Pregenerated sensors for SNUPN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055334Ensembl transcript IDs: ENSMUST00000068856.5
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCAACATTCCAGACAGGGGGCAACCTGGGTTTGGAAAGAATGCTCTaGAATAAGGTCACTAATGGCTATCATCACTGTCCTCTGCCCCAG | + |
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Preference number: 1 (lower is better) Translates to: PTFQTGGNLGLERML*NKVTNGYHHCPLPQ Trigger: CTGGGGCAGAGGACAGTGATGATAGCCATTAGTGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGTTGCCCCCTGTCTGGAATGTTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| 3UTR TCA 90 bp | ACCTGGATTCCAACTCCATCCAAAAGAGACCTACCCACAACAGTCTaGGCCAACATTCCAGACAGGGGGCAACCTGGGTTTGGAAAGAAT | + |
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Preference number: 1 (lower is better) Translates to: TWIPTPSKRDLPTTV*ANIPDRGQPGFGKN Trigger: ATTCTTTCCAAACCCAGGTTGCCCCCTGTCTGGAATGTTGGCTCAGACTGTTGTGGGTAGGTCTCTTTTGGATGGAGTTGGAATCCAGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| 3UTR GCA 90 bp | CTGAGCCAACATTCCAGACAGGGGGCAACCTGGGTTTGGAAAGAATaGTCTGAAATAAGGTCACTAATGGCTATCATCACTGTCCTCTGC | + |
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Preference number: 1 (lower is better) Translates to: LSQHSRQGATWVWKE*SEIRSLMAIITVLC Trigger: GCAGAGGACAGTGATGATAGCCATTAGTGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGTTGCCCCCTGTCTGGAATGTTGGCTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| 3UTR CCA 90 bp | CCTACCCACAACAGTCTGAGCCAACATTCCAGACAGGGGGCAACCTaGGTTTGGAAAGAATGCTCTGAAATAAGGTCACTAATGGCTATC | + |
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Preference number: 1 (lower is better) Translates to: PTHNSLSQHSRQGAT*VWKECSEIRSLMAI Trigger: GATAGCCATTAGTGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGTTGCCCCCTGTCTGGAATGTTGGCTCAGACTGTTGTGGGTAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| 3UTR CCA 90 bp | CACAACAGTCTGAGCCAACATTCCAGACAGGGGGCAACCTGGGTTTaGAAAGAATGCTCTGAAATAAGGTCACTAATGGCTATCATCACT | + |
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Preference number: 1 (lower is better) Translates to: HNSLSQHSRQGATWV*KECSEIRSLMAIIT Trigger: AGTGATGATAGCCATTAGTGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGTTGCCCCCTGTCTGGAATGTTGGCTCAGACTGTTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| 3UTR-3UTR CCA 90 bp | TACCTGGATTCCAACTCCATCCAAAAGAGACCTACCCACAACAGTCTGAGCCAAGGGGCAACCTGGGTTTaGAAAGAATGCTCTGAAATA | + |
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Preference number: 2 (lower is better) Translates to: YLDSNSIQKRPTHNSLSQGATWV*KECSEI Trigger: TATTTCAGAGCATTCTTTCCAAACCCAGGTTGCCCC...TTGGCTCAGACTGTTGTGGGTAGGTCTCTTTTGGATGGAGTTGGAATCCAGGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| 3UTR-3UTR GCA 90 bp | CCTAACACAGCAAGAGATATTCATATATACCTGGATTCCAACTCCATCCAAAAGATCATCACTGTCCTCTaGCCCAGTCTTTCCTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: PNTARDIHIYLDSNSIQKIITVL*PSLSWA Trigger: AGCCCAGGAAAGACTGGGGCAGAGGACAGTGATGAT...CTTTTGGATGGAGTTGGAATCCAGGTATATATGAATATCTCTTGCTGTGTTAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| 3UTR-3UTR GCA 90 bp | TATATACCTGGATTCCAACTCCATCCAAAAGAGACCTACCCACAACAGTCTGAGTGGGTTTGGAAAGAATaGTCTGAAATAAGGTCACTA | + |
