Pregenerated sensors for SNX14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032422Ensembl transcript IDs: ENSMUST00000126405.3, ENSMUST00000165315.9, ENSMUST00000173011.9, ENSMUST00000173039.9, ENSMUST00000174806.9, ENSMUST00000239462.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTACATCTGGAAGTATCTTATCTAGAAACTGTGTCTCCCCACCGTTaGGGGAGAGAAAGTCAGCCAGAAGCTGGCTGTTACTCAGCTCCG | + |
|
Preference number: 1 (lower is better) Translates to: LHLEVSYLETVSPHR*GRESQPEAGCYSAP Trigger: CGGAGCTGAGTAACAGCCAGCTTCTGGCTGACTTTCTCTCCCCCAACGGTGGGGAGACACAGTTTCTAGATAAGATACTTCCAGATGTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR GCA 90 bp | TGGCAGAACATGGGGGTAAACACGTTCTCCAACAGGGAAAGGACGTaGTCATATGCTTCAAAAAGACACCTCATAGTTTGCAGCTTCACA | + |
|
Preference number: 1 (lower is better) Translates to: WQNMGVNTFSNRERT*SYASKRHLIVCSFT Trigger: TGTGAAGCTGCAAACTATGAGGTGTCTTTTTGAAGCATATGAGCACGTCCTTTCCCTGTTGGAGAACGTGTTTACCCCCATGTTCTGCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CCA 90 bp | TCTAGGTTCTGCAAATTTCTGCAGGAATGGAACCAAAGGGGAAGCTaGTTCAGTTGCTTTTTCAGGAGGGCTGTCGTCTATGAAGATGAT | + |
|
Preference number: 1 (lower is better) Translates to: SRFCKFLQEWNQRGS*FSCFFRRAVVYEDD Trigger: ATCATCTTCATAGACGACAGCCCTCCTGAAAAAGCAACTGAACCAGCTTCCCCTTTGGTTCCATTCCTGCAGAAATTTGCAGAACCTAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CCA 90 bp | AAGCTTCTTGTTGTTTTCGGAAGTGGGGCTGAGAATCGTCAGTTCTaGCCGACTCGGTTTAGGTTTGGGAGATTCGCAAGAATTAATGAA | + |
|
Preference number: 1 (lower is better) Translates to: KLLVVFGSGAENRQF*PTRFRFGRFARINE Trigger: TTCATTAATTCTTGCGAATCTCCCAAACCTAAACCGAGTCGGCCAGAACTGACGATTCTCAGCCCCACTTCCGAAAACAACAAGAAGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR GCA 90 bp | ATTCTATCATTAAATTCCTCGACTGTCAGACAGAACTGCAGGACGTaGACGGCCCCTTCTTGTTTCAGGAAGTTCATAAAGCGGAACAAA | + |
|
Preference number: 1 (lower is better) Translates to: ILSLNSSTVRQNCRT*TAPSCFRKFIKRNK Trigger: TTTGTTCCGCTTTATGAACTTCCTGAAACAAGAAGGGGCCGTGCACGTCCTGCAGTTCTGTCTGACAGTCGAGGAATTTAATGATAGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR GCA 90 bp | CATGGGGGTAAACACGTTCTCCAACAGGGAAAGGACGTGCTCATATaGTTCAAAAAGACACCTCATAGTTTGCAGCTTCACAACATCTAT | + |
|
Preference number: 1 (lower is better) Translates to: HGGKHVLQQGKDVLI*FKKTPHSLQLHNIY Trigger: ATAGATGTTGTGAAGCTGCAAACTATGAGGTGTCTTTTTGAAGCATATGAGCACGTCCTTTCCCTGTTGGAGAACGTGTTTACCCCCATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR TCA 90 bp | CATCTATGTATGGGCCTTCAGCAATTCTTTGAATCTCTTCGACAATaGAGGGATCAAAGCGAATTTTGTCAATGCTTTCATCCAAGCAGT | + |
|
