RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SNX22 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039452

Ensembl transcript IDs: ENSMUST00000044711.7

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AACACCTGTCCTGAGTGTGTGTCCCTGTGTGGGACTCTTCTGTGCTaGTGGACGCATGCTCCTCCCCCGGGTTCCTGCCTTAGCCTGTAC +
Preference number: 1 (lower is better)
Translates to: NTCPECVSLCGTLLC*WTHAPPPGSCLSLY
Trigger: GTACAGGCTAAGGCAGGAACCCGGGGGAGGAGCATGCGTCCATCAGCACAGAAGAGTCCCACACAGGGACACACACTCAGGACAGGTGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR GCA 90 bp CATCGTGTTCTGTGTTCACCTATGTGGGGCTCTCTCCCAGGAGTGTaGCTCTTGACCCCCGCTCAACCTCTCCTCTCCTGCCTTTCCTGT +
Preference number: 1 (lower is better)
Translates to: HRVLCSPMWGSLPGV*LLTPAQPLLSCLSC
Trigger: ACAGGAAAGGCAGGAGAGGAGAGGTTGAGCGGGGGTCAAGAGGCACACTCCTGGGAGAGAGCCCCACATAGGTGAACACAGAACACGATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR GCA 90 bp CATTGTCGACTCCGGCAAGATCGAAGTGGAGAAACCCTTCGCCATTaGCAAGGAGTAGAGAGCCTGGGGGACCTCATCCCTCTAAGCAGC +
Preference number: 1 (lower is better)
Translates to: HCRLRQDRSGETLRH*QGVESLGDLIPLSS
Trigger: GCTGCTTAGAGGGATGAGGTCCCCCAGGCTCTCTACTCCTTGGCAATGGCGAAGGGTTTCTCCACTTCGATCTTGCCGGAGTCGACAATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR CCA 90 bp ACAGACAGGTCAGGGGCACTGGTTCTTCCTAACCTGGCATGGAGGTaGGGAGTGTCAAGAATAAACAGCCTGGCCAGGTGCCTCGCACAT +
Preference number: 1 (lower is better)
Translates to: TDRSGALVLPNLAWR*GVSRINSLARCLAH
Trigger: ATGTGCGAGGCACCTGGCCAGGCTGTTTATTCTTGACACTCCCCACCTCCATGCCAGGTTAGGAAGAACCAGTGCCCCTGACCTGTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR TCA 90 bp TACGGAAGGTGGAGAGCACCAAGACAGACAGCCGGGACAAGCCACTaGAGGATGTCATCATTGTCGACTCCGGCAAGATCGAAGTGGAGA +
Preference number: 1 (lower is better)
Translates to: YGRWRAPRQTAGTSH*RMSSLSTPARSKWR
Trigger: TCTCCACTTCGATCTTGCCGGAGTCGACAATGATGACATCCTTCAGTGGCTTGTCCCGGCTGTCTGTCTTGGTGCTCTCCACCTTCCGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR CCA 90 bp GCTACAGCTGTCAGTGCAAACCAGGCTCAGAGCTTTGAGTGGGGATaGGCACATCTGAGCCTCAGCCAGTTACACCTGAGTCTAGTCCAA +
Preference number: 1 (lower is better)
Translates to: ATAVSANQAQSFEWG*AHLSLSQLHLSLVQ
Trigger: TTGGACTAGACTCAGGTGTAACTGGCTGAGGCTCAGATGTGCCCATCCCCACTCAAAGCTCTGAGCCTGGTTTGCACTGACAGCTGTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR TCA 90 bp GCCTCGCACATGCCTATGGTCCTAGCTTTCAGGAGGCTGAGGCTAGGGGATCACTCCAGAAGACCTGGCTaGGTTTGTCCGGCTGCGGGG +
Preference number: 2 (lower is better)
Translates to: ASHMPMVLAFRRLRLGDHSRRPG*VCPAAG
Trigger: CCCCGCAGCCGGACAAACTCAGCCAGGTCTTCTGGA...GTGATCCCCTAGCCTCAGCCTCCTGAAAGCTAGGACCATAGGCATGTGCGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR GCA 90 bp GCCTCGCACATGCCTATGGTCCTAGCTTTCAGGAGGCTGAGGCTAGGGGATCACGTGCTGATGGACGCATaGTCCTCCCCCGGGTTCCTG +
Preference number: 2 (lower is better)
Translates to: ASHMPMVLAFRRLRLGDHVLMDA*SSPGFL
Trigger: CAGGAACCCGGGGGAGGAGCATGCGTCCATCAGCAC...GTGATCCCCTAGCCTCAGCCTCCTGAAAGCTAGGACCATAGGCATGTGCGAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR CCA 90 bp GTCCTAGGCCCCAGACAACCCATCCAGAAGACCTGGCTGAGTTTGTCCGGCTGCGTGTGTGTCCCTGTGTaGGACTCTTCTGTGCTGATG +