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Preference number: 2 (lower is better) Translates to: YIPGFQLHPKETYPQQSEWVWKE*SEIRSL Trigger: TAGTGACCTTATTTCAGAGCATTCTTTCCAAACCCA...CTCAGACTGTTGTGGGTAGGTCTCTTTTGGATGGAGTTGGAATCCAGGTATATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| 3UTR TCA 72 bp | CCAACTCCATCCAAAAGAGACCTACCCACAACAGTCTaGGCCAACATTCCAGACAGGGGGCAACCTGGGTTT | + |
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Preference number: 3 (lower is better) Translates to: PTPSKRDLPTTV*ANIPDRGQPGF Trigger: AAACCCAGGTTGCCCCCTGTCTGGAATGTTGGCTCAGACTGTTGTGGGTAGGTCTCTTTTGGATGGAGTTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| 3UTR CCA 72 bp | CTGAGCCAACATTCCAGACAGGGGGCAACCTGGGTTTaGAAAGAATGCTCTGAAATAAGGTCACTAATGGCT | + |
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Preference number: 3 (lower is better) Translates to: LSQHSRQGATWV*KECSEIRSLMA Trigger: AGCCATTAGTGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGTTGCCCCCTGTCTGGAATGTTGGCTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| 3UTR TCA 72 bp | CAGACAGGGGGCAACCTGGGTTTGGAAAGAATGCTCTaGAATAAGGTCACTAATGGCTATCATCACTGTCCT | + |
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Preference number: 3 (lower is better) Translates to: QTGGNLGLERML*NKVTNGYHHCP Trigger: AGGACAGTGATGATAGCCATTAGTGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGTTGCCCCCTGTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| 3UTR CCA 72 bp | AACAGTCTGAGCCAACATTCCAGACAGGGGGCAACCTaGGTTTGGAAAGAATGCTCTGAAATAAGGTCACTA | + |
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Preference number: 3 (lower is better) Translates to: NSLSQHSRQGAT*VWKECSEIRSL Trigger: TAGTGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGTTGCCCCCTGTCTGGAATGTTGGCTCAGACTGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| 3UTR GCA 72 bp | CATTCCAGACAGGGGGCAACCTGGGTTTGGAAAGAATaGTCTGAAATAAGGTCACTAATGGCTATCATCACT | + |
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Preference number: 3 (lower is better) Translates to: HSRQGATWVWKE*SEIRSLMAIIT Trigger: AGTGATGATAGCCATTAGTGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGTTGCCCCCTGTCTGGAATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| 3UTR CCA 72 bp | ATATACCTAACACAGCAAGAGATATTCATATATACCTaGATTCCAACTCCATCCAAAAGAGACCTACCCACA | + |
