Pregenerated sensors for SNX20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031662Ensembl transcript IDs: ENSMUST00000034087.9
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAAGTCCTTCCCATTCCGAGATGGCACGTAAGGTCCATAGTACTTaGAAAGTTTTGATAGCTGAGCTTGTCGGCTTAGGATTTAGAGAA | + |
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Preference number: 1 (lower is better) Translates to: ASPSHSEMARKVHST*KVLIAELVGLGFRE Trigger: TTCTCTAAATCCTAAGCCGACAAGCTCAGCTATCAAAACTTTGCAAGTACTATGGACCTTACGTGCCATCTCGGAATGGGAAGGACTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| 3UTR-3UTR CCA 90 bp | GCCAGTCTCAGCAAACTTTTTAGGCTGGCCTTGAACACATTCTGTGCGGTAGGCACTGTCTGCGCAGCCTaGATGCCAGGGCACCTGTCG | + |
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Preference number: 2 (lower is better) Translates to: ASLSKLFRLALNTFCAVGTVCAA*MPGHLS Trigger: CGACAGGTGCCCTGGCATCCAGGCTGCGCAGACAGT...GCCTACCGCACAGAATGTGTTCAAGGCCAGCCTAAAAAGTTTGCTGAGACTGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| 3UTR-3UTR GCA 90 bp | TGTTTGTGTAAATTTCTCCTCTGGCTGTCTACAAAAATAGGTGCTTCTTTTTCTACCCACGACACTGTCTaGGCAGCCTGGATGCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: CLCKFLLWLSTKIGASFSTHDTV*AAWMPG Trigger: CCCTGGCATCCAGGCTGCGCAGACAGTGTCGTGGGT...AGAAAAAGAAGCACCTATTTTTGTAGACAGCCAGAGGAGAAATTTACACAAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| 3UTR-3UTR GCA 90 bp | TTAAGTCACATCCTCAGACCTCTTTATTTGGAGCCAGTCTCAGCAAACTTTTTAAAGGTCCATAGTACTTaGAAAGTTTTGATAGCTGAG | + |
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Preference number: 2 (lower is better) Translates to: LSHILRPLYLEPVSANFLKVHST*KVLIAE Trigger: CTCAGCTATCAAAACTTTGCAAGTACTATGGACCTT...TAAAAAGTTTGCTGAGACTGGCTCCAAATAAAGAGGTCTGAGGATGTGACTTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| 3UTR GCA 72 bp | CAAAGCCCCCAGGCGATGGCGACCCACGACACTGTCTaGGCAGCCTGGATGCCAGGGCACCTGTCGGGCCGC | + |
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Preference number: 3 (lower is better) Translates to: QSPQAMATHDTV*AAWMPGHLSGR Trigger: GCGGCCCGACAGGTGCCCTGGCATCCAGGCTGCGCAGACAGTGTCGTGGGTCGCCATCGCCTGGGGGCTTTG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR CCA 90 bp | GCGACCCACGACACTGTCTGCGCAGCCTGGATGCCAGGGCACCTGTCGGGCCGCAGGCCAGGCGCACCATaGCGTCCAGCAGTGGCGCGT | + |
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Preference number: 4 (lower is better) Translates to: ATHDTVCAAWMPGHLSGRRPGAP*RPAVAR Trigger: ACGCGCCACTGCTGGACGCCATGGTGCGCCTGGCCT...GCGGCCCGACAGGTGCCCTGGCATCCAGGCTGCGCAGACAGTGTCGTGGGTCGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR CCA 90 bp | GCGACCCACGACACTGTCTGCGCAGCCTGGATGCCAGGGCACCTGTCGGGCCGCGAGCTGGGGCCATCTTaGGCTTCTTCTGGTCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: ATHDTVCAAWMPGHLSGRELGPS*ASSGPG Trigger: TCCAGGACCAGAAGAAGCCCAAGATGGCCCCAGCTC...GCGGCCCGACAGGTGCCCTGGCATCCAGGCTGCGCAGACAGTGTCGTGGGTCGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR CCA 90 bp | CTTCCAGAGGTCCCAGGAGCCCCTCAAGCCAGGCTTGTCCAAAGCCGTCCAGCATGGCGTCCCTGTGCGTaGGCCTCCGGAGCTGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: LPEVPGAPQARLVQSRPAWRPCA*ASGAGS Trigger: AGAACCAGCTCCGGAGGCCCACGCACAGGGACGCCA...TGCTGGACGGCTTTGGACAAGCCTGGCTTGAGGGGCTCCTGGGACCTCTGGAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| 3UTR CAA 72 bp | CTCTTCCAGAGGTCCCAGGAGCCCCTCAAGCCAGGCTaGTCCAAAGCCGTCCAGCAAAGCCCCCAGGCGATG | + |