Preference number: 2 (lower is better)
Translates to: VLGPRQPIQKTWLSLSGCVCVPV*DSSVLM
Trigger: CATCAGCACAGAAGAGTCCCACACAGGGACACACAC...GCAGCCGGACAAACTCAGCCAGGTCTTCTGGATGGGTTGTCTGGGGCCTAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR TCA 90 bp GGTACGGAAGGTGGAGAGCACCAAGACAGACAGCCGGGACAAGCCACTGAAGGACCTTTCTCTTTATCTTaGCTTCGCCACGACCCCTGG +
Preference number: 2 (lower is better)
Translates to: GTEGGEHQDRQPGQATEGPFSLS*LRHDPW
Trigger: CCAGGGGTCGTGGCGAAGTCAAGATAAAGAGAAAGG...TCCTTCAGTGGCTTGTCCCGGCTGTCTGTCTTGGTGCTCTCCACCTTCCGTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR GCA 90 bp CCTGACCTGCTCTGCCTCTTCCTAGGAAAGAGCATCTATGGTGAGCGCTTCCCATCTCTCCCAGGAGTGTaGCTCTTGACCCCCGCTCAA +
Preference number: 2 (lower is better)
Translates to: PDLLCLFLGKSIYGERFPSLPGV*LLTPAQ
Trigger: TTGAGCGGGGGTCAAGAGGCACACTCCTGGGAGAGA...TGGGAAGCGCTCACCATAGATGCTCTTTCCTAGGAAGAGGCAGAGCAGGTCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR GCA 90 bp GGAGTGTCAAGAATAAACAGCCTGGCCAGGTGCCTCGCACATGCCTATGGTCCTCTGAGTTTGTCCGGCTaGGGGGTCCTGTTTGGTCAC +
Preference number: 2 (lower is better)
Translates to: GVSRINSLARCLAHAYGPLSLSG*GVLFGH
Trigger: GTGACCAAACAGGACCCCGCAGCCGGACAAACTCAG...AGGACCATAGGCATGTGCGAGGCACCTGGCCAGGCTGTTTATTCTTGACACTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR CAA 90 bp TCATTGTCGACTCCGGCAAGATCGAAGTGGAGAAACCCTTCGCCATaGCCAAGGAGTAGAGAGCCTGGGGGACCTCATCCCTCTAAGCAG +
Preference number: 2 (lower is better)
Translates to: SLSTPARSKWRNPSP*PRSREPGGPHPSKQ
Trigger: CTGCTTAGAGGGATGAGGTCCCCCAGGCTCTCTACTCCTTGGCAATGGCGAAGGGTTTCTCCACTTCGATCTTGCCGGAGTCGACAATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR TCA 90 bp CCTGACCTGCTCTGCCTCTTCCTAGGAAAGAGCATCTATGGTGAGCGCTTCCCATTCCATCTGATGGGGTaGCCACACCCCTCACATTCC +
Preference number: 2 (lower is better)
Translates to: PDLLCLFLGKSIYGERFPFHLMG*PHPSHS
Trigger: GGAATGTGAGGGGTGTGGTCACCCCATCAGATGGAA...TGGGAAGCGCTCACCATAGATGCTCTTTCCTAGGAAGAGGCAGAGCAGGTCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR GCA 90 bp GTTCTGTGTTCACCTATGTGGGGCTCTCTCCCAGGAGTGTGCCTCTTGACCCCCAGCTACAGCTGTCAGTaGAAACCAGGCTCAGAGCTT +
Preference number: 2 (lower is better)
Translates to: VLCSPMWGSLPGVCLLTPSYSCQ*KPGSEL
Trigger: AAGCTCTGAGCCTGGTTTGCACTGACAGCTGTAGCT...GGGGGTCAAGAGGCACACTCCTGGGAGAGAGCCCCACATAGGTGAACACAGAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR CCA 90 bp GATCAGCTGTCCAGCATCGTGTTCTGTGTTCACCTATGTGGGGCTCTCTCCCAGGCTCAGAGCTTTGAGTaGGGATGGGCACATCTGAGC +
Preference number: 2 (lower is better)
Translates to: DQLSSIVFCVHLCGALSQAQSFE*GWAHLS
Trigger: GCTCAGATGTGCCCATCCCCACTCAAAGCTCTGAGC...CTGGGAGAGAGCCCCACATAGGTGAACACAGAACACGATGCTGGACAGCTGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR TCA 90 bp GAAGGATGTCATCATTGTCGACTCCGGCAAGATCGAAGTGGAGAAACCCTTCGCCCAGGCTCAGAGCTTTaGGTGGGGATGGGCACATCT +
Preference number: 2 (lower is better)
Translates to: EGCHHCRLRQDRSGETLRPGSEL*VGMGTS
