RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SNTG1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025909

Ensembl transcript IDs: ENSMUST00000115488.3, ENSMUST00000132064.8, ENSMUST00000140295.8, ENSMUST00000140302.8, ENSMUST00000144593.8, ENSMUST00000191683.6

Found 194 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTGAAGGCTGTCAGGCAGAGCTCAGCATGTCAAGCCAGGTGCTTTaGCTTGCTTGTAGAAGCAGAGCTGACAGCAGCAGTAGTGGCAGC +
Preference number: 1 (lower is better)
Translates to: PEGCQAELSMSSQVL*LACRSRADSSSSGS
Trigger: GCTGCCACTACTGCTGCTGTCAGCTCTGCTTCTACAAGCAAGGCAAAGCACCTGGCTTGACATGCTGAGCTCTGCCTGACAGCCTTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR CCA 90 bp TCTCACACACGGAGAAGGTTTTCTCTGCTCGAGTCCAGTCCCAGGTaGTCACTGGAGGTGACAGGAACCTGTAAAGACAGGAGCCCCTCA +
Preference number: 1 (lower is better)
Translates to: SHTRRRFSLLESSPR*SLEVTGTCKDRSPS
Trigger: TGAGGGGCTCCTGTCTTTACAGGTTCCTGTCACCTCCAGTGACCACCTGGGACTGGACTCGAGCAGAGAAAACCTTCTCCGTGTGTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR CCA 90 bp CACATGCATAGGTCTTGCACTGTATGCGCTCCACTTCAAGAAAGGTaGCTGTTTGGAAGGCTCGTTCCCATTGGGCAAGGTCACTCTCTA +
Preference number: 1 (lower is better)
Translates to: HMHRSCTVCAPLQER*LFGRLVPIGQGHSL
Trigger: TAGAGAGTGACCTTGCCCAATGGGAACGAGCCTTCCAAACAGCCACCTTTCTTGAAGTGGAGCGCATACAGTGCAAGACCTATGCATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR TCA 90 bp GCCTTGCTTGTAGAAGCAGAGCTGACAGCAGCAGTAGTGGCAGCCTaGTTACCTAAAAACAGAGGGTCCAAACAAGCTACTTTGGCAGCA +
Preference number: 1 (lower is better)
Translates to: ALLVEAELTAAVVAA*LPKNRGSKQATLAA
Trigger: TGCTGCCAAAGTAGCTTGTTTGGACCCTCTGTTTTTAGGTAATCAGGCTGCCACTACTGCTGCTGTCAGCTCTGCTTCTACAAGCAAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR GCA 90 bp CCATTAAGTGACTCTCCAACACACATGCATAGGTCTTGCACTGTATaGGCTCCACTTCAAGAAAGGTGGCTGTTTGGAAGGCTCGTTCCC +
Preference number: 1 (lower is better)
Translates to: PLSDSPTHMHRSCTV*APLQERWLFGRLVP
Trigger: GGGAACGAGCCTTCCAAACAGCCACCTTTCTTGAAGTGGAGCGCATACAGTGCAAGACCTATGCATGTGTGTTGGAGAGTCACTTAATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR TCA 90 bp TCTCTAGTTCCTGGCCTTGAGTGCCCACCTCACAATGCACATTTCTaGCTTTTTACCTTCCTAATTCTGAAACAAGCTACCTGCAGCAGC +
Preference number: 1 (lower is better)
Translates to: SLVPGLECPPHNAHF*LFTFLILKQATCSS
Trigger: GCTGCTGCAGGTAGCTTGTTTCAGAATTAGGAAGGTAAAAAGTCAGAAATGTGCATTGTGAGGTGGGCACTCAAGGCCAGGAACTAGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR CCA 90 bp CAGACCATGAGGCCCAGCTCTCTGCAAACAGCACTATATGTGAAATaGAAATTTCACAAAGACACTTGCAGCTTTCTTTCTAAGATTTTA +
Preference number: 1 (lower is better)
Translates to: QTMRPSSLQTALYVK*KFHKDTCSFLSKIL
Trigger: TAAAATCTTAGAAAGAAAGCTGCAAGTGTCTTTGTGAAATTTCCATTTCACATATAGTGCTGTTTGCAGAGAGCTGGGCCTCATGGTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
3UTR TCA 90 bp TCACCTGCGTGTATGTATATGCACCACGTGTGTATCTGGTGCTACTaGGTTCTGAAGCAAGCATTTAATTCTCTAAAAATTGTAGTTTCA +
Preference number: 1 (lower is better)
Translates to: SPACMYMHHVCIWCY*VLKQAFNSLKIVVS
Trigger: TGAAACTACAATTTTTAGAGAATTAAATGCTTGCTTCAGAACTCAGTAGCACCAGATACACACGTGGTGCATATACATACACGCAGGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp AAGGTGGCTGTTTGGAAGGCTCGTTCCCATTGGGCAAGGTCACTCTCTAGCTCCTCTTGGAGGGATTCCTaGTCCCGGGCTTCACACCAG +
Preference number: 2 (lower is better)
Translates to: KVAVWKARSHWARSLSSSSWRDS*SRASHQ
Trigger: CTGGTGTGAAGCCCGGGAGCAGGAATCCCTCCAAGA...GGAGCTAGAGAGTGACCTTGCCCAATGGGAACGAGCCTTCCAAACAGCCACCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR-3UTR CCA 90 bp AAGGTGGCTGTTTGGAAGGCTCGTTCCCATTGGGCAAGGTCACTCTCTAGCTCCGAGTCCAGTCCCAGGTaGTCACTGGAGGTGACAGGA +
Preference number: 2 (lower is better)
Translates to: KVAVWKARSHWARSLSSSESSPR*SLEVTG
Trigger: TCCTGTCACCTCCAGTGACCACCTGGGACTGGACTC...GGAGCTAGAGAGTGACCTTGCCCAATGGGAACGAGCCTTCCAAACAGCCACCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR-3UTR GCA 90 bp AAGGTGGCTGTTTGGAAGGCTCGTTCCCATTGGGCAAGGTCACTCTCTAGCTCCTCCCCACACTCAGACTaGATAGTGAAGCAATGTTTC +
Preference number: 2 (lower is better)
Translates to: KVAVWKARSHWARSLSSSSPHSD*IVKQCF
Trigger: GAAACATTGCTTCACTATGCAGTCTGAGTGTGGGGA...GGAGCTAGAGAGTGACCTTGCCCAATGGGAACGAGCCTTCCAAACAGCCACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR-3UTR CCA 90 bp TCAAGAAAGGTGGCTGTTTGGAAGGCTCGTTCCCATTGGGCAAGGTCACTCTCTGACTTGGTGACAGCATaGTCTCTTCAGGGTGGAAGT +
Preference number: 2 (lower is better)
Translates to: SRKVAVWKARSHWARSLSDLVTA*SLQGGS
Trigger: ACTTCCACCCTGAAGAGACCATGCTGTCACCAAGTC...AGAGAGTGACCTTGCCCAATGGGAACGAGCCTTCCAAACAGCCACCTTTCTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR-3UTR TCA 90 bp AAGCAATGTTTCCGCCGATCCAGCAGGTCACTGTCCTTGAGAACCTTGCACATGTTTACAGATGCCTCCTaGCCTTTCTGCTGCTGGAAT +
Preference number: 2 (lower is better)
Translates to: KQCFRRSSRSLSLRTLHMFTDAS*PFCCWN
Trigger: ATTCCAGCAGCAGAAAGGTCAGGAGGCATCTGTAAA...CATGTGCAAGGTTCTCAAGGACAGTGACCTGCTGGATCGGCGGAAACATTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR-3UTR GCA 90 bp AGCCAGGTGCTTTGCCTTGCTTGTAGAAGCAGAGCTGACAGCAGCAGTAGTGGCACTCTCCAACACACATaGATAGGTCTTGCACTGTAT +
Preference number: 2 (lower is better)
Translates to: SQVLCLACRSRADSSSSGTLQHT*IGLALY
Trigger: ATACAGTGCAAGACCTATGCATGTGTGTTGGAGAGT...GCCACTACTGCTGCTGTCAGCTCTGCTTCTACAAGCAAGGCAAAGCACCTGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR-3UTR CCA 90 bp TACAGATGCCTCCTGACCTTTCTGCTGCTGGAATTGCAGTCTGACTCCATGGTTGACTTGGTGACAGCATaGTCTCTTCAGGGTGGAAGT +
Preference number: 2 (lower is better)
Translates to: YRCLLTFLLLELQSDSMVDLVTA*SLQGGS
Trigger: ACTTCCACCCTGAAGAGACCATGCTGTCACCAAGTC...AACCATGGAGTCAGACTGCAATTCCAGCAGCAGAAAGGTCAGGAGGCATCTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR CAA 90 bp TGCATAGTGAAGCAATGTTTCCGCCGATCCAGCAGGTCACTGTCCTaGAGAACCTTGCACATGATCTCACACACGGAGAAGGTTTTCTCT +
Preference number: 2 (lower is better)
Translates to: CIVKQCFRRSSRSLS*RTLHMISHTEKVFS
Trigger: AGAGAAAACCTTCTCCGTGTGTGAGATCATGTGCAAGGTTCTCAAGGACAGTGACCTGCTGGATCGGCGGAAACATTGCTTCACTATGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR-3UTR TCA 90 bp ACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTATCCTGGTAGGTGGAAGTAGGGAGTaGGTGACCCTGAAGGCTGTC +
Preference number: 2 (lower is better)
Translates to: TLHQSILVTKHDGSCILVGGSRE*VTLKAV
Trigger: GACAGCCTTCAGGGTCACTCACTCCCTACTTCCACC...TACCAGGATACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp TCTCCAACACACATGCATAGGTCTTGCACTGTATGCGCTCCACTTCAAGAAAGGCCTTGTCACCAAACATaGTGGCAGCTGTATCCTGGT +
Preference number: 2 (lower is better)
Translates to: SPTHMHRSCTVCAPLQERPCHQT*WQLYPG
Trigger: ACCAGGATACAGCTGCCATCATGTTTGGTGACAAGG...CCTTTCTTGAAGTGGAGCGCATACAGTGCAAGACCTATGCATGTGTGTTGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR-3UTR GCA 90 bp AGCCTTTGTTGCTGCGTCAAAGCAGATGAAGCCTGTGCTGAAGTCAATAGTGAGTTCTGCTGCTGGAATTaGAGTCTGACTCCATGGTTG +
Preference number: 2 (lower is better)
Translates to: SLCCCVKADEACAEVNSEFCCWN*SLTPWL
Trigger: CAACCATGGAGTCAGACTGCAATTCCAGCAGCAGAA...CTCACTATTGACTTCAGCACAGGCTTCATCTGCTTTGACGCAGCAACAAAGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR-3UTR TCA 90 bp GCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATGCGGTGGAAGTAGGGAGTaGGTGACCCTGAAGGCTGTC +
Preference number: 2 (lower is better)
Translates to: ASCLKADTNRALVKNEECGGSRE*VTLKAV
Trigger: GACAGCCTTCAGGGTCACTCACTCCCTACTTCCACC...GCATTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp GATGATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGATCTAGTTCCTGGCCTTaGGTGCCCACCTCACAATGC +
Preference number: 2 (lower is better)
Translates to: DDCESLCECYNQIQVLERSSSWP*VPTSQC
Trigger: GCATTGTGAGGTGGGCACTCAAGGCCAGGAACTAGA...TCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp ATTTACATACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTAGGTGGAAGTAGGGAGTaGGTGACCCTGAAGGCTGTC +
Preference number: 2 (lower is better)
Translates to: IYILYTNQSLSPNMMAAVGGSRE*VTLKAV
Trigger: GACAGCCTTCAGGGTCACTCACTCCCTACTTCCACC...TACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGTATGTAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp ACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTATCCTGGTACCTTGTCACCAAACATaGTGGCAGCTGTATCCTGGT +
