Pregenerated sensors for SNW1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021039Ensembl transcript IDs: ENSMUST00000021428.9
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGGAGTCTCAAGTGTCTGGAGGGGGTGGGGACATCTGTTCACAATaGGGCCAGACCAGGCAGTCCTCTGCTGCATATGTCAGATTTAGT | + |
|
Preference number: 1 (lower is better) Translates to: LESQVSGGGGDICSQ*GQTRQSSAAYVRFS Trigger: ACTAAATCTGACATATGCAGCAGAGGACTGCCTGGTCTGGCCTCATTGTGAACAGATGTCCCCACCCCCTCCAGACACTTGAGACTCCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| 3UTR-3UTR CCA 90 bp | TGTCACACACAAGGAAGGAATCTCAATTCTGTGTGGGGCAGTGGTATTTCTAAGAGTGTCTGGAGGGGGTaGGGACATCTGTTCACAATG | + |
|
Preference number: 2 (lower is better) Translates to: CHTQGRNLNSVWGSGISKSVWRG*GHLFTM Trigger: CATTGTGAACAGATGTCCCCACCCCCTCCAGACACT...CTTAGAAATACCACTGCCCCACACAGAATTGAGATTCCTTCCTTGTGTGTGACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| 3UTR-3UTR CCA 90 bp | CATAACGTTTACAGAAAAGGTTACAGCTGGATTAGTGTCACACACAAGGAAGGAGGAGTCTCAAGTGTCTaGAGGGGGTGGGGACATCTG | + |
|
Preference number: 2 (lower is better) Translates to: HNVYRKGYSWISVTHKEGGVSSV*RGWGHL Trigger: CAGATGTCCCCACCCCCTCCAGACACTTGAGACTCC...TCCTTCCTTGTGTGTGACACTAATCCAGCTGTAACCTTTTCTGTAAACGTTATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| 3UTR-3UTR GCA 90 bp | TTTGAGGTGAGGTTATTCATAACGTTTACAGAAAAGGTTACAGCTGGATTAGTGGGTATTTCTAAGTGCTaGAAGATTGGAGAAGCACAA | + |
|
Preference number: 2 (lower is better) Translates to: FEVRLFITFTEKVTAGLVGISKC*KIGEAQ Trigger: TTGTGCTTCTCCAATCTTGCAGCACTTAGAAATACC...CACTAATCCAGCTGTAACCTTTTCTGTAAACGTTATGAATAACCTCACCTCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| 3UTR CCA 72 bp | GCCCTATTCCCTGGAGTCTCAAGTGTCTGGAGGGGGTaGGGACATCTGTTCACAATGAGGCCAGACCAGGCA | + |
|
Preference number: 3 (lower is better) Translates to: ALFPGVSSVWRG*GHLFTMRPDQA Trigger: TGCCTGGTCTGGCCTCATTGTGAACAGATGTCCCCACCCCCTCCAGACACTTGAGACTCCAGGGAATAGGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| 3UTR TCA 72 bp | GAGCTCCAGTGTGTGAACATTAGCCCACTCACCATTTaGGGTGAGGTTATTCATAACGTTTACAGAAAAGGT | + |
|
Preference number: 3 (lower is better) Translates to: ELQCVNISPLTI*GEVIHNVYRKG Trigger: ACCTTTTCTGTAAACGTTATGAATAACCTCACCTCAAATGGTGAGTGGGCTAATGTTCACACACTGGAGCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| 3UTR CCA 72 bp | GAGGTTATTCATAACGTTTACAGAAAAGGTTACAGCTaGATTAGTGTCACACACAAGGAAGGAATCTCAATT | + |
|
Preference number: 3 (lower is better) Translates to: EVIHNVYRKGYS*ISVTHKEGISI Trigger: AATTGAGATTCCTTCCTTGTGTGTGACACTAATCCAGCTGTAACCTTTTCTGTAAACGTTATGAATAACCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| 3UTR CAA 72 bp | CATGGCGCGGTGGAGAAGCACACAGGGCAAATGCAGTaGACAGAGCTCCAGTGTGTGAACATTAGCCCACTC | + |
|