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Preference number: 3 (lower is better) Translates to: IYLTQQEIFIYT*IPTPSKRDLPT Trigger: TGTGGGTAGGTCTCTTTTGGATGGAGTTGGAATCCAGGTATATATGAATATCTCTTGCTGTGTTAGGTATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR TCA 90 bp | CCACAACAGTCTGAGCCAACATTCCAGACAGGGGGCAACCTGGGTTTGGAAAGAGTCTTTGGCTGTTGTTaGGTTTCTCCTGTTGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: PQQSEPTFQTGGNLGLERVFGCC*VSPVAS Trigger: GGAGGCAACAGGAGAAACTCAACAACAGCCAAAGAC...TCTTTCCAAACCCAGGTTGCCCCCTGTCTGGAATGTTGGCTCAGACTGTTGTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CCA 90 bp | ATAAGGTCACTAATGGCTATCATCACTGTCCTCTGCCCCAGTCTTTCCTGGGCTGGTCAGTGGGCCAGCTaGAACAGCTACACCCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: IRSLMAIITVLCPSLSWAGQWAS*NSYTQN Trigger: ATTCTGGGTGTAGCTGTTCCAGCTGGCCCACTGACC...AGCCCAGGAAAGACTGGGGCAGAGGACAGTGATGATAGCCATTAGTGACCTTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CCA 90 bp | AATAAGGTCACTAATGGCTATCATCACTGTCCTCTGCCCCAGTCTTTCCTGGGCCGTATTCTGGCTTGGTaGTCAGTGGGCCAGCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: NKVTNGYHHCPLPQSFLGRILAW*SVGQLE Trigger: TTCCAGCTGGCCCACTGACCACCAAGCCAGAATACG...GCCCAGGAAAGACTGGGGCAGAGGACAGTGATGATAGCCATTAGTGACCTTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR TCA 90 bp | ATACCTGGATTCCAACTCCATCCAAAAGAGACCTACCCACAACAGTCTGAGCCATACTTGGACTTGTATTaGCACAGGCGTGGGTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: IPGFQLHPKETYPQQSEPYLDLY*HRRGWG Trigger: CCCCCACCCACGCCTGTGTCAATACAAGTCCAAGTA...TGGCTCAGACTGTTGTGGGTAGGTCTCTTTTGGATGGAGTTGGAATCCAGGTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR GCA 90 bp | AATAAGGTCACTAATGGCTATCATCACTGTCCTCTGCCCCAGTCTTTCCTGGGCTTGAGTTTCTCCTGTTaGCTCCGGGCAGAAGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: NKVTNGYHHCPLPQSFLGLSFSC*LRAEGK Trigger: CTTCCCTTCTGCCCGGAGGCAACAGGAGAAACTCAA...GCCCAGGAAAGACTGGGGCAGAGGACAGTGATGATAGCCATTAGTGACCTTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR GCA 90 bp | AATAAGGTCACTAATGGCTATCATCACTGTCCTCTGCCCCAGTCTTTCCTGGGCTCCTGGCTCCTCTTGTaGTCAATAATCTGTTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: NKVTNGYHHCPLPQSFLGSWLLL*SIICWS Trigger: GCTCCAACAGATTATTGAGCACAAGAGGAGCCAGGA...GCCCAGGAAAGACTGGGGCAGAGGACAGTGATGATAGCCATTAGTGACCTTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CCA 90 bp | GCAACCTGGGTTTGGAAAGAATGCTCTGAAATAAGGTCACTAATGGCTATCATCTGGCTTGGTGGTCAGTaGGCCAGCTGGAACAGCTAC | + |
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Preference number: 4 (lower is better) Translates to: ATWVWKECSEIRSLMAIIWLGGQ*ASWNSY Trigger: GTAGCTGTTCCAGCTGGCCCACTGACCACCAAGCCA...GATGATAGCCATTAGTGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGTTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR TCA 90 bp | ATAAGGTCACTAATGGCTATCATCACTGTCCTCTGCCCCAGTCTTTCCTGGGCTCAGAAGCCTTGTGTGTaGGTTTCTCCTTTGTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: IRSLMAIITVLCPSLSWAQKPCV*VSPLCL Trigger: AAGACACAAAGGAGAAACTCACACACAAGGCTTCTG...AGCCCAGGAAAGACTGGGGCAGAGGACAGTGATGATAGCCATTAGTGACCTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR GCA 90 bp | CAGGGGGCAACCTGGGTTTGGAAAGAATGCTCTGAAATAAGGTCACTAATGGCTACCACAATCCATTCTTaGCCCAAATCTGAAGGGACG | + |