Preference number: 2 (lower is better)
Translates to: TLHQSILVTKHDGSCILVPCHQT*WQLYPG
Trigger: ACCAGGATACAGCTGCCATCATGTTTGGTGACAAGG...TACCAGGATACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp CTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCAGAAGAGATGATAGAGGCACAATGATAGGGCATTaGTTCATGATCTGGCCCAAT +
Preference number: 2 (lower is better)
Translates to: LCGSNKCSGRAFRRDDRGTMIGH*FMIWPN
Trigger: ATTGGGCCAGATCATGAATCAATGCCCTATCATTGT...GCCTCTATCATCTCTTCTGAAAGCTCTGCCACTACACTTGTTGCTGCCACATAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp TACAGATGCCTCCTGACCTTTCTGCTGCTGGAATTGCAGTCTGACTCCATGGTTAGGTGCTTCTGTCTTTaGGGTCATTTGCTTTCATTT +
Preference number: 2 (lower is better)
Translates to: YRCLLTFLLLELQSDSMVRCFCL*GHLLSF
Trigger: AAATGAAAGCAAATGACCTCAAAGACAGAAGCACCT...AACCATGGAGTCAGACTGCAATTCCAGCAGCAGAAAGGTCAGGAGGCATCTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp GATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGAGATGTTCCTGGCCTTGAGTaGCCACCTCACAATGCACAT +
Preference number: 2 (lower is better)
Translates to: DCESLCECYNQIQVLERDVPGLE*PPHNAH
Trigger: ATGTGCATTGTGAGGTGGGCACTCAAGGCCAGGAAC...ATCTCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp AATTCTGCAGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGGGTGGAAGTAGGGAGTaGGTGACCCTGAAGGCTGTC +
Preference number: 2 (lower is better)
Translates to: NSAEYFTVRLNTAGVLILGGSRE*VTLKAV
Trigger: GACAGCCTTCAGGGTCACTCACTCCCTACTTCCACC...CAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCTGCAGAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp TACAGATGCCTCCTGACCTTTCTGCTGCTGGAATTGCAGTCTGACTCCATGGTTGTTTTGTTGTTTGTTTaGTTTGCATGCTACTTGCCT +
Preference number: 2 (lower is better)
Translates to: YRCLLTFLLLELQSDSMVVLLFV*FACYLP
Trigger: AGGCAAGTAGCATGCAAATCAAACAAACAACAAAAC...AACCATGGAGTCAGACTGCAATTCCAGCAGCAGAAAGGTCAGGAGGCATCTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp GTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATCTAGTTCCTGGCCTTaGGTGCCCACCTCACAATGC +
Preference number: 2 (lower is better)
Translates to: VASCLKADTNRALVKNEESSSWP*VPTSQC
Trigger: GCATTGTGAGGTGGGCACTCAAGGCCAGGAACTAGA...TTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp ACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTATCCTGGTATTCTGCTGCTGGAATTaGAGTCTGACTCCATGGTTG +
Preference number: 2 (lower is better)
Translates to: TLHQSILVTKHDGSCILVFCCWN*SLTPWL
Trigger: CAACCATGGAGTCAGACTGCAATTCCAGCAGCAGAA...TACCAGGATACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR-3UTR CCA 90 bp GATGATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGAGACTTGGTGACAGCATaGTCTCTTCAGGGTGGAAGT +
Preference number: 2 (lower is better)
Translates to: DDCESLCECYNQIQVLERDLVTA*SLQGGS
Trigger: ACTTCCACCCTGAAGAGACCATGCTGTCACCAAGTC...TCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp AATTCCAGTTGTTGCCTACTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCGCAGCCTACATCATTTaGCATAGTCAATTACTTTCC +
Preference number: 2 (lower is better)
Translates to: NSSCCLLCGSNKCSGRAFAAYII*HSQLLS
Trigger: GGAAAGTAATTGACTATGTCAAATGATGTAGGCTGC...GAAAGCTCTGCCACTACACTTGTTGCTGCCACATAGTAGGCAACAACTGGAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp AGTTGCAAGACTGAAAATAAAGTTCCCTTGCTTATGTGGCTGAGATCTGCAAAAAATAACAGCAGACCATaGGGCCCAGCTCTCTGCAAA +
Preference number: 2 (lower is better)
Translates to: SCKTENKVPLLMWLRSAKNNSRP*GPALCK
Trigger: TTTGCAGAGAGCTGGGCCTCATGGTCTGCTGTTATT...TTTTGCAGATCTCAGCCACATAAGCAAGGGAACTTTATTTTCAGTCTTGCAACT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
3UTR-3UTR GCA 90 bp GATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGAGATTTCTGCTGCTGGAATTaGAGTCTGACTCCATGGTTG +
Preference number: 2 (lower is better)
Translates to: DCESLCECYNQIQVLERDFCCWN*SLTPWL
Trigger: CAACCATGGAGTCAGACTGCAATTCCAGCAGCAGAA...ATCTCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp GAAGTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGTTCCTGGCCTTGAGTaGCCACCTCACAATGCACAT +
Preference number: 2 (lower is better)
Translates to: EVASCLKADTNRALVKNEVPGLE*PPHNAH
Trigger: ATGTGCATTGTGAGGTGGGCACTCAAGGCCAGGAAC...TTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTACTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp GTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAAGTTCCTGGCCTTGAGTaGCCACCTCACAATGCACAT +
Preference number: 2 (lower is better)
Translates to: VASCLKADTNRALVKNEEVPGLE*PPHNAH
Trigger: ATGTGCATTGTGAGGTGGGCACTCAAGGCCAGGAAC...TTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp TTGTATCTGGTCTGCACATCTAAAAGAATTCAAGAAAATGCCACAGTGAAATTGACATCCGACTGTGTGTaGACGTGCACGCACACACTC +
Preference number: 2 (lower is better)
Translates to: LYLVCTSKRIQENATVKLTSDCV*TCTHTL
Trigger: GAGTGTGTGCGTGCACGTGCACACACAGTCGGATGT...CAATTTCACTGTGGCATTTTCTTGAATTCTTTTAGATGTGCAGACCAGATACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
3UTR-3UTR CCA 90 bp GCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATGCGACTTGGTGACAGCATaGTCTCTTCAGGGTGGAAGT +
Preference number: 2 (lower is better)
Translates to: ASCLKADTNRALVKNEECDLVTA*SLQGGS
Trigger: ACTTCCACCCTGAAGAGACCATGCTGTCACCAAGTC...GCATTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp AATTCTGCAGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGCCATGGTTGACTTGGTaGCAGCATGGTCTCTTCAGG +
Preference number: 2 (lower is better)
Translates to: NSAEYFTVRLNTAGVLILPWLTW*QHGLFR
Trigger: CCTGAAGAGACCATGCTGTCACCAAGTCAACCATGG...CAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCTGCAGAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp GCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATGCTTTACAGATGCCTCCTaGCCTTTCTGCTGCTGGAAT +
Preference number: 2 (lower is better)
Translates to: ASCLKADTNRALVKNEECFTDAS*PFCCWN
Trigger: ATTCCAGCAGCAGAAAGGTCAGGAGGCATCTGTAAA...GCATTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp GATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGAGATCTGAAACAAGCTACCTaGAGCAGCCTACATCATTTG +
Preference number: 2 (lower is better)
Translates to: DCESLCECYNQIQVLERDLKQAT*SSLHHL
Trigger: CAAATGATGTAGGCTGCTGCAGGTAGCTTGTTTCAG...ATCTCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp GATGATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGACTGAAACAAGCTACCTaGAGCAGCCTACATCATTTG +
Preference number: 2 (lower is better)
Translates to: DDCESLCECYNQIQVLERLKQAT*SSLHHL
Trigger: CAAATGATGTAGGCTGCTGCAGGTAGCTTGTTTCAG...TCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp GTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATTTACAGATGCCTCCTaGCCTTTCTGCTGCTGGAAT +
Preference number: 2 (lower is better)
Translates to: VASCLKADTNRALVKNEEFTDAS*PFCCWN
Trigger: ATTCCAGCAGCAGAAAGGTCAGGAGGCATCTGTAAA...TTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp GATGATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGAACAATGATAGGGCATTaGTTCATGATCTGGCCCAAT +
Preference number: 2 (lower is better)
Translates to: DDCESLCECYNQIQVLERTMIGH*FMIWPN
Trigger: ATTGGGCCAGATCATGAATCAATGCCCTATCATTGT...TCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp GGTCTAAGCAAGCTATGTGCCTTTGAAGAACAAACCACAAATGTGATTTCAACTTGGTCTCTCATCTGCTaGAAATTGTCCCCTGACATA +
Preference number: 2 (lower is better)
Translates to: GLSKLCAFEEQTTNVISTWSLIC*KLSPDI
Trigger: TATGTCAGGGGACAATTTGCAGCAGATGAGAGACCA...AGTTGAAATCACATTTGTGGTTTGTTCTTCAAAGGCACATAGCTTGCTTAGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
3UTR-3UTR TCA 90 bp AGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGAACCATCTTTTACAGATGCCTCCTaGCCTTTCTGCTGCTGGAAT +
Preference number: 2 (lower is better)
Translates to: RIFYSKIKHSWRAHIEPSFTDAS*PFCCWN
Trigger: ATTCCAGCAGCAGAAAGGTCAGGAGGCATCTGTAAA...AGATGGTTCAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp GCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATGCACAATGATAGGGCATTaGTTCATGATCTGGCCCAAT +
Preference number: 2 (lower is better)
Translates to: ASCLKADTNRALVKNEECTMIGH*FMIWPN
Trigger: ATTGGGCCAGATCATGAATCAATGCCCTATCATTGT...GCATTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp GATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGAGATGCAGCCTACATCATTTaGCATAGTCAATTACTTTCC +