Trigger: AGATGTGCCCATCCCCACTCAAAGCTCTGAGCCTGG...GCGAAGGGTTTCTCCACTTCGATCTTGCCGGAGTCGACAATGATGACATCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR CCA 90 bp CCTGACCTGCTCTGCCTCTTCCTAGGAAAGAGCATCTATGGTGAGCGCTTCCCATGGTTCTTCCTAACCTaGCATGGAGGTGGGGAGTGT +
Preference number: 2 (lower is better)
Translates to: PDLLCLFLGKSIYGERFPWFFLT*HGGGEC
Trigger: ACACTCCCCACCTCCATGCCAGGTTAGGAAGAACCA...TGGGAAGCGCTCACCATAGATGCTCTTTCCTAGGAAGAGGCAGAGCAGGTCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR GCA 90 bp AGCTGTCCAGCATCGTGTTCTGTGTTCACCTATGTGGGGCTCTCTCCCAGGAGTCAACCTCTCCTCTCCTaGCTTTCCTGTCTAGGATGT +
Preference number: 2 (lower is better)
Translates to: SCPASCSVFTYVGLSPRSQPLLS*LSCLGC
Trigger: ACATCCTAGACAGGAAAGGCAGGAGAGGAGAGGTTG...ACTCCTGGGAGAGAGCCCCACATAGGTGAACACAGAACACGATGCTGGACAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR GCA 90 bp CTTGGTCCTGACAGCTTGGGTAGAAGACAGAAGACATCTGTCCTTGTTTGCCACGGTGAGCATGGCCAATaGAGGCAAAGACACCAATGG +
Preference number: 2 (lower is better)
Translates to: LGPDSLGRRQKTSVLVCHGEHGQ*RQRHQW
Trigger: CCATTGGTGTCTTTGCCTGCATTGGCCATGCTCACC...GTGGCAAACAAGGACAGATGTCTTCTGTCTTCTACCCAAGCTGTCAGGACCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR CCA 90 bp CTTGGTCCTGACAGCTTGGGTAGAAGACAGAAGACATCTGTCCTTGTTTGCCACATGTGGTACGGAAGGTaGAGAGCACCAAGACAGACA +
Preference number: 2 (lower is better)
Translates to: LGPDSLGRRQKTSVLVCHMWYGR*RAPRQT
Trigger: TGTCTGTCTTGGTGCTCTCCACCTTCCGTACCACAT...GTGGCAAACAAGGACAGATGTCTTCTGTCTTCTACCCAAGCTGTCAGGACCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR TCA 72 bp CCTGAGTGTGTGTCCCTGTGTGGGACTCTTCTGTGCTaGTGGACGCATGCTCCTCCCCCGGGTTCCTGCCTT +
Preference number: 3 (lower is better)
Translates to: PECVSLCGTLLC*WTHAPPPGSCL
Trigger: AAGGCAGGAACCCGGGGGAGGAGCATGCGTCCATCAGCACAGAAGAGTCCCACACAGGGACACACACTCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR GCA 72 bp CTGTGTTCACCTATGTGGGGCTCTCTCCCAGGAGTGTaGCTCTTGACCCCCGCTCAACCTCTCCTCTCCTGC +
Preference number: 3 (lower is better)
Translates to: LCSPMWGSLPGV*LLTPAQPLLSC
Trigger: GCAGGAGAGGAGAGGTTGAGCGGGGGTCAAGAGGCACACTCCTGGGAGAGAGCCCCACATAGGTGAACACAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR TCA 72 bp AAGGTTCTGTGCCACCCTGGCCCTAGTGCTTCCATCTaGTGGGGTGACCACACCCCTCACATTCCACAGGCC +
Preference number: 3 (lower is better)
Translates to: KVLCHPGPSASI*WGDHTPHIPQA
Trigger: GGCCTGTGGAATGTGAGGGGTGTGGTCACCCCATCAGATGGAAGCACTAGGGCCAGGGTGGCACAGAACCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR GCA 72 bp CAACCCATCCAGAAGACCTGGCTGAGTTTGTCCGGCTaGGGGGTCCTGTTTGGTCACTCATGGAGTCAGGGG +
Preference number: 3 (lower is better)
Translates to: QPIQKTWLSLSG*GVLFGHSWSQG
Trigger: CCCCTGACTCCATGAGTGACCAAACAGGACCCCGCAGCCGGACAAACTCAGCCAGGTCTTCTGGATGGGTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR CCA 72 bp CCTTTTCTGAAGGATTCTACACCCACGCCCCCAGCCTaGCCTCACACCCTAGGTGGTCTTGGTCCTGACAGC +
Preference number: 3 (lower is better)
Translates to: PFLKDSTPTPPA*PHTLGGLGPDS