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Preference number: 4 (lower is better) Translates to: QGATWVWKECSEIRSLMATTIHS*PKSEGT Trigger: CGTCCCTTCAGATTTGGGGCAAGAATGGATTGTGGT...AGCCATTAGTGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGTTGCCCCCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CCA 90 bp | ACACAGCAAGAGATATTCATATATACCTGGATTCCAACTCCATCCAAAAGAGACGTGCCCAGCGTATTCTaGCTTGGTGGTCAGTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: TQQEIFIYTWIPTPSKRDVPSVF*LGGQWA Trigger: GGCCCACTGACCACCAAGCCAGAATACGCTGGGCAC...GTCTCTTTTGGATGGAGTTGGAATCCAGGTATATATGAATATCTCTTGCTGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CCA 90 bp | TACCTGGATTCCAACTCCATCCAAAAGAGACCTACCCACAACAGTCTGAGCCAATGCTCAATAATCTGTTaGAGCTGGTGCCCAGCGTAT | + |
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Preference number: 4 (lower is better) Translates to: YLDSNSIQKRPTHNSLSQCSIIC*SWCPAY Trigger: ATACGCTGGGCACCAGCTCCAACAGATTATTGAGCA...TTGGCTCAGACTGTTGTGGGTAGGTCTCTTTTGGATGGAGTTGGAATCCAGGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR GCA 90 bp | CCTAACACAGCAAGAGATATTCATATATACCTGGATTCCAACTCCATCCAAAAGCGCCGCCGCTCACTCTaGTCCAAGGAACTGTACTTG | + |
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Preference number: 4 (lower is better) Translates to: PNTARDIHIYLDSNSIQKRRRSL*SKELYL Trigger: CAAGTACAGTTCCTTGGAGCAGAGTGAGCGGCGGCG...CTTTTGGATGGAGTTGGAATCCAGGTATATATGAATATCTCTTGCTGTGTTAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR TCA 90 bp | AGAGATATTCATATATACCTGGATTCCAACTCCATCCAAAAGAGACCTACCCACTACACCCAGAATATCTaGCACCATGTAGGGGCGCAG | + |
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Preference number: 4 (lower is better) Translates to: RDIHIYLDSNSIQKRPTHYTQNI*HHVGAQ Trigger: CTGCGCCCCTACATGGTGTCAGATATTCTGGGTGTA...GTGGGTAGGTCTCTTTTGGATGGAGTTGGAATCCAGGTATATATGAATATCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CCA 90 bp | TACCTGGATTCCAACTCCATCCAAAAGAGACCTACCCACAACAGTCTGAGCCAAGAATGGTGTAGTCTTTaGCTGTTGTTGAGTTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: YLDSNSIQKRPTHNSLSQEWCSL*LLLSFS Trigger: GGAGAAACTCAACAACAGCCAAAGACTACACCATTC...TTGGCTCAGACTGTTGTGGGTAGGTCTCTTTTGGATGGAGTTGGAATCCAGGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CCA 90 bp | TATTCATATATACCTGGATTCCAACTCCATCCAAAAGAGACCTACCCACAACAGAGGCTCTCAGAGCTGTaGGGAGGATTTCTTAACTTG | + |
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Preference number: 4 (lower is better) Translates to: YSYIPGFQLHPKETYPQQRLSEL*GGFLNL Trigger: CAAGTTAAGAAATCCTCCCCACAGCTCTGAGAGCCT...CTGTTGTGGGTAGGTCTCTTTTGGATGGAGTTGGAATCCAGGTATATATGAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CCA 90 bp | TATTCATATATACCTGGATTCCAACTCCATCCAAAAGAGACCTACCCACAACAGTCCTTTGTGTCTTCCTaGCTCCTCTTGTGCTCAATA | + |
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Preference number: 4 (lower is better) Translates to: YSYIPGFQLHPKETYPQQSFVSS*LLLCSI Trigger: TATTGAGCACAAGAGGAGCCAGGAAGACACAAAGGA...CTGTTGTGGGTAGGTCTCTTTTGGATGGAGTTGGAATCCAGGTATATATGAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CCA 90 bp | CCTAACACAGCAAGAGATATTCATATATACCTGGATTCCAACTCCATCCAAAAGCCAAGGAACTGTACTTaGACTTGTATTGACACAGGC | + |