Preference number: 2 (lower is better)
Translates to: DCESLCECYNQIQVLERDAAYII*HSQLLS
Trigger: GGAAAGTAATTGACTATGTCAAATGATGTAGGCTGC...ATCTCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp AATTCTGCAGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGTTCTGCTGCTGGAATTaGAGTCTGACTCCATGGTTG +
Preference number: 2 (lower is better)
Translates to: NSAEYFTVRLNTAGVLILFCCWN*SLTPWL
Trigger: CAACCATGGAGTCAGACTGCAATTCCAGCAGCAGAA...CAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCTGCAGAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp GAAGTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAACTGAAACAAGCTACCTaGAGCAGCCTACATCATTTG +
Preference number: 2 (lower is better)
Translates to: EVASCLKADTNRALVKNELKQAT*SSLHHL
Trigger: CAAATGATGTAGGCTGCTGCAGGTAGCTTGTTTCAG...TTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTACTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp GATGATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGAGTTTTGTTGTTTGTTTaGTTTGCATGCTACTTGCCT +
Preference number: 2 (lower is better)
Translates to: DDCESLCECYNQIQVLERVLLFV*FACYLP
Trigger: AGGCAAGTAGCATGCAAATCAAACAAACAACAAAAC...TCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp GTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAAGTGCCCACCTCACAATaGACATTTCTGACTTTTTAC +
Preference number: 2 (lower is better)
Translates to: VASCLKADTNRALVKNEEVPTSQ*TFLTFY
Trigger: GTAAAAAGTCAGAAATGTGCATTGTGAGGTGGGCAC...TTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp GCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATGCGTTTTGTTGTTTGTTTaGTTTGCATGCTACTTGCCT +
Preference number: 2 (lower is better)
Translates to: ASCLKADTNRALVKNEECVLLFV*FACYLP
Trigger: AGGCAAGTAGCATGCAAATCAAACAAACAACAAAAC...GCATTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp GTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAAAGGTGCTTCTGTCTTTaGGGTCATTTGCTTTCATTT +
Preference number: 2 (lower is better)
Translates to: VASCLKADTNRALVKNEERCFCL*GHLLSF
Trigger: AAATGAAAGCAAATGACCTCAAAGACAGAAGCACCT...TTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR TCA 90 bp GAAGTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGCAGCCTACATCATTTaGCATAGTCAATTACTTTCC +
Preference number: 2 (lower is better)
Translates to: EVASCLKADTNRALVKNEAAYII*HSQLLS
Trigger: GGAAAGTAATTGACTATGTCAAATGATGTAGGCTGC...TTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTACTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp GATGATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGAGTTGTTTGTTTGATTTaGATGCTACTTGCCTTGATT +
Preference number: 2 (lower is better)
Translates to: DDCESLCECYNQIQVLERVVCLI*MLLALI
Trigger: AATCAAGGCAAGTAGCATGCAAATCAAACAAACAAC...TCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp GATGATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGACTCTTGAGTCTAATGTaGGACTGTCTTCTATTTAAA +
Preference number: 2 (lower is better)
Translates to: DDCESLCECYNQIQVLERLLSLM*DCLLFK
Trigger: TTTAAATAGAAGACAGTCGCACATTAGACTCAAGAG...TCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR GCA 90 bp ACCTTGCTCTGCAAAGATTTACAGGAAGTCCAAGGATTGTACAGGATTTTCAACACACTTGTTCAATTTTaGAAGGCTCATTATCTGCAA +
Preference number: 2 (lower is better)
Translates to: TLLCKDLQEVQGLYRIFNTLVQF*KAHYLQ
Trigger: TTGCAGATAATGAGCCTTGCAAAATTGAACAAGTGT...GTTGAAAATCCTGTACAATCCTTGGACTTCCTGTAAATCTTTGCAGAGCAAGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
3UTR-3UTR TCA 90 bp AATTCTGCAGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGAGGTGCTTCTGTCTTTaGGGTCATTTGCTTTCATTT +
Preference number: 2 (lower is better)
Translates to: NSAEYFTVRLNTAGVLILRCFCL*GHLLSF
Trigger: AAATGAAAGCAAATGACCTCAAAGACAGAAGCACCT...CAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCTGCAGAATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR CCA 72 bp CGGAGAAGGTTTTCTCTGCTCGAGTCCAGTCCCAGGTaGTCACTGGAGGTGACAGGAACCTGTAAAGACAGG +
Preference number: 3 (lower is better)
Translates to: RRRFSLLESSPR*SLEVTGTCKDR
Trigger: CCTGTCTTTACAGGTTCCTGTCACCTCCAGTGACCACCTGGGACTGGACTCGAGCAGAGAAAACCTTCTCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR GCA 72 bp TGTCAGGCAGAGCTCAGCATGTCAAGCCAGGTGCTTTaGCTTGCTTGTAGAAGCAGAGCTGACAGCAGCAGT +
Preference number: 3 (lower is better)
Translates to: CQAELSMSSQVL*LACRSRADSSS
Trigger: ACTGCTGCTGTCAGCTCTGCTTCTACAAGCAAGGCAAAGCACCTGGCTTGACATGCTGAGCTCTGCCTGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR GCA 72 bp AAGGCTGTCAGGCAGAGCTCAGCATGTCAAGCCAGGTaGTTTGCCTTGCTTGTAGAAGCAGAGCTGACAGCA +
Preference number: 3 (lower is better)
Translates to: KAVRQSSACQAR*FALLVEAELTA
Trigger: TGCTGTCAGCTCTGCTTCTACAAGCAAGGCAAAGCACCTGGCTTGACATGCTGAGCTCTGCCTGACAGCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR GCA 72 bp ACTGTCATTCCCTTCTCCTTTACATCCGACTGTGTGTaGACGTGCACGCACACACTCACACACACACACATT +
Preference number: 3 (lower is better)
Translates to: TVIPFSFTSDCV*TCTHTLTHTHI
Trigger: AATGTGTGTGTGTGTGAGTGTGTGCGTGCACGTGCACACACAGTCGGATGTAAAGGAGAAGGGAATGACAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
3UTR GCA 72 bp GACTCTCCAACACACATGCATAGGTCTTGCACTGTATaGGCTCCACTTCAAGAAAGGTGGCTGTTTGGAAGG +
Preference number: 3 (lower is better)
Translates to: DSPTHMHRSCTV*APLQERWLFGR
Trigger: CCTTCCAAACAGCCACCTTTCTTGAAGTGGAGCGCATACAGTGCAAGACCTATGCATGTGTGTTGGAGAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR-3UTR CAA 90 bp TACAGATGCCTCCTGACCTTTCTGCTGCTGGAATTGCAGTCTGACTCCATGGTTTTTCTGCTGCTGGAATaGCAGTCTGACTCCATGGTT +
Preference number: 3 (lower is better)
Translates to: YRCLLTFLLLELQSDSMVFLLLE*QSDSMV
Trigger: AACCATGGAGTCAGACTGCAATTCCAGCAGCAGAAA...AACCATGGAGTCAGACTGCAATTCCAGCAGCAGAAAGGTCAGGAGGCATCTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR-3UTR CAA 90 bp CTCCAAAGTACAGCCTTTGTTGCTGCGTCAAAGCAGATGAAGCCTGTGCTGAAGTTTCTGCTGCTGGAATaGCAGTCTGACTCCATGGTT +
Preference number: 3 (lower is better)
Translates to: LQSTAFVAASKQMKPVLKFLLLE*QSDSMV
Trigger: AACCATGGAGTCAGACTGCAATTCCAGCAGCAGAAA...CTTCAGCACAGGCTTCATCTGCTTTGACGCAGCAACAAAGGCTGTACTTTGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR TCA 72 bp GTAGAAGCAGAGCTGACAGCAGCAGTAGTGGCAGCCTaGTTACCTAAAAACAGAGGGTCCAAACAAGCTACT +
Preference number: 3 (lower is better)
Translates to: VEAELTAAVVAA*LPKNRGSKQAT
Trigger: AGTAGCTTGTTTGGACCCTCTGTTTTTAGGTAATCAGGCTGCCACTACTGCTGCTGTCAGCTCTGCTTCTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR GCA 72 bp CCATTAAGTGACTCTCCAACACACATGCATAGGTCTTaGACTGTATGCGCTCCACTTCAAGAAAGGTGGCTG +
Preference number: 3 (lower is better)
Translates to: PLSDSPTHMHRS*TVCAPLQERWL
Trigger: CAGCCACCTTTCTTGAAGTGGAGCGCATACAGTGCAAGACCTATGCATGTGTGTTGGAGAGTCACTTAATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR TCA 72 bp CCTGGCCTTGAGTGCCCACCTCACAATGCACATTTCTaGCTTTTTACCTTCCTAATTCTGAAACAAGCTACC +
Preference number: 3 (lower is better)
Translates to: PGLECPPHNAHF*LFTFLILKQAT
Trigger: GGTAGCTTGTTTCAGAATTAGGAAGGTAAAAAGTCAGAAATGTGCATTGTGAGGTGGGCACTCAAGGCCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR CCA 72 bp CTTATGTGGCTGAGATCTGCAAAACAGGAATTGTACTaGTCTCTCATCTGCTGCAAATTGTCCCCTGACATA +
Preference number: 3 (lower is better)
Translates to: LMWLRSAKQELY*SLICCKLSPDI
Trigger: TATGTCAGGGGACAATTTGCAGCAGATGAGAGACCAGTACAATTCCTGTTTTGCAGATCTCAGCCACATAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
3UTR TCA 72 bp GCAAGACTGAAAATAAAGTTCCCTTGCTTATGTGGCTaGGATCTGCAAAACAGGAATTGTACTGGTCTCTCA +
Preference number: 3 (lower is better)
Translates to: ARLKIKFPCLCG*DLQNRNCTGLS
Trigger: TGAGAGACCAGTACAATTCCTGTTTTGCAGATCTCAGCCACATAAGCAAGGGAACTTTATTTTCAGTCTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
3UTR GCA 72 bp ACAGAAGACCTCTGTATAGTTTTAAATTCCAGTTGTTaGCTACTATGTGGCAGCAACAAGTGTAGTGGCAGA +
Preference number: 3 (lower is better)
Translates to: TEDLCIVLNSSC*LLCGSNKCSGR
Trigger: TCTGCCACTACACTTGTTGCTGCCACATAGTAGGCAACAACTGGAATTTAAAACTATACAGAGGTCTTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR CAA 90 bp GAAGTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAATTTCTGCTGCTGGAATaGCAGTCTGACTCCATGGTT +
