Pregenerated sensors for SNX24 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024535Ensembl transcript IDs: ENSMUST00000025417.9, ENSMUST00000165032.9
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGGTGTCAGCTGGTTTTCAGAGGCGCACTCATACTTTCCAGTACTaGAGGGAGAGGATGAGGGAGGTCAGACTTCCCATACAGCGCCTT | + |
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Preference number: 1 (lower is better) Translates to: GVSAGFQRRTHTFQY*RERMREVRLPIQRL Trigger: AAGGCGCTGTATGGGAAGTCTGACCTCCCTCATCCTCTCCCTCCAGTACTGGAAAGTATGAGTGCGCCTCTGAAAACCAGCTGACACCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| 3UTR CCA 90 bp | TGCCCACACTCCAGAATACAGTATCCCCCACTGAGAGAACTCTCATaGCGCAAAGATGAGGGTGTCCAAGGTCTGAGCAAAAGGCCACCG | + |
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Preference number: 1 (lower is better) Translates to: CPHSRIQYPPLRELS*RKDEGVQGLSKRPP Trigger: CGGTGGCCTTTTGCTCAGACCTTGGACACCCTCATCTTTGCGCCATGAGAGTTCTCTCAGTGGGGGATACTGTATTCTGGAGTGTGGGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| 3UTR TCA 90 bp | CATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTAAGTaGAAGATGACCGTCTGTTTGACATCCAGTGGAGAGACAGCATCG | + |
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Preference number: 1 (lower is better) Translates to: HLHTGRTYALYPITK*KMTVCLTSSGETAS Trigger: CGATGCTGTCTCTCCACTGGATGTCAAACAGACGGTCATCTTTCACTTAGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| 3UTR CCA 90 bp | AAGCAGAGGCTGGCTCTATTTTGTGACACTCCCAGTAATCCACTGTaGCCTCCTTTTCCTAACCTCTCTTGTAATTTCCCTTTCACTTCT | + |
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Preference number: 1 (lower is better) Translates to: KQRLALFCDTPSNPL*PPFPNLSCNFPFTS Trigger: AGAAGTGAAAGGGAAATTACAAGAGAGGTTAGGAAAAGGAGGCCACAGTGGATTACTGGGAGTGTCACAAAATAGAGCCAGCCTCTGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| 3UTR TCA 90 bp | ACCATTCTAATAGAAATGTCCCTGCTCCAAAGGAAGCTGGAACTGTaGATTTTCCCACTAGCTAGAGCTATTGTGTCTCAGAGTTTCGGT | + |
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Preference number: 1 (lower is better) Translates to: TILIEMSLLQRKLEL*IFPLARAIVSQSFG Trigger: ACCGAAACTCTGAGACACAATAGCTCTAGCTAGTGGGAAAATTCACAGTTCCAGCTTCCTTTGGAGCAGGGACATTTCTATTAGAATGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| 3UTR-3UTR GCA 90 bp | TGCTCCTATTGTGGCCACTGTGACCCCATGTCCCATTCCTGCAGGACAAGAATTAGCGCCTTTCTAGAGTaGTCTCAAGGGTGGTCCCAA | + |
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Preference number: 2 (lower is better) Translates to: CSYCGHCDPMSHSCRTRISAFLE*SQGWSQ Trigger: TTGGGACCACCCTTGAGAGCACTCTAGAAAGGCGCT...AATTCTTGTCCTGCAGGAATGGGACATGGGGTCACAGTGGCCACAATAGGAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| 3UTR-3UTR CCA 90 bp | TGCTCCTATTGTGGCCACTGTGACCCCATGTCCCATTCCTGCAGGACAAGAATTCATACTTTCCAGTACTaGAGGGAGAGGATGAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: CSYCGHCDPMSHSCRTRIHTFQY*RERMRE Trigger: CTCCCTCATCCTCTCCCTCCAGTACTGGAAAGTATG...AATTCTTGTCCTGCAGGAATGGGACATGGGGTCACAGTGGCCACAATAGGAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| 3UTR-3UTR CCA 90 bp | GTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTAAGCTGTTTGACATCCAGTaGAGAGACAGCATCGAGCAT | + |
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Preference number: 2 (lower is better) Translates to: VHQHLHTGRTYALYPITKLFDIQ*RDSIEH Trigger: ATGCTCGATGCTGTCTCTCCACTGGATGTCAAACAG...CTTAGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| 3UTR-3UTR CCA 90 bp | TATTTTGTGACACTCCCAGTAATCCACTGTGGCCTCCTTTTCCTAACCTCTCTTCTGTTTGACATCCAGTaGAGAGACAGCATCGAGCAT | + |
