Pregenerated sensors for SNU13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063480Ensembl transcript IDs: ENSMUST00000080622.9
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGTTTGCAGATGAAAGTATACACTGTCCCTGGCTTAAGTTTCTCCTaGTTCTTCCTGTTGTTAAATGGTGACATTCTGCCTTTCACCTGT | + |
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Preference number: 1 (lower is better) Translates to: SLQMKVYTVPGLSFS*FFLLLNGDILPFTC Trigger: ACAGGTGAAAGGCAGAATGTCACCATTTAACAACAGGAAGAACCAGGAGAAACTTAAGCCAGGGACAGTGTATACTTTCATCTGCAAACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR TCA 90 bp | GACAGTCTGCACAAGAGAATTTTAAACTACCAAGTCACTTATAGGTaGCAACTTTACAAACTCTTAGTGAAGAGTTTAAGTGGGAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: DSLHKRILNYQVTYR*QLYKLLVKSLSGRE Trigger: CTCTCTCCCACTTAAACTCTTCACTAAGAGTTTGTAAAGTTGTCACCTATAAGTGACTTGGTAGTTTAAAATTCTCTTGTGCAGACTGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR-3UTR TCA 90 bp | AGCACAAGAGGCAGGGGAGGTGGCATGCTACTACTGCCATCTAGTGGGCAGAGGGAGGGAGAATACACCTaGCCCACGCTGTGGGAAGAA | + |
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Preference number: 2 (lower is better) Translates to: STRGRGGGMLLLPSSGQREGEYT*PTLWEE Trigger: TTCTTCCCACAGCGTGGGTCAGGTGTATTCTCCCTC...CCTCTGCCCACTAGATGGCAGTAGTAGCATGCCACCTCCCCTGCCTCTTGTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR CAA 90 bp | AGGGACCAGGGTCACTGTCATCCTACCCTGCGCAGTGGAATAAGTTaGCAGATGAAAGTATACACTGTCCCTGGCTTAAGTTTCTCCTGG | + |
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Preference number: 2 (lower is better) Translates to: RDQGHCHPTLRSGIS*QMKVYTVPGLSFSW Trigger: CCAGGAGAAACTTAAGCCAGGGACAGTGTATACTTTCATCTGCAAACTTATTCCACTGCGCAGGGTAGGATGACAGTGACCCTGGTCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR CAA 90 bp | AGGATGTTTCCTGCTAGCACTGTCTCTGCTGTAAGTTCCAGCAAATaGCCACGATCTCCACAGAATCCCTTTGTACTGATACTGCCCCAG | + |
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Preference number: 2 (lower is better) Translates to: RMFPASTVSAVSSSK*PRSPQNPFVLILPQ Trigger: CTGGGGCAGTATCAGTACAAAGGGATTCTGTGGAGATCGTGGCAATTTGCTGGAACTTACAGCAGAGACAGTGCTAGCAGGAAACATCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR CAA 90 bp | AAAGTATACACTGTCCCTGGCTTAAGTTTCTCCTGGTTCTTCCTGTaGTTAAATGGTGACATTCTGCCTTTCACCTGTCCTAGCTATCAT | + |
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Preference number: 2 (lower is better) Translates to: KVYTVPGLSFSWFFL*LNGDILPFTCPSYH Trigger: ATGATAGCTAGGACAGGTGAAAGGCAGAATGTCACCATTTAACAACAGGAAGAACCAGGAGAAACTTAAGCCAGGGACAGTGTATACTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR-3UTR TCA 90 bp | AGTGGAATAAGTTTGCAGATGAAAGTATACACTGTCCCTGGCTTAAGTTTCTCCCCTGTTGTTAAATGGTaGCATTCTGCCTTTCACCTG | + |
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Preference number: 2 (lower is better) Translates to: SGISLQMKVYTVPGLSFSPVVKW*HSAFHL Trigger: CAGGTGAAAGGCAGAATGTCACCATTTAACAACAGG...GGAGAAACTTAAGCCAGGGACAGTGTATACTTTCATCTGCAAACTTATTCCACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR-3UTR CCA 90 bp | CAAAGGAAGTTCCTCAGTGTCAGTAACATTTATGGAGCTCTTATATCAAAGGCAAGTATACACTGTCCCTaGCTTAAGTTTCTCCTGGTT | + |
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Preference number: 2 (lower is better) Translates to: QRKFLSVSNIYGALISKASIHCP*LKFLLV Trigger: AACCAGGAGAAACTTAAGCCAGGGACAGTGTATACT...TGCCTTTGATATAAGAGCTCCATAAATGTTACTGACACTGAGGAACTTCCTTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR-3UTR CCA 90 bp | CAAAGGAAGTTCCTCAGTGTCAGTAACATTTATGGAGCTCTTATATCAAAGGCAGGCTTAAGTTTCTCCTaGTTCTTCCTGTTGTTAAAT | + |