Preference number: 3 (lower is better)
Translates to: EVASCLKADTNRALVKNEFLLLE*QSDSMV
Trigger: AACCATGGAGTCAGACTGCAATTCCAGCAGCAGAAA...TTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTACTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR CAA 90 bp ACCTTGCTCTGCAAAGATTTACAGGAAGTCCAAGGATTGTACAGGATTTTCAACTGCTCCTTAGATATTTaGGAAATGACAACCGGGATG +
Preference number: 3 (lower is better)
Translates to: TLLCKDLQEVQGLYRIFNCSLDI*EMTTGM
Trigger: CATCCCGGTTGTCATTTCCAAAATATCTAAGGAGCA...GTTGAAAATCCTGTACAATCCTTGGACTTCCTGTAAATCTTTGCAGAGCAAGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
3UTR CCA 72 bp AGTTGCAAGACTGAAAATAAAGTTCCCTTGCTTATGTaGCTGAGATCTGCAAAACAGGAATTGTACTGGTCT +
Preference number: 3 (lower is better)
Translates to: SCKTENKVPLLM*LRSAKQELYWS
Trigger: AGACCAGTACAATTCCTGTTTTGCAGATCTCAGCCACATAAGCAAGGGAACTTTATTTTCAGTCTTGCAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
3UTR-3UTR CAA 90 bp GCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATGCTGTTTTGTTGTTTGTTaGATTTGCATGCTACTTGCC +
Preference number: 3 (lower is better)
Translates to: ASCLKADTNRALVKNEECCFVVC*ICMLLA
Trigger: GGCAAGTAGCATGCAAATCAAACAAACAACAAAACA...GCATTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR CAA 90 bp TGCTCTGCAAAGATTTACAGGAAGTCCAAGGATTGTACAGGATTTTCAACACATTCTGAGTTAAAATGTTaGTATCTGGTCTGCACATCT +
Preference number: 3 (lower is better)
Translates to: CSAKIYRKSKDCTGFSTHSELKC*YLVCTS
Trigger: AGATGTGCAGACCAGATACAAACATTTTAACTCAGA...ATGTGTTGAAAATCCTGTACAATCCTTGGACTTCCTGTAAATCTTTGCAGAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
3UTR-3UTR CAA 90 bp AGTTGCAAGACTGAAAATAAAGTTCCCTTGCTTATGTGGCTGAGATCTGCAAAAAACACTTGTTCAATTTaGCAAGGCTCATTATCTGCA +
Preference number: 3 (lower is better)
Translates to: SCKTENKVPLLMWLRSAKNTCSI*QGSLSA
Trigger: TGCAGATAATGAGCCTTGCAAAATTGAACAAGTGTT...TTTTGCAGATCTCAGCCACATAAGCAAGGGAACTTTATTTTCAGTCTTGCAACT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
3UTR GCA 72 bp ATTGTAGTTTCAGATGATTGTGAGTCACTTTGTGAGTaGTACAATCAAATCCAGGTCCTTGAAAGAGATGTA +
Preference number: 3 (lower is better)
Translates to: IVVSDDCESLCE*YNQIQVLERDV
Trigger: TACATCTCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATCTGAAACTACAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR-3UTR CAA 90 bp AGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGAACCATCTTGTTTTGTTGTTTGTTaGATTTGCATGCTACTTGCC +
Preference number: 3 (lower is better)
Translates to: RIFYSKIKHSWRAHIEPSCFVVC*ICMLLA
Trigger: GGCAAGTAGCATGCAAATCAAACAAACAACAAAACA...AGATGGTTCAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR TCA 72 bp TGTATGTATATGCACCACGTGTGTATCTGGTGCTACTaGGTTCTGAAGCAAGCATTTAATTCTCTAAAAATT +
Preference number: 3 (lower is better)
Translates to: CMYMHHVCIWCY*VLKQAFNSLKI
Trigger: AATTTTTAGAGAATTAAATGCTTGCTTCAGAACTCAGTAGCACCAGATACACACGTGGTGCATATACATACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR TCA 72 bp TTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATaGAGAATGCTTCTTGTTTTGTATGATGAACAGTCT +
Preference number: 3 (lower is better)
Translates to: FKSRHQQSLSKE*RMLLVLYDEQS
Trigger: AGACTGTTCATCATACAAAACAAGAAGCATTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR TCA 72 bp CCACTAATCCATCTCTCCTGCTCCATACAGTTATTTTaGATGATTACAGAAGACCTCTGTATAGTTTTAAAT +
Preference number: 3 (lower is better)
Translates to: PLIHLSCSIQLF*MITEDLCIVLN
Trigger: ATTTAAAACTATACAGAGGTCTTCTGTAATCATTCAAAATAACTGTATGGAGCAGGAGAGATGGATTAGTGG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR CCA 72 bp TTCTGCAGAATATTTTACAGTAAGATTAAACACAGCTaGCGTGCTCATATTGAACCATCTGATGAGATTATA +
Preference number: 3 (lower is better)
Translates to: FCRIFYSKIKHS*RAHIEPSDEII
Trigger: TATAATCTCATCAGATGGTTCAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCTGCAGAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
3UTR CAA 72 bp GCACTGTATGCGCTCCACTTCAAGAAAGGTGGCTGTTaGGAAGGCTCGTTCCCATTGGGCAAGGTCACTCTC +
Preference number: 4 (lower is better)
Translates to: ALYALHFKKGGC*EGSFPLGKVTL
Trigger: GAGAGTGACCTTGCCCAATGGGAACGAGCCTTCCAAACAGCCACCTTTCTTGAAGTGGAGCGCATACAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR CAA 72 bp AGGCAGAGCTCAGCATGTCAAGCCAGGTGCTTTGCCTaGCTTGTAGAAGCAGAGCTGACAGCAGCAGTAGTG +
Preference number: 4 (lower is better)
Translates to: RQSSACQARCFA*LVEAELTAAVV
Trigger: CACTACTGCTGCTGTCAGCTCTGCTTCTACAAGCAAGGCAAAGCACCTGGCTTGACATGCTGAGCTCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
CDS-3UTR GCA 90 bp ACACAGGTGTATACACACGGTCTTGGAGGGATTCCTGCTCCCGGGCTTCACACCCTGCACCTCCCTTTATaGTTAATCCGAATCCTCCTA +
Preference number: 4 (lower is better)
Translates to: TQVYTHGLGGIPAPGLHTLHLPL*LIRILL
Trigger: TAGGAGGATTCGGATTAAGCATAAAGGGAGGTGCAG...GGTGTGAAGCCCGGGAGCAGGAATCCCTCCAAGACCGTGTGTATACACCTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
CDS-3UTR CCA 90 bp AGCCAGGTGCTTTGCCTTGCTTGTAGAAGCAGAGCTGACAGCAGCAGTAGTGGCTCCACAGCAACAACTTaGAAAGCGTTCTGCATGCAC +
Preference number: 4 (lower is better)
Translates to: SQVLCLACRSRADSSSSGSTATT*KAFCMH
Trigger: GTGCATGCAGAACGCTTTCCAAGTTGTTGCTGTGGA...GCCACTACTGCTGCTGTCAGCTCTGCTTCTACAAGCAAGGCAAAGCACCTGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
CDS-3UTR GCA 90 bp TACAGATGCCTCCTGACCTTTCTGCTGCTGGAATTGCAGTCTGACTCCATGGTTCTTGGAGCCAATCCATaGAGTCTTCAGCAGAGAGGC +
Preference number: 4 (lower is better)
Translates to: YRCLLTFLLLELQSDSMVLGANP*SLQQRG
Trigger: GCCTCTCTGCTGAAGACTGCATGGATTGGCTCCAAG...AACCATGGAGTCAGACTGCAATTCCAGCAGCAGAAAGGTCAGGAGGCATCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp AATTCCAGTTGTTGCCTACTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCTCTTGGAGGGATTCCTaGTCCCGGGCTTCACACCAG +
Preference number: 4 (lower is better)
Translates to: NSSCCLLCGSNKCSGRAFSWRDS*SRASHQ
Trigger: CTGGTGTGAAGCCCGGGAGCAGGAATCCCTCCAAGA...GAAAGCTCTGCCACTACACTTGTTGCTGCCACATAGTAGGCAACAACTGGAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp AGCCAGGTGCTTTGCCTTGCTTGTAGAAGCAGAGCTGACAGCAGCAGTAGTGGCGGAAAGCGTTCTGCATaGACAGTCTTCATTAACTGG +
Preference number: 4 (lower is better)
Translates to: SQVLCLACRSRADSSSSGGKRSA*TVFINW
Trigger: CCAGTTAATGAAGACTGTGCATGCAGAACGCTTTCC...GCCACTACTGCTGCTGTCAGCTCTGCTTCTACAAGCAAGGCAAAGCACCTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
CDS-3UTR CCA 90 bp AATTCCAGTTGTTGCCTACTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCGAGTCCAGTCCCAGGTaGTCACTGGAGGTGACAGGA +
Preference number: 4 (lower is better)
Translates to: NSSCCLLCGSNKCSGRAFESSPR*SLEVTG
Trigger: TCCTGTCACCTCCAGTGACCACCTGGGACTGGACTC...GAAAGCTCTGCCACTACACTTGTTGCTGCCACATAGTAGGCAACAACTGGAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR CAA 72 bp TTCCGCCGATCCAGCAGGTCACTGTCCTTGAGAACCTaGCACATGATCTCACACACGGAGAAGGTTTTCTCT +
Preference number: 4 (lower is better)
Translates to: FRRSSRSLSLRT*HMISHTEKVFS
Trigger: AGAGAAAACCTTCTCCGTGTGTGAGATCATGTGCAAGGTTCTCAAGGACAGTGACCTGCTGGATCGGCGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
3UTR CAA 72 bp AAGCAATGTTTCCGCCGATCCAGCAGGTCACTGTCCTaGAGAACCTTGCACATGATCTCACACACGGAGAAG +
Preference number: 4 (lower is better)
Translates to: KQCFRRSSRSLS*RTLHMISHTEK
Trigger: CTTCTCCGTGTGTGAGATCATGTGCAAGGTTCTCAAGGACAGTGACCTGCTGGATCGGCGGAAACATTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
CDS-3UTR GCA 90 bp ACACAGGTGTATACACACGGTCTTGGAGGGATTCCTGCTCCCGGGCTTCACACCGACAGCTCTGCTCTTTaGTCCTTAGATATTTTGGAA +
Preference number: 4 (lower is better)
Translates to: TQVYTHGLGGIPAPGLHTDSSAL*SLDILE
Trigger: TTCCAAAATATCTAAGGAGCAAAGAGCAGAGCTGTC...GGTGTGAAGCCCGGGAGCAGGAATCCCTCCAAGACCGTGTGTATACACCTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
CDS-3UTR GCA 90 bp CTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCAGAAGAGATGATAGAGGCCTTGGAGCCAATCCATaGAGTCTTCAGCAGAGAGGC +
Preference number: 4 (lower is better)
Translates to: LCGSNKCSGRAFRRDDRGLGANP*SLQQRG
Trigger: GCCTCTCTGCTGAAGACTGCATGGATTGGCTCCAAG...GCCTCTATCATCTCTTCTGAAAGCTCTGCCACTACACTTGTTGCTGCCACATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp TTGAGAACCTTGCACATGATCTCACACACGGAGAAGGTTTTCTCTGCTCGAGTCCTTGGAGCCAATCCATaGAGTCTTCAGCAGAGAGGC +