Preference number: 1 (lower is better) Translates to: HLCMGLQQFFESLRQ*RDQSEFCQCFHPSS Trigger: ACTGCTTGGATGAAAGCATTGACAAAATTCGCTTTGATCCCTTCATTGTCGAAGAGATTCAAAGAATTGCTGAAGGCCCATACATAGATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CAA 90 bp | TTCCTCGACTGTCAGACAGAACTGCAGGACGTGCACGGCCCCTTCTaGTTTCAGGAAGTTCATAAAGCGGAACAAAAGGTCCTGCTGTTC | + |
|
Preference number: 2 (lower is better) Translates to: FLDCQTELQDVHGPF*FQEVHKAEQKVLLF Trigger: GAACAGCAGGACCTTTTGTTCCGCTTTATGAACTTCCTGAAACAAGAAGGGGCCGTGCACGTCCTGCAGTTCTGTCTGACAGTCGAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CAA 90 bp | TTTACATCTGGAAGTATCTTATCTAGAAACTGTGTCTCCCCACCGTaGGGGGAGAGAAAGTCAGCCAGAAGCTGGCTGTTACTCAGCTCC | + |
|
Preference number: 2 (lower is better) Translates to: FTSGSILSRNCVSPP*GERKSARSWLLLSS Trigger: GGAGCTGAGTAACAGCCAGCTTCTGGCTGACTTTCTCTCCCCCAACGGTGGGGAGACACAGTTTCTAGATAAGATACTTCCAGATGTAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR GCA 90 bp | TACTCAGCTCCGGGTGCTGCACAAGTTTCTGCAGATACTCCTGGAACTCCTCTCGGACCTGCAGTCTGTTaGTTTAGGAGGCAAAATATA | + |
|
Preference number: 2 (lower is better) Translates to: YSAPGAAQVSADTPGTPLGPAVC*FRRQNI Trigger: TATATTTTGCCTCCTAAAGCAACAGACTGCAGGTCC...GAGAGGAGTTCCAGGAGTATCTGCAGAAACTTGTGCAGCACCCGGAGCTGAGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR CCA 90 bp | TCTATAGACAGACCAATGCTCAGGCTCGTGTCCAACTGCTCGTCTGTCGTTTCTAAATTTCTGCAGGAATaGAACCAAAGGGGAAGCTGG | + |
|
Preference number: 2 (lower is better) Translates to: SIDRPMLRLVSNCSSVVSKFLQE*NQRGSW Trigger: CCAGCTTCCCCTTTGGTTCCATTCCTGCAGAAATTT...AGAAACGACAGACGAGCAGTTGGACACGAGCCTGAGCATTGGTCTGTCTATAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR TCA 90 bp | TGGGACTTGAAAAACTACTCGCCCTACATACATCAGGTAATCATAGACTCCGTCCTTTTGGATGGAAGCTaGGCATCAGGAAATGTGCCA | + |
|
Preference number: 2 (lower is better) Translates to: WDLKNYSPYIHQVIIDSVLLDGS*ASGNVP Trigger: TGGCACATTTCCTGATGCTCAGCTTCCATCCAAAAG...GACGGAGTCTATGATTACCTGATGTATGTAGGGCGAGTAGTTTTTCAAGTCCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR GCA 90 bp | CCAACTGCTCGTCTGTCGTTTCTTTCAACATCGATACAAAACACAGGAATTCTCGGAAGCTGGTTCAGTTaGTTTTTCAGGAGGGCTGTC | + |
|
Preference number: 2 (lower is better) Translates to: PTARLSFLSTSIQNTGILGSWFS*FFRRAV Trigger: GACAGCCCTCCTGAAAAAGCAACTGAACCAGCTTCC...GAGAATTCCTGTGTTTTGTATCGATGTTGAAAGAAACGACAGACGAGCAGTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR TCA 90 bp | TGGGACTTGAAAAACTACTCGCCCTACATACATCAGGTAATCATAGACTCCGTCTGCTACCTATTCTGCTaGTTCCAAACGATTCTCCTC | + |
|