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Preference number: 4 (lower is better) Translates to: LFQRSQEPLKPG*SKAVQQSPQAM Trigger: CATCGCCTGGGGGCTTTGCTGGACGGCTTTGGACAAGCCTGGCTTGAGGGGCTCCTGGGACCTCTGGAAGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR GCA 90 bp | AGAGAACCTGGCACTCAAGGGTCACAAGATGGCTCTTCCAGAGGTCCCAGGAGCAGGGTGGCGTCCCTGTaGGTGGGCCTCCGGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: REPGTQGSQDGSSRGPRSRVASL*VGLRSW Trigger: CCAGCTCCGGAGGCCCACGCACAGGGACGCCACCCT...GCTCCTGGGACCTCTGGAAGAGCCATCTTGTGACCCTTGAGTGCCAGGTTCTCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR TCA 90 bp | GGGTCACAAGATGGCTCTTCCAGAGGTCCCAGGAGCCCCTCAAGCCAGGCTTGTAGCTCCCGGTCTGGATaGCCACGACTTGGTACATCA | + |
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Preference number: 4 (lower is better) Translates to: GSQDGSSRGPRSPSSQACSSRSG*PRLGTS Trigger: TGATGTACCAAGTCGTGGTCATCCAGACCGGGAGCT...ACAAGCCTGGCTTGAGGGGCTCCTGGGACCTCTGGAAGAGCCATCTTGTGACCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR GCA 90 bp | AGAGAACCTGGCACTCAAGGGTCACAAGATGGCTCTTCCAGAGGTCCCAGGAGCCGGCTCTTCTCCTTCTaGCAGTGTTCCTGGAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: REPGTQGSQDGSSRGPRSRLFSF*QCSWSS Trigger: GGAACTCCAGGAACACTGGCAGAAGGAGAAGAGCCG...GCTCCTGGGACCTCTGGAAGAGCCATCTTGTGACCCTTGAGTGCCAGGTTCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR GCA 90 bp | GAGTCTCACAAGCACTGTGCCATTAAGTCACATCCTCAGACCTCTTTATTTGGAGCGGCGCTCGGGCAGTaGGCCGTCAGCTTCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: ESHKHCAIKSHPQTSLFGAALGQ*AVSFSC Trigger: GCAGGAGAAGCTGACGGCGCACTGCCCGAGCGCCGC...TCCAAATAAAGAGGTCTGAGGATGTGACTTAATGGCACAGTGCTTGTGAGACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR GCA 90 bp | CCATTAAGTCACATCCTCAGACCTCTTTATTTGGAGCCAGTCTCAGCAAACTTTGCGCCGCGAAGTCCTTaGCCAGCGCGTAGGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: PLSHILRPLYLEPVSANFAPRSP*PARRPG Trigger: GCCTGGCCTACGCGCTGGGCAAGGACTTCGCGGCGC...AAAGTTTGCTGAGACTGGCTCCAAATAAAGAGGTCTGAGGATGTGACTTAATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR CCA 90 bp | AAGGAGGAACTAGGTCTGTGGGTTAATGGATGCAAATACTTGCAACTGATTGGGGTGGGCCTCCGGAGCTaGTTCTCGTCCAGGCGGCTC | + |
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Preference number: 4 (lower is better) Translates to: KEELGLWVNGCKYLQLIGVGLRS*FSSRRL Trigger: GAGCCGCCTGGACGAGAACCAGCTCCGGAGGCCCAC...CCCAATCAGTTGCAAGTATTTGCATCCATTAACCCACAGACCTAGTTCCTCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR CCA 90 bp | GAGTCTCACAAGCACTGTGCCATTAAGTCACATCCTCAGACCTCTTTATTTGGACATGGCGTCCAGCAGTaGCGCGTAGTAGCGGTGGTT | + |