Preference number: 4 (lower is better) Translates to: HGAVEKHTGQMQ*TELQCVNISPL Trigger: GAGTGGGCTAATGTTCACACACTGGAGCTCTGTCAACTGCATTTGCCCTGTGTGCTTCTCCACCGCGCCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR GCA 90 bp | CCCACTAGGACGCCCTATTCCCTGGAGTCTCAAGTGTCTGGAGGGGGTGGGGACTCCCTGCCGAGCAATTaGATCATACTTAATTTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: PTRTPYSLESQVSGGGGDSLPSN*IILNFP Trigger: GGGAAAATTAAGTATGATGCAATTGCTCGGCAGGGA...GTCCCCACCCCCTCCAGACACTTGAGACTCCAGGGAATAGGGCGTCCTAGTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CCA 90 bp | CACACAGGGCAAATGCAGTTGACAGAGCTCCAGTGTGTGAACATTAGCCCACTCCTGCACGAACTGGCATaGCTGCAGCAACCTTCTGCG | + |
|
Preference number: 4 (lower is better) Translates to: HTGQMQLTELQCVNISPLLHELA*LQQPSA Trigger: CGCAGAAGGTTGCTGCAGCCATGCCAGTTCGTGCAG...GAGTGGGCTAATGTTCACACACTGGAGCTCTGTCAACTGCATTTGCCCTGTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CCA 90 bp | CCCTGGAGTCTCAAGTGTCTGGAGGGGGTGGGGACATCTGTTCACAATGAGGCCTACTCCTTGCTGAGATaGTGTGTAGCGGATATACTG | + |
|
Preference number: 4 (lower is better) Translates to: PWSLKCLEGVGTSVHNEAYSLLR*CVADIL Trigger: CAGTATATCCGCTACACACCATCTCAGCAAGGAGTA...GGCCTCATTGTGAACAGATGTCCCCACCCCCTCCAGACACTTGAGACTCCAGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR TCA 90 bp | AAGTGTCTGGAGGGGGTGGGGACATCTGTTCACAATGAGGCCAGACCAGGCAGTTCTCTGTTTGCGGTCTaGTCCAGAAAACTCCTTATC | + |
|
Preference number: 4 (lower is better) Translates to: KCLEGVGTSVHNEARPGSSLFAV*SRKLLI Trigger: GATAAGGAGTTTTCTGGATCAGACCGCAAACAGAGA...ACTGCCTGGTCTGGCCTCATTGTGAACAGATGTCCCCACCCCCTCCAGACACTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR GCA 90 bp | GTTCACAATGAGGCCAGACCAGGCAGTCCTCTGCTGCATATGTCAGATTTAGTTAGCCAGCTTGTCAGCTaGACGAACTGGCATGGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: VHNEARPGSPLLHMSDLVSQLVS*TNWHGC Trigger: GCAGCCATGCCAGTTCGTGCAGCTGACAAGCTGGCT...AACTAAATCTGACATATGCAGCAGAGGACTGCCTGGTCTGGCCTCATTGTGAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CCA 90 bp | GGACATCTGTTCACAATGAGGCCAGACCAGGCAGTCCTCTGCTGCATATGTCAGGGATACTGGGCCACATaGATTTCTGGGAAAGCACCT | + |
|
Preference number: 4 (lower is better) Translates to: GHLFTMRPDQAVLCCICQGYWAT*ISGKAP Trigger: AGGTGCTTTCCCAGAAATCCATGTGGCCCAGTATCC...CTGACATATGCAGCAGAGGACTGCCTGGTCTGGCCTCATTGTGAACAGATGTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CCA 90 bp | CCACCCCCACCCACTAGGACGCCCTATTCCCTGGAGTCTCAAGTGTCTGGAGGGGCGCTTCAGCCAGTTTaGCAAAATTTTCATTTATGT | + |
|
Preference number: 4 (lower is better) Translates to: PPPPTRTPYSLESQVSGGALQPV*QNFHLC Trigger: ACATAAATGAAAATTTTGCCAAACTGGCTGAAGCGC...CCCTCCAGACACTTGAGACTCCAGGGAATAGGGCGTCCTAGTGGGTGGGGGTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CCA 90 bp | GGACGCCCTATTCCCTGGAGTCTCAAGTGTCTGGAGGGGGTGGGGACATCTGTTCATACTGAACTTCATTaGAAGTTCGAGGATTGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: GRPIPWSLKCLEGVGTSVHTELH*KFEDWA Trigger: TGCCCAATCCTCGAACTTCCAATGAAGTTCAGTATG...AACAGATGTCCCCACCCCCTCCAGACACTTGAGACTCCAGGGAATAGGGCGTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR TCA 90 bp | CACACAGGGCAAATGCAGTTGACAGAGCTCCAGTGTGTGAACATTAGCCCACTCTCTCCACGTGGGTTTTaGTTCCAGCTCTCCTTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: HTGQMQLTELQCVNISPLSPRGF*FQLSFL Trigger: GAGAAAGGAGAGCTGGAATCAAAACCCACGTGGAGA...GAGTGGGCTAATGTTCACACACTGGAGCTCTGTCAACTGCATTTGCCCTGTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR GCA 90 bp | GGACATCTGTTCACAATGAGGCCAGACCAGGCAGTCCTCTGCTGCATATGTCAGTCTTTGGACTGTCCCTaGCGAGCAATTGCATCATAC | + |