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Preference number: 4 (lower is better) Translates to: PNTARDIHIYLDSNSIQKPRNCT*TCIDTG Trigger: GCCTGTGTCAATACAAGTCCAAGTACAGTTCCTTGG...CTTTTGGATGGAGTTGGAATCCAGGTATATATGAATATCTCTTGCTGTGTTAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CCA 90 bp | AAGAATCACATATATTTACACTGTGGACCTAAGATATACCTAACACAGCAAGAGCTTCAGCCAGTCTTCTaGCATGGTTCACATAATCCA | + |
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Preference number: 4 (lower is better) Translates to: KNHIYLHCGPKIYLTQQELQPVF*HGSHNP Trigger: TGGATTATGTGAACCATGCCAGAAGACTGGCTGAAG...CTCTTGCTGTGTTAGGTATATCTTAGGTCCACAGTGTAAATATATGTGATTCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS GCA 90 bp | GTGTCTTCCTGGCTCCTCTTGTGCTCAATAATCTGTTGGAGCTGGTaGCCAGCGTATTCTGGCTTGGTGGTCAGTGGGCCAGCTGGAACA | + |
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Preference number: 5 (lower is better) Translates to: VSSWLLLCSIICWSW*PAYSGLVVSGPAGT Trigger: TGTTCCAGCTGGCCCACTGACCACCAAGCCAGAATACGCTGGGCACCAGCTCCAACAGATTATTGAGCACAAGAGGAGCCAGGAAGACAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CCA 90 bp | CCTCTTGTGCTCAATAATCTGTTGGAGCTGGTGCCCAGCGTATTCTaGCTTGGTGGTCAGTGGGCCAGCTGGAACAGCTACACCCAGAAT | + |
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Preference number: 5 (lower is better) Translates to: PLVLNNLLELVPSVF*LGGQWASWNSYTQN Trigger: ATTCTGGGTGTAGCTGTTCCAGCTGGCCCACTGACCACCAAGCCAGAATACGCTGGGCACCAGCTCCAACAGATTATTGAGCACAAGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CCA 90 bp | TTTGTGTCTTCCTGGCTCCTCTTGTGCTCAATAATCTGTTGGAGCTaGTGCCCAGCGTATTCTGGCTTGGTGGTCAGTGGGCCAGCTGGA | + |
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Preference number: 5 (lower is better) Translates to: FVSSWLLLCSIICWS*CPAYSGLVVSGPAG Trigger: TCCAGCTGGCCCACTGACCACCAAGCCAGAATACGCTGGGCACCAGCTCCAACAGATTATTGAGCACAAGAGGAGCCAGGAAGACACAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CCA 90 bp | TTCTCCTTTGTGTCTTCCTGGCTCCTCTTGTGCTCAATAATCTGTTaGAGCTGGTGCCCAGCGTATTCTGGCTTGGTGGTCAGTGGGCCA | + |
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Preference number: 5 (lower is better) Translates to: FSFVSSWLLLCSIIC*SWCPAYSGLVVSGP Trigger: TGGCCCACTGACCACCAAGCCAGAATACGCTGGGCACCAGCTCCAACAGATTATTGAGCACAAGAGGAGCCAGGAAGACACAAAGGAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CAA 90 bp | TCTGAAATAAGGTCACTAATGGCTATCATCACTGTCCTCTGCCCCAGTCTTTCCCCAGCGTATTCTGGCTaGGTGGTCAGTGGGCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: SEIRSLMAIITVLCPSLSPAYSG*VVSGPA Trigger: AGCTGGCCCACTGACCACCAAGCCAGAATACGCTGG...GGAAAGACTGGGGCAGAGGACAGTGATGATAGCCATTAGTGACCTTATTTCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CCA 90 bp | CTTCCCCACTCTCCATACCTGTCCAGTCATCTTCAGCCAGTCTTCTaGCATGGTTCACATAATCCAACCGCTTGGATTTCTGCAGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: LPHSPYLSSHLQPVF*HGSHNPTAWISAAP Trigger: TGGAGCTGCAGAAATCCAAGCGGTTGGATTATGTGAACCATGCCAGAAGACTGGCTGAAGATGACTGGACAGGTATGGAGAGTGGGGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CCA 90 bp | CCATTCTCAGAAGCCTTGTGTGTGAGTTTCTCCTTTGTGTCTTCCTaGCTCCTCTTGTGCTCAATAATCTGTTGGAGCTGGTGCCCAGCG | + |