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Preference number: 2 (lower is better) Translates to: YFVTLPVIHCGLLFLTSLLFDIQ*RDSIEH Trigger: ATGCTCGATGCTGTCTCTCCACTGGATGTCAAACAG...AAGAGAGGTTAGGAAAAGGAGGCCACAGTGGATTACTGGGAGTGTCACAAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| 3UTR TCA 72 bp | CAAGGGTGGTCCCAACACCCATTTCATCTCCAGCACTaGTGCTGGCAGCTAATCTGTAGGTGGGAGGCATCC | + |
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Preference number: 3 (lower is better) Translates to: QGWSQHPFHLQH*CWQLICRWEAS Trigger: GGATGCCTCCCACCTACAGATTAGCTGCCAGCATCAGTGCTGGAGATGAAATGGGTGTTGGGACCACCCTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| 3UTR CCA 72 bp | TACTGTCAGTATAACTGGATCCTCAGACCGGCACAGTaGGCTCCGGGATACTCTTCAGGTGCCCACACTCCA | + |
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Preference number: 3 (lower is better) Translates to: YCQYNWILRPAQ*APGYSSGAHTP Trigger: TGGAGTGTGGGCACCTGAAGAGTATCCCGGAGCCCACTGTGCCGGTCTGAGGATCCAGTTATACTGACAGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| 3UTR GCA 72 bp | ACACCATTGAGGGAACCGTGCCACAAACAGTCTGTTTaGTCCTATTGTGGCCACTGTGACCCCATGTCCCAT | + |
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Preference number: 3 (lower is better) Translates to: TPLREPCHKQSV*SYCGHCDPMSH Trigger: ATGGGACATGGGGTCACAGTGGCCACAATAGGAGCAAACAGACTGTTTGTGGCACGGTTCCCTCAATGGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| 3UTR CCA 72 bp | GCTGGTTTTCAGAGGCGCACTCATACTTTCCAGTACTaGAGGGAGAGGATGAGGGAGGTCAGACTTCCCATA | + |
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Preference number: 3 (lower is better) Translates to: AGFQRRTHTFQY*RERMREVRLPI Trigger: TATGGGAAGTCTGACCTCCCTCATCCTCTCCCTCCAGTACTGGAAAGTATGAGTGCGCCTCTGAAAACCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| 3UTR TCA 72 bp | ACAGGTAGGACATACGCACTCTACCCCATCACTAAGTaGAAGATGACCGTCTGTTTGACATCCAGTGGAGAG | + |
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Preference number: 3 (lower is better) Translates to: TGRTYALYPITK*KMTVCLTSSGE Trigger: CTCTCCACTGGATGTCAAACAGACGGTCATCTTTCACTTAGTGATGGGGTAGAGTGCGTATGTCCTACCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| 3UTR CCA 72 bp | AATGGAAATGAAAGTGTGTTCTACTGTCAGTATAACTaGATCCTCAGACCGGCACAGTGGGCTCCGGGATAC | + |
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Preference number: 3 (lower is better) Translates to: NGNESVFYCQYN*ILRPAQWAPGY Trigger: GTATCCCGGAGCCCACTGTGCCGGTCTGAGGATCCAGTTATACTGACAGTAGAACACACTTTCATTTCCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| 3UTR TCA 72 bp | ATAGAAATGTCCCTGCTCCAAAGGAAGCTGGAACTGTaGATTTTCCCACTAGCTAGAGCTATTGTGTCTCAG | + |
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Preference number: 3 (lower is better) Translates to: IEMSLLQRKLEL*IFPLARAIVSQ Trigger: CTGAGACACAATAGCTCTAGCTAGTGGGAAAATTCACAGTTCCAGCTTCCTTTGGAGCAGGGACATTTCTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| CDS-3UTR CCA 90 bp | GAACCGTGCCACAAACAGTCTGTTTGCTCCTATTGTGGCCACTGTGACCCCATGAGCAGCACCGGCTGGTaGGACAGCTTGCTTGACTCT | + |
