTTTGACAAAGCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS-3UTR TCA 90 bp | CTGAGCTTTGTCAAACCAAACAGCTCAACTCTAAGGCAAGATAAAATAACTGTAGCATACACGTCCATGTaGTGCCCAGCACTCTGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LSFVKPNSSTLRQDKITVAYTSM*CPALCS Trigger: GCTGCAGAGTGCTGGGCATCACATGGACGTGTATGC...TACAGTTATTTTATCTTGCCTTAGAGTTGAGCTGTTTGGTTTGACAAAGCTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR GCA 90 bp | CTTCTTTACTTTTCTGTGGTGATAGGAATGGAACCCAGGGCCTGGCACACACGGTTTTTAGACTTCAGCTaGTGTTCCCCTTCATTTATC | + |
|
Preference number: 4 (lower is better) Translates to: LLYFSVVIGMEPRAWHTRFLDFS*CSPSFI Trigger: GATAAATGAAGGGGAACAGCAGCTGAAGTCTAAAAA...CCGTGTGTGCCAGGCCCTGGGTTCCATTCCTATCACCACAGAAAAGTAAAGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR GCA 90 bp | CATAAAACAGATACTCCTTCAGCTGATCTGCATAGTGCTCTTCATCTTCCAAAATCAGCAGAGAGTTTATaGCACACGAACTCTGCCCGC | + |
|
Preference number: 4 (lower is better) Translates to: HKTDTPSADLHSALHLPKSAESL*HTNSAR Trigger: GCGGGCAGAGTTCGTGTGGCATAAACTCTCTGCTGA...TTTTGGAAGATGAAGAGCACTATGCAGATCAGCTGAAGGAGTATCTGTTTTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| CDS-3UTR GCA 90 bp | GCTTGGCTTCTGAACATGTGCCATGAAACACACACTAAAGCACAACAACATCATACCATAGAGTCGATCTaGTACTCTAGCTCTGACTCG | + |
|
Preference number: 4 (lower is better) Translates to: AWLLNMCHETHTKAQQHHTIESI*YSSSDS Trigger: CGAGTCAGAGCTAGAGTAGCAGATCGACTCTATGGT...ATGATGTTGTTGTGCTTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| 3UTR CAA 72 bp | ATGAGAGCTTCCTTTAGGTCCCGGTTCTTTTGTTCTTaGAAGCGTTCAATATCAGCCCATGCATTTTTCACA | + |
|
Preference number: 4 (lower is better) Translates to: MRASFRSRFFCS*KRSISAHAFFT Trigger: TGTGAAAAATGCATGGGCTGATATTGAACGCTTCAAAGAACAAAAGAACCGGGACCTAAAGGAAGCTCTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| CDS-3UTR CCA 90 bp | CACTTCATGGGGTTACATCTTGCTGAAGCATTCTTTAGCATTGGTCCAAACCTGAGTAAACCTCTTGTCTaGGTTTTTCACTCTGAATGT | + |
|
Preference number: 4 (lower is better) Translates to: HFMGLHLAEAFFSIGPNLSKPLV*VFHSEC Trigger: ACATTCAGAGTGAAAAACCCAGACAAGAGGTTTACT...CAGGTTTGGACCAATGCTAAAGAATGCTTCAGCAAGATGTAACCCCATGAAGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| CDS-3UTR GCA 90 bp | CTGAGCTTTGTCAAACCAAACAGCTCAACTCTAAGGCAAGATAAAATAACTGTAGCACACAGCCCGAAGTaGTTCTGCATAAAACAGATA | + |
|
Preference number: 4 (lower is better) Translates to: LSFVKPNSSTLRQDKITVAHSPK*FCIKQI Trigger: TATCTGTTTTATGCAGAAGCACTTCGGGCTGTGTGC...TACAGTTATTTTATCTTGCCTTAGAGTTGAGCTGTTTGGTTTGACAAAGCTCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR CCA 90 bp | TTCTACCAACCTTATCTTTTCGAAAACCATAGCAAAGCCAAGAGTGGCTCATGCAGTAAACCTCTTGTCTaGGTTTTTCACTCTGAATGT | + |
|
Preference number: 4 (lower is better) Translates to: FYQPYLFENHSKAKSGSCSKPLV*VFHSEC Trigger: ACATTCAGAGTGAAAAACCCAGACAAGAGGTTTACT...GCATGAGCCACTCTTGGCTTTGCTATGGTTTTCGAAAAGATAAGGTTGGTAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR GCA 90 bp | CTGAGCTTTGTCAAACCAAACAGCTCAACTCTAAGGCAAGATAAAATAACTGTATCCCCTTCATTTATCTaGTCCTCTAGCACCTTTATC | + |
|
Preference number: 4 (lower is better) Translates to: LSFVKPNSSTLRQDKITVSPSFI*SSSTFI Trigger: GATAAAGGTGCTAGAGGAGCAGATAAATGAAGGGGA...TACAGTTATTTTATCTTGCCTTAGAGTTGAGCTGTTTGGTTTGACAAAGCTCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS GCA 90 bp | AATTATTTCCCGTCATCGTGTCGACCCCTGAGCCGTCTTCTCGGGTaGCCTCGTTCTCCTCACCGACCGCGGCCTCCAGCACAGCGCCAG | + |