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Preference number: 5 (lower is better) Translates to: PFSEALCVSFSFVSS*LLLCSIICWSWCPA Trigger: CGCTGGGCACCAGCTCCAACAGATTATTGAGCACAAGAGGAGCCAGGAAGACACAAAGGAGAAACTCACACACAAGGCTTCTGAGAATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CAA 90 bp | ATACCTGGATTCCAACTCCATCCAAAAGAGACCTACCCACAACAGTCTGAGCCAGTGCTCAATAATCTGTaGGAGCTGGTGCCCAGCGTA | + |
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Preference number: 5 (lower is better) Translates to: IPGFQLHPKETYPQQSEPVLNNL*ELVPSV Trigger: TACGCTGGGCACCAGCTCCAACAGATTATTGAGCAC...TGGCTCAGACTGTTGTGGGTAGGTCTCTTTTGGATGGAGTTGGAATCCAGGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CAA 90 bp | TACCCACAACAGTCTGAGCCAACATTCCAGACAGGGGGCAACCTGGGTTTGGAATGTGCTGTTCAGTTCTaGAGACACAGAAAAGCTACT | + |
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Preference number: 5 (lower is better) Translates to: YPQQSEPTFQTGGNLGLECAVQF*RHRKAT Trigger: AGTAGCTTTTCTGTGTCTCAAGAACTGAACAGCACA...TTCCAAACCCAGGTTGCCCCCTGTCTGGAATGTTGGCTCAGACTGTTGTGGGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CAA 90 bp | AACTCCATCCAAAAGAGACCTACCCACAACAGTCTGAGCCAACATTCCAGACAGCCATTCTCAGAAGCCTaGTGTGTGAGTTTCTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: NSIQKRPTHNSLSQHSRQPFSEA*CVSFSF Trigger: AAAGGAGAAACTCACACACAAGGCTTCTGAGAATGG...CTGTCTGGAATGTTGGCTCAGACTGTTGTGGGTAGGTCTCTTTTGGATGGAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS GCA 90 bp | ATAAGGGCTCTTTTCCCAACAGGACACACAACCACAATCCATTCTTaGCCCAAATCTGAAGGGACGTCAATTAACCACTCAGAAAGCATC | + |
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Preference number: 5 (lower is better) Translates to: IRALFPTGHTTTIHS*PKSEGTSINHSESI Trigger: GATGCTTTCTGAGTGGTTAATTGACGTCCCTTCAGATTTGGGGCAAGAATGGATTGTGGTTGTGTGTCCTGTTGGGAAAAGAGCCCTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CAA 90 bp | CATTCCAGACAGGGGGCAACCTGGGTTTGGAAAGAATGCTCTGAAATAAGGTCACTTCTTCTGGTAACTTaGAATGCATCCAGTAGAATC | + |
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Preference number: 5 (lower is better) Translates to: HSRQGATWVWKECSEIRSLLLVT*NASSRI Trigger: GATTCTACTGGATGCATTCAAAGTTACCAGAAGAAG...TGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGTTGCCCCCTGTCTGGAATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CAA 90 bp | ACCTGGGTTTGGAAAGAATGCTCTGAAATAAGGTCACTAATGGCTATCATCACTAGTCTTTGGCTGTTGTaGAGTTTCTCCTGTTGCCTC | + |