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Preference number: 4 (lower is better) Translates to: EPCHKQSVCSYCGHCDPMSSTGW*DSLLDS Trigger: AGAGTCAAGCAAGCTGTCCCACCAGCCGGTGCTGCT...CATGGGGTCACAGTGGCCACAATAGGAGCAAACAGACTGTTTGTGGCACGGTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CCA 90 bp | TGCTCCTATTGTGGCCACTGTGACCCCATGTCCCATTCCTGCAGGACAAGAATTAACAGCAGCACCGGCTaGTGGGACAGCTTGCTTGAC | + |
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Preference number: 4 (lower is better) Translates to: CSYCGHCDPMSHSCRTRINSSTG*WDSLLD Trigger: GTCAAGCAAGCTGTCCCACCAGCCGGTGCTGCTGTT...AATTCTTGTCCTGCAGGAATGGGACATGGGGTCACAGTGGCCACAATAGGAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| CDS-3UTR CCA 90 bp | GCTGTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTAACAGCAGCACCGGCTaGTGGGACAGCTTGCTTGAC | + |
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Preference number: 4 (lower is better) Translates to: AVHQHLHTGRTYALYPITNSSTG*WDSLLD Trigger: GTCAAGCAAGCTGTCCCACCAGCCGGTGCTGCTGTT...AGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAACAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CCA 90 bp | GAACCGTGCCACAAACAGTCTGTTTGCTCCTATTGTGGCCACTGTGACCCCATGCATTTGGAAAATCGCTaGCTGCAGGCAAGACGTATG | + |
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Preference number: 4 (lower is better) Translates to: EPCHKQSVCSYCGHCDPMHLENR*LQARRM Trigger: CATACGTCTTGCCTGCAGCCAGCGATTTTCCAAATG...CATGGGGTCACAGTGGCCACAATAGGAGCAAACAGACTGTTTGTGGCACGGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR TCA 90 bp | GTGAAAGATGACCGTCTGTTTGACATCCAGTGGAGAGACAGCATCGAGCATCTAGTGGGACAGCTTGCTTaGCTCTTCAGACTCTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: VKDDRLFDIQWRDSIEHLVGQLA*LFRLCL Trigger: GAGACAGAGTCTGAAGAGTCAAGCAAGCTGTCCCAC...TAGATGCTCGATGCTGTCTCTCCACTGGATGTCAAACAGACGGTCATCTTTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR GCA 90 bp | GTGAAAGATGACCGTCTGTTTGACATCCAGTGGAGAGACAGCATCGAGCATCTATACGTTTCCAGGCCTTaGCGCCGTTGTTCCAAGACT | + |
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Preference number: 4 (lower is better) Translates to: VKDDRLFDIQWRDSIEHLYVSRP*RRCSKT Trigger: AGTCTTGGAACAACGGCGGCAAGGCCTGGAAACGTA...TAGATGCTCGATGCTGTCTCTCCACTGGATGTCAAACAGACGGTCATCTTTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CCA 90 bp | GTGAAAGATGACCGTCTGTTTGACATCCAGTGGAGAGACAGCATCGAGCATCTATGCAGGCAAGACGTATaGATCCCCAAGGAACAGCAG | + |
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Preference number: 4 (lower is better) Translates to: VKDDRLFDIQWRDSIEHLCRQDV*IPKEQQ Trigger: CTGCTGTTCCTTGGGGATCCATACGTCTTGCCTGCA...TAGATGCTCGATGCTGTCTCTCCACTGGATGTCAAACAGACGGTCATCTTTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR TCA 90 bp | GAACCGTGCCACAAACAGTCTGTTTGCTCCTATTGTGGCCACTGTGACCCCATGGAGAAAAATATCCCATaGAGAACTCCTTCGATGACC | + |
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Preference number: 4 (lower is better) Translates to: EPCHKQSVCSYCGHCDPMEKNIP*RTPSMT Trigger: GGTCATCGAAGGAGTTCTTCATGGGATATTTTTCTC...CATGGGGTCACAGTGGCCACAATAGGAGCAAACAGACTGTTTGTGGCACGGTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR GCA 90 bp | CTGTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTAGCTGGTGGGACAGCTTaGTTGACTCTTCAGACTCTG | + |