|
Preference number: 4 (lower is better) Translates to: GHLFTMRPDQAVLCCICQSLDCP*RAIASY Trigger: GTATGATGCAATTGCTCGGCAGGGACAGTCCAAAGA...CTGACATATGCAGCAGAGGACTGCCTGGTCTGGCCTCATTGTGAACAGATGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR GCA 90 bp | AATGCCCCTACATCCCAGAATGAAAAGGAGTGCTGGGATCTATCATCGAGATTTAGAGTGCATTACAGGTaGAGGAGGAGACGGTGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: NAPTSQNEKECWDLSSRFRVHYR*RRRRWS Trigger: GGACCACCGTCTCCTCCTGCACCTGTAATGCACTCT...AAATCTCGATGATAGATCCCAGCACTCCTTTTCATTCTGGGATGTAGGGGCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CCA 90 bp | AACAGTCCAGTCTTTATCTCCCTCCTGGTCATCTCTCTGATGATTCCTCATCCCTCCTCTTTCTCCACGTaGGTTTTGATTCCAGCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: NSPVFISLLVISLMIPHPSSFST*VLIPAL Trigger: GAGAGCTGGAATCAAAACCCACGTGGAGAAAGAGGA...GGGATGAGGAATCATCAGAGAGATGACCAGGAGGGAGATAAAGACTGGACTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR GCA 90 bp | AATGCCCCTACATCCCAGAATGAAAAGGAGTGCTGGGATCTATCATCGAGATTTCAGGTCTGGGTCATCTaGATTCATAACCTCCTTAGG | + |
|
Preference number: 4 (lower is better) Translates to: NAPTSQNEKECWDLSSRFQVWVI*IHNLLR Trigger: CCTAAGGAGGTTATGAATGCAGATGACCCAGACCTG...AAATCTCGATGATAGATCCCAGCACTCCTTTTCATTCTGGGATGTAGGGGCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CCA 90 bp | CATAACGTTTACAGAAAAGGTTACAGCTGGATTAGTGTCACACACAAGGAAGGAGGGCCGTTGCAGGTCTaGGTCATCTGCATTCATAAC | + |
|
Preference number: 4 (lower is better) Translates to: HNVYRKGYSWISVTHKEGGPLQV*VICIHN Trigger: GTTATGAATGCAGATGACCCAGACCTGCAACGGCCC...TCCTTCCTTGTGTGTGACACTAATCCAGCTGTAACCTTTTCTGTAAACGTTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR GCA 90 bp | TTTGAGGTGAGGTTATTCATAACGTTTACAGAAAAGGTTACAGCTGGATTAGTGACGAACTGGCATGGCTaGAGCAACCTTCTGCGACAC | + |
|
Preference number: 4 (lower is better) Translates to: FEVRLFITFTEKVTAGLVTNWHG*SNLLRH Trigger: GTGTCGCAGAAGGTTGCTGCAGCCATGCCAGTTCGT...CACTAATCCAGCTGTAACCTTTTCTGTAAACGTTATGAATAACCTCACCTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR TCA 90 bp | GGTGAGGTTATTCATAACGTTTACAGAAAAGGTTACAGCTGGATTAGTGTCACAGTCTGCAGTGATCTCTaGGATCTTGCCCTTTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: GEVIHNVYRKGYSWISVTVCSDL*DLALSS Trigger: TGAAGAAAGGGCAAGATCTCAGAGATCACTGCAGAC...TGTGACACTAATCCAGCTGTAACCTTTTCTGTAAACGTTATGAATAACCTCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR GCA 90 bp | TTTGAGGTGAGGTTATTCATAACGTTTACAGAAAAGGTTACAGCTGGATTAGTGGCTGCAGCAACCTTCTaGGACACAGATTTCTCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: FEVRLFITFTEKVTAGLVAAATF*DTDFSK Trigger: CTTGGAGAAATCTGTGTCGCAGAAGGTTGCTGCAGC...CACTAATCCAGCTGTAACCTTTTCTGTAAACGTTATGAATAACCTCACCTCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR TCA 90 bp | ACAGAAAAGGTTACAGCTGGATTAGTGTCACACACAAGGAAGGAATCTCAATTCTGTATTTGCTGTAAATaGCCTTGTCTTTGGACTGTC | + |