Preference number: 2 (lower is better) Translates to: WDLKNYSPYIHQVIIDSVCYLFC*FQTILL Trigger: GAGGAGAATCGTTTGGAATCAGCAGAATAGGTAGCA...GACGGAGTCTATGATTACCTGATGTATGTAGGGCGAGTAGTTTTTCAAGTCCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CAA 90 bp | CAGGGAAAGGACGTGCTCATATGCTTCAAAAAGACACCTCATAGTTaGCAGCTTCACAACATCTATGTATGGGCCTTCAGCAATTCTTTG | + |
|
Preference number: 2 (lower is better) Translates to: QGKDVLICFKKTPHS*QLHNIYVWAFSNSL Trigger: CAAAGAATTGCTGAAGGCCCATACATAGATGTTGTGAAGCTGCAAACTATGAGGTGTCTTTTTGAAGCATATGAGCACGTCCTTTCCCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR GCA 90 bp | TTTACATCTGGAAGTATCTTATCTAGAAACTGTGTCTCCCCACCGTTGGGGGAGAAGGACGTGCTCATATaGTTCAAAAAGACACCTCAT | + |
|
Preference number: 2 (lower is better) Translates to: FTSGSILSRNCVSPPLGEKDVLI*FKKTPH Trigger: ATGAGGTGTCTTTTTGAAGCATATGAGCACGTCCTT...CTCCCCCAACGGTGGGGAGACACAGTTTCTAGATAAGATACTTCCAGATGTAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR CCA 90 bp | CCAACTGCTCGTCTGTCGTTTCTTTCAACATCGATACAAAACACAGGAATTCTCAACCAAAGGGGAAGCTaGTTCAGTTGCTTTTTCAGG | + |
|
Preference number: 2 (lower is better) Translates to: PTARLSFLSTSIQNTGILNQRGS*FSCFFR Trigger: CCTGAAAAAGCAACTGAACCAGCTTCCCCTTTGGTT...GAGAATTCCTGTGTTTTGTATCGATGTTGAAAGAAACGACAGACGAGCAGTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR GCA 90 bp | TCGTGTCCAACTGCTCGTCTGTCGTTTCTTTCAACATCGATACAAAACACAGGAAACAGGGAAAGGACGTaGTCATATGCTTCAAAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: SCPTARLSFLSTSIQNTGNRERT*SYASKR Trigger: TCTTTTTGAAGCATATGAGCACGTCCTTTCCCTGTT...TCCTGTGTTTTGTATCGATGTTGAAAGAAACGACAGACGAGCAGTTGGACACGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR TCA 90 bp | ATCTCTTCGACAATGAAGGGATCAAAGCGAATTTTGTCAATGCTTTCATCCAAGGGTCCTGCTGTTCTCTaGTTTGTTTCAGCTCTAACT | + |
|
Preference number: 2 (lower is better) Translates to: ISSTMKGSKRILSMLSSKGPAVL*FVSALT Trigger: AGTTAGAGCTGAAACAAATCAGAGAACAGCAGGACC...CTTGGATGAAAGCATTGACAAAATTCGCTTTGATCCCTTCATTGTCGAAGAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR GCA 90 bp | AGGTTCAGTATTTTCACAAAATATAGCATCTCTGAGAAGGGTGATGAGGGAGACGAGCATCAGGAAATGTaGCATGAAATTCTGTTAGTT | + |
|
Preference number: 2 (lower is better) Translates to: RFSIFTKYSISEKGDEGDEHQEM*HEILLV Trigger: AACTAACAGAATTTCATGGCACATTTCCTGATGCTC...GTCTCCCTCATCACCCTTCTCAGAGATGCTATATTTTGTGAAAATACTGAACCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR GCA 72 bp | AAGTCAGCCAGAAGCTGGCTGTTACTCAGCTCCGGGTaGTGCACAAGTTTCTGCAGATACTCCTGGAACTCC | + |
|
Preference number: 3 (lower is better) Translates to: KSARSWLLLSSG*CTSFCRYSWNS Trigger: GGAGTTCCAGGAGTATCTGCAGAAACTTGTGCAGCACCCGGAGCTGAGTAACAGCCAGCTTCTGGCTGACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR GCA 72 bp | TGGCTGTTACTCAGCTCCGGGTGCTGCACAAGTTTCTaGAGATACTCCTGGAACTCCTCTCTCTTCGACTTC | + |