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Preference number: 4 (lower is better) Translates to: LFISIYTQVGHTHSTPSLAGGTA*LTLQTL Trigger: CAGAGTCTGAAGAGTCAAGCAAGCTGTCCCACCAGC...TAGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CCA 90 bp | CTGTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTATGCAGGCAAGACGTATaGATCCCCAAGGAACAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LFISIYTQVGHTHSTPSLCRQDV*IPKEQQ Trigger: CTGCTGTTCCTTGGGGATCCATACGTCTTGCCTGCA...TAGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR TCA 90 bp | GCTGTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTGCAAGTGCCGTACATTaGGGAAGTCAAGGAAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: AVHQHLHTGRTYALYPITASAVH*GSQGRV Trigger: AACTCTTCCTTGACTTCCTCAATGTACGGCACTTGC...AGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAACAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR GCA 90 bp | GTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTAAGGGTAGAGAGGGCAAGTaGCGTACATTGAGGAAGTCA | + |
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Preference number: 4 (lower is better) Translates to: VHQHLHTGRTYALYPITKGREGK*RTLRKS Trigger: TGACTTCCTCAATGTACGGCACTTGCCCTCTCTACC...CTTAGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR GCA 90 bp | TATTTTGTGACACTCCCAGTAATCCACTGTGGCCTCCTTTTCCTAACCTCTCTTGCTGGTGGGACAGCTTaGTTGACTCTTCAGACTCTG | + |
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Preference number: 4 (lower is better) Translates to: YFVTLPVIHCGLLFLTSLAGGTA*LTLQTL Trigger: CAGAGTCTGAAGAGTCAAGCAAGCTGTCCCACCAGC...AAGAGAGGTTAGGAAAAGGAGGCCACAGTGGATTACTGGGAGTGTCACAAAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| CDS-3UTR TCA 90 bp | GTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTAAGGCAAGTGCCGTACATTaGGGAAGTCAAGGAAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: VHQHLHTGRTYALYPITKASAVH*GSQGRV Trigger: AACTCTTCCTTGACTTCCTCAATGTACGGCACTTGC...CTTAGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR GCA 90 bp | TTTAAAAGCACCATTCTAATAGAAATGTCCCTGCTCCAAAGGAAGCTGGAACTGTACGTTTCCAGGCCTTaGCGCCGTTGTTCCAAGACT | + |
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Preference number: 4 (lower is better) Translates to: FKSTILIEMSLLQRKLELYVSRP*RRCSKT Trigger: AGTCTTGGAACAACGGCGGCAAGGCCTGGAAACGTA...CAGTTCCAGCTTCCTTTGGAGCAGGGACATTTCTATTAGAATGGTGCTTTTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| CDS-3UTR CCA 90 bp | GTGAAAGATGACCGTCTGTTTGACATCCAGTGGAGAGACAGCATCGAGCATCTATTTTTGTGCAAGGCATaGAATTCGCTGTACCGTTTC | + |
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Preference number: 4 (lower is better) Translates to: VKDDRLFDIQWRDSIEHLFLCKA*NSLYRF Trigger: GAAACGGTACAGCGAATTCCATGCCTTGCACAAAAA...TAGATGCTCGATGCTGTCTCTCCACTGGATGTCAAACAGACGGTCATCTTTCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CCA 90 bp | GTGAAAGATGACCGTCTGTTTGACATCCAGTGGAGAGACAGCATCGAGCATCTAAGTCAAGGAAGAGTTTaGGAAGCTCTTCATTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: VKDDRLFDIQWRDSIEHLSQGRV*EALHSP Trigger: TGGAGAATGAAGAGCTTCCCAAACTCTTCCTTGACT...TAGATGCTCGATGCTGTCTCTCCACTGGATGTCAAACAGACGGTCATCTTTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR TCA 90 bp | CGTCTGTTTGACATCCAGTGGAGAGACAGCATCGAGCATCTAACTCACTTTAATGAGAAAAATATCCCATaGAGAACTCCTTCGATGACC | + |
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Preference number: 4 (lower is better) Translates to: RLFDIQWRDSIEHLTHFNEKNIP*RTPSMT Trigger: GGTCATCGAAGGAGTTCTTCATGGGATATTTTTCTC...ATTAAAGTGAGTTAGATGCTCGATGCTGTCTCTCCACTGGATGTCAAACAGACG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR GCA 90 bp | CTGTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTATTCTTAAGCTTTTTGTaGAAGGCATGGAATTCGCTG | + |