|
Preference number: 4 (lower is better) Translates to: TEKVTAGLVSHTRKESQFCICCK*PCLWTV Trigger: GACAGTCCAAAGACAAGGTCATTTACAGCAAATACA...GAATTGAGATTCCTTCCTTGTGTGTGACACTAATCCAGCTGTAACCTTTTCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CAA 90 bp | AAGTGTCTGGAGGGGGTGGGGACATCTGTTCACAATGAGGCCAGACCAGGCAGTTCATGCTCATGTTCCTaGGGGCGACTGCTATCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: KCLEGVGTSVHNEARPGSSCSCS*GRLLSE Trigger: CTCTGATAGCAGTCGCCCCAAGGAACATGAGCATGA...ACTGCCTGGTCTGGCCTCATTGTGAACAGATGTCCCCACCCCCTCCAGACACTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CAA 90 bp | GGACGCCCTATTCCCTGGAGTCTCAAGTGTCTGGAGGGGGTGGGGACATCTGTTTTCTTCAGCTTCAAGTaGGTCCTGAGACAGCTGAGT | + |
|
Preference number: 5 (lower is better) Translates to: GRPIPWSLKCLEGVGTSVFFSFK*VLRQLS Trigger: ACTCAGCTGTCTCAGGACCAACTTGAAGCTGAAGAA...AACAGATGTCCCCACCCCCTCCAGACACTTGAGACTCCAGGGAATAGGGCGTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CAA 90 bp | AAGTGTCTGGAGGGGGTGGGGACATCTGTTCACAATGAGGCCAGACCAGGCAGTTTCTCCACGTGGGTTTaGATTCCAGCTCTCCTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: KCLEGVGTSVHNEARPGSFSTWV*IPALLS Trigger: AGAAAGGAGAGCTGGAATCAAAACCCACGTGGAGAA...ACTGCCTGGTCTGGCCTCATTGTGAACAGATGTCCCCACCCCCTCCAGACACTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CAA 90 bp | AGAGGATGTCCCCACCCCCACCCACTAGGACGCCCTATTCCCTGGAGTCTCAAGAATCCTCTAATAGTCTaGGAATCCAGCCTTTCCTAT | + |
|
Preference number: 5 (lower is better) Translates to: RGCPHPHPLGRPIPWSLKNPLIV*ESSLSY Trigger: ATAGGAAAGGCTGGATTCCAAGACTATTAGAGGATT...CTTGAGACTCCAGGGAATAGGGCGTCCTAGTGGGTGGGGGTGGGGACATCCTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CAA 90 bp | GGACGCCCTATTCCCTGGAGTCTCAAGTGTCTGGAGGGGGTGGGGACATCTGTTCATTTCTCTGTAGTTTaGACCTCTTATCAGGAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: GRPIPWSLKCLEGVGTSVHFSVV*TSYQEL Trigger: CAGCTCCTGATAAGAGGTCAAAACTACAGAGAAATG...AACAGATGTCCCCACCCCCTCCAGACACTTGAGACTCCAGGGAATAGGGCGTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CAA 90 bp | ACAGCTGGATTAGTGTCACACACAAGGAAGGAATCTCAATTCTGTGTGGGGCAGCCACTGTCCATACCCTaGGATTGGTTGAAGAGCCTT | + |
|
Preference number: 5 (lower is better) Translates to: TAGLVSHTRKESQFCVGQPLSIP*DWLKSL Trigger: AAGGCTCTTCAACCAATCCAAGGGTATGGACAGTGG...CTGCCCCACACAGAATTGAGATTCCTTCCTTGTGTGTGACACTAATCCAGCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CAA 90 bp | CCTATTCCCTGGAGTCTCAAGTGTCTGGAGGGGGTGGGGACATCTGTTCACAATGATCTTCCACTCTTGTaGTTCCTTTACAGTCATCTT | + |
|
