Pregenerated sensors for SNTN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044772Ensembl transcript IDs: ENSMUST00000061045.3
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CACTCAGTAGGAGATGCCTTTAAGTTGCTCATTACTCATCAGAAGTaGTATCCAGTTTATCGTGTCACAAACCATATCATTCAAACATTT | + |
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Preference number: 1 (lower is better) Translates to: HSVGDAFKLLITHQK*YPVYRVTNHIIQTF Trigger: AAATGTTTGAATGATATGGTTTGTGACACGATAAACTGGATACCACTTCTGATGAGTAATGAGCAACTTAAAGGCATCTCCTACTGAGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| 3UTR GCA 90 bp | CATGCACAATGTTGCATAAACATGGACACAGAAATTATTGTTGTATaGCGTATTTTTCTTCTGGAATTGTGTAAACATGAGAAAGGGAAG | + |
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Preference number: 1 (lower is better) Translates to: HAQCCINMDTEIIVV*RIFLLELCKHEKGK Trigger: CTTCCCTTTCTCATGTTTACACAATTCCAGAAGAAAAATACGGCATACAACAATAATTTCTGTGTCCATGTTTATGCAACATTGTGCATG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| 3UTR GCA 90 bp | TCTGGTTGCCATATGTACATGTGTAGTTACCATCACACAAATACATaGACAATGTTGCATAAACATGGACACAGAAATTATTGTTGTATG | + |
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Preference number: 1 (lower is better) Translates to: SGCHMYMCSYHHTNT*TMLHKHGHRNYCCM Trigger: CATACAACAATAATTTCTGTGTCCATGTTTATGCAACATTGTGCATGTATTTGTGTGATGGTAACTACACATGTACATATGGCAACCAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| 3UTR-3UTR GCA 90 bp | TCACTGATCCGCCAGCTTAGCCTCTCAGTGAGCCTCAGGGCAATGAGAACTAAAAGATTGACCTCTGGTTaGCATATGTACATGTGTAGT | + |
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Preference number: 2 (lower is better) Translates to: SLIRQLSLSVSLRAMRTKRLTSG*HMYMCS Trigger: ACTACACATGTACATATGGCAACCAGAGGTCAATCT...TTTAGTTCTCATTGCCCTGAGGCTCACTGAGAGGCTAAGCTGGCGGATCAGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| 3UTR-3UTR TCA 90 bp | ATGTGTAGTTACCATCACACAAATACATGCACAATGTTGCATAAACATGGACACTCATTCAAACATTTCTaGAGAGAGTTGCAGTCCCAC | + |
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Preference number: 2 (lower is better) Translates to: MCSYHHTNTCTMLHKHGHSFKHF*RELQSH Trigger: GTGGGACTGCAACTCTCTTCAGAAATGTTTGAATGA...GTGTCCATGTTTATGCAACATTGTGCATGTATTTGTGTGATGGTAACTACACAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| 3UTR GCA 72 bp | CACAAACCATATCATTCAAACATTTCTGAAGAGAGTTaGAGTCCCACACTTATTACAAACCAGATAGAGACA | + |
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Preference number: 3 (lower is better) Translates to: HKPYHSNISEES*SPTLITNQIET Trigger: TGTCTCTATCTGGTTTGTAATAAGTGTGGGACTGCAACTCTCTTCAGAAATGTTTGAATGATATGGTTTGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| CDS-3UTR TCA 90 bp | ATGTGTAGTTACCATCACACAAATACATGCACAATGTTGCATAAACATGGACACCCTGGGCTCTCCTCTTaGGTGGAGTGCGTGGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: MCSYHHTNTCTMLHKHGHPGLSS*VECVVP Trigger: TGGGACCACGCACTCCACTCAAGAGGAGAGCCCAGG...GTGTCCATGTTTATGCAACATTGTGCATGTATTTGTGTGATGGTAACTACACAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| CDS-3UTR GCA 90 bp | TACAAACCAGATAGAGACACATTTAATGCTGTGGCACATCATTTGTCCATCACAGTGCGTGGTCCCAGGTaGTGTGCATACAGCCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: YKPDRDTFNAVAHHLSITVRGPR*CAYSLP Trigger: TGGGAGGCTGTATGCACAGCACCTGGGACCACGCAC...TGTGATGGACAAATGATGTGCCACAGCATTAAATGTGTCTCTATCTGGTTTGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| CDS-3UTR TCA 90 bp | TTGTGTAAACATGAGAAAGGGAAGGAGTCACCTGGCCATTCGTCACTGCAGTTTGGCTTTTTCCAGATCTaGCCCCTTCTTCAAAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: LCKHEKGKESPGHSSLQFGFFQI*PLLQSF Trigger: AAAGCTTTGAAGAAGGGGTCAGATCTGGAAAAAGCC...AAACTGCAGTGACGAATGGCCAGGTGACTCCTTCCCTTTCTCATGTTTACACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| CDS-3UTR CCA 90 bp | GTGGTATCCAGTTTATCGTGTCACAAACCATATCATTCAAACATTTCTGAAGAGGGGCTTCAGAAGGCCTaGGCTCTCCTCTTGAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: VVSSLSCHKPYHSNISEEGLQKA*ALLLSG Trigger: TCCACTCAAGAGGAGAGCCCAGGCCTTCTGAAGCCC...CTCTTCAGAAATGTTTGAATGATATGGTTTGTGACACGATAAACTGGATACCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| CDS-3UTR TCA 90 bp | GAGTTGCAGTCCCACACTTATTACAAACCAGATAGAGACACATTTAATGCTGTGCATTTTGCTAGGTGCTaGAATGGATGCTGGGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: ELQSHTYYKPDRDTFNAVHFARC*NGCWGF Trigger: GAAGCCCCAGCATCCATTTCAGCACCTAGCAAAATG...CACAGCATTAAATGTGTCTCTATCTGGTTTGTAATAAGTGTGGGACTGCAACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| CDS-3UTR CCA 90 bp | CGTGTCACAAACCATATCATTCAAACATTTCTGAAGAGAGTTGCAGTCCCACACTTTGTAGCAGTTTCTTaGCAGTGGCTTTCCCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: RVTNHIIQTFLKRVAVPHFVAVS*QWLSQV Trigger: AACTTGGGAAAGCCACTGCCAAGAAACTGCTACAAA...GTGTGGGACTGCAACTCTCTTCAGAAATGTTTGAATGATATGGTTTGTGACACG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| CDS-3UTR CAA 90 bp | TTGTGTAAACATGAGAAAGGGAAGGAGTCACCTGGCCATTCGTCACTGCAGTTTCTCAGAAAGGATGTCTaGGTATTTTGGCTTGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: LCKHEKGKESPGHSSLQFLRKDV*VFWLGF Trigger: GAAACCAAGCCAAAATACCAAGACATCCTTTCTGAG...AAACTGCAGTGACGAATGGCCAGGTGACTCCTTCCCTTTCTCATGTTTACACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| CDS-3UTR CAA 90 bp | CCAGTTTATCGTGTCACAAACCATATCATTCAAACATTTCTGAAGAGAGTTGCAGTTTGTAGCAGTTTCTaGGCAGTGGCTTTCCCAAGT | + |
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Preference number: 5 (lower is better) Translates to: PVYRVTNHIIQTFLKRVAVCSSF*AVAFPS Trigger: ACTTGGGAAAGCCACTGCCAAGAAACTGCTACAAAC...TGCAACTCTCTTCAGAAATGTTTGAATGATATGGTTTGTGACACGATAAACTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| CDS-3UTR CAA 90 bp | GTAGTTACCATCACACAAATACATGCACAATGTTGCATAAACATGGACACAGAATCTTGGTATTTTGGCTaGGTTTCTTCTCTCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: VVTITQIHAQCCINMDTESWYFG*VSSLSV Trigger: CACAGAGAGAGAAGAAACCAAGCCAAAATACCAAGA...TTCTGTGTCCATGTTTATGCAACATTGTGCATGTATTTGTGTGATGGTAACTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| CDS-3UTR CAA 90 bp | GTAGTTACCATCACACAAATACATGCACAATGTTGCATAAACATGGACACAGAAACACTTTTAGGCATTTaGCTAGGTGCTGAAATGGAT | + |
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Preference number: 5 (lower is better) Translates to: VVTITQIHAQCCINMDTETLLGI*LGAEMD Trigger: ATCCATTTCAGCACCTAGCAAAATGCCTAAAAGTGT...TTCTGTGTCCATGTTTATGCAACATTGTGCATGTATTTGTGTGATGGTAACTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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| CDS TCA 72 bp | TATTTTCATTCCACATATTTCGTAGCAGATCTGACATaGTGGCAAGGCTCAGGAGCAAGATCACGAAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: YFHSTYFVADLT*WQGSGARSRSP Trigger: AGGACTTCGTGATCTTGCTCCTGAGCCTTGCCATCATGTCAGATCTGCTACGAAATATGTGGAATGAAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061045.3 |
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