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Preference number: 4 (lower is better) Translates to: LFISIYTQVGHTHSTPSLFLSFL*KAWNSL Trigger: CAGCGAATTCCATGCCTTGCACAAAAAGCTTAAGAA...TAGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAACAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CCA 90 bp | CGTCTGTTTGACATCCAGTGGAGAGACAGCATCGAGCATCTAACTCACTTTAATTTTTTGTGCAAGGCATaGAATTCGCTGTACCGTTTC | + |
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Preference number: 4 (lower is better) Translates to: RLFDIQWRDSIEHLTHFNFLCKA*NSLYRF Trigger: GAAACGGTACAGCGAATTCCATGCCTTGCACAAAAA...ATTAAAGTGAGTTAGATGCTCGATGCTGTCTCTCCACTGGATGTCAAACAGACG 43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CCA 90 bp | TATTTTGTGACACTCCCAGTAATCCACTGTGGCCTCCTTTTCCTAACCTCTCTTAGTCAAGGAAGAGTTTaGGAAGCTCTTCATTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: YFVTLPVIHCGLLFLTSLSQGRV*EALHSP Trigger: TGGAGAATGAAGAGCTTCCCAAACTCTTCCTTGACT...AAGAGAGGTTAGGAAAAGGAGGCCACAGTGGATTACTGGGAGTGTCACAAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| CDS-3UTR GCA 90 bp | TTTAAAAGCACCATTCTAATAGAAATGTCCCTGCTCCAAAGGAAGCTGGAACTGTTCTTAAGCTTTTTGTaGAAGGCATGGAATTCGCTG | + |
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Preference number: 4 (lower is better) Translates to: FKSTILIEMSLLQRKLELFLSFL*KAWNSL Trigger: CAGCGAATTCCATGCCTTGCACAAAAAGCTTAAGAA...CAGTTCCAGCTTCCTTTGGAGCAGGGACATTTCTATTAGAATGGTGCTTTTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| CDS-3UTR CAA 90 bp | GAACCGTGCCACAAACAGTCTGTTTGCTCCTATTGTGGCCACTGTGACCCCATGCAGGCCTTGCCGCCGTaGTTCCAAGACTTTGGGGAC | + |
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Preference number: 5 (lower is better) Translates to: EPCHKQSVCSYCGHCDPMQALPP*FQDFGD Trigger: GTCCCCAAAGTCTTGGAACAACGGCGGCAAGGCCTG...CATGGGGTCACAGTGGCCACAATAGGAGCAAACAGACTGTTTGTGGCACGGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CAA 90 bp | GAACCGTGCCACAAACAGTCTGTTTGCTCCTATTGTGGCCACTGTGACCCCATGATACGTTTCCAGGCCTaGCCGCCGTTGTTCCAAGAC | + |
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Preference number: 5 (lower is better) Translates to: EPCHKQSVCSYCGHCDPMIRFQA*PPLFQD Trigger: GTCTTGGAACAACGGCGGCAAGGCCTGGAAACGTAT...CATGGGGTCACAGTGGCCACAATAGGAGCAAACAGACTGTTTGTGGCACGGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CAA 90 bp | GAACCGTGCCACAAACAGTCTGTTTGCTCCTATTGTGGCCACTGTGACCCCATGGGCAAGTGCCGTACATaGAGGAAGTCAAGGAAGAGT | + |
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Preference number: 5 (lower is better) Translates to: EPCHKQSVCSYCGHCDPMGKCRT*RKSRKS Trigger: ACTCTTCCTTGACTTCCTCAATGTACGGCACTTGCC...CATGGGGTCACAGTGGCCACAATAGGAGCAAACAGACTGTTTGTGGCACGGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS GCA 90 bp | TCTTCATTCTCCAAAATGACGGCCTGTAAATACGTTTCCAGGCCTTaGCGCCGTTGTTCCAAGACTTTGGGGACCCAGTTCCTGACGTGT | + |
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Preference number: 5 (lower is better) Translates to: SSFSKMTACKYVSRP*RRCSKTLGTQFLTC Trigger: ACACGTCAGGAACTGGGTCCCCAAAGTCTTGGAACAACGGCGGCAAGGCCTGGAAACGTATTTACAGGCCGTCATTTTGGAGAATGAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CAA 90 bp | GCTGTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTATACGTTTCCAGGCCTaGCCGCCGTTGTTCCAAGAC | + |