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Preference number: 5 (lower is better) Translates to: TWVWKECSEIRSLMAIITSLWLL*SFSCCL Trigger: GAGGCAACAGGAGAAACTCAACAACAGCCAAAGACT...AGTGATGATAGCCATTAGTGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CAA 90 bp | CATTCCAGACAGGGGGCAACCTGGGTTTGGAAAGAATGCTCTGAAATAAGGTCATTAAAAGGATTAATCTaGGTTTTCTCTCCAAGCCCT | + |
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Preference number: 5 (lower is better) Translates to: HSRQGATWVWKECSEIRSLKGLI*VFSPSP Trigger: AGGGCTTGGAGAGAAAACCAAGATTAATCCTTTTAA...TGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGTTGCCCCCTGTCTGGAATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CAA 90 bp | ACACAGCAAGAGATATTCATATATACCTGGATTCCAACTCCATCCAAAAGAGACGGAGGATTTCTTAACTaGGGAGTAGACAGGTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: TQQEIFIYTWIPTPSKRDGGFLN*GVDRCS Trigger: GGAGCACCTGTCTACTCCCAAGTTAAGAAATCCTCC...GTCTCTTTTGGATGGAGTTGGAATCCAGGTATATATGAATATCTCTTGCTGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS-3UTR CAA 90 bp | GCAACCTGGGTTTGGAAAGAATGCTCTGAAATAAGGTCACTAATGGCTATCATCCGTTTTGGTAACTTCTaGCTAGGGTCTATGTCCATT | + |
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Preference number: 5 (lower is better) Translates to: ATWVWKECSEIRSLMAIIRFGNF*LGSMSI Trigger: AATGGACATAGACCCTAGCAAGAAGTTACCAAAACG...GATGATAGCCATTAGTGACCTTATTTCAGAGCATTCTTTCCAAACCCAGGTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS GCA 90 bp | ACATCACATCCAAAACATAGTATGTCTGATTCACCTCACTGTAAATaGAATCCAGAATGGTGTAGTCTTTGGCTGTTGTTGAGTTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: TSHPKHSMSDSPHCK*NPEWCSLWLLLSFS Trigger: GGAGAAACTCAACAACAGCCAAAGACTACACCATTCTGGATTGCATTTACAGTGAGGTGAATCAGACATACTATGTTTTGGATGTGATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CCA 72 bp | TCTGTTGGAGCTGGTGCCCAGCGTATTCTGGCTTGGTaGTCAGTGGGCCAGCTGGAACAGCTACACCCAGAA | + |
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Preference number: 6 (lower is better) Translates to: SVGAGAQRILAW*SVGQLEQLHPE Trigger: TTCTGGGTGTAGCTGTTCCAGCTGGCCCACTGACCACCAAGCCAGAATACGCTGGGCACCAGCTCCAACAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CCA 72 bp | CCAGTCTTCTGGCATGGTTCACATAATCCAACCGCTTaGATTTCTGCAGCTCCAGTAGCTGGCGCCGCCGCT | + |
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Preference number: 6 (lower is better) Translates to: PVFWHGSHNPTA*ISAAPVAGAAA Trigger: AGCGGCGGCGCCAGCTACTGGAGCTGCAGAAATCCAAGCGGTTGGATTATGTGAACCATGCCAGAAGACTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CAA 72 bp | ATAATCTGTTGGAGCTGGTGCCCAGCGTATTCTGGCTaGGTGGTCAGTGGGCCAGCTGGAACAGCTACACCC | + |
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Preference number: 6 (lower is better) Translates to: IICWSWCPAYSG*VVSGPAGTATP Trigger: GGGTGTAGCTGTTCCAGCTGGCCCACTGACCACCAAGCCAGAATACGCTGGGCACCAGCTCCAACAGATTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS GCA 72 bp | TGGCTCCTCTTGTGCTCAATAATCTGTTGGAGCTGGTaGCCAGCGTATTCTGGCTTGGTGGTCAGTGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: WLLLCSIICWSW*PAYSGLVVSGP Trigger: TGGCCCACTGACCACCAAGCCAGAATACGCTGGGCACCAGCTCCAACAGATTATTGAGCACAAGAGGAGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CCA 72 bp | TCCTGGCTCCTCTTGTGCTCAATAATCTGTTGGAGCTaGTGCCCAGCGTATTCTGGCTTGGTGGTCAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: SWLLLCSIICWS*CPAYSGLVVSG Trigger: CCCACTGACCACCAAGCCAGAATACGCTGGGCACCAGCTCCAACAGATTATTGAGCACAAGAGGAGCCAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CAA 90 bp | TTTCTCCTTTGTGTCTTCCTGGCTCCTCTTGTGCTCAATAATCTGTaGGAGCTGGTGCCCAGCGTATTCTGGCTTGGTGGTCAGTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: FLLCVFLAPLVLNNL*ELVPSVFWLGGQWA Trigger: GGCCCACTGACCACCAAGCCAGAATACGCTGGGCACCAGCTCCAACAGATTATTGAGCACAAGAGGAGCCAGGAAGACACAAAGGAGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CAA 90 bp | TTGTGCTCAATAATCTGTTGGAGCTGGTGCCCAGCGTATTCTGGCTaGGTGGTCAGTGGGCCAGCTGGAACAGCTACACCCAGAATATCT | + |
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Preference number: 6 (lower is better) Translates to: LCSIICWSWCPAYSG*VVSGPAGTATPRIS Trigger: AGATATTCTGGGTGTAGCTGTTCCAGCTGGCCCACTGACCACCAAGCCAGAATACGCTGGGCACCAGCTCCAACAGATTATTGAGCACAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS TCA 72 bp | AATGCAATCCAGAATGGTGTAGTCTTTGGCTGTTGTTaGGTTTCTCCTGTTGCCTCCGGGCAGAAGGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: NAIQNGVVFGCC*VSPVASGQKGR Trigger: TCTTCCCTTCTGCCCGGAGGCAACAGGAGAAACTCAACAACAGCCAAAGACTACACCATTCTGGATTGCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CCA 72 bp | TCTCCATACCTGTCCAGTCATCTTCAGCCAGTCTTCTaGCATGGTTCACATAATCCAACCGCTTGGATTTCT | + |
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Preference number: 6 (lower is better) Translates to: SPYLSSHLQPVF*HGSHNPTAWIS Trigger: AGAAATCCAAGCGGTTGGATTATGTGAACCATGCCAGAAGACTGGCTGAAGATGACTGGACAGGTATGGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS GCA 72 bp | CTTTTCCCAACAGGACACACAACCACAATCCATTCTTaGCCCAAATCTGAAGGGACGTCAATTAACCACTCA | + |
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Preference number: 6 (lower is better) Translates to: LFPTGHTTTIHS*PKSEGTSINHS Trigger: TGAGTGGTTAATTGACGTCCCTTCAGATTTGGGGCAAGAATGGATTGTGGTTGTGTGTCCTGTTGGGAAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CAA 72 bp | TGGTTTTCTCTCCAAGCCCTTCTTCTTCTGGTAACTTaGAATGCATCCAGTAGAATCGGAAATCAGTCTGAC | + |
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Preference number: 6 (lower is better) Translates to: WFSLQALLLLVT*NASSRIGNQSD Trigger: GTCAGACTGATTTCCGATTCTACTGGATGCATTCAAAGTTACCAGAAGAAGAAGGGCTTGGAGAGAAAACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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| CDS CCA 72 bp | ATGTCTGATTCACCTCACTGTAAATGCAATCCAGAATaGTGTAGTCTTTGGCTGTTGTTGAGTTTCTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: MSDSPHCKCNPE*CSLWLLLSFSC Trigger: ACAGGAGAAACTCAACAACAGCCAAAGACTACACCATTCTGGATTGCATTTACAGTGAGGTGAATCAGACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068856.5 |
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