Trigger: GCTGTCAGGACCAAGACCACCTAGGGTGTGAGGCCAGGCTGGGGGCGTGGGTGTAGAATCCTTCAGAAAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR GCA 72 bp CTCCGGCAAGATCGAAGTGGAGAAACCCTTCGCCATTaGCAAGGAGTAGAGAGCCTGGGGGACCTCATCCCT +
Preference number: 3 (lower is better)
Translates to: LRQDRSGETLRH*QGVESLGDLIP
Trigger: AGGGATGAGGTCCCCCAGGCTCTCTACTCCTTGGCAATGGCGAAGGGTTTCTCCACTTCGATCTTGCCGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR CCA 72 bp AGTTTGTCCGGCTGCGGGGTCCTGTTTGGTCACTCATaGAGTCAGGGGTGTTCGGAATCACGTCTGAGCAGC +
Preference number: 3 (lower is better)
Translates to: SLSGCGVLFGHS*SQGCSESRLSS
Trigger: GCTGCTCAGACGTGATTCCGAACACCCCTGACTCCATGAGTGACCAAACAGGACCCCGCAGCCGGACAAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR CCA 72 bp GCGCCTAAGCCACAGATACAGACAGGTCAGGGGCACTaGTTCTTCCTAACCTGGCATGGAGGTGGGGAGTGT +
Preference number: 3 (lower is better)
Translates to: APKPQIQTGQGH*FFLTWHGGGEC
Trigger: ACACTCCCCACCTCCATGCCAGGTTAGGAAGAACCAGTGCCCCTGACCTGTCTGTATCTGTGGCTTAGGCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR TCA 72 bp AGCTACAGCTGTCAGTGCAAACCAGGCTCAGAGCTTTaGGTGGGGATGGGCACATCTGAGCCTCAGCCAGTT +
Preference number: 3 (lower is better)
Translates to: SYSCQCKPGSEL*VGMGTSEPQPV
Trigger: AACTGGCTGAGGCTCAGATGTGCCCATCCCCACTCAAAGCTCTGAGCCTGGTTTGCACTGACAGCTGTAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR TCA 72 bp TGGAGAGCACCAAGACAGACAGCCGGGACAAGCCACTaGAGGATGTCATCATTGTCGACTCCGGCAAGATCG +
Preference number: 3 (lower is better)
Translates to: WRAPRQTAGTSH*RMSSLSTPARS
Trigger: CGATCTTGCCGGAGTCGACAATGATGACATCCTTCAGTGGCTTGTCCCGGCTGTCTGTCTTGGTGCTCTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR CCA 72 bp GTCAGTGCAAACCAGGCTCAGAGCTTTGAGTGGGGATaGGCACATCTGAGCCTCAGCCAGTTACACCTGAGT +
Preference number: 3 (lower is better)
Translates to: VSANQAQSFEWG*AHLSLSQLHLS
Trigger: ACTCAGGTGTAACTGGCTGAGGCTCAGATGTGCCCATCCCCACTCAAAGCTCTGAGCCTGGTTTGCACTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR CCA 72 bp ACAGCTGTCAGTGCAAACCAGGCTCAGAGCTTTGAGTaGGGATGGGCACATCTGAGCCTCAGCCAGTTACAC +
Preference number: 3 (lower is better)
Translates to: TAVSANQAQSFE*GWAHLSLSQLH
Trigger: GTGTAACTGGCTGAGGCTCAGATGTGCCCATCCCCACTCAAAGCTCTGAGCCTGGTTTGCACTGACAGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR CCA 72 bp TCAACCTCTCCTCTCCTGCCTTTCCTGTCTAGGATGTaGTACGGAAGGTGGAGAGCACCAAGACAGACAGCC +
Preference number: 3 (lower is better)
Translates to: STSPLLPFLSRM*YGRWRAPRQTA
Trigger: GGCTGTCTGTCTTGGTGCTCTCCACCTTCCGTACCACATCCTAGACAGGAAAGGCAGGAGAGGAGAGGTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR CAA 90 bp GATCAGCTGTCCAGCATCGTGTTCTGTGTTCACCTATGTGGGGCTCTCTCCCAGAGAAACCCTTCGCCATaGCCAAGGAGTAGAGAGCCT +
Preference number: 3 (lower is better)
Translates to: DQLSSIVFCVHLCGALSQRNPSP*PRSREP
Trigger: AGGCTCTCTACTCCTTGGCAATGGCGAAGGGTTTCT...CTGGGAGAGAGCCCCACATAGGTGAACACAGAACACGATGCTGGACAGCTGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR-3UTR CAA 90 bp GAAGGATGTCATCATTGTCGACTCCGGCAAGATCGAAGTGGAGAAACCCTTCGCGGGTGTGGGCTGTGTTaGGGGGTGTATATAACACCT +
