Pregenerated sensors for SNX3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019804Ensembl transcript IDs: ENSMUST00000019939.12, ENSMUST00000105499.2, ENSMUST00000105500.8
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTAGTCAGGACACTGCAGGTTCTACGGGGCTGTGGGGCTACAGTGTaGACACGGACACAGCGGGAAGAGCTACTTAGAGAGGCTGGAGCG | + |
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Preference number: 1 (lower is better) Translates to: LVRTLQVLRGCGATV*TRTQREELLREAGA Trigger: CGCTCCAGCCTCTCTAAGTAGCTCTTCCCGCTGTGTCCGTGTGCACACTGTAGCCCCACAGCCCCGTAGAACCTGCAGTGTCCTGACTAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| 3UTR-3UTR GCA 90 bp | GCTGGAGACAAGTGGTGTCGTGCTCCTGCACATAAATTAGGACCAGGTGGTGACACCCAGGGCATGCTATaGCAGTGTCTGCGCAGCATG | + |
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Preference number: 2 (lower is better) Translates to: AGDKWCRAPAHKLGPGGDTQGML*QCLRSM Trigger: CATGCTGCGCAGACACTGGCATAGCATGCCCTGGGT...GTCACCACCTGGTCCTAATTTATGTGCAGGAGCACGACACCACTTGTCTCCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| 3UTR-3UTR GCA 90 bp | GCTGGAGACAAGTGGTGTCGTGCTCCTGCACATAAATTAGGACCAGGTGGTGACGAATGTCTTGTCAACTaGCAAGACAAGCGGAACGAA | + |
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Preference number: 2 (lower is better) Translates to: AGDKWCRAPAHKLGPGGDECLVN*QDKRNE Trigger: TTCGTTCCGCTTGTCTTGGCAGTTGACAAGACATTC...GTCACCACCTGGTCCTAATTTATGTGCAGGAGCACGACACCACTTGTCTCCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| 3UTR-3UTR GCA 90 bp | AAACATGACACAGAAACTGCAAATGAGAGCAAGTCGGCAGCTTTAGTCAGGACAAGTGTACCCAGGGCATaGTATGCCAGTGTCTGCGCA | + |
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Preference number: 2 (lower is better) Translates to: KHDTETANESKSAALVRTSVPRA*YASVCA Trigger: TGCGCAGACACTGGCATAGCATGCCCTGGGTACACT...TGTCCTGACTAAAGCTGCCGACTTGCTCTCATTTGCAGTTTCTGTGTCATGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| 3UTR-3UTR GCA 90 bp | ATTAATCTTTCATGGGAAGGGGATTACAGGCCAGAAGGAAGACACATTCTGCACGAATGTCTTGTCAACTaGCAAGACAAGCGGAACGAA | + |
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Preference number: 2 (lower is better) Translates to: INLSWEGDYRPEGRHILHECLVN*QDKRNE Trigger: TTCGTTCCGCTTGTCTTGGCAGTTGACAAGACATTC...GTGCAGAATGTGTCTTCCTTCTGGCCTGTAATCCCCTTCCCATGAAAGATTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| 3UTR-3UTR CAA 90 bp | AAGTACACCTCGGATGTGTGGCGCTGGAGACAAGTGGTGTCGTGCTCCTGCACAAAGCAAACGAATGTCTaGTCAACTGCCAAGACAAGC | + |
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Preference number: 3 (lower is better) Translates to: KYTSDVWRWRQVVSCSCTKQTNV*STAKTS Trigger: GCTTGTCTTGGCAGTTGACAAGACATTCGTTTGCTT...TGTGCAGGAGCACGACACCACTTGTCTCCAGCGCCACACATCCGAGGTGTACTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| 3UTR-3UTR CAA 90 bp | ATTCTGCACACAAAGTACACCTCGGATGTGTGGCGCTGGAGACAAGTGGTGTCGAAGCAAACGAATGTCTaGTCAACTGCCAAGACAAGC | + |