|
Preference number: 3 (lower is better) Translates to: WLLLSSGCCTSF*RYSWNSSLFDF Trigger: GAAGTCGAAGAGAGAGGAGTTCCAGGAGTATCTGCAGAAACTTGTGCAGCACCCGGAGCTGAGTAACAGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CCA 72 bp | GTTGTTTTCGGAAGTGGGGCTGAGAATCGTCAGTTCTaGCCGACTCGGTTTAGGTTTGGGAGATTCGCAAGA | + |
|
Preference number: 3 (lower is better) Translates to: VVFGSGAENRQF*PTRFRFGRFAR Trigger: TCTTGCGAATCTCCCAAACCTAAACCGAGTCGGCCAGAACTGACGATTCTCAGCCCCACTTCCGAAAACAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CCA 72 bp | GAAGTATCTTATCTAGAAACTGTGTCTCCCCACCGTTaGGGGAGAGAAAGTCAGCCAGAAGCTGGCTGTTAC | + |
|
Preference number: 3 (lower is better) Translates to: EVSYLETVSPHR*GRESQPEAGCY Trigger: GTAACAGCCAGCTTCTGGCTGACTTTCTCTCCCCCAACGGTGGGGAGACACAGTTTCTAGATAAGATACTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR CAA 90 bp | TTTACATCTGGAAGTATCTTATCTAGAAACTGTGTCTCCCCACCGTTGGGGGAGGGGAAGCTGGTTCAGTaGCTTTTTCAGGAGGGCTGT | + |
|
Preference number: 3 (lower is better) Translates to: FTSGSILSRNCVSPPLGEGKLVQ*LFQEGC Trigger: ACAGCCCTCCTGAAAAAGCAACTGAACCAGCTTCCC...CTCCCCCAACGGTGGGGAGACACAGTTTCTAGATAAGATACTTCCAGATGTAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR GCA 72 bp | CTGCAGGAATGGAACCAAAGGGGAAGCTGGTTCAGTTaGTTTTTCAGGAGGGCTGTCGTCTATGAAGATGAT | + |
|
Preference number: 3 (lower is better) Translates to: LQEWNQRGSWFS*FFRRAVVYEDD Trigger: ATCATCTTCATAGACGACAGCCCTCCTGAAAAAGCAACTGAACCAGCTTCCCCTTTGGTTCCATTCCTGCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR GCA 72 bp | TTAAATTCCTCGACTGTCAGACAGAACTGCAGGACGTaGACGGCCCCTTCTTGTTTCAGGAAGTTCATAAAG | + |
|
Preference number: 3 (lower is better) Translates to: LNSSTVRQNCRT*TAPSCFRKFIK Trigger: CTTTATGAACTTCCTGAAACAAGAAGGGGCCGTGCACGTCCTGCAGTTCTGTCTGACAGTCGAGGAATTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR GCA 72 bp | ATTCTATCATTAAATTCCTCGACTGTCAGACAGAACTaGAGGACGTGCACGGCCCCTTCTTGTTTCAGGAAG | + |
|
Preference number: 3 (lower is better) Translates to: ILSLNSSTVRQN*RTCTAPSCFRK Trigger: CTTCCTGAAACAAGAAGGGGCCGTGCACGTCCTGCAGTTCTGTCTGACAGTCGAGGAATTTAATGATAGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR GCA 72 bp | GAATTGCGTGTGGGCGATTCTGCACCTCTTAAAAGTTaGCTAAAATACTCATCACTGTGGCAGAACATGGGG | + |
|
Preference number: 3 (lower is better) Translates to: ELRVGDSAPLKS*LKYSSLWQNMG Trigger: CCCCATGTTCTGCCACAGTGATGAGTATTTTAGGCAACTTTTAAGAGGTGCAGAATCGCCCACACGCAATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CCA 72 bp | TGCAAATTTCTGCAGGAATGGAACCAAAGGGGAAGCTaGTTCAGTTGCTTTTTCAGGAGGGCTGTCGTCTAT | + |
|