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Preference number: 5 (lower is better) Translates to: AVHQHLHTGRTYALYPITIRFQA*PPLFQD Trigger: GTCTTGGAACAACGGCGGCAAGGCCTGGAAACGTAT...AGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAACAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CAA 90 bp | GCTGTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTGGCTGGTGGGACAGCTaGCTTGACTCTTCAGACTCT | + |
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Preference number: 5 (lower is better) Translates to: AVHQHLHTGRTYALYPITGWWDS*LDSSDS Trigger: AGAGTCTGAAGAGTCAAGCAAGCTGTCCCACCAGCC...AGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAACAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CAA 90 bp | CTGTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTACGTTGTTCCAAGACTTaGGGGACCCAGTTCCTGACG | + |
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Preference number: 5 (lower is better) Translates to: LFISIYTQVGHTHSTPSLRCSKT*GTQFLT Trigger: CGTCAGGAACTGGGTCCCCAAAGTCTTGGAACAACG...TAGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CAA 90 bp | TATTTTGTGACACTCCCAGTAATCCACTGTGGCCTCCTTTTCCTAACCTCTCTTCGTTGTTCCAAGACTTaGGGGACCCAGTTCCTGACG | + |
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Preference number: 5 (lower is better) Translates to: YFVTLPVIHCGLLFLTSLRCSKT*GTQFLT Trigger: CGTCAGGAACTGGGTCCCCAAAGTCTTGGAACAACG...AAGAGAGGTTAGGAAAAGGAGGCCACAGTGGATTACTGGGAGTGTCACAAAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000165032.9 |
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| CDS-3UTR CAA 90 bp | CGTCTGTTTGACATCCAGTGGAGAGACAGCATCGAGCATCTAACTCACTTTAATGGCTGGTGGGACAGCTaGCTTGACTCTTCAGACTCT | + |
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Preference number: 5 (lower is better) Translates to: RLFDIQWRDSIEHLTHFNGWWDS*LDSSDS Trigger: AGAGTCTGAAGAGTCAAGCAAGCTGTCCCACCAGCC...ATTAAAGTGAGTTAGATGCTCGATGCTGTCTCTCCACTGGATGTCAAACAGACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS GCA 90 bp | TCATCGAAAGATCCACAGCTTTCTGCTTTCGGTAGAGAGGGCAAGTaGCGTACATTGAGGAAGTCAAGGAAGAGTTTGGGAAGCTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: SSKDPQLSAFGREGK*RTLRKSRKSLGSSS Trigger: TGAAGAGCTTCCCAAACTCTTCCTTGACTTCCTCAATGTACGGCACTTGCCCTCTCTACCGAAAGCAGAAAGCTGTGGATCTTTCGATGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CAA 90 bp | GTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTAAGGGCAAGTGCCGTACATaGAGGAAGTCAAGGAAGAGT | + |
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Preference number: 5 (lower is better) Translates to: VHQHLHTGRTYALYPITKGKCRT*RKSRKS Trigger: ACTCTTCCTTGACTTCCTCAATGTACGGCACTTGCC...CTTAGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CAA 90 bp | GTGAAAGATGACCGTCTGTTTGACATCCAGTGGAGAGACAGCATCGAGCATCTAAAGTCAAGGAAGAGTTaGGGAAGCTCTTCATTCTCC | + |
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Preference number: 5 (lower is better) Translates to: VKDDRLFDIQWRDSIEHLKSRKS*GSSSFS Trigger: GGAGAATGAAGAGCTTCCCAAACTCTTCCTTGACTT...TAGATGCTCGATGCTGTCTCTCCACTGGATGTCAAACAGACGGTCATCTTTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CAA 90 bp | GCTGTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTCATTTCTTAAGCTTTTaGTGCAAGGCATGGAATTCG | + |