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Preference number: 3 (lower is better) Translates to: ILHTKYTSDVWRWRQVVSKQTNV*STAKTS Trigger: GCTTGTCTTGGCAGTTGACAAGACATTCGTTTGCTT...CGACACCACTTGTCTCCAGCGCCACACATCCGAGGTGTACTTTGTGTGCAGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR GCA 90 bp | GAGCAAGTCGGCAGCTTTAGTCAGGACACTGCAGGTTCTACGGGGCTGTGGGGCCCACGGTCTGCGGGTTaGTCACGTCGATCTCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: EQVGSFSQDTAGSTGLWGPRSAG*SRRSRG Trigger: TCCTCGAGATCGACGTGAGCAACCCGCAGACCGTGG...GCCCCACAGCCCCGTAGAACCTGCAGTGTCCTGACTAAAGCTGCCGACTTGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR GCA 90 bp | GTCAACTGCCAAGACAAGCGGAACGAAAGGGAGCAGGTGAGTGTTAGTGTACCCCCGACCCCCACGGTCTaGGGGTTGCTCACGTCGATC | + |
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Preference number: 4 (lower is better) Translates to: VNCQDKRNEREQVSVSVPPTPTV*GLLTSI Trigger: GATCGACGTGAGCAACCCGCAGACCGTGGGGGTCGG...GGGTACACTAACACTCACCTGCTCCCTTTCGTTCCGCTTGTCTTGGCAGTTGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR GCA 90 bp | GACACATTCTGCACACAAAGTACACCTCGGATGTGTGGCGCTGGAGACAAGTGGCCACGGTCTGCGGGTTaGTCACGTCGATCTCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: DTFCTQSTPRMCGAGDKWPRSAG*SRRSRG Trigger: TCCTCGAGATCGACGTGAGCAACCCGCAGACCGTGG...CCACTTGTCTCCAGCGCCACACATCCGAGGTGTACTTTGTGTGCAGAATGTGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR GCA 90 bp | GGGAAGAGCTACTTAGAGAGGCTGGAGCGAGGGAGTTTCACTAAAGCAAACGAACCGACCCCCACGGTCTaGGGGTTGCTCACGTCGATC | + |
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Preference number: 4 (lower is better) Translates to: GKSYLERLERGSFTKANEPTPTV*GLLTSI Trigger: GATCGACGTGAGCAACCCGCAGACCGTGGGGGTCGG...TTCGTTTGCTTTAGTGAAACTCCCTCGCTCCAGCCTCTCTAAGTAGCTCTTCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR GCA 90 bp | ATTCTGCACACAAAGTACACCTCGGATGTGTGGCGCTGGAGACAAGTGGTGTCGAAGCTGCCGCAAAAATaGTTTCCCAGGGAGTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: ILHTKYTSDVWRWRQVVSKLPQK*FPREWG Trigger: CCCCCACTCCCTGGGAAAGCATTTTTGCGGCAGCTT...CGACACCACTTGTCTCCAGCGCCACACATCCGAGGTGTACTTTGTGTGCAGAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR TCA 90 bp | GCTGGAGACAAGTGGTGTCGTGCTCCTGCACATAAATTAGGACCAGGTGGTGACTTCTGGGCCAGAGGATaGCCAGCGACCTTGTTTATG | + |
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Preference number: 4 (lower is better) Translates to: AGDKWCRAPAHKLGPGGDFWARG*PATLFM Trigger: CATAAACAAGGTCGCTGGTCATCCTCTGGCCCAGAA...GTCACCACCTGGTCCTAATTTATGTGCAGGAGCACGACACCACTTGTCTCCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR GCA 90 bp | GCTTTAGTCAGGACACTGCAGGTTCTACGGGGCTGTGGGGCTACAGTGTGCACACCTCTAAAAGGAAGCTaGCGCAAAAATGCTTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: ALVRTLQVLRGCGATVCTPLKGS*RKNAFP Trigger: TGGGAAAGCATTTTTGCGGCAGCTTCCTTTTAGAGG...TGTGCACACTGTAGCCCCACAGCCCCGTAGAACCTGCAGTGTCCTGACTAAAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR CCA 90 bp | CAGAAGGAAGACACATTCTGCACACAAAGTACACCTCGGATGTGTGGCGCTGGATGCTTTCCCAGGGAGTaGGGGAACTACAACCTTGAC | + |
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Preference number: 4 (lower is better) Translates to: QKEDTFCTQSTPRMCGAGCFPRE*GNYNLD Trigger: GTCAAGGTTGTAGTTCCCCCACTCCCTGGGAAAGCA...TCCAGCGCCACACATCCGAGGTGTACTTTGTGTGCAGAATGTGTCTTCCTTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105499.2 |
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| CDS-3UTR TCA 90 bp | AAGTACACCTCGGATGTGTGGCGCTGGAGACAAGTGGTGTCGTGCTCCTGCACATCCTGTAAAAACATGTaGAGACAACGTTCATTCTGG | + |