Preference number: 3 (lower is better)
Translates to: EGCHHCRLRQDRSGETLRGCGLC*GVYITP
Trigger: AGGTGTTATATACACCCCCAAACACAGCCCACACCC...GCGAAGGGTTTCTCCACTTCGATCTTGCCGGAGTCGACAATGATGACATCCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR CCA 72 bp AGGATGTCATCATTGTCGACTCCGGCAAGATCGAAGTaGAGAAACCCTTCGCCATTGCCAAGGAGTAGAGAG +
Preference number: 3 (lower is better)
Translates to: RMSSLSTPARSK*RNPSPLPRSRE
Trigger: CTCTCTACTCCTTGGCAATGGCGAAGGGTTTCTCCACTTCGATCTTGCCGGAGTCGACAATGATGACATCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR GCA 90 bp GTCCTAGGCCCCAGACAACCCATCCAGAAGACCTGGCTGAGTTTGTCCGGCTGCATGACCGGCCGGTGGTaGAGCTGGGAGCTGGTGTCA +
Preference number: 4 (lower is better)
Translates to: VLGPRQPIQKTWLSLSGCMTGRW*SWELVS
Trigger: TGACACCAGCTCCCAGCTGCACCACCGGCCGGTCAT...GCAGCCGGACAAACTCAGCCAGGTCTTCTGGATGGGTTGTCTGGGGCCTAGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR CCA 90 bp GTTCTGTGTTCACCTATGTGGGGCTCTCTCCCAGGAGTGTGCCTCTTGACCCCCCCAATGACCGGCCGGTaGTGCAGCTGGGAGCTGGTG +
Preference number: 4 (lower is better)
Translates to: VLCSPMWGSLPGVCLLTPPMTGR*CSWELV
Trigger: CACCAGCTCCCAGCTGCACCACCGGCCGGTCATTGG...GGGGGTCAAGAGGCACACTCCTGGGAGAGAGCCCCACATAGGTGAACACAGAAC
62% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR CCA 90 bp CATCCAGAAGACCTGGCTGAGTTTGTCCGGCTGCGGGGTCCTGTTTGGTCACTCAGCCTCTGGCTGGGCTaGTACCGGGCTGGTGCTGAA +
Preference number: 4 (lower is better)
Translates to: HPEDLAEFVRLRGPVWSLSLWLG*YRAGAE
Trigger: TTCAGCACCAGCCCGGTACCAGCCCAGCCAGAGGCT...GAGTGACCAAACAGGACCCCGCAGCCGGACAAACTCAGCCAGGTCTTCTGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR CCA 90 bp AGCTGTCCAGCATCGTGTTCTGTGTTCACCTATGTGGGGCTCTCTCCCAGGAGTGGCCGGTGGTGCAGCTaGGAGCTGGTGTCACTAGGC +
Preference number: 4 (lower is better)
Translates to: SCPASCSVFTYVGLSPRSGRWCS*ELVSLG
Trigger: GCCTAGTGACACCAGCTCCCAGCTGCACCACCGGCC...ACTCCTGGGAGAGAGCCCCACATAGGTGAACACAGAACACGATGCTGGACAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR CAA 72 bp ACTCCGGCAAGATCGAAGTGGAGAAACCCTTCGCCATaGCCAAGGAGTAGAGAGCCTGGGGGACCTCATCCC +
Preference number: 4 (lower is better)
Translates to: TPARSKWRNPSP*PRSREPGGPHP
Trigger: GGGATGAGGTCCCCCAGGCTCTCTACTCCTTGGCAATGGCGAAGGGTTTCTCCACTTCGATCTTGCCGGAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR TCA 90 bp GGAGTGTCAAGAATAAACAGCCTGGCCAGGTGCCTCGCACATGCCTATGGTCCTGTACCGGGCTGGTGCTaGAGCCATAAAGACCCTGGA +
Preference number: 4 (lower is better)
Translates to: GVSRINSLARCLAHAYGPVPGWC*SHKDPG
Trigger: TCCAGGGTCTTTATGGCTTCAGCACCAGCCCGGTAC...AGGACCATAGGCATGTGCGAGGCACCTGGCCAGGCTGTTTATTCTTGACACTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR CCA 90 bp AGCTGTCCAGCATCGTGTTCTGTGTTCACCTATGTGGGGCTCTCTCCCAGGAGTGTCCACCACCACTTCTaGGAGAGGTTCTGGGGAAGG +
Preference number: 4 (lower is better)
Translates to: SCPASCSVFTYVGLSPRSVHHHF*ERFWGR
Trigger: CCTTCCCCAGAACCTCTCCCAGAAGTGGTGGTGGAC...ACTCCTGGGAGAGAGCCCCACATAGGTGAACACAGAACACGATGCTGGACAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR CCA 90 bp GAAGGATGTCATCATTGTCGACTCCGGCAAGATCGAAGTGGAGAAACCCTTCGCGCTGTTCCAGTCCTCTaGTCCTCCAGTTGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: EGCHHCRLRQDRSGETLRAVPVL*SSSWAG