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Preference number: 4 (lower is better) Translates to: ESHKHCAIKSHPQTSLFGHGVQQ*RVVAVV Trigger: AACCACCGCTACTACGCGCCACTGCTGGACGCCATG...TCCAAATAAAGAGGTCTGAGGATGTGACTTAATGGCACAGTGCTTGTGAGACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR TCA 90 bp | GAGTCTCACAAGCACTGTGCCATTAAGTCACATCCTCAGACCTCTTTATTTGGACTCCTCTATGCGGGCTaGGGCGATCTCAAAGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: ESHKHCAIKSHPQTSLFGLLYAG*GDLKEQ Trigger: CTGCTCTTTGAGATCGCCTCAGCCCGCATAGAGGAG...TCCAAATAAAGAGGTCTGAGGATGTGACTTAATGGCACAGTGCTTGTGAGACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR CCA 90 bp | AGTCACATCCTCAGACCTCTTTATTTGGAGCCAGTCTCAGCAAACTTTTTAGGCTGGACATGGGAGGTCTaGGCCTGGGGGCAATACTTC | + |
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Preference number: 4 (lower is better) Translates to: SHILRPLYLEPVSANFLGWTWEV*AWGQYF Trigger: GAAGTATTGCCCCCAGGCCCAGACCTCCCATGTCCA...GCCTAAAAAGTTTGCTGAGACTGGCTCCAAATAAAGAGGTCTGAGGATGTGACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR CCA 90 bp | CACCAAAAGGAGGAACTAGGTCTGTGGGTTAATGGATGCAAATACTTGCAACTGTTCTGCCAGTGTTCCTaGAGTTCCCTTGTGGTCATG | + |
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Preference number: 4 (lower is better) Translates to: HQKEELGLWVNGCKYLQLFCQCS*SSLVVM Trigger: CATGACCACAAGGGAACTCCAGGAACACTGGCAGAA...CAGTTGCAAGTATTTGCATCCATTAACCCACAGACCTAGTTCCTCCTTTTGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| 3UTR CAA 72 bp | ACTGTGCCATTAAGTCACATCCTCAGACCTCTTTATTaGGAGCCAGTCTCAGCAAACTTTTTAGGCTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: TVPLSHILRPLY*EPVSANFLGWP Trigger: AGGCCAGCCTAAAAAGTTTGCTGAGACTGGCTCCAAATAAAGAGGTCTGAGGATGTGACTTAATGGCACAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR CCA 90 bp | AGTCACATCCTCAGACCTCTTTATTTGGAGCCAGTCTCAGCAAACTTTTTAGGCGCAATACTTCCTGTCTaGTCCTTGTTCTGCATTGGT | + |
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Preference number: 4 (lower is better) Translates to: SHILRPLYLEPVSANFLGAILPV*SLFCIG Trigger: ACCAATGCAGAACAAGGACCAGACAGGAAGTATTGC...GCCTAAAAAGTTTGCTGAGACTGGCTCCAAATAAAGAGGTCTGAGGATGTGACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR CCA 90 bp | TTAAGTCACATCCTCAGACCTCTTTATTTGGAGCCAGTCTCAGCAAACTTTTTAGTCCTTGTTCTGCATTaGTTTATGGGTCCTCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: LSHILRPLYLEPVSANFLVLVLH*FMGPLQ Trigger: CTGGAGAGGACCCATAAACCAATGCAGAACAAGGAC...TAAAAAGTTTGCTGAGACTGGCTCCAAATAAAGAGGTCTGAGGATGTGACTTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS GCA 90 bp | AGCGCGGGCACGGCGGCGCTCGGGCAGTGCGCCGTCAGCTTCTCCTaGAGCGGCAGCGCGCGGCCCAGCAGCTCGAGCGCGCGCGCGTAC | + |
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Preference number: 5 (lower is better) Translates to: SAGTAALGQCAVSFS*SGSARPSSSSARAY Trigger: GTACGCGCGCGCGCTCGAGCTGCTGGGCCGCGCGCTGCCGCTGCAGGAGAAGCTGACGGCGCACTGCCCGAGCGCCGCCGTGCCCGCGCT 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS GCA 90 bp | CAGACGAGCGCGGCGCAAAGCGCGGGCACGGCGGCGCTCGGGCAGTaGGCCGTCAGCTTCTCCTGCAGCGGCAGCGCGCGGCCCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: QTSAAQSAGTAALGQ*AVSFSCSGSARPSS Trigger: GCTGCTGGGCCGCGCGCTGCCGCTGCAGGAGAAGCTGACGGCGCACTGCCCGAGCGCCGCCGTGCCCGCGCTTTGCGCCGCGCTCGTCTG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS GCA 90 bp | GTGGTTCTCGCGCGTCCGCAGGCATCGCAGCGCGCGCTCGCCGACTaGGAAGGCCTCGGCCGGCCGCTCGAGGTCGCGCAAGCAGACGAG | + |