Preference number: 3 (lower is better) Translates to: CKFLQEWNQRGS*FSCFFRRAVVY Trigger: ATAGACGACAGCCCTCCTGAAAAAGCAACTGAACCAGCTTCCCCTTTGGTTCCATTCCTGCAGAAATTTGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR GCA 72 bp | ATGGGGGTAAACACGTTCTCCAACAGGGAAAGGACGTaGTCATATGCTTCAAAAAGACACCTCATAGTTTGC | + |
|
Preference number: 3 (lower is better) Translates to: MGVNTFSNRERT*SYASKRHLIVC Trigger: GCAAACTATGAGGTGTCTTTTTGAAGCATATGAGCACGTCCTTTCCCTGTTGGAGAACGTGTTTACCCCCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR CAA 90 bp | TGGGACTTGAAAAACTACTCGCCCTACATACATCAGGTAATCATAGACTCCGTCTCGTTGAAAAGCTTCTaGTTGTTTTCGGAAGTGGGG | + |
|
Preference number: 3 (lower is better) Translates to: WDLKNYSPYIHQVIIDSVSLKSF*LFSEVG Trigger: CCCCACTTCCGAAAACAACAAGAAGCTTTTCAACGA...GACGGAGTCTATGATTACCTGATGTATGTAGGGCGAGTAGTTTTTCAAGTCCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR GCA 72 bp | AAACACGTTCTCCAACAGGGAAAGGACGTGCTCATATaGTTCAAAAAGACACCTCATAGTTTGCAGCTTCAC | + |
|
Preference number: 3 (lower is better) Translates to: KHVLQQGKDVLI*FKKTPHSLQLH Trigger: GTGAAGCTGCAAACTATGAGGTGTCTTTTTGAAGCATATGAGCACGTCCTTTCCCTGTTGGAGAACGTGTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR CAA 90 bp | AGGTTCAGTATTTTCACAAAATATAGCATCTCTGAGAAGGGTGATGAGGGAGACGTGCACGGCCCCTTCTaGTTTCAGGAAGTTCATAAA | + |
|
Preference number: 3 (lower is better) Translates to: RFSIFTKYSISEKGDEGDVHGPF*FQEVHK Trigger: TTTATGAACTTCCTGAAACAAGAAGGGGCCGTGCAC...GTCTCCCTCATCACCCTTCTCAGAGATGCTATATTTTGTGAAAATACTGAACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR CAA 90 bp | CTCGTGTCCAACTGCTCGTCTGTCGTTTCTTTCAACATCGATACAAAACACAGGGCCTTCAGCAATTCTTaGAATCTCTTCGACAATGAA | + |
|
Preference number: 3 (lower is better) Translates to: LVSNCSSVVSFNIDTKHRAFSNS*NLFDNE Trigger: TTCATTGTCGAAGAGATTCAAAGAATTGCTGAAGGC...CCTGTGTTTTGTATCGATGTTGAAAGAAACGACAGACGAGCAGTTGGACACGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR GCA 72 bp | ACGTGCTCATATGCTTCAAAAAGACACCTCATAGTTTaGAGCTTCACAACATCTATGTATGGGCCTTCAGCA | + |
|
Preference number: 3 (lower is better) Translates to: TCSYASKRHLIV*SFTTSMYGPSA Trigger: TGCTGAAGGCCCATACATAGATGTTGTGAAGCTGCAAACTATGAGGTGTCTTTTTGAAGCATATGAGCACGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR-3UTR CAA 90 bp | TGTCCAACTGCTCGTCTGTCGTTTCTTTCAACATCGATACAAAACACAGGAATTAAGACACCTCATAGTTaGCAGCTTCACAACATCTAT | + |
|
Preference number: 3 (lower is better) Translates to: CPTARLSFLSTSIQNTGIKTPHS*QLHNIY Trigger: ATAGATGTTGTGAAGCTGCAAACTATGAGGTGTCTT...AATTCCTGTGTTTTGTATCGATGTTGAAAGAAACGACAGACGAGCAGTTGGACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR GCA 72 bp | CTGATTTTGCTTTCGCTCTGTGTTCTCAGCGCGGTTTaGATTATTCTTAAACAGATCGTTGAAAAGCTTCTT | + |