Trigger: GCCTGCCCAACTGGAGGACCAGAGGACTGGAACAGC...GCGAAGGGTTTCTCCACTTCGATCTTGCCGGAGTCGACAATGATGACATCCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
3UTR CAA 72 bp TGGCCTCACACCCTAGGTGGTCTTGGTCCTGACAGCTaGGGTAGAAGACAGAAGACATCTGTCCTTGTTTGC +
Preference number: 4 (lower is better)
Translates to: WPHTLGGLGPDS*GRRQKTSVLVC
Trigger: GCAAACAAGGACAGATGTCTTCTGTCTTCTACCCAAGCTGTCAGGACCAAGACCACCTAGGGTGTGAGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR GCA 90 bp AGCTGTCCAGCATCGTGTTCTGTGTTCACCTATGTGGGGCTCTCTCCCAGGAGTGATTCAGGTACAGGATaGCCTGGATGTAGGTCTCTA +
Preference number: 4 (lower is better)
Translates to: SCPASCSVFTYVGLSPRSDSGTG*PGCRSL
Trigger: TAGAGACCTACATCCAGGGCATCCTGTACCTGAATC...ACTCCTGGGAGAGAGCCCCACATAGGTGAACACAGAACACGATGCTGGACAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR CCA 90 bp CTTGGTCCTGACAGCTTGGGTAGAAGACAGAAGACATCTGTCCTTGTTTGCCACCTCTGGTCCTCCAGTTaGGCAGGCGTTTTGAGGGAA +
Preference number: 4 (lower is better)
Translates to: LGPDSLGRRQKTSVLVCHLWSSS*AGVLRE
Trigger: TTCCCTCAAAACGCCTGCCCAACTGGAGGACCAGAG...GTGGCAAACAAGGACAGATGTCTTCTGTCTTCTACCCAAGCTGTCAGGACCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR TCA 90 bp CCTACCTCTGAAATTACCTCACACCTTTCTCTTTATCTTGACTTCGCCACGACCTCCTTGGGCACATCCTaGTTCAGGTACAGGATGCCC +
Preference number: 4 (lower is better)
Translates to: PTSEITSHLSLYLDFATTSLGTS*FRYRMP
Trigger: GGGCATCCTGTACCTGAATCAGGATGTGCCCAAGGA...GGTCGTGGCGAAGTCAAGATAAAGAGAAAGGTGTGAGGTAATTTCAGAGGTAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR TCA 90 bp CCTACCTCTGAAATTACCTCACACCTTTCTCTTTATCTTGACTTCGCCACGACCGTTGGGCAGGCGTTTTaGGGGAAAGTCAGGCACTTT +
Preference number: 4 (lower is better)
Translates to: PTSEITSHLSLYLDFATTVGQAF*GKVRHF
Trigger: AAAGTGCCTGACTTTCCCTCAAAACGCCTGCCCAAC...GGTCGTGGCGAAGTCAAGATAAAGAGAAAGGTGTGAGGTAATTTCAGAGGTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR CCA 90 bp CCTACCTCTGAAATTACCTCACACCTTTCTCTTTATCTTGACTTCGCCACGACCACTTGGAACACCATGTaGCCTTTCTCTGGACTCTGC +
Preference number: 4 (lower is better)
Translates to: PTSEITSHLSLYLDFATTTWNTM*PFSGLC
Trigger: GCAGAGTCCAGAGAAAGGCCACATGGTGTTCCAAGT...GGTCGTGGCGAAGTCAAGATAAAGAGAAAGGTGTGAGGTAATTTCAGAGGTAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS CCA 90 bp GCACCTCCACTTGGAACACCATGTGGCCTTTCTCTGGACTCTGCCTaGGCCCTTCGGCCTCGGGCCCCACCGAGGGAATGTGAACTTCCA +
Preference number: 5 (lower is better)
Translates to: APPLGTPCGLSLDSA*ALRPRAPPRECELP
Trigger: TGGAAGTTCACATTCCCTCGGTGGGGCCCGAGGCCGAAGGGCCCAGGCAGAGTCCAGAGAAAGGCCACATGGTGTTCCAAGTGGAGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS GCA 90 bp TGTGTAGAGCGTGGAACTCGCTGTAGCGCCGCGGCACGGTGTGTCTaGGTCCGCTGTACAGCACCTCCACTTGGAACACCATGTGGCCTT +
Preference number: 5 (lower is better)
Translates to: CVERGTRCSAAARCV*VRCTAPPLGTPCGL