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Preference number: 2 (lower is better) Translates to: QRKFLSVSNIYGALISKAGLSFS*FFLLLN Trigger: ATTTAACAACAGGAAGAACCAGGAGAAACTTAAGCC...TGCCTTTGATATAAGAGCTCCATAAATGTTACTGACACTGAGGAACTTCCTTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR CCA 72 bp | AGCACACATAGGGGGCACAAAGTAAAACAGCTGGACTaGGGACAGAGCACTTCTGGAGCCCTCAGCTTGATT | + |
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Preference number: 3 (lower is better) Translates to: STHRGHKVKQLD*GQSTSGALSLI Trigger: AATCAAGCTGAGGGCTCCAGAAGTGCTCTGTCCCCAGTCCAGCTGTTTTACTTTGTGCCCCCTATGTGTGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR TCA 72 bp | GCATGCTACTACTGCCATCTAGTGGGCAGAGGCCAGTaGTGTCACCAAGCACACTTATACCAACATAGGGTG | + |
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Preference number: 3 (lower is better) Translates to: ACYYCHLVGRGQ*CHQAHLYQHRV Trigger: CACCCTATGTTGGTATAAGTGTGCTTGGTGACATCACTGGCCTCTGCCCACTAGATGGCAGTAGTAGCATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR TCA 72 bp | TGGGCCTCAGACGCCCTCATCTTCAAGGACACTTCCTaGTGGAGTGGGAACTCTGGCCTGACTAAAAAGAAA | + |
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Preference number: 3 (lower is better) Translates to: WASDALIFKDTS*WSGNSGLTKKK Trigger: TTTCTTTTTAGTCAGGCCAGAGTTCCCACTCCATCAGGAAGTGTCCTTGAAGATGAGGGCGTCTGAGGCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR-3UTR CAA 90 bp | ATGGGCCTCAGACGCCCTCATCTTCAAGGACACTTCCTGATGGAGTGGGAACTCCGCAGTGGAATAAGTTaGCAGATGAAAGTATACACT | + |
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Preference number: 3 (lower is better) Translates to: MGLRRPHLQGHFLMEWELRSGIS*QMKVYT Trigger: AGTGTATACTTTCATCTGCAAACTTATTCCACTGCG...GAGTTCCCACTCCATCAGGAAGTGTCCTTGAAGATGAGGGCGTCTGAGGCCCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR TCA 72 bp | ATGTTATCACTTTCTTCATGTGAGGGAGAATACACCTaGCCCACGCTGTGGGAAGAACAGGATAAGGGCTCC | + |
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Preference number: 3 (lower is better) Translates to: MLSLSSCEGEYT*PTLWEEQDKGS Trigger: GGAGCCCTTATCCTGTTCTTCCCACAGCGTGGGTCAGGTGTATTCTCCCTCACATGAAGAAAGTGATAACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR TCA 72 bp | GCAAATTGCCACGATCTCCACAGAATCCCTTTGTACTaGTACTGCCCCAGATATGGGAGAATATCAGACTAC | + |
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Preference number: 3 (lower is better) Translates to: ANCHDLHRIPLY*YCPRYGRISDY Trigger: GTAGTCTGATATTCTCCCATATCTGGGGCAGTATCAGTACAAAGGGATTCTGTGGAGATCGTGGCAATTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR TCA 72 bp | TTTAGATTAGCCAGAGAACGTATAGAGAGAACTACTTaGACCCCTAACACCCACAAACACCCAAACTGGCCA | + |
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Preference number: 3 (lower is better) Translates to: FRLARERIERTT*TPNTHKHPNWP Trigger: TGGCCAGTTTGGGTGTTTGTGGGTGTTAGGGGTTCAAGTAGTTCTCTCTATACGTTCTCTGGCTAATCTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR CCA 72 bp | ATGAAAGTATACACTGTCCCTGGCTTAAGTTTCTCCTaGTTCTTCCTGTTGTTAAATGGTGACATTCTGCCT | + |
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Preference number: 3 (lower is better) Translates to: MKVYTVPGLSFS*FFLLLNGDILP Trigger: AGGCAGAATGTCACCATTTAACAACAGGAAGAACCAGGAGAAACTTAAGCCAGGGACAGTGTATACTTTCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR CCA 72 bp | TGGAATAAGTTTGCAGATGAAAGTATACACTGTCCCTaGCTTAAGTTTCTCCTGGTTCTTCCTGTTGTTAAA | + |
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Preference number: 3 (lower is better) Translates to: WNKFADESIHCP*LKFLLVLPVVK Trigger: TTTAACAACAGGAAGAACCAGGAGAAACTTAAGCCAGGGACAGTGTATACTTTCATCTGCAAACTTATTCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR CCA 72 bp | ACTACATACATCAAAAACACACAGGACATTAATAAATaGCTCCCGGACATAGGCCCAACATCAAATTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: TTYIKNTQDINK*LPDIGPTSNFF Trigger: GAAGAAATTTGATGTTGGGCCTATGTCCGGGAGCCATTTATTAATGTCCTGTGTGTTTTTGATGTATGTAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR TCA 72 bp | TCAGTGTTAGGAAATCCTAGAATGATAACACTCCAGTaGCAGTCTGCACAAGAGAATTTTAAACTACCAAGT | + |