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Preference number: 5 (lower is better) Translates to: VVLARPQASQRALAD*EGLGRPLEVAQADE Trigger: CTCGTCTGCTTGCGCGACCTCGAGCGGCCGGCCGAGGCCTTCGCAGTCGGCGAGCGCGCGCTGCGATGCCTGCGGACGCGCGAGAACCAC 74% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS GCA 90 bp | GGAGCTGGTTCTCGTCCAGGCGGCTCTGCAGCGCCGCGAAGTCCTTaGCCAGCGCGTAGGCCAGGCGCACCATGGCGTCCAGCAGTGGCG | + |
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Preference number: 5 (lower is better) Translates to: GAGSRPGGSAAPRSP*PARRPGAPWRPAVA Trigger: CGCCACTGCTGGACGCCATGGTGCGCCTGGCCTACGCGCTGGGCAAGGACTTCGCGGCGCTGCAGAGCCGCCTGGACGAGAACCAGCTCC 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 90 bp | GCAGCGCCGCGAAGTCCTTGCCCAGCGCGTAGGCCAGGCGCACCATaGCGTCCAGCAGTGGCGCGTAGTAGCGGTGGTTCTCGCGCGTCC | + |
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Preference number: 5 (lower is better) Translates to: AAPRSPCPARRPGAP*RPAVARSSGGSRAS Trigger: GGACGCGCGAGAACCACCGCTACTACGCGCCACTGCTGGACGCCATGGTGCGCCTGGCCTACGCGCTGGGCAAGGACTTCGCGGCGCTGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 90 bp | GTCCTTGCCCAGCGCGTAGGCCAGGCGCACCATGGCGTCCAGCAGTaGCGCGTAGTAGCGGTGGTTCTCGCGCGTCCGCAGGCATCGCAG | + |
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Preference number: 5 (lower is better) Translates to: VLAQRVGQAHHGVQQ*RVVAVVLARPQASQ Trigger: CTGCGATGCCTGCGGACGCGCGAGAACCACCGCTACTACGCGCCACTGCTGGACGCCATGGTGCGCCTGGCCTACGCGCTGGGCAAGGAC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 90 bp | GTGAGCTCCTTCAGGGTGGCGTCCCTGTGCGTGGGCCTCCGGAGCTaGTTCTCGTCCAGGCGGCTCTGCAGCGCCGCGAAGTCCTTGCCC | + |
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Preference number: 5 (lower is better) Translates to: VSSFRVASLCVGLRS*FSSRRLCSAAKSLP Trigger: GGGCAAGGACTTCGCGGCGCTGCAGAGCCGCCTGGACGAGAACCAGCTCCGGAGGCCCACGCACAGGGACGCCACCCTGAAGGAGCTCAC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS GCA 90 bp | GACAGATACTCCCGCACCGTGAGCTCCTTCAGGGTGGCGTCCCTGTaGGTGGGCCTCCGGAGCTGGTTCTCGTCCAGGCGGCTCTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: DRYSRTVSSFRVASL*VGLRSWFSSRRLCS Trigger: GCTGCAGAGCCGCCTGGACGAGAACCAGCTCCGGAGGCCCACGCACAGGGACGCCACCCTGAAGGAGCTCACGGTGCGGGAGTATCTGTC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR CAA 90 bp | GCGACCCACGACACTGTCTGCGCAGCCTGGATGCCAGGGCACCTGTCGGGCCGCGGTCCTTGTTCTGCATaGGTTTATGGGTCCTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: ATHDTVCAAWMPGHLSGRGPCSA*VYGSSP Trigger: TGGAGAGGACCCATAAACCAATGCAGAACAAGGACC...GCGGCCCGACAGGTGCCCTGGCATCCAGGCTGCGCAGACAGTGTCGTGGGTCGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 90 bp | TGGAGTTCCCTTGTGGTCATGCTGGAGTTAGAGCTGGGGCCATCTTaGGCTTCTTCTGGTCCTGGACATGGGAGGTCTGGGCCTGGGGGC | + |
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Preference number: 5 (lower is better) Translates to: WSSLVVMLELELGPS*ASSGPGHGRSGPGG Trigger: GCCCCCAGGCCCAGACCTCCCATGTCCAGGACCAGAAGAAGCCCAAGATGGCCCCAGCTCTAACTCCAGCATGACCACAAGGGAACTCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS GCA 90 bp | GGAGGTCTGGGCCTGGGGGCAATACTTCCTGTCTGGTCCTTGTTCTaGATTGGTTTATGGGTCCTCTCCAGCCAGGGCTCCCAGGATGCT | + |