Trigger: AAGGCCACATGGTGTTCCAAGTGGAGGTGCTGTACAGCGGACGCAGACACACCGTGCCGCGGCGCTACAGCGAGTTCCACGCTCTACACA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR CAA 90 bp GCCTCGCACATGCCTATGGTCCTAGCTTTCAGGAGGCTGAGGCTAGGGGATCACCCTCTGGTCCTCCAGTaGGGCAGGCGTTTTGAGGGA +
Preference number: 5 (lower is better)
Translates to: ASHMPMVLAFRRLRLGDHPLVLQ*GRRFEG
Trigger: TCCCTCAAAACGCCTGCCCAACTGGAGGACCAGAGG...GTGATCCCCTAGCCTCAGCCTCCTGAAAGCTAGGACCATAGGCATGTGCGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS CCA 90 bp CCTGGATGTAGGTCTCTAATCCCTGCCGGCGCTGTTCCAGTCCTCTaGTCCTCCAGTTGGGCAGGCGTTTTGAGGGAAAGTCAGGCACTT +
Preference number: 5 (lower is better)
Translates to: PGCRSLIPAGAVPVL*SSSWAGVLRESQAL
Trigger: AAGTGCCTGACTTTCCCTCAAAACGCCTGCCCAACTGGAGGACCAGAGGACTGGAACAGCGCCGGCAGGGATTAGAGACCTACATCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR CAA 90 bp GTCCTAGGCCCCAGACAACCCATCCAGAAGACCTGGCTGAGTTTGTCCGGCTGCCTCCAGCTGCTGGTCTaGGAGTCTGTAGGGAAATGT +
Preference number: 5 (lower is better)
Translates to: VLGPRQPIQKTWLSLSGCLQLLV*ESVGKC
Trigger: ACATTTCCCTACAGACTCCAAGACCAGCAGCTGGAG...GCAGCCGGACAAACTCAGCCAGGTCTTCTGGATGGGTTGTCTGGGGCCTAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS TCA 90 bp CCGGCGCTGTTCCAGTCCTCTGGTCCTCCAGTTGGGCAGGCGTTTTaGGGGAAAGTCAGGCACTTTGTACCGTTTCTTGATCCGCTTGTG +
Preference number: 5 (lower is better)
Translates to: PALFQSSGPPVGQAF*GKVRHFVPFLDPLV
Trigger: CACAAGCGGATCAAGAAACGGTACAAAGTGCCTGACTTTCCCTCAAAACGCCTGCCCAACTGGAGGACCAGAGGACTGGAACAGCGCCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS CCA 90 bp TCTCTAATCCCTGCCGGCGCTGTTCCAGTCCTCTGGTCCTCCAGTTaGGCAGGCGTTTTGAGGGAAAGTCAGGCACTTTGTACCGTTTCT +
Preference number: 5 (lower is better)
Translates to: SLIPAGAVPVLWSSS*AGVLRESQALCTVS
Trigger: AGAAACGGTACAAAGTGCCTGACTTTCCCTCAAAACGCCTGCCCAACTGGAGGACCAGAGGACTGGAACAGCGCCGGCAGGGATTAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR CAA 90 bp GGGGGTGTATATAACACCTGTCCTGAGTGTGTGTCCCTGTGTGGGACTCTTCTGAGTTGGGCAGGCGTTTaGAGGGAAAGTCAGGCACTT +
Preference number: 5 (lower is better)
Translates to: GGVYNTCPECVSLCGTLLSWAGV*RESQAL
Trigger: AAGTGCCTGACTTTCCCTCAAAACGCCTGCCCAACT...CAGAAGAGTCCCACACAGGGACACACACTCAGGACAGGTGTTATATACACCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR CAA 90 bp GAAGGATGTCATCATTGTCGACTCCGGCAAGATCGAAGTGGAGAAACCCTTCGCGTACAGCACCTCCACTaGGAACACCATGTGGCCTTT +
Preference number: 5 (lower is better)
Translates to: EGCHHCRLRQDRSGETLRVQHLH*EHHVAF
Trigger: AAAGGCCACATGGTGTTCCAAGTGGAGGTGCTGTAC...GCGAAGGGTTTCTCCACTTCGATCTTGCCGGAGTCGACAATGATGACATCCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS-3UTR CAA 90 bp CACCAAGACAGACAGCCGGGACAAGCCACTGAAGGATGTCATCATTGTCGACTCGGAAAGTCAGGCACTTaGTACCGTTTCTTGATCCGC +
Preference number: 5 (lower is better)
Translates to: HQDRQPGQATEGCHHCRLGKSGT*YRFLIR
Trigger: GCGGATCAAGAAACGGTACAAAGTGCCTGACTTTCC...GAGTCGACAATGATGACATCCTTCAGTGGCTTGTCCCGGCTGTCTGTCTTGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS GCA 72 bp CGTGGAACTCGCTGTAGCGCCGCGGCACGGTGTGTCTaGGTCCGCTGTACAGCACCTCCACTTGGAACACCA +
Preference number: 6 (lower is better)