|
Preference number: 5 (lower is better) Translates to: NYFPSSCRPLSRLLG*PRSPHRPRPPAQRQ Trigger: CTGGCGCTGTGCTGGAGGCCGCGGTCGGTGAGGAGAACGAGGGCACCCGAGAAGACGGCTCAGGGGTCGACACGATGACGGGAAATAATT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS TCA 90 bp | TTCTCAACAACTCGAACTCACTGTACCGCCTCCACAGCGAGTCTGTaGGCACACTCTGACCATCGGCATGCTCAACTGACCGAGTCTCGA | + |
|
Preference number: 5 (lower is better) Translates to: FSTTRTHCTASTASL*AHSDHRHAQLTESR Trigger: TCGAGACTCGGTCAGTTGAGCATGCCGATGGTCAGAGTGTGCTCACAGACTCGCTGTGGAGGCGGTACAGTGAGTTCGAGTTGTTGAGAA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS-3UTR CAA 90 bp | GAGAGGTGCACATGGAGATTAACTCACATCCTGACGGAGGCACTGGATCAGGAGAGCTCAGTAAACCTCTaGTCTGGGTTTTTCACTCTG | + |
|
Preference number: 5 (lower is better) Translates to: ERCTWRLTHILTEALDQESSVNL*SGFFTL Trigger: CAGAGTGAAAAACCCAGACAAGAGGTTTACTGAGCT...CTCCTGATCCAGTGCCTCCGTCAGGATGTGAGTTAATCTCCATGTGCACCTCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS-3UTR CAA 90 bp | GCTCATGCTTCCTGCACACAGCCCGAAGTGCTTCTGCATAAAACAGATACTCCTAAGTCTGGGTCCATGTaGTCAGCAGAGAGTTTATGC | + |
|
Preference number: 5 (lower is better) Translates to: AHASCTQPEVLLHKTDTPKSGSM*SAESLC Trigger: GCATAAACTCTCTGCTGACAACATGGACCCAGACTT...AGGAGTATCTGTTTTATGCAGAAGCACTTCGGGCTGTGTGCAGGAAGCATGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231389.2 |
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| CDS-3UTR CAA 90 bp | AACAAGTTTCTGCTGAGCTTTGTCAAACCAAACAGCTCAACTCTAAGGCAAGATCTTGGCAGCCAGGTCTaGAGCAGCTGTCTCCAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: NKFLLSFVKPNSSTLRQDLGSQV*SSCLQV Trigger: GACCTGGAGACAGCTGCTCAAGACCTGGCTGCCAAG...ATCTTGCCTTAGAGTTGAGCTGTTTGGTTTGACAAAGCTCAGCAGAAACTTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR CAA 90 bp | AAACGCCATGAGCACAGAGCCGAGCAGAAGAAATGGAGGCTGCTGCCGAAGTTACGGTTCTTTTGTTCTTaGAAGCGTTCAATATCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: KRHEHRAEQKKWRLLPKLRFFCS*KRSISA Trigger: GGCTGATATTGAACGCTTCAAAGAACAAAAGAACCG...TAACTTCGGCAGCAGCCTCCATTTCTTCTGCTCGGCTCTGTGCTCATGGCGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR CAA 90 bp | GCTTGGCTTCTGAACATGTGCCATGAAACACACACTAAAGCACAACAACATCATAAGTCTGGGTCCATGTaGTCAGCAGAGAGTTTATGC | + |
|
Preference number: 5 (lower is better) Translates to: AWLLNMCHETHTKAQQHHKSGSM*SAESLC Trigger: GCATAAACTCTCTGCTGACAACATGGACCCAGACTT...ATGATGTTGTTGTGCTTTAGTGTGTGTTTCATGGCACATGTTCAGAAGCCAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS-3UTR CAA 90 bp | GGCAGAGATAGGTTTTTGTGTCTAGCCTTATCTATAAAACTACTTCCAGGACTGTATCCTGGCTTCTCTTaGCTCTGGAGTTTCTTGACC | + |
|
Preference number: 5 (lower is better) Translates to: GRDRFLCLALSIKLLPGLYPGFS*LWSFLT Trigger: GGTCAAGAAACTCCAGAGCAAAGAGAAGCCAGGATA...CAGTCCTGGAAGTAGTTTTATAGATAAGGCTAGACACAAAAACCTATCTCTGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS-3UTR CAA 90 bp | ATGTATCTATTCCACTGCAAATCTGAGAAGCTGAGACTTCGTTGTTGGCAGTATAGCTCAGTAAACCTCTaGTCTGGGTTTTTCACTCTG | + |
|