|
Preference number: 3 (lower is better) Translates to: LILLSLCVLSAV*IILKQIVEKLL Trigger: AAGAAGCTTTTCAACGATCTGTTTAAGAATAATGCAAACCGCGCTGAGAACACAGAGCGAAAGCAAAATCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CCA 72 bp | ACACCTCATAGTTTGCAGCTTCACAACATCTATGTATaGGCCTTCAGCAATTCTTTGAATCTCTTCGACAAT | + |
|
Preference number: 3 (lower is better) Translates to: TPHSLQLHNIYV*AFSNSLNLFDN Trigger: ATTGTCGAAGAGATTCAAAGAATTGCTGAAGGCCCATACATAGATGTTGTGAAGCTGCAAACTATGAGGTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| CDS-3UTR TCA 90 bp | TCGTGTCCAACTGCTCGTCTGTCGTTTCTTTCAACATCGATACAAAACACAGGACAGAACAGCGGATACTaGCGGCAAATCTCGCGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: SCPTARLSFLSTSIQNTGQNSGY*RQISRP Trigger: GGGGCGCGAGATTTGCCGTCAGTATCCGCTGTTCTG...TCCTGTGTTTTGTATCGATGTTGAAAGAAACGACAGACGAGCAGTTGGACACGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CAA 72 bp | TGTCAGACAGAACTGCAGGACGTGCACGGCCCCTTCTaGTTTCAGGAAGTTCATAAAGCGGAACAAAAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: CQTELQDVHGPF*FQEVHKAEQKV Trigger: GACCTTTTGTTCCGCTTTATGAACTTCCTGAAACAAGAAGGGGCCGTGCACGTCCTGCAGTTCTGTCTGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CAA 72 bp | GGAAGTATCTTATCTAGAAACTGTGTCTCCCCACCGTaGGGGGAGAGAAAGTCAGCCAGAAGCTGGCTGTTA | + |
|
Preference number: 4 (lower is better) Translates to: GSILSRNCVSPP*GERKSARSWLL Trigger: TAACAGCCAGCTTCTGGCTGACTTTCTCTCCCCCAACGGTGGGGAGACACAGTTTCTAGATAAGATACTTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| CDS-3UTR CCA 90 bp | CTTAGGCTACCTCTGTTGAATTTGGAATTGCGTGTGGGCGATTCTGCACCTCTTCACATCCCTGTACCATaGATAGACAAAGTTTTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: LRLPLLNLELRVGDSAPLHIPVP*IDKVFQ Trigger: TTGGAAAACTTTGTCTATCCATGGTACAGGGATGTG...AAGAGGTGCAGAATCGCCCACACGCAATTCCAAATTCAACAGAGGTAGCCTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CAA 72 bp | GACGTGCTCATATGCTTCAAAAAGACACCTCATAGTTaGCAGCTTCACAACATCTATGTATGGGCCTTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: DVLICFKKTPHS*QLHNIYVWAFS Trigger: GCTGAAGGCCCATACATAGATGTTGTGAAGCTGCAAACTATGAGGTGTCTTTTTGAAGCATATGAGCACGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CAA 72 bp | TCATCCAAACTTAGGCTACCTCTGTTGAATTTGGAATaGCGTGTGGGCGATTCTGCACCTCTTAAAAGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: SSKLRLPLLNLE*RVGDSAPLKSC Trigger: GCAACTTTTAAGAGGTGCAGAATCGCCCACACGCAATTCCAAATTCAACAGAGGTAGCCTAAGTTTGGATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CAA 72 bp | CTGAGAATCGTCAGTTCTGGCCGACTCGGTTTAGGTTaGGGAGATTCGCAAGAATTAATGAAACTCATGATG | + |