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Preference number: 4 (lower is better) Translates to: KYTSDVWRWRQVVSCSCTSCKNM*RQRSFW Trigger: CCAGAATGAACGTTGTCTTCACATGTTTTTACAGGA...TGTGCAGGAGCACGACACCACTTGTCTCCAGCGCCACACATCCGAGGTGTACTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR GCA 90 bp | CGGATGTGTGGCGCTGGAGACAAGTGGTGTCGTGCTCCTGCACATAAATTAGGAGGGGAACTACAACCTTaGTCTCTCTTTCTAGTTCAC | + |
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Preference number: 4 (lower is better) Translates to: RMCGAGDKWCRAPAHKLGGELQP*SLFLVH Trigger: GTGAACTAGAAAGAGAGAGCAAGGTTGTAGTTCCCC...TCCTAATTTATGTGCAGGAGCACGACACCACTTGTCTCCAGCGCCACACATCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019939.12 |
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| CDS-3UTR GCA 90 bp | GCTGGAGACAAGTGGTGTCGTGCTCCTGCACATAAATTAGGACCAGGTGGTGACCCTCTAAAAGGAAGCTaGCGCAAAAATGCTTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: AGDKWCRAPAHKLGPGGDPLKGS*RKNAFP Trigger: TGGGAAAGCATTTTTGCGGCAGCTTCCTTTTAGAGG...GTCACCACCTGGTCCTAATTTATGTGCAGGAGCACGACACCACTTGTCTCCAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR GCA 90 bp | ATTAATCTTTCATGGGAAGGGGATTACAGGCCAGAAGGAAGACACATTCTGCACAAGCTGCCGCAAAAATaGTTTCCCAGGGAGTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: INLSWEGDYRPEGRHILHKLPQK*FPREWG Trigger: CCCCCACTCCCTGGGAAAGCATTTTTGCGGCAGCTT...GTGCAGAATGTGTCTTCCTTCTGGCCTGTAATCCCCTTCCCATGAAAGATTAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR CCA 90 bp | AGCTACTTAGAGAGGCTGGAGCGAGGGAGTTTCACTAAAGCAAACGAATGTCTTTGCTTTCCCAGGGAGTaGGGGAACTACAACCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: SYLERLERGSFTKANECLCFPRE*GNYNLA Trigger: AGCAAGGTTGTAGTTCCCCCACTCCCTGGGAAAGCA...AAGACATTCGTTTGCTTTAGTGAAACTCCCTCGCTCCAGCCTCTCTAAGTAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019939.12 |
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| CDS-3UTR TCA 90 bp | CAGAAGGAAGACACATTCTGCACACAAAGTACACCTCGGATGTGTGGCGCTGGATCCTGTAAAAACATGTaGAGACAACGTTCATTCTGG | + |
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Preference number: 4 (lower is better) Translates to: QKEDTFCTQSTPRMCGAGSCKNM*RQRSFW Trigger: CCAGAATGAACGTTGTCTTCACATGTTTTTACAGGA...TCCAGCGCCACACATCCGAGGTGTACTTTGTGTGCAGAATGTGTCTTCCTTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR TCA 90 bp | CAGAAGGAAGACACATTCTGCACACAAAGTACACCTCGGATGTGTGGCGCTGGAGCTTCCTTTCCTCGATaGAATTGTCATCAAATATTC | + |
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Preference number: 4 (lower is better) Translates to: QKEDTFCTQSTPRMCGAGASFPR*NCHQIF Trigger: GAATATTTGATGACAATTTCATCGAGGAAAGGAAGC...TCCAGCGCCACACATCCGAGGTGTACTTTGTGTGCAGAATGTGTCTTCCTTCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR TCA 90 bp | CTAGTTAGTTACAACTTCTTCATTGGTGCGGATGAATCATTAATGGTCTCGGGTCAGCGACCTTGTTTATaGACTGTTCCAGCCCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: LVSYNFFIGADESLMVSGQRPCL*TVPALA Trigger: AGCAAGGGCTGGAACAGTTCATAAACAAGGTCGCTG...ACCCGAGACCATTAATGATTCATCCGCACCAATGAAGAAGTTGTAACTAACTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR TCA 90 bp | AAACATGACACAGAAACTGCAAATGAGAGCAAGTCGGCAGCTTTAGTCAGGACAGCTTCCTTTCCTCGATaGAATTGTCATCAAATATTC | + |