Translates to: RGTRCSAAARCV*VRCTAPPLGTP
Trigger: TGGTGTTCCAAGTGGAGGTGCTGTACAGCGGACGCAGACACACCGTGCCGCGGCGCTACAGCGAGTTCCACG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS CAA 72 bp CCCTGCCGGCGCTGTTCCAGTCCTCTGGTCCTCCAGTaGGGCAGGCGTTTTGAGGGAAAGTCAGGCACTTTG +
Preference number: 6 (lower is better)
Translates to: PCRRCSSPLVLQ*GRRFEGKSGTL
Trigger: CAAAGTGCCTGACTTTCCCTCAAAACGCCTGCCCAACTGGAGGACCAGAGGACTGGAACAGCGCCGGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS TCA 72 bp AAGGGGTGCAAACGTAGGGATCCATACAGAAGCCAATaGCCGGCCGGTGGTGCAGCTGGGAGCTGGTGTCAC +
Preference number: 6 (lower is better)
Translates to: KGCKRRDPYRSQ*PAGGAAGSWCH
Trigger: GTGACACCAGCTCCCAGCTGCACCACCGGCCGGTCATTGGCTTCTGTATGGATCCCTACGTTTGCACCCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS CCA 72 bp CCTGCCGGCGCTGTTCCAGTCCTCTGGTCCTCCAGTTaGGCAGGCGTTTTGAGGGAAAGTCAGGCACTTTGT +
Preference number: 6 (lower is better)
Translates to: PAGAVPVLWSSS*AGVLRESQALC
Trigger: ACAAAGTGCCTGACTTTCCCTCAAAACGCCTGCCCAACTGGAGGACCAGAGGACTGGAACAGCGCCGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS CCA 72 bp AGGTCTCTAATCCCTGCCGGCGCTGTTCCAGTCCTCTaGTCCTCCAGTTGGGCAGGCGTTTTGAGGGAAAGT +
Preference number: 6 (lower is better)
Translates to: RSLIPAGAVPVL*SSSWAGVLRES
Trigger: ACTTTCCCTCAAAACGCCTGCCCAACTGGAGGACCAGAGGACTGGAACAGCGCCGGCAGGGATTAGAGACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS CAA 90 bp GTCTCTAATCCCTGCCGGCGCTGTTCCAGTCCTCTGGTCCTCCAGTaGGGCAGGCGTTTTGAGGGAAAGTCAGGCACTTTGTACCGTTTC +
Preference number: 6 (lower is better)
Translates to: VSNPCRRCSSPLVLQ*GRRFEGKSGTLYRF
Trigger: GAAACGGTACAAAGTGCCTGACTTTCCCTCAAAACGCCTGCCCAACTGGAGGACCAGAGGACTGGAACAGCGCCGGCAGGGATTAGAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS CAA 72 bp CAGTTGGGCAGGCGTTTTGAGGGAAAGTCAGGCACTTaGTACCGTTTCTTGATCCGCTTGTGTAGAGCGTGG +
Preference number: 6 (lower is better)
Translates to: QLGRRFEGKSGT*YRFLIRLCRAW
Trigger: CCACGCTCTACACAAGCGGATCAAGAAACGGTACAAAGTGCCTGACTTTCCCTCAAAACGCCTGCCCAACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS CAA 72 bp GGCAGGAATTCCCCCAGGGTGCTCCAGCTGCTGGTCTaGGAGTCTGTAGGGAAATGTCTAAGTCTCAAGAAT +
Preference number: 6 (lower is better)
Translates to: GRNSPRVLQLLV*ESVGKCLSLKN
Trigger: ATTCTTGAGACTTAGACATTTCCCTACAGACTCCAAGACCAGCAGCTGGAGCACCCTGGGGGAATTCCTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS CAA 90 bp GTGTCACTAGGCAGGAATTCCCCCAGGGTGCTCCAGCTGCTGGTCTaGGAGTCTGTAGGGAAATGTCTAAGTCTCAAGAATTCCAGTAAC +
Preference number: 6 (lower is better)
Translates to: VSLGRNSPRVLQLLV*ESVGKCLSLKNSSN
Trigger: GTTACTGGAATTCTTGAGACTTAGACATTTCCCTACAGACTCCAAGACCAGCAGCTGGAGCACCCTGGGGGAATTCCTGCCTAGTGACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7
CDS TCA 72 bp TTCCAGTCCTCTGGTCCTCCAGTTGGGCAGGCGTTTTaGGGGAAAGTCAGGCACTTTGTACCGTTTCTTGAT +
Preference number: 6 (lower is better)
Translates to: FQSSGPPVGQAF*GKVRHFVPFLD
Trigger: ATCAAGAAACGGTACAAAGTGCCTGACTTTCCCTCAAAACGCCTGCCCAACTGGAGGACCAGAGGACTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044711.7