Preference number: 5 (lower is better) Translates to: MYLFHCKSEKLRLRCWQYSSVNL*SGFFTL Trigger: CAGAGTGAAAAACCCAGACAAGAGGTTTACTGAGCT...ATACTGCCAACAACGAAGTCTCAGCTTCTCAGATTTGCAGTGGAATAGATACAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS-3UTR CAA 90 bp | GGCAGAGATAGGTTTTTGTGTCTAGCCTTATCTATAAAACTACTTCCAGGACTGTTGCTCTGGAGTTTCTaGACCAAAGAGTTTGGTAGT | + |
|
Preference number: 5 (lower is better) Translates to: GRDRFLCLALSIKLLPGLLLWSF*TKEFGS Trigger: ACTACCAAACTCTTTGGTCAAGAAACTCCAGAGCAA...CAGTCCTGGAAGTAGTTTTATAGATAAGGCTAGACACAAAAACCTATCTCTGCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023502.6 |
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| CDS GCA 72 bp | GCGCCAGGGCCACCCAGCGGCTCCAGGGGTCCAGGCTaGAAGAGCTTCTCGGGGTCCGGAGGTGCCTGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: APGPPSGSRGPG*KSFSGSGGACS Trigger: GGAGCAGGCACCTCCGGACCCCGAGAAGCTCTTGCAGCCTGGACCCCTGGAGCCGCTGGGTGGCCCTGGCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS GCA 72 bp | CCGTCATCGTGTCGACCCCTGAGCCGTCTTCTCGGGTaGCCTCGTTCTCCTCACCGACCGCGGCCTCCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: PSSCRPLSRLLG*PRSPHRPRPPA Trigger: TGCTGGAGGCCGCGGTCGGTGAGGAGAACGAGGGCACCCGAGAAGACGGCTCAGGGGTCGACACGATGACGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS TCA 72 bp | ACTCGAACTCACTGTACCGCCTCCACAGCGAGTCTGTaGGCACACTCTGACCATCGGCATGCTCAACTGACC | + |
|
Preference number: 6 (lower is better) Translates to: TRTHCTASTASL*AHSDHRHAQLT Trigger: GGTCAGTTGAGCATGCCGATGGTCAGAGTGTGCTCACAGACTCGCTGTGGAGGCGGTACAGTGAGTTCGAGT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS CAA 72 bp | CCCACGCGTCGTCTCTCCACAAAGTCTGGGTCCATGTaGTCAGCAGAGAGTTTATGCCACACGAACTCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: PTRRLSTKSGSM*SAESLCHTNSA Trigger: GGCAGAGTTCGTGTGGCATAAACTCTCTGCTGACAACATGGACCCAGACTTTGTGGAGAGACGACGCGTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS TCA 72 bp | GTCTGTGAGCACACTCTGACCATCGGCATGCTCAACTaGCCGAGTCTCGATGAGGTAGGCAGTGTACGTTTC | + |
|
Preference number: 6 (lower is better) Translates to: VCEHTLTIGMLN*PSLDEVGSVRF Trigger: GAAACGTACACTGCCTACCTCATCGAGACTCGGTCAGTTGAGCATGCCGATGGTCAGAGTGTGCTCACAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS CAA 90 bp | TTTTCTAAGCCCACGCGTCGTCTCTCCACAAAGTCTGGGTCCATGTaGTCAGCAGAGAGTTTATGCCACACGAACTCTGCCCGCTTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: FSKPTRRLSTKSGSM*SAESLCHTNSARFS Trigger: AGAAAAGCGGGCAGAGTTCGTGTGGCATAAACTCTCTGCTGACAACATGGACCCAGACTTTGTGGAGAGACGACGCGTGGGCTTAGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS GCA 72 bp | ACAAAGTCTGGGTCCATGTTGTCAGCAGAGAGTTTATaGCACACGAACTCTGCCCGCTTTTCTGGGAGAGGT | + |
|
Preference number: 6 (lower is better) Translates to: TKSGSMLSAESL*HTNSARFSGRG Trigger: ACCTCTCCCAGAAAAGCGGGCAGAGTTCGTGTGGCATAAACTCTCTGCTGACAACATGGACCCAGACTTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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| CDS CCA 72 bp | ATCACTGTAGTGCCTCAGCTCAGTAAACCTCTTGTCTaGGTTTTTCACTCTGAATGTTGCATTAAGCGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: ITVVPQLSKPLV*VFHSECCIKRF Trigger: AAAGCGCTTAATGCAACATTCAGAGTGAAAAACCCAGACAAGAGGTTTACTGAGCTGAGGCACTACAGTGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023502.6 ENSMUST00000231389.2 |
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