Preference number: 4 (lower is better)
Translates to: LRTLHMISHTEKVFSARVLGANP*SLQQRG
Trigger: GCCTCTCTGCTGAAGACTGCATGGATTGGCTCCAAG...GACTCGAGCAGAGAAAACCTTCTCCGTGTGTGAGATCATGTGCAAGGTTCTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
CDS-3UTR CCA 90 bp CTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCAGAAGAGATGATAGAGGCTCCACAGCAACAACTTaGAAAGCGTTCTGCCGACTC +
Preference number: 4 (lower is better)
Translates to: LCGSNKCSGRAFRRDDRGSTATT*KAFCRL
Trigger: GAGTCGGCAGAACGCTTTCCAAGTTGTTGCTGTGGA...GCCTCTATCATCTCTTCTGAAAGCTCTGCCACTACACTTGTTGCTGCCACATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CCA 90 bp ACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTATCCTGGTAGAGTCCAGTCCCAGGTaGTCACTGGAGGTGACAGGA +
Preference number: 4 (lower is better)
Translates to: TLHQSILVTKHDGSCILVESSPR*SLEVTG
Trigger: TCCTGTCACCTCCAGTGACCACCTGGGACTGGACTC...TACCAGGATACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR TCA 90 bp TTGAGAACCTTGCACATGATCTCACACACGGAGAAGGTTTTCTCTGCTCGAGTCCTACTGTCTGTCTTCTaGTGGTCACCGTTCTTTCAC +
Preference number: 4 (lower is better)
Translates to: LRTLHMISHTEKVFSARVLLSVF*WSPFFH
Trigger: GTGAAAGAACGGTGACCATCAGAAGACAGACAGTAG...GACTCGAGCAGAGAAAACCTTCTCCGTGTGTGAGATCATGTGCAAGGTTCTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
CDS-3UTR GCA 90 bp GATGATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGATCTTGGAGGGATTCCTaGTCCCGGGCTTCACACCAG +
Preference number: 4 (lower is better)
Translates to: DDCESLCECYNQIQVLERSWRDS*SRASHQ
Trigger: CTGGTGTGAAGCCCGGGAGCAGGAATCCCTCCAAGA...TCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp CTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCAGAAGAGATGATAGAGGCGTCACTTGGAGCACATaGACAGTCTTCATTAACTGG +
Preference number: 4 (lower is better)
Translates to: LCGSNKCSGRAFRRDDRGVTWST*TVFINW
Trigger: CCAGTTAATGAAGACTGTGCATGTGCTCCAAGTGAC...GCCTCTATCATCTCTTCTGAAAGCTCTGCCACTACACTTGTTGCTGCCACATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp CTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCAGAAGAGATGATAGAGGCTCCCCACACTCAGACTaGATAGTGAAGCAATGTTTC +
Preference number: 4 (lower is better)
Translates to: LCGSNKCSGRAFRRDDRGSPHSD*IVKQCF
Trigger: GAAACATTGCTTCACTATGCAGTCTGAGTGTGGGGA...GCCTCTATCATCTCTTCTGAAAGCTCTGCCACTACACTTGTTGCTGCCACATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp TACAGATGCCTCCTGACCTTTCTGCTGCTGGAATTGCAGTCTGACTCCATGGTTACTCTCCAACACACATaGATAGGTCTTGCACTGTAT +
Preference number: 4 (lower is better)
Translates to: YRCLLTFLLLELQSDSMVTLQHT*IGLALY
Trigger: ATACAGTGCAAGACCTATGCATGTGTGTTGGAGAGT...AACCATGGAGTCAGACTGCAATTCCAGCAGCAGAAAGGTCAGGAGGCATCTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CCA 90 bp ATTTACATACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTACTCCCACCTCAGGCCTaGAGATGTGGGCCACGAAGA +
Preference number: 4 (lower is better)
Translates to: IYILYTNQSLSPNMMAAVLPPQA*RCGPRR
Trigger: TCTTCGTGGCCCACATCTCCAGGCCTGAGGTGGGAG...TACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGTATGTAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CCA 90 bp GAAGTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAACTCCCACCTCAGGCCTaGAGATGTGGGCCACGAAGA +
Preference number: 4 (lower is better)
Translates to: EVASCLKADTNRALVKNELPPQA*RCGPRR
Trigger: TCTTCGTGGCCCACATCTCCAGGCCTGAGGTGGGAG...TTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
3UTR CAA 72 bp CCCTTGCTTATGTGGCTGAGATCTGCAAAACAGGAATaGTACTGGTCTCTCATCTGCTGCAAATTGTCCCCT +
Preference number: 4 (lower is better)
Translates to: PLLMWLRSAKQE*YWSLICCKLSP
Trigger: AGGGGACAATTTGCAGCAGATGAGAGACCAGTACAATTCCTGTTTTGCAGATCTCAGCCACATAAGCAAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
CDS-3UTR GCA 90 bp AATTCCAGTTGTTGCCTACTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCCTGCACCTCCCTTTATaGTTAATCCGAATCCTCCTA +
Preference number: 4 (lower is better)
Translates to: NSSCCLLCGSNKCSGRAFLHLPL*LIRILL
Trigger: TAGGAGGATTCGGATTAAGCATAAAGGGAGGTGCAG...GAAAGCTCTGCCACTACACTTGTTGCTGCCACATAGTAGGCAACAACTGGAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp AATTCCAGTTGTTGCCTACTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCGTCACTTGGAGCACATaGACAGTCTTCATTAACTGG +
Preference number: 4 (lower is better)
Translates to: NSSCCLLCGSNKCSGRAFVTWST*TVFINW
Trigger: CCAGTTAATGAAGACTGTGCATGTGCTCCAAGTGAC...GAAAGCTCTGCCACTACACTTGTTGCTGCCACATAGTAGGCAACAACTGGAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp ATTTACATACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTATCTTGGAGGGATTCCTaGTCCCGGGCTTCACACCAG +
Preference number: 4 (lower is better)
Translates to: IYILYTNQSLSPNMMAAVSWRDS*SRASHQ
Trigger: CTGGTGTGAAGCCCGGGAGCAGGAATCCCTCCAAGA...TACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGTATGTAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp AATTCCAGTTGTTGCCTACTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCTCCCCACACTCAGACTaGATAGTGAAGCAATGTTTC +
Preference number: 4 (lower is better)
Translates to: NSSCCLLCGSNKCSGRAFSPHSD*IVKQCF
Trigger: GAAACATTGCTTCACTATGCAGTCTGAGTGTGGGGA...GAAAGCTCTGCCACTACACTTGTTGCTGCCACATAGTAGGCAACAACTGGAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CCA 90 bp GAAGTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAGTCCAGTCCCAGGTaGTCACTGGAGGTGACAGGA +
Preference number: 4 (lower is better)
Translates to: EVASCLKADTNRALVKNEESSPR*SLEVTG
Trigger: TCCTGTCACCTCCAGTGACCACCTGGGACTGGACTC...TTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp CTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCAGAAGAGATGATAGAGGCAATGTTAGATGCTATTaGTTGGAGCCAATCCATGCA +
Preference number: 4 (lower is better)
Translates to: LCGSNKCSGRAFRRDDRGNVRCY*LEPIHA
Trigger: TGCATGGATTGGCTCCAAGCAATAGCATCTAACATT...GCCTCTATCATCTCTTCTGAAAGCTCTGCCACTACACTTGTTGCTGCCACATAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp GCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATGCGGAGAAGGTTTTCTCTaGTCGAGTCCAGTCCCAGGT +
Preference number: 4 (lower is better)
Translates to: ASCLKADTNRALVKNEECGEGFL*SSPVPG
Trigger: ACCTGGGACTGGACTCGAGCAGAGAAAACCTTCTCC...GCATTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CCA 90 bp GATGATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGATCCACAGCAACAACTTaGAAAGCGTTCTGCCGACTC +
Preference number: 4 (lower is better)
Translates to: DDCESLCECYNQIQVLERSTATT*KAFCRL
Trigger: GAGTCGGCAGAACGCTTTCCAAGTTGTTGCTGTGGA...TCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CCA 90 bp AATTCCAGTTGTTGCCTACTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCTTAGATGCTATTGCTTaGAGCCAATCCATGCAGTCT +
Preference number: 4 (lower is better)
Translates to: NSSCCLLCGSNKCSGRAFLDAIA*SQSMQS
Trigger: AGACTGCATGGATTGGCTCCAAGCAATAGCATCTAA...GAAAGCTCTGCCACTACACTTGTTGCTGCCACATAGTAGGCAACAACTGGAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp ACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTATCCTGGTACTGCACCTCCCTTTATaGTTAATCCGAATCCTCCTA +
Preference number: 4 (lower is better)
Translates to: TLHQSILVTKHDGSCILVLHLPL*LIRILL
Trigger: TAGGAGGATTCGGATTAAGCATAAAGGGAGGTGCAG...TACCAGGATACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp GTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAAGGAGAAGGTTTTCTCTaGTCGAGTCCAGTCCCAGGT +
Preference number: 4 (lower is better)
Translates to: VASCLKADTNRALVKNEEGEGFL*SSPVPG
Trigger: ACCTGGGACTGGACTCGAGCAGAGAAAACCTTCTCC...TTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp TCAGTGAAATTCAAAATTATCATAGCTCATGTGTTTGGTTGCTCTAGTAAGCAGGAGAGGAGGTACCACTaGTTTGGTCACTTGGAGCAC +
Preference number: 4 (lower is better)
Translates to: SVKFKIIIAHVFGCSSKQERRYH*FGHLEH
Trigger: GTGCTCCAAGTGACCAAAGCAGTGGTACCTCCTCTC...CTGCTTACTAGAGCAACCAAACACATGAGCTATGATAATTTTGAATTTCACTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp AGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGAACCATCTGAGAGGAGGTACCACTaGTTTGGTCACTTGGAGCAC +
Preference number: 4 (lower is better)
Translates to: RIFYSKIKHSWRAHIEPSERRYH*FGHLEH