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Preference number: 5 (lower is better) Translates to: GGLGLGAILPVWSLF*IGLWVLSSQGSQDA Trigger: AGCATCCTGGGAGCCCTGGCTGGAGAGGACCCATAAACCAATGCAGAACAAGGACCAGACAGGAAGTATTGCCCCCAGGCCCAGACCTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 90 bp | GTCCTGGACATGGGAGGTCTGGGCCTGGGGGCAATACTTCCTGTCTaGTCCTTGTTCTGCATTGGTTTATGGGTCCTCTCCAGCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: VLDMGGLGLGAILPV*SLFCIGLWVLSSQG Trigger: GCCCTGGCTGGAGAGGACCCATAAACCAATGCAGAACAAGGACCAGACAGGAAGTATTGCCCCCAGGCCCAGACCTCCCATGTCCAGGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 90 bp | GGAGTTAGAGCTGGGGCCATCTTGGGCTTCTTCTGGTCCTGGACATaGGAGGTCTGGGCCTGGGGGCAATACTTCCTGTCTGGTCCTTGT | + |
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Preference number: 5 (lower is better) Translates to: GVRAGAILGFFWSWT*EVWAWGQYFLSGPC Trigger: ACAAGGACCAGACAGGAAGTATTGCCCCCAGGCCCAGACCTCCCATGTCCAGGACCAGAAGAAGCCCAAGATGGCCCCAGCTCTAACTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 90 bp | CATGCTGGAGTTAGAGCTGGGGCCATCTTGGGCTTCTTCTGGTCCTaGACATGGGAGGTCTGGGCCTGGGGGCAATACTTCCTGTCTGGT | + |
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Preference number: 5 (lower is better) Translates to: HAGVRAGAILGFFWS*TWEVWAWGQYFLSG Trigger: ACCAGACAGGAAGTATTGCCCCCAGGCCCAGACCTCCCATGTCCAGGACCAGAAGAAGCCCAAGATGGCCCCAGCTCTAACTCCAGCATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 90 bp | TGTGGTCATGCTGGAGTTAGAGCTGGGGCCATCTTGGGCTTCTTCTaGTCCTGGACATGGGAGGTCTGGGCCTGGGGGCAATACTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: CGHAGVRAGAILGFF*SWTWEVWAWGQYFL Trigger: CAGGAAGTATTGCCCCCAGGCCCAGACCTCCCATGTCCAGGACCAGAAGAAGCCCAAGATGGCCCCAGCTCTAACTCCAGCATGACCACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS TCA 90 bp | CTTTCCTCTCCTCTATGCGGGCTGAGGCGATCTCAAAGAGCAGCCTaGCATGTTTCCAGCGGCTCTTCTCCTTCTGCCAGTGTTCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: LSSPLCGLRRSQRAA*HVSSGSSPSASVPG Trigger: TCCAGGAACACTGGCAGAAGGAGAAGAGCCGCTGGAAACATGTCAGGCTGCTCTTTGAGATCGCCTCAGCCCGCATAGAGGAGAGGAAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 90 bp | AGCCTGACATGTTTCCAGCGGCTCTTCTCCTTCTGCCAGTGTTCCTaGAGTTCCCTTGTGGTCATGCTGGAGTTAGAGCTGGGGCCATCT | + |
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Preference number: 5 (lower is better) Translates to: SLTCFQRLFSFCQCS*SSLVVMLELELGPS Trigger: AGATGGCCCCAGCTCTAACTCCAGCATGACCACAAGGGAACTCCAGGAACACTGGCAGAAGGAGAAGAGCCGCTGGAAACATGTCAGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS GCA 90 bp | ATCTCAAAGAGCAGCCTGACATGTTTCCAGCGGCTCTTCTCCTTCTaGCAGTGTTCCTGGAGTTCCCTTGTGGTCATGCTGGAGTTAGAG | + |
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Preference number: 5 (lower is better) Translates to: ISKSSLTCFQRLFSF*QCSWSSLVVMLELE Trigger: CTCTAACTCCAGCATGACCACAAGGGAACTCCAGGAACACTGGCAGAAGGAGAAGAGCCGCTGGAAACATGTCAGGCTGCTCTTTGAGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR CAA 90 bp | TGTTTGTGTAAATTTCTCCTCTGGCTGTCTACAAAAATAGGTGCTTCTTTTTCTCTTCCTGTCTGGTCCTaGTTCTGCATTGGTTTATGG | + |