Preference number: 5 (lower is better) Translates to: PIPWSLKCLEGVGTSVHNDLPLL*FLYSHL Trigger: AAGATGACTGTAAAGGAACAACAAGAGTGGAAGATC...ATTGTGAACAGATGTCCCCACCCCCTCCAGACACTTGAGACTCCAGGGAATAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CAA 90 bp | AACAGTCCAGTCTTTATCTCCCTCCTGGTCATCTCTCTGATGATTCCTCATCCCCGGGATCTTCCACTCTaGTTGTTCCTTTACAGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: NSPVFISLLVISLMIPHPRDLPL*LFLYSH Trigger: ATGACTGTAAAGGAACAACAAGAGTGGAAGATCCCG...GGGATGAGGAATCATCAGAGAGATGACCAGGAGGGAGATAAAGACTGGACTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CAA 90 bp | AATGCCCCTACATCCCAGAATGAAAAGGAGTGCTGGGATCTATCATCGAGATTTTTAGCGTTCTTCCAGTaGGAAATACAAGGCGGGATC | + |
|
Preference number: 5 (lower is better) Translates to: NAPTSQNEKECWDLSSRFLAFFQ*EIQGGI Trigger: GATCCCGCCTTGTATTTCCAACTGGAAGAACGCTAA...AAATCTCGATGATAGATCCCAGCACTCCTTTTCATTCTGGGATGTAGGGGCATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS-3UTR CAA 90 bp | CATAACGTTTACAGAAAAGGTTACAGCTGGATTAGTGTCACACACAAGGAAGGAGTGATCTCTGAGATCTaGCCCTTTCTTCAGCTTCAA | + |
|
Preference number: 5 (lower is better) Translates to: HNVYRKGYSWISVTHKEGVISEI*PFLQLQ Trigger: TTGAAGCTGAAGAAAGGGCAAGATCTCAGAGATCAC...TCCTTCCTTGTGTGTGACACTAATCCAGCTGTAACCTTTTCTGTAAACGTTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS CAA 90 bp | AGCGTTCTTCCAGTTGGAAATACAAGGCGGGATCTTCCACTCTTGTaGTTCCTTTACAGTCATCTTCCGACTAGGAGAGTGCATTACAGG | + |
|
Preference number: 6 (lower is better) Translates to: SVLPVGNTRRDLPLL*FLYSHLPTRRVHYR Trigger: CCTGTAATGCACTCTCCTAGTCGGAAGATGACTGTAAAGGAACAACAAGAGTGGAAGATCCCGCCTTGTATTTCCAACTGGAAGAACGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS CAA 72 bp | CCAGTTGGAAATACAAGGCGGGATCTTCCACTCTTGTaGTTCCTTTACAGTCATCTTCCGACTAGGAGAGTG | + |
|
Preference number: 6 (lower is better) Translates to: PVGNTRRDLPLL*FLYSHLPTRRV Trigger: CACTCTCCTAGTCGGAAGATGACTGTAAAGGAACAACAAGAGTGGAAGATCCCGCCTTGTATTTCCAACTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS CAA 90 bp | CTTAGCGTTCTTCCAGTTGGAAATACAAGGCGGGATCTTCCACTCTaGTTGTTCCTTTACAGTCATCTTCCGACTAGGAGAGTGCATTAC | + |
|
Preference number: 6 (lower is better) Translates to: LSVLPVGNTRRDLPL*LFLYSHLPTRRVHY Trigger: GTAATGCACTCTCCTAGTCGGAAGATGACTGTAAAGGAACAACAAGAGTGGAAGATCCCGCCTTGTATTTCCAACTGGAAGAACGCTAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS CAA 72 bp | TCTAATGGGATCGTATACCCCTTAGCGTTCTTCCAGTaGGAAATACAAGGCGGGATCTTCCACTCTTGTTGT | + |
|
Preference number: 6 (lower is better) Translates to: SNGIVYPLAFFQ*EIQGGIFHSCC Trigger: ACAACAAGAGTGGAAGATCCCGCCTTGTATTTCCAACTGGAAGAACGCTAAGGGGTATACGATCCCATTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||
| CDS CAA 90 bp | AGCCGTTTATCTAATGGGATCGTATACCCCTTAGCGTTCTTCCAGTaGGAAATACAAGGCGGGATCTTCCACTCTTGTTGTTCCTTTACA | + |
|
Preference number: 6 (lower is better) Translates to: SRLSNGIVYPLAFFQ*EIQGGIFHSCCSFT Trigger: TGTAAAGGAACAACAAGAGTGGAAGATCCCGCCTTGTATTTCCAACTGGAAGAACGCTAAGGGGTATACGATCCCATTAGATAAACGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021428.9 |
||