Trigger: GTGCTCCAAGTGACCAAAGCAGTGGTACCTCCTCTC...AGATGGTTCAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp TCAGTGAAATTCAAAATTATCATAGCTCATGTGTTTGGTTGCTCTAGTAAGCAGCTTGGAGCCAATCCATaGAGTCTTCAGCAGAGAGGC +
Preference number: 4 (lower is better)
Translates to: SVKFKIIIAHVFGCSSKQLGANP*SLQQRG
Trigger: GCCTCTCTGCTGAAGACTGCATGGATTGGCTCCAAG...CTGCTTACTAGAGCAACCAAACACATGAGCTATGATAATTTTGAATTTCACTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp TCAGTGAAATTCAAAATTATCATAGCTCATGTGTTTGGTTGCTCTAGTAAGCAGGGAGAAGGTTTTCTCTaGTCGAGTCCAGTCCCAGGT +
Preference number: 4 (lower is better)
Translates to: SVKFKIIIAHVFGCSSKQGEGFL*SSPVPG
Trigger: ACCTGGGACTGGACTCGAGCAGAGAAAACCTTCTCC...CTGCTTACTAGAGCAACCAAACACATGAGCTATGATAATTTTGAATTTCACTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CCA 90 bp GAAGTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAGGTACCACTGCTTTaGTCACTTGGAGCACATGCA +
Preference number: 4 (lower is better)
Translates to: EVASCLKADTNRALVKNEEVPLL*SLGAHA
Trigger: TGCATGTGCTCCAAGTGACCAAAGCAGTGGTACCTC...TTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTACTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CCA 90 bp ATTTACATACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTAGAGGTACCACTGCTTTaGTCACTTGGAGCACATGCA +
Preference number: 4 (lower is better)
Translates to: IYILYTNQSLSPNMMAAVEVPLL*SLGAHA
Trigger: TGCATGTGCTCCAAGTGACCAAAGCAGTGGTACCTC...TACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGTATGTAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CCA 90 bp GTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATCCACAGCAACAACTTaGAAAGCGTTCTGCCGACTC +
Preference number: 4 (lower is better)
Translates to: VASCLKADTNRALVKNEESTATT*KAFCRL
Trigger: GAGTCGGCAGAACGCTTTCCAAGTTGTTGCTGTGGA...TTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR TCA 90 bp GTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAACTACTGTCTGTCTTCTaGTGGTCACCGTTCTTTCAC +
Preference number: 4 (lower is better)
Translates to: VASCLKADTNRALVKNEELLSVF*WSPFFH
Trigger: GTGAAAGAACGGTGACCATCAGAAGACAGACAGTAG...TTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR TCA 90 bp GAAGTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAACTACTGTCTGTCTTCTaGTGGTCACCGTTCTTTCAC +
Preference number: 4 (lower is better)
Translates to: EVASCLKADTNRALVKNELLSVF*WSPFFH
Trigger: GTGAAAGAACGGTGACCATCAGAAGACAGACAGTAG...TTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTACTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR TCA 90 bp GCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATGCTATTTGGATGGTAGTTaGGGTGTAAGCCACTGTCAC +
Preference number: 4 (lower is better)
Translates to: ASCLKADTNRALVKNEECYLDGS*GVSHCH
Trigger: GTGACAGTGGCTTACACCTCAACTACCATCCAAATA...GCATTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR TCA 90 bp ACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTATCCTGGTAGTGCTTTGTGAGGTTTaGAATGTTAGATGCTATTGC +
Preference number: 4 (lower is better)
Translates to: TLHQSILVTKHDGSCILVVLCEV*NVRCYC
Trigger: GCAATAGCATCTAACATTTCAAACCTCACAAAGCAC...TACCAGGATACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp AATGCCACAGTGAAATTGCTGGTAAATTCTTCTTTTACTGTCATTCCCTTCTCCCTGCACCTCCCTTTATaGTTAATCCGAATCCTCCTA +
Preference number: 4 (lower is better)
Translates to: NATVKLLVNSSFTVIPFSLHLPL*LIRILL
Trigger: TAGGAGGATTCGGATTAAGCATAAAGGGAGGTGCAG...GGAGAAGGGAATGACAGTAAAAGAAGAATTTACCAGCAATTTCACTGTGGCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
CDS-3UTR GCA 90 bp AATTCCAGTTGTTGCCTACTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCAAATTCCAACTCCTTTaGTTCAATCTGTTTCGTATC +
Preference number: 4 (lower is better)
Translates to: NSSCCLLCGSNKCSGRAFKFQLL*FNLFRI
Trigger: GATACGAAACAGATTGAAGCAAAGGAGTTGGAATTT...GAAAGCTCTGCCACTACACTTGTTGCTGCCACATAGTAGGCAACAACTGGAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CCA 90 bp GAAGTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAACTGCTTTGGTCACTTaGAGCACATGCACAGTCTTC +
Preference number: 4 (lower is better)
Translates to: EVASCLKADTNRALVKNETALVT*STCTVF
Trigger: GAAGACTGTGCATGTGCTCCAAGTGACCAAAGCAGT...TTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTACTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CCA 90 bp TCAGTGAAATTCAAAATTATCATAGCTCATGTGTTTGGTTGCTCTAGTAAGCAGGAGGTACCACTGCTTTaGTCACTTGGAGCACATGCA +
Preference number: 4 (lower is better)
Translates to: SVKFKIIIAHVFGCSSKQEVPLL*SLGAHA
Trigger: TGCATGTGCTCCAAGTGACCAAAGCAGTGGTACCTC...CTGCTTACTAGAGCAACCAAACACATGAGCTATGATAATTTTGAATTTCACTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR TCA 90 bp TCAGTGAAATTCAAAATTATCATAGCTCATGTGTTTGGTTGCTCTAGTAAGCAGCTACTGTCTGTCTTCTaGTGGTCACCGTTCTTTCAC +
Preference number: 4 (lower is better)
Translates to: SVKFKIIIAHVFGCSSKQLLSVF*WSPFFH
Trigger: GTGAAAGAACGGTGACCATCAGAAGACAGACAGTAG...CTGCTTACTAGAGCAACCAAACACATGAGCTATGATAATTTTGAATTTCACTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR TCA 90 bp TTGTATCTGGTCTGCACATCTAAAAGAATTCAAGAAAATGCCACAGTGAAATTGCTACTGTCTGTCTTCTaGTGGTCACCGTTCTTTCCA +
Preference number: 4 (lower is better)
Translates to: LYLVCTSKRIQENATVKLLLSVF*WSPFFP
Trigger: TGGAAAGAACGGTGACCATCAGAAGACAGACAGTAG...CAATTTCACTGTGGCATTTTCTTGAATTCTTTTAGATGTGCAGACCAGATACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
CDS-3UTR GCA 90 bp ATTTACATACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTAGTCACTTGGAGCACATaGACAGTCTTCATTAACTGG +
Preference number: 4 (lower is better)
Translates to: IYILYTNQSLSPNMMAAVVTWST*TVFINW
Trigger: CCAGTTAATGAAGACTGTGCATGTGCTCCAAGTGAC...TACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGTATGTAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp GTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAAACTGAAGAATTCCACTaGAGACTCCATCCACAGCAA +
Preference number: 4 (lower is better)
Translates to: VASCLKADTNRALVKNEETEEFH*RLHPQQ
Trigger: TTGCTGTGGATGGAGTCTGCAGTGGAATTCTTCAGT...TTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp ATTTACATACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTAACTGAAGAATTCCACTaGAGACTCCATCCACAGCAA +
Preference number: 4 (lower is better)
Translates to: IYILYTNQSLSPNMMAAVTEEFH*RLHPQQ
Trigger: TTGCTGTGGATGGAGTCTGCAGTGGAATTCTTCAGT...TACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGTATGTAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp GATGATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGAAATGTTAGATGCTATTaGTTGGAGCCAATCCATGCA +
Preference number: 4 (lower is better)
Translates to: DDCESLCECYNQIQVLERNVRCY*LEPIHA
Trigger: TGCATGGATTGGCTCCAAGCAATAGCATCTAACATT...TCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp GCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATGCACTCTCCAACACACATaGATAGGTCTTGCACTGTAT +
Preference number: 4 (lower is better)
Translates to: ASCLKADTNRALVKNEECTLQHT*IGLALY
Trigger: ATACAGTGCAAGACCTATGCATGTGTGTTGGAGAGT...GCATTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CCA 90 bp AGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGAACCATCTACTGCTTTGGTCACTTaGAGCACATGCACAGTCTTC +
Preference number: 4 (lower is better)
Translates to: RIFYSKIKHSWRAHIEPSTALVT*STCTVF
Trigger: GAAGACTGTGCATGTGCTCCAAGTGACCAAAGCAGT...AGATGGTTCAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR TCA 90 bp GATGATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGAGATGAGCCTTTAAGCTaGGAAAATTTATACCTCCAA +
Preference number: 4 (lower is better)
Translates to: DDCESLCECYNQIQVLERDEPLS*ENLYLQ
Trigger: TTGGAGGTATAAATTTTCTCAGCTTAAAGGCTCATC...TCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp AATTCTGCAGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGCTGCACCTCCCTTTATaGTTAATCCGAATCCTCCTA +
Preference number: 4 (lower is better)
Translates to: NSAEYFTVRLNTAGVLILLHLPL*LIRILL
Trigger: TAGGAGGATTCGGATTAAGCATAAAGGGAGGTGCAG...CAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCTGCAGAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp AGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGAACCATCTACTGAAGAATTCCACTaGAGACTCCATCCACAGCAA +
Preference number: 4 (lower is better)