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Preference number: 5 (lower is better) Translates to: CLCKFLLWLSTKIGASFSLPVWS*FCIGLW Trigger: CCATAAACCAATGCAGAACAAGGACCAGACAGGAAG...AGAAAAAGAAGCACCTATTTTTGTAGACAGCCAGAGGAGAAATTTACACAAACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS-3UTR CAA 90 bp | TGTTTGTGTAAATTTCTCCTCTGGCTGTCTACAAAAATAGGTGCTTCTTTTTCTTGGTACATCACAAACTaGGAGACTTTCCTCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: CLCKFLLWLSTKIGASFSWYITN*ETFLSS Trigger: AGAGGAGAGGAAAGTCTCCAAGTTTGTGATGTACCA...AGAAAAAGAAGCACCTATTTTTGTAGACAGCCAGAGGAGAAATTTACACAAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS GCA 72 bp | ACGGCGGCGCTCGGGCAGTGCGCCGTCAGCTTCTCCTaGAGCGGCAGCGCGCGGCCCAGCAGCTCGAGCGCG | + |
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Preference number: 6 (lower is better) Translates to: TAALGQCAVSFS*SGSARPSSSSA Trigger: CGCGCTCGAGCTGCTGGGCCGCGCGCTGCCGCTGCAGGAGAAGCTGACGGCGCACTGCCCGAGCGCCGCCGT 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS GCA 72 bp | GCGCGTCCGCAGGCATCGCAGCGCGCGCTCGCCGACTaGGAAGGCCTCGGCCGGCCGCTCGAGGTCGCGCAA | + |
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Preference number: 6 (lower is better) Translates to: ARPQASQRALAD*EGLGRPLEVAQ Trigger: TTGCGCGACCTCGAGCGGCCGGCCGAGGCCTTCGCAGTCGGCGAGCGCGCGCTGCGATGCCTGCGGACGCGC 78% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS TCA 72 bp | GCAGGCAGCCGAAGGCCTCGCGCAGCTCGGGCCGCGTaGGGAAGTCGAGGAACTCGCGCGAGCGGCGCACGG | + |
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Preference number: 6 (lower is better) Translates to: AGSRRPRAARAA*GSRGTRASGAR Trigger: CCGTGCGCCGCTCGCGCGAGTTCCTCGACTTCCTCACGCGGCCCGAGCTGCGCGAGGCCTTCGGCTGCCTGC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS GCA 72 bp | TCCCGCACCGTGAGCTCCTTCAGGGTGGCGTCCCTGTaGGTGGGCCTCCGGAGCTGGTTCTCGTCCAGGCGG | + |
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Preference number: 6 (lower is better) Translates to: SRTVSSFRVASL*VGLRSWFSSRR Trigger: CCGCCTGGACGAGAACCAGCTCCGGAGGCCCACGCACAGGGACGCCACCCTGAAGGAGCTCACGGTGCGGGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 72 bp | CAGCGCGTAGGCCAGGCGCACCATGGCGTCCAGCAGTaGCGCGTAGTAGCGGTGGTTCTCGCGCGTCCGCAG | + |
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Preference number: 6 (lower is better) Translates to: QRVGQAHHGVQQ*RVVAVVLARPQ Trigger: CTGCGGACGCGCGAGAACCACCGCTACTACGCGCCACTGCTGGACGCCATGGTGCGCCTGGCCTACGCGCTG 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 72 bp | TTCAGGGTGGCGTCCCTGTGCGTGGGCCTCCGGAGCTaGTTCTCGTCCAGGCGGCTCTGCAGCGCCGCGAAG | + |
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Preference number: 6 (lower is better) Translates to: FRVASLCVGLRS*FSSRRLCSAAK Trigger: CTTCGCGGCGCTGCAGAGCCGCCTGGACGAGAACCAGCTCCGGAGGCCCACGCACAGGGACGCCACCCTGAA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 72 bp | CGAAGTCCTTGCCCAGCGCGTAGGCCAGGCGCACCATaGCGTCCAGCAGTGGCGCGTAGTAGCGGTGGTTCT | + |