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Preference number: 3 (lower is better) Translates to: SVLGNPRMITLQ*QSAQENFKLPS Trigger: ACTTGGTAGTTTAAAATTCTCTTGTGCAGACTGTCACTGGAGTGTTATCATTCTAGGATTTCCTAACACTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| CDS-3UTR TCA 90 bp | CCTGGCTTAAGTTTCTCCTGGTTCTTCCTGTTGTTAAATGGTGACATTCTGCCTCCAGCAGCTTCTTGGTaGGGTGGGCATCTGCGAGGG | + |
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Preference number: 4 (lower is better) Translates to: PGLSFSWFFLLLNGDILPPAASW*GGHLRG Trigger: CCCTCGCAGATGCCCACCTCACCAAGAAGCTGCTGG...AGGCAGAATGTCACCATTTAACAACAGGAAGAACCAGGAGAAACTTAAGCCAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| CDS-3UTR CCA 90 bp | ATAAGACATCCCCATTTACCAAGGAGAGGATGTTTCCTGCTAGCACTGTCTCTGAGAACAGGCGATGACTaGCCTGGAGACGCCACACGC | + |
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Preference number: 4 (lower is better) Translates to: IRHPHLPRRGCFLLALSLRTGDD*PGDATR Trigger: GCGTGTGGCGTCTCCAGGCCAGTCATCGCCTGTTCT...CAGAGACAGTGCTAGCAGGAAACATCCTCTCCTTGGTAAATGGGGATGTCTTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| CDS-3UTR TCA 90 bp | ATGGGCCTCAGACGCCCTCATCTTCAAGGACACTTCCTGATGGAGTGGGAACTCCTGCTTGTAGTTACATaGCTGTTGAACAAGGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: MGLRRPHLQGHFLMEWELLLVVT*LLNKVQ Trigger: CTGGACCTTGTTCAACAGTCATGTAACTACAAGCAG...GAGTTCCCACTCCATCAGGAAGTGTCCTTGAAGATGAGGGCGTCTGAGGCCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| CDS-3UTR GCA 90 bp | TCAAAACACAATGTTTTTAGTCTTGGAGAGAGGCAGAGTTCAGGCCAACCTGGTCACAGCAGAGGGAGGTaGAGGATGATCTCCAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: SKHNVFSLGERQSSGQPGHSRGR*RMISKG Trigger: GCCCTTGGAGATCATCCTGCACCTCCCTCTGCTGTG...ACCAGGTTGGCCTGAACTCTGCCTCTCTCCAAGACTAAAAACATTGTGTTTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR CAA 72 bp | GGTCACTGTCATCCTACCCTGCGCAGTGGAATAAGTTaGCAGATGAAAGTATACACTGTCCCTGGCTTAAGT | + |
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Preference number: 4 (lower is better) Translates to: GHCHPTLRSGIS*QMKVYTVPGLS Trigger: ACTTAAGCCAGGGACAGTGTATACTTTCATCTGCAAACTTATTCCACTGCGCAGGGTAGGATGACAGTGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| 3UTR CAA 72 bp | CCTGCTAGCACTGTCTCTGCTGTAAGTTCCAGCAAATaGCCACGATCTCCACAGAATCCCTTTGTACTGATA | + |
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Preference number: 4 (lower is better) Translates to: PASTVSAVSSSK*PRSPQNPFVLI Trigger: TATCAGTACAAAGGGATTCTGTGGAGATCGTGGCAATTTGCTGGAACTTACAGCAGAGACAGTGCTAGCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| CDS-3UTR CCA 90 bp | CATAGGCCCAACATCAAATTTCTTCAAATGATAAGGGGAGGGAGAGACTGCTACTTTTGGTGGCTTCATTaGCTCCTTTCCGAAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: HRPNIKFLQMIRGGRDCYFWWLH*LLSEAA Trigger: AGCAGCTTCGGAAAGGAGCCAATGAAGCCACCAAAA...GTAGCAGTCTCTCCCTCCCCTTATCATTTGAAGAAATTTGATGTTGGGCCTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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| CDS TCA 72 bp | TACATGACTGTTGAACAAGGTCCAGCAGCTTCTTGGTaGGGTGGGCATCTGCGAGGGGATAGGCCTTCGGAT | + |
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Preference number: 6 (lower is better) Translates to: YMTVEQGPAASW*GGHLRGDRPSD Trigger: ATCCGAAGGCCTATCCCCTCGCAGATGCCCACCTCACCAAGAAGCTGCTGGACCTTGTTCAACAGTCATGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080622.9 |
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