Translates to: RIFYSKIKHSWRAHIEPSTEEFH*RLHPQQ
Trigger: TTGCTGTGGATGGAGTCTGCAGTGGAATTCTTCAGT...AGATGGTTCAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp AGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGAACCATCTTCCCCACACTCAGACTaGATAGTGAAGCAATGTTTC +
Preference number: 4 (lower is better)
Translates to: RIFYSKIKHSWRAHIEPSSPHSD*IVKQCF
Trigger: GAAACATTGCTTCACTATGCAGTCTGAGTGTGGGGA...AGATGGTTCAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp GAAGTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGACAGCTCTGCTCTTTaGTCCTTAGATATTTTGGAA +
Preference number: 4 (lower is better)
Translates to: EVASCLKADTNRALVKNEDSSAL*SLDILE
Trigger: TTCCAAAATATCTAAGGAGCAAAGAGCAGAGCTGTC...TTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTACTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140295.8
CDS-3UTR GCA 90 bp AATTCTGCAGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGACTCTCCAACACACATaGATAGGTCTTGCACTGTAT +
Preference number: 4 (lower is better)
Translates to: NSAEYFTVRLNTAGVLILTLQHT*IGLALY
Trigger: ATACAGTGCAAGACCTATGCATGTGTGTTGGAGAGT...CAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCTGCAGAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CCA 90 bp AGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGAACCATCTTTAGATGCTATTGCTTaGAGCCAATCCATGCAGTCT +
Preference number: 4 (lower is better)
Translates to: RIFYSKIKHSWRAHIEPSLDAIA*SQSMQS
Trigger: AGACTGCATGGATTGGCTCCAAGCAATAGCATCTAA...AGATGGTTCAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR TCA 90 bp TCAGTGAAATTCAAAATTATCATAGCTCATGTGTTTGGTTGCTCTAGTAAGCAGGTGCTTTGTGAGGTTTaGAATGTTAGATGCTATTGC +
Preference number: 4 (lower is better)
Translates to: SVKFKIIIAHVFGCSSKQVLCEV*NVRCYC
Trigger: GCAATAGCATCTAACATTTCAAACCTCACAAAGCAC...CTGCTTACTAGAGCAACCAAACACATGAGCTATGATAATTTTGAATTTCACTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp AATTCTGCAGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGAATGTTAGATGCTATTaGTTGGAGCCAATCCATGCA +
Preference number: 4 (lower is better)
Translates to: NSAEYFTVRLNTAGVLILNVRCY*LEPIHA
Trigger: TGCATGGATTGGCTCCAAGCAATAGCATCTAACATT...CAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCTGCAGAATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR TCA 90 bp AATTCTGCAGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGGATGAGCCTTTAAGCTaGGAAAATTTATACCTCCAA +
Preference number: 4 (lower is better)
Translates to: NSAEYFTVRLNTAGVLILDEPLS*ENLYLQ
Trigger: TTGGAGGTATAAATTTTCTCAGCTTAAAGGCTCATC...CAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCTGCAGAATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR GCA 90 bp AGAATATTTTACAGTAAGATTAAACACAGCTGGCGTGCTCATATTGAACCATCTAAATTCCAACTCCTTTaGTTCAATCTGTTTCGTATC +
Preference number: 4 (lower is better)
Translates to: RIFYSKIKHSWRAHIEPSKFQLL*FNLFRI
Trigger: GATACGAAACAGATTGAAGCAAAGGAGTTGGAATTT...AGATGGTTCAATATGAGCACGCCAGCTGTGTTTAATCTTACTGTAAAATATTCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS GCA 90 bp GCCAATCCATGCAGTCTTCAGCAGAGAGGCACTGAAGAATTCCACTaGAGACTCCATCCACAGCAACAACTTGGAAAGCGTTCTGCCGAC +
Preference number: 5 (lower is better)
Translates to: ANPCSLQQRGTEEFH*RLHPQQQLGKRSAD
Trigger: GTCGGCAGAACGCTTTCCAAGTTGTTGCTGTGGATGGAGTCTGCAGTGGAATTCTTCAGTGCCTCTCTGCTGAAGACTGCATGGATTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS TCA 90 bp GCCACGAAGAGCAGGAAAGCGTGTCTGTGTTATTTGGATGGTAGTTaGGGTGTAAGCCACTGTCACAAAGAGGAGAGGAGGTACCACTGC +
Preference number: 5 (lower is better)
Translates to: ATKSRKACLCYLDGS*GVSHCHKEERRYHC
Trigger: GCAGTGGTACCTCCTCTCCTCTTTGTGACAGTGGCTTACACCTCAACTACCATCCAAATAACACAGACACGCTTTCCTGCTCTTCGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS GCA 90 bp GCCAATCCATGCAGTCTTCAGCAGAGAGGCACTGAAGAATTCCACTaGAGACTCCATCCACAGCAACAACTTGGAAAGCGTTCTGCATGC +
Preference number: 5 (lower is better)
Translates to: ANPCSLQQRGTEEFH*RLHPQQQLGKRSAC
Trigger: GCATGCAGAACGCTTTCCAAGTTGTTGCTGTGGATGGAGTCTGCAGTGGAATTCTTCAGTGCCTCTCTGCTGAAGACTGCATGGATTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
CDS-3UTR CAA 90 bp AAGCAATGTTTCCGCCGATCCAGCAGGTCACTGTCCTTGAGAACCTTGCACATGATCCACAGCAACAACTaGGAAAGCGTTCTGCATGCA +
Preference number: 5 (lower is better)
Translates to: KQCFRRSSRSLSLRTLHMIHSNN*ESVLHA
Trigger: TGCATGCAGAACGCTTTCCAAGTTGTTGCTGTGGAT...CATGTGCAAGGTTCTCAAGGACAGTGACCTGCTGGATCGGCGGAAACATTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
CDS TCA 90 bp GCTATTGCTTGGAGCCAATCCATGCAGTCTTCAGCAGAGAGGCACTaGAGAATTCCACTGCAGACTCCATCCACAGCAACAACTTGGAAA +
Preference number: 5 (lower is better)
Translates to: AIAWSQSMQSSAERH*RIPLQTPSTATTWK
Trigger: TTTCCAAGTTGTTGCTGTGGATGGAGTCTGCAGTGGAATTCTTCAGTGCCTCTCTGCTGAAGACTGCATGGATTGGCTCCAAGCAATAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS CCA 90 bp AGGTGTAAGCCACTGTCACAAAGAGGAGAGGAGGTACCACTGCTTTaGTCACTTGGAGCACATGCACAGTCTTCATTAACTGGGAGTTTG +
Preference number: 5 (lower is better)
Translates to: RCKPLSQRGEEVPLL*SLGAHAQSSLTGSL
Trigger: CAAACTCCCAGTTAATGAAGACTGTGCATGTGCTCCAAGTGACCAAAGCAGTGGTACCTCCTCTCCTCTTTGTGACAGTGGCTTACACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp ACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTATCCTGGTACACTGCTTTGGTCACTaGGAGCACATGCACAGTCTT +
Preference number: 5 (lower is better)
Translates to: TLHQSILVTKHDGSCILVHCFGH*EHMHSL
Trigger: AAGACTGTGCATGTGCTCCAAGTGACCAAAGCAGTG...TACCAGGATACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp GCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATGCGGAGGTACCACTGCTTaGGTCACTTGGAGCACATGC +
Preference number: 5 (lower is better)
Translates to: ASCLKADTNRALVKNEECGGTTA*VTWSTC
Trigger: GCATGTGCTCCAAGTGACCAAAGCAGTGGTACCTCC...GCATTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp AATTCCAGTTGTTGCCTACTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCTGCTCCTTAGATATTTaGGAAATGACAACCGGGATG +
Preference number: 5 (lower is better)
Translates to: NSSCCLLCGSNKCSGRAFCSLDI*EMTTGM
Trigger: CATCCCGGTTGTCATTTCCAAAATATCTAAGGAGCA...GAAAGCTCTGCCACTACACTTGTTGCTGCCACATAGTAGGCAACAACTGGAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp GAAGTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGGAGGTACCACTGCTTaGGTCACTTGGAGCACATGC +
Preference number: 5 (lower is better)
Translates to: EVASCLKADTNRALVKNEGGTTA*VTWSTC
Trigger: GCATGTGCTCCAAGTGACCAAAGCAGTGGTACCTCC...TTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp GATGATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGAATCCACAGCAACAACTaGGAAAGCGTTCTGCCGACT +
Preference number: 5 (lower is better)
Translates to: DDCESLCECYNQIQVLERIHSNN*ESVLPT
Trigger: AGTCGGCAGAACGCTTTCCAAGTTGTTGCTGTGGAT...TCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp ACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTATCCTGGTAGTTAGATGCTATTGCTaGGAGCCAATCCATGCAGTC +
Preference number: 5 (lower is better)
Translates to: TLHQSILVTKHDGSCILVVRCYC*EPIHAV
Trigger: GACTGCATGGATTGGCTCCAAGCAATAGCATCTAAC...TACCAGGATACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp CTATGTGGCAGCAACAAGTGTAGTGGCAGAGCTTTCAGAAGAGATGATAGAGGCAATTTGATTTTGCTTTaGCCGTCATCTGATGAGCCT +
Preference number: 5 (lower is better)
Translates to: LCGSNKCSGRAFRRDDRGNLILL*PSSDEP
Trigger: AGGCTCATCAGATGACGGCAAAAGCAAAATCAAATT...GCCTCTATCATCTCTTCTGAAAGCTCTGCCACTACACTTGTTGCTGCCACATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp GCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATGCCACTGCTTTGGTCACTaGGAGCACATGCACAGTCTT +
Preference number: 5 (lower is better)
Translates to: ASCLKADTNRALVKNEECHCFGH*EHMHSL
Trigger: AAGACTGTGCATGTGCTCCAAGTGACCAAAGCAGTG...GCATTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp TCAGTGAAATTCAAAATTATCATAGCTCATGTGTTTGGTTGCTCTAGTAAGCAGGGAGGTACCACTGCTTaGGTCACTTGGAGCACATGC +
Preference number: 5 (lower is better)
Translates to: SVKFKIIIAHVFGCSSKQGGTTA*VTWSTC
Trigger: GCATGTGCTCCAAGTGACCAAAGCAGTGGTACCTCC...CTGCTTACTAGAGCAACCAAACACATGAGCTATGATAATTTTGAATTTCACTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp GATGATTGTGAGTCACTTTGTGAGTGCTACAATCAAATCCAGGTCCTTGAAAGAGTTAGATGCTATTGCTaGGAGCCAATCCATGCAGTC +
Preference number: 5 (lower is better)
Translates to: DDCESLCECYNQIQVLERVRCYC*EPIHAV
Trigger: GACTGCATGGATTGGCTCCAAGCAATAGCATCTAAC...TCTTTCAAGGACCTGGATTTGATTGTAGCACTCACAAAGTGACTCACAATCATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp ACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTATCCTGGTATGCTCCTTAGATATTTaGGAAATGACAACCGGGATG +
Preference number: 5 (lower is better)
Translates to: TLHQSILVTKHDGSCILVCSLDI*EMTTGM
Trigger: CATCCCGGTTGTCATTTCCAAAATATCTAAGGAGCA...TACCAGGATACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp TCAGTGAAATTCAAAATTATCATAGCTCATGTGTTTGGTTGCTCTAGTAAGCAGATCCACAGCAACAACTaGGAAAGCGTTCTGCCGACT +
Preference number: 5 (lower is better)
Translates to: SVKFKIIIAHVFGCSSKQIHSNN*ESVLPT
Trigger: AGTCGGCAGAACGCTTTCCAAGTTGTTGCTGTGGAT...CTGCTTACTAGAGCAACCAAACACATGAGCTATGATAATTTTGAATTTCACTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp GTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAAGTTAGATGCTATTGCTaGGAGCCAATCCATGCAGTC +
Preference number: 5 (lower is better)
Translates to: VASCLKADTNRALVKNEEVRCYC*EPIHAV
Trigger: GACTGCATGGATTGGCTCCAAGCAATAGCATCTAAC...TTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp ATTTACATACTTTACACCAATCAATCCTTGTCACCAAACATGATGGCAGCTGTACGACAGCTCTGCTCTTaGCTCCTTAGATATTTTGGA +
Preference number: 5 (lower is better)
Translates to: IYILYTNQSLSPNMMAAVRQLCS*LLRYFG
Trigger: TCCAAAATATCTAAGGAGCAAAGAGCAGAGCTGTCG...TACAGCTGCCATCATGTTTGGTGACAAGGATTGATTGGTGTAAAGTATGTAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000140295.8
ENSMUST00000140302.8
CDS-3UTR CAA 90 bp GTAGCTAGTTGTTTAAAAGCAGACACCAACAGAGCCTTAGTAAAGAATGAAGAATGCTCCTTAGATATTTaGGAAATGACAACCGGGATG +
Preference number: 5 (lower is better)
Translates to: VASCLKADTNRALVKNEECSLDI*EMTTGM
Trigger: CATCCCGGTTGTCATTTCCAAAATATCTAAGGAGCA...TTCTTCATTCTTTACTAAGGCTCTGTTGGTGTCTGCTTTTAAACAACTAGCTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS-3UTR CAA 90 bp TCAGTGAAATTCAAAATTATCATAGCTCATGTGTTTGGTTGCTCTAGTAAGCAGCGACAGCTCTGCTCTTaGCTCCTTAGATATTTTGGA +
Preference number: 5 (lower is better)
Translates to: SVKFKIIIAHVFGCSSKQRQLCS*LLRYFG
Trigger: TCCAAAATATCTAAGGAGCAAAGAGCAGAGCTGTCG...CTGCTTACTAGAGCAACCAAACACATGAGCTATGATAATTTTGAATTTCACTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140295.8
CDS-3UTR CAA 90 bp TCAGTGAAATTCAAAATTATCATAGCTCATGTGTTTGGTTGCTCTAGTAAGCAGAATTTGATTTTGCTTTaGCCGTCATCTGATGAGCCT +
Preference number: 5 (lower is better)
Translates to: SVKFKIIIAHVFGCSSKQNLILL*PSSDEP
Trigger: AGGCTCATCAGATGACGGCAAAAGCAAAATCAAATT...CTGCTTACTAGAGCAACCAAACACATGAGCTATGATAATTTTGAATTTCACTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS CCA 72 bp CACACCACCGCTTCTCCCACCTCAGGCCTGGAGATGTaGGCCACGAAGAGCAGGAAAGCGTGTCTGTGTTAT +
Preference number: 6 (lower is better)
Translates to: HTTASPTSGLEM*ATKSRKACLCY
Trigger: ATAACACAGACACGCTTTCCTGCTCTTCGTGGCCCACATCTCCAGGCCTGAGGTGGGAGAAGCGGTGGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS CAA 90 bp GAGGCACTGAAGAATTCCACTGCAGACTCCATCCACAGCAACAACTaGGAAAGCGTTCTGCCGACTCAGGTCAGTCCCGGGCACATACTG +
Preference number: 6 (lower is better)
Translates to: EALKNSTADSIHSNN*ESVLPTQVSPGHIL
Trigger: CAGTATGTGCCCGGGACTGACCTGAGTCGGCAGAACGCTTTCCAAGTTGTTGCTGTGGATGGAGTCTGCAGTGGAATTCTTCAGTGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS GCA 72 bp TGGTCACCGTTCTTTCCAGACACACACAGCACATCCTaGTCCTGTAGCATCAACAGGTCTCTGGCAAGGTGT +
Preference number: 6 (lower is better)
Translates to: WSPFFPDTHSTS*SCSINRSLARC
Trigger: ACACCTTGCCAGAGACCTGTTGATGCTACAGGAGCAGGATGTGCTGTGTGTGTCTGGAAAGAACGGTGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144593.8
CDS TCA 72 bp GTCAGGGTCACTTCCTCCCCAGCATTCCGAAGAACCTaGACCACCTCCTCATGTCTGCATTTCCTCACATTA +
Preference number: 6 (lower is better)
Translates to: VRVTSSPAFRRT*TTSSCLHFLTL
Trigger: TAATGTGAGGAAATGCAGACATGAGGAGGTGGTTCAGGTTCTTCGGAATGCTGGGGAGGAAGTGACCCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
CDS TCA 72 bp TGGAGCCAATCCATGCAGTCTTCAGCAGAGAGGCACTaGAGAATTCCACTGCAGACTCCATCCACAGCAACA +
Preference number: 6 (lower is better)
Translates to: WSQSMQSSAERH*RIPLQTPSTAT
Trigger: TGTTGCTGTGGATGGAGTCTGCAGTGGAATTCTTCAGTGCCTCTCTGCTGAAGACTGCATGGATTGGCTCCA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
CDS GCA 72 bp GTAAGCCACTGTCACAAAGAGGAGAGGAGGTACCACTaGTTTGGTCACTTGGAGCACATGCACAGTCTTCAT +
Preference number: 6 (lower is better)
Translates to: VSHCHKEERRYH*FGHLEHMHSLH
Trigger: ATGAAGACTGTGCATGTGCTCCAAGTGACCAAAGCAGTGGTACCTCCTCTCCTCTTTGTGACAGTGGCTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS GCA 72 bp TGCAGTCTTCAGCAGAGAGGCACTGAAGAATTCCACTaGAGACTCCATCCACAGCAACAACTTGGAAAGCGT +
Preference number: 6 (lower is better)
Translates to: CSLQQRGTEEFH*RLHPQQQLGKR
Trigger: ACGCTTTCCAAGTTGTTGCTGTGGATGGAGTCTGCAGTGGAATTCTTCAGTGCCTCTCTGCTGAAGACTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000191683.6
CDS CAA 72 bp GCCACTGTCACAAAGAGGAGAGGAGGTACCACTGCTTaGGTCACTTGGAGCACATGCACAGTCTTCATTAAC +
Preference number: 6 (lower is better)
Translates to: ATVTKRRGGTTA*VTWSTCTVFIN
Trigger: GTTAATGAAGACTGTGCATGTGCTCCAAGTGACCAAAGCAGTGGTACCTCCTCTCCTCTTTGTGACAGTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS TCA 72 bp AGCAGGAAAGCGTGTCTGTGTTATTTGGATGGTAGTTaGGGTGTAAGCCACTGTCACAAAGAGGAGAGGAGG +
Preference number: 6 (lower is better)
Translates to: SRKACLCYLDGS*GVSHCHKEERR
Trigger: CCTCCTCTCCTCTTTGTGACAGTGGCTTACACCTCAACTACCATCCAAATAACACAGACACGCTTTCCTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS CCA 72 bp CCACTGTCACAAAGAGGAGAGGAGGTACCACTGCTTTaGTCACTTGGAGCACATGCACAGTCTTCATTAACT +
Preference number: 6 (lower is better)
Translates to: PLSQRGEEVPLL*SLGAHAQSSLT
Trigger: AGTTAATGAAGACTGTGCATGTGCTCCAAGTGACCAAAGCAGTGGTACCTCCTCTCCTCTTTGTGACAGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS CAA 90 bp CTTTGGTCACTTGGAGCACATGCACAGTCTTCATTAACTGGGAGTTaGAGGAAAGCAGGTGCTCGTTTTAAGAATGACACTGTCAGGGTC +
Preference number: 6 (lower is better)
Translates to: LWSLGAHAQSSLTGS*RKAGARFKNDTVRV
Trigger: GACCCTGACAGTGTCATTCTTAAAACGAGCACCTGCTTTCCTCAAACTCCCAGTTAATGAAGACTGTGCATGTGCTCCAAGTGACCAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS CAA 72 bp AGCCCCGACAGCTCTGCTCTTTGCTCCTTAGATATTTaGGAAATGACAACCGGGATGTTATGTTCTGCACCT +
Preference number: 6 (lower is better)
Translates to: SPDSSALCSLDI*EMTTGMLCSAP
Trigger: AGGTGCAGAACATAACATCCCGGTTGTCATTTCCAAAATATCTAAGGAGCAAAGAGCAGAGCTGTCGGGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000115488.3
ENSMUST00000140295.8
ENSMUST00000140302.8
CDS CAA 90 bp AACTTGGAAAGCGTTCTGCATGCACAGTCTTCATTAACTGGGAGTTaGAGGAAAGCAGGTGCTCGTTTTAAGAATGACACTGTCAGGGTC +
Preference number: 6 (lower is better)
Translates to: NLESVLHAQSSLTGS*RKAGARFKNDTVRV
Trigger: GACCCTGACAGTGTCATTCTTAAAACGAGCACCTGCTTTCCTCAAACTCCCAGTTAATGAAGACTGTGCATGCAGAACGCTTTCCAAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
CDS CCA 72 bp TGCTTTGTGAGGTTTGAAATGTTAGATGCTATTGCTTaGAGCCAATCCATGCAGTCTTCAGCAGAGAGGCAC +
Preference number: 6 (lower is better)
Translates to: CFVRFEMLDAIA*SQSMQSSAERH
Trigger: GTGCCTCTCTGCTGAAGACTGCATGGATTGGCTCCAAGCAATAGCATCTAACATTTCAAACCTCACAAAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS CAA 90 bp ATAAAAAGCAGCCCCGACAGCTCTGCTCTTTGCTCCTTAGATATTTaGGAAATGACAACCGGGATGTTATGTTCTGCACCTCCCTTTATG +
Preference number: 6 (lower is better)
Translates to: IKSSPDSSALCSLDI*EMTTGMLCSAPPFM
Trigger: CATAAAGGGAGGTGCAGAACATAACATCCCGGTTGTCATTTCCAAAATATCTAAGGAGCAAAGAGCAGAGCTGTCGGGGCTGCTTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000115488.3
ENSMUST00000140295.8
ENSMUST00000140302.8
CDS CAA 90 bp CCAATAAAAAGCAGCCCCGACAGCTCTCTTTGCTCCTTAGATATTTaGGAAATGACAACCGGGATGTTATGTTCTGCACCTCCCTTTATG +
Preference number: 6 (lower is better)
Translates to: PIKSSPDSSLCSLDI*EMTTGMLCSAPPFM
Trigger: CATAAAGGGAGGTGCAGAACATAACATCCCGGTTGTCATTTCCAAAATATCTAAGGAGCAAAGAGAGCTGTCGGGGCTGCTTTTTATTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000132064.8
ENSMUST00000191683.6
CDS CAA 72 bp CTTGGAGCACATGCACAGTCTTCATTAACTGGGAGTTaGAGGAAAGCAGGTGCTCGTTTTAAGAATGACACT +