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Preference number: 5 (lower is better) Translates to: AVHQHLHTGRTYALYPITHFLSF*CKAWNS Trigger: CGAATTCCATGCCTTGCACAAAAAGCTTAAGAAATG...AGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAACAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS-3UTR CAA 90 bp | GTTCATCAGCATTTACACACAGGTAGGACATACGCACTCTACCCCATCACTAAGCATTTCTTAAGCTTTTaGTGCAAGGCATGGAATTCG | + |
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Preference number: 5 (lower is better) Translates to: VHQHLHTGRTYALYPITKHFLSF*CKAWNS Trigger: CGAATTCCATGCCTTGCACAAAAAGCTTAAGAAATG...CTTAGTGATGGGGTAGAGTGCGTATGTCCTACCTGTGTGTAAATGCTGATGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS CCA 90 bp | CAAGACTTTGGGGACCCAGTTCCTGACGTGTTTAGAAGGGATTTCTaGAGTCTTTATACATTTCTTAAGCTTTTTGTGCAAGGCATGGAA | + |
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Preference number: 5 (lower is better) Translates to: QDFGDPVPDVFRRDF*SLYTFLKLFVQGME Trigger: TTCCATGCCTTGCACAAAAAGCTTAAGAAATGTATAAAGACTCCAGAAATCCCTTCTAAACACGTCAGGAACTGGGTCCCCAAAGTCTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS CCA 72 bp | AAGACGTATGGATCCCCAAGGAACAGCAGCACCGGCTaGTGGGACAGCTTGCTTGACTCTTCAGACTCTGTC | + |
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Preference number: 6 (lower is better) Translates to: KTYGSPRNSSTG*WDSLLDSSDSV Trigger: GACAGAGTCTGAAGAGTCAAGCAAGCTGTCCCACCAGCCGGTGCTGCTGTTCCTTGGGGATCCATACGTCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS GCA 72 bp | TCCAAAATGACGGCCTGTAAATACGTTTCCAGGCCTTaGCGCCGTTGTTCCAAGACTTTGGGGACCCAGTTC | + |
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Preference number: 6 (lower is better) Translates to: SKMTACKYVSRP*RRCSKTLGTQF Trigger: GAACTGGGTCCCCAAAGTCTTGGAACAACGGCGGCAAGGCCTGGAAACGTATTTACAGGCCGTCATTTTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS CAA 72 bp | TACGTTTCCAGGCCTTGCCGCCGTTGTTCCAAGACTTaGGGGACCCAGTTCCTGACGTGTTTAGAAGGGATT | + |
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Preference number: 6 (lower is better) Translates to: YVSRPCRRCSKT*GTQFLTCLEGI Trigger: AATCCCTTCTAAACACGTCAGGAACTGGGTCCCCAAAGTCTTGGAACAACGGCGGCAAGGCCTGGAAACGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS CAA 90 bp | GCCTGTAAATACGTTTCCAGGCCTTGCCGCCGTTGTTCCAAGACTTaGGGGACCCAGTTCCTGACGTGTTTAGAAGGGATTTCTGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: ACKYVSRPCRRCSKT*GTQFLTCLEGISGV Trigger: GACTCCAGAAATCCCTTCTAAACACGTCAGGAACTGGGTCCCCAAAGTCTTGGAACAACGGCGGCAAGGCCTGGAAACGTATTTACAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS GCA 72 bp | GATCCACAGCTTTCTGCTTTCGGTAGAGAGGGCAAGTaGCGTACATTGAGGAAGTCAAGGAAGAGTTTGGGA | + |
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Preference number: 6 (lower is better) Translates to: DPQLSAFGREGK*RTLRKSRKSLG Trigger: TCCCAAACTCTTCCTTGACTTCCTCAATGTACGGCACTTGCCCTCTCTACCGAAAGCAGAAAGCTGTGGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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| CDS CCA 72 bp | GGGGACCCAGTTCCTGACGTGTTTAGAAGGGATTTCTaGAGTCTTTATACATTTCTTAAGCTTTTTGTGCAA | + |
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Preference number: 6 (lower is better) Translates to: GDPVPDVFRRDF*SLYTFLKLFVQ Trigger: TTGCACAAAAAGCTTAAGAAATGTATAAAGACTCCAGAAATCCCTTCTAAACACGTCAGGAACTGGGTCCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025417.9 ENSMUST00000165032.9 |
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