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Preference number: 4 (lower is better) Translates to: KHDTETANESKSAALVRTASFPR*NCHQIF Trigger: GAATATTTGATGACAATTTCATCGAGGAAAGGAAGC...TGTCCTGACTAAAGCTGCCGACTTGCTCTCATTTGCAGTTTCTGTGTCATGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR TCA 90 bp | ATTCTAGTCAATCAGATTCAAGAAGCAAACATGACACAGAAACTGCAAATGAGACAGCGACCTTGTTTATaGACTGTTCCAGCCCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: ILVNQIQEANMTQKLQMRQRPCL*TVPALA Trigger: AGCAAGGGCTGGAACAGTTCATAAACAAGGTCGCTG...TCTCATTTGCAGTTTCTGTGTCATGTTTGCTTCTTGAATCTGATTGACTAGAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR CAA 90 bp | CGGATGTGTGGCGCTGGAGACAAGTGGTGTCGTGCTCCTGCACATAAATTAGGATTCAGATTCTGCGGCTaGGTGATGAGCCGCCGGGTG | + |
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Preference number: 5 (lower is better) Translates to: RMCGAGDKWCRAPAHKLGFRFCG*VMSRRV Trigger: CACCCGGCGGCTCATCACCAAGCCGCAGAATCTGAA...TCCTAATTTATGTGCAGGAGCACGACACCACTTGTCTCCAGCGCCACACATCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR CAA 90 bp | AGCTACTTAGAGAGGCTGGAGCGAGGGAGTTTCACTAAAGCAAACGAATGTCTTCCCACGGTCTGCGGGTaGCTCACGTCGATCTCGAGG | + |
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Preference number: 5 (lower is better) Translates to: SYLERLERGSFTKANECLPTVCG*LTSISR Trigger: CCTCGAGATCGACGTGAGCAACCCGCAGACCGTGGG...AAGACATTCGTTTGCTTTAGTGAAACTCCCTCGCTCCAGCCTCTCTAAGTAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR CAA 90 bp | GCTTTAGTCAGGACACTGCAGGTTCTACGGGGCTGTGGGGCTACAGTGTGCACAGAACTGTTCCAGCCCTaGCTTCCTTTCCTCGATGAA | + |
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Preference number: 5 (lower is better) Translates to: ALVRTLQVLRGCGATVCTELFQP*LPFLDE Trigger: TTCATCGAGGAAAGGAAGCAAGGGCTGGAACAGTTC...TGTGCACACTGTAGCCCCACAGCCCCGTAGAACCTGCAGTGTCCTGACTAAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR CAA 90 bp | ATTAATCTTTCATGGGAAGGGGATTACAGGCCAGAAGGAAGACACATTCTGCACCCCACGGTCTGCGGGTaGCTCACGTCGATCTCGAGG | + |
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Preference number: 5 (lower is better) Translates to: INLSWEGDYRPEGRHILHPTVCG*LTSISR Trigger: CCTCGAGATCGACGTGAGCAACCCGCAGACCGTGGG...GTGCAGAATGTGTCTTCCTTCTGGCCTGTAATCCCCTTCCCATGAAAGATTAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 |
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| CDS-3UTR CAA 90 bp | TGTGGCGCTGGAGACAAGTGGTGTCGTGCTCCTGCACATAAATTAGGACCAGGTGGGGGAACTACAACCTaGCTCTCTCTTTCTAGTTCA | + |
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Preference number: 5 (lower is better) Translates to: CGAGDKWCRAPAHKLGPGGGTTT*LSLSSS Trigger: TGAACTAGAAAGAGAGAGCAAGGTTGTAGTTCCCCC...ACCTGGTCCTAATTTATGTGCAGGAGCACGACACCACTTGTCTCCAGCGCCACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019939.12 |
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| CDS CAA 90 bp | GGCCAGAGGATGACCAGCGACCTTGTTTATGAACTGTTCCAGCCCTaGCTTCCTTTCCTCGATGAAATTGTCATCAAATATTCCATCGTC | + |
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Preference number: 6 (lower is better) Translates to: GQRMTSDLVYELFQP*LPFLDEIVIKYSIV Trigger: GACGATGGAATATTTGATGACAATTTCATCGAGGAAAGGAAGCAAGGGCTGGAACAGTTCATAAACAAGGTCGCTGGTCATCCTCTGGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019939.12 ENSMUST00000105499.2 ENSMUST00000105500.8 |
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