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Preference number: 6 (lower is better) Translates to: RSPCPARRPGAP*RPAVARSSGGS Trigger: AGAACCACCGCTACTACGCGCCACTGCTGGACGCCATGGTGCGCCTGGCCTACGCGCTGGGCAAGGACTTCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 72 bp | GCTGGAGTTAGAGCTGGGGCCATCTTGGGCTTCTTCTaGTCCTGGACATGGGAGGTCTGGGCCTGGGGGCAA | + |
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Preference number: 6 (lower is better) Translates to: AGVRAGAILGFF*SWTWEVWAWGQ Trigger: TTGCCCCCAGGCCCAGACCTCCCATGTCCAGGACCAGAAGAAGCCCAAGATGGCCCCAGCTCTAACTCCAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CAA 90 bp | CTGGAGTTCCCTTGTGGTCATGCTGGAGTTAGAGCTGGGGCCATCTaGGGCTTCTTCTGGTCCTGGACATGGGAGGTCTGGGCCTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: LEFPCGHAGVRAGAI*GFFWSWTWEVWAWG Trigger: CCCCCAGGCCCAGACCTCCCATGTCCAGGACCAGAAGAAGCCCAAGATGGCCCCAGCTCTAACTCCAGCATGACCACAAGGGAACTCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 72 bp | GTTAGAGCTGGGGCCATCTTGGGCTTCTTCTGGTCCTaGACATGGGAGGTCTGGGCCTGGGGGCAATACTTC | + |
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Preference number: 6 (lower is better) Translates to: VRAGAILGFFWS*TWEVWAWGQYF Trigger: GAAGTATTGCCCCCAGGCCCAGACCTCCCATGTCCAGGACCAGAAGAAGCCCAAGATGGCCCCAGCTCTAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CAA 90 bp | GTCTGGGCCTGGGGGCAATACTTCCTGTCTGGTCCTTGTTCTGCATaGGTTTATGGGTCCTCTCCAGCCAGGGCTCCCAGGATGCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: VWAWGQYFLSGPCSA*VYGSSPARAPRMLW Trigger: CCAGAGCATCCTGGGAGCCCTGGCTGGAGAGGACCCATAAACCAATGCAGAACAAGGACCAGACAGGAAGTATTGCCCCCAGGCCCAGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CAA 90 bp | GACATGGGAGGTCTGGGCCTGGGGGCAATACTTCCTGTCTGGTCCTaGTTCTGCATTGGTTTATGGGTCCTCTCCAGCCAGGGCTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: DMGGLGLGAILPVWS*FCIGLWVLSSQGSQ Trigger: CTGGGAGCCCTGGCTGGAGAGGACCCATAAACCAATGCAGAACAAGGACCAGACAGGAAGTATTGCCCCCAGGCCCAGACCTCCCATGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS GCA 72 bp | GGCCTGGGGGCAATACTTCCTGTCTGGTCCTTGTTCTaGATTGGTTTATGGGTCCTCTCCAGCCAGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: GLGAILPVWSLF*IGLWVLSSQGS Trigger: GGAGCCCTGGCTGGAGAGGACCCATAAACCAATGCAGAACAAGGACCAGACAGGAAGTATTGCCCCCAGGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 72 bp | GGCTTCTTCTGGTCCTGGACATGGGAGGTCTGGGCCTaGGGGCAATACTTCCTGTCTGGTCCTTGTTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: GFFWSWTWEVWA*GQYFLSGPCSA Trigger: TGCAGAACAAGGACCAGACAGGAAGTATTGCCCCCAGGCCCAGACCTCCCATGTCCAGGACCAGAAGAAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS TCA 72 bp | CCTCTATGCGGGCTGAGGCGATCTCAAAGAGCAGCCTaGCATGTTTCCAGCGGCTCTTCTCCTTCTGCCAGT | + |
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Preference number: 6 (lower is better) Translates to: PLCGLRRSQRAA*HVSSGSSPSAS Trigger: ACTGGCAGAAGGAGAAGAGCCGCTGGAAACATGTCAGGCTGCTCTTTGAGATCGCCTCAGCCCGCATAGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 72 bp | ATCTTGGGCTTCTTCTGGTCCTGGACATGGGAGGTCTaGGCCTGGGGGCAATACTTCCTGTCTGGTCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: ILGFFWSWTWEV*AWGQYFLSGPC Trigger: ACAAGGACCAGACAGGAAGTATTGCCCCCAGGCCCAGACCTCCCATGTCCAGGACCAGAAGAAGCCCAAGAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CAA 72 bp | GGTCTGGGCCTGGGGGCAATACTTCCTGTCTGGTCCTaGTTCTGCATTGGTTTATGGGTCCTCTCCAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: GLGLGAILPVWS*FCIGLWVLSSQ Trigger: CTGGCTGGAGAGGACCCATAAACCAATGCAGAACAAGGACCAGACAGGAAGTATTGCCCCCAGGCCCAGACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS TCA 72 bp | CCACCGCCTTGTCGCTGTCGAAGCTCCCGGTCTGGATaGCCACGACTTGGTACATCACAAACTTGGAGACTT | + |
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Preference number: 6 (lower is better) Translates to: PPPCRCRSSRSG*PRLGTSQTWRL Trigger: AAGTCTCCAAGTTTGTGATGTACCAAGTCGTGGTCATCCAGACCGGGAGCTTCGACAGCGACAAGGCGGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS GCA 72 bp | AGCAGCCTGACATGTTTCCAGCGGCTCTTCTCCTTCTaGCAGTGTTCCTGGAGTTCCCTTGTGGTCATGCTG | + |
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Preference number: 6 (lower is better) Translates to: SSLTCFQRLFSF*QCSWSSLVVML Trigger: CAGCATGACCACAAGGGAACTCCAGGAACACTGGCAGAAGGAGAAGAGCCGCTGGAAACATGTCAGGCTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 72 bp | ATGGGAGGTCTGGGCCTGGGGGCAATACTTCCTGTCTaGTCCTTGTTCTGCATTGGTTTATGGGTCCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: MGGLGLGAILPV*SLFCIGLWVLS Trigger: GGAGAGGACCCATAAACCAATGCAGAACAAGGACCAGACAGGAAGTATTGCCCCCAGGCCCAGACCTCCCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CAA 72 bp | CCGGTCTGGATGACCACGACTTGGTACATCACAAACTaGGAGACTTTCCTCTCCTCTATGCGGGCTGAGGCG | + |
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Preference number: 6 (lower is better) Translates to: PVWMTTTWYITN*ETFLSSMRAEA Trigger: CGCCTCAGCCCGCATAGAGGAGAGGAAAGTCTCCAAGTTTGTGATGTACCAAGTCGTGGTCATCCAGACCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 72 bp | ATACTTCCTGTCTGGTCCTTGTTCTGCATTGGTTTATaGGTCCTCTCCAGCCAGGGCTCCCAGGATGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: ILPVWSLFCIGL*VLSSQGSQDAL Trigger: CAGAGCATCCTGGGAGCCCTGGCTGGAGAGGACCCATAAACCAATGCAGAACAAGGACCAGACAGGAAGTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CCA 72 bp | TGTTTCCAGCGGCTCTTCTCCTTCTGCCAGTGTTCCTaGAGTTCCCTTGTGGTCATGCTGGAGTTAGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: CFQRLFSFCQCS*SSLVVMLELEL Trigger: CAGCTCTAACTCCAGCATGACCACAAGGGAACTCCAGGAACACTGGCAGAAGGAGAAGAGCCGCTGGAAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS CAA 72 bp | GTCGCTGTCGAAGCTCCCGGTCTGGATGACCACGACTaGGTACATCACAAACTTGGAGACTTTCCTCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: VAVEAPGLDDHD*VHHKLGDFPLL Trigger: GAGGAGAGGAAAGTCTCCAAGTTTGTGATGTACCAAGTCGTGGTCATCCAGACCGGGAGCTTCGACAGCGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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| CDS TCA 72 bp | CACAAACTTGGAGACTTTCCTCTCCTCTATGCGGGCTaGGGCGATCTCAAAGAGCAGCCTGACATGTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: HKLGDFPLLYAG*GDLKEQPDMFP Trigger: TGGAAACATGTCAGGCTGCTCTTTGAGATCGCCTCAGCCCGCATAGAGGAGAGGAAAGTCTCCAAGTTTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034087.9 |
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