|
Preference number: 4 (lower is better) Translates to: LRIVSSGRLGLG*GDSQELMKLMM Trigger: CATCATGAGTTTCATTAATTCTTGCGAATCTCCCAAACCTAAACCGAGTCGGCCAGAACTGACGATTCTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| 3UTR CAA 72 bp | CCCTCCATTGTCGTACTCTTGAATACGCCTTTAATTTaGCTACCTATTCTGCTGATTCCAAACGATTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: PSIVVLLNTPLI*LPILLIPNDSP Trigger: AGGAGAATCGTTTGGAATCAGCAGAATAGGTAGCAAAATTAAAGGCGTATTCAAGAGTACGACAATGGAGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| CDS-3UTR GCA 90 bp | TCCTGCTGTTCTCTGATTTGTTTCAGCTCTAACTTCAGCACGGATGGCTTTTTAAGCAAGGAAGGCCTATaGCGTTTACATTTCACTTTA | + |
|
Preference number: 4 (lower is better) Translates to: SCCSLICFSSNFSTDGFLSKEGL*RLHFTL Trigger: TAAAGTGAAATGTAAACGGCATAGGCCTTCCTTGCT...TAAAAAGCCATCCGTGCTGAAGTTAGAGCTGAAACAAATCAGAGAACAGCAGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| CDS-3UTR TCA 90 bp | ATCTCTTCGACAATGAAGGGATCAAAGCGAATTTTGTCAATGCTTTCATCCAAGTGCGGAAATAACTCTTaGAGTCCTAATTGCTTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: ISSTMKGSKRILSMLSSKCGNNS*SPNCLG Trigger: ACCCAAGCAATTAGGACTTCAAGAGTTATTTCCGCA...CTTGGATGAAAGCATTGACAAAATTCGCTTTGATCCCTTCATTGTCGAAGAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000126405.3 |
||
| CDS TCA 90 bp | GAGGCGACGCTGAGGCAGAGCAGCAGAAAGCAGAACAGCGGATACTaGCGGCAAATCTCGCGCCCCACGTCCAGCCGCAGCCGCTGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: EATLRQSSRKQNSGY*RQISRPTSSRSRCF Trigger: GAAGCAGCGGCTGCGGCTGGACGTGGGGCGCGAGATTTGCCGTCAGTATCCGCTGTTCTGCTTTCTGCTGCTCTGCCTCAGCGTCGCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000126405.3 ENSMUST00000165315.9 ENSMUST00000173011.9 ENSMUST00000173039.9 ENSMUST00000174806.9 ENSMUST00000239462.2 |
||
| CDS TCA 72 bp | CTGAGGCAGAGCAGCAGAAAGCAGAACAGCGGATACTaGCGGCAAATCTCGCGCCCCACGTCCAGCCGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: LRQSSRKQNSGY*RQISRPTSSRS Trigger: GCTGCGGCTGGACGTGGGGCGCGAGATTTGCCGTCAGTATCCGCTGTTCTGCTTTCTGCTGCTCTGCCTCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000126405.3 ENSMUST00000165315.9 ENSMUST00000173011.9 ENSMUST00000173039.9 ENSMUST00000174806.9 ENSMUST00000239462.2 |
||
| CDS CAA 72 bp | AACGACCAGAAGATCATTAAGACATGCAGATACCTGTaGAGGAGCAGCGAGGCGACGCTGAGGCAGAGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: NDQKIIKTCRYL*RSSEATLRQSS Trigger: GCTGCTCTGCCTCAGCGTCGCCTCGCTGCTCCTCAACAGGTATCTGCATGTCTTAATGATCTTCTGGTCGTT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000126405.3 ENSMUST00000165315.9 ENSMUST00000173011.9 ENSMUST00000173039.9 ENSMUST00000174806.9 ENSMUST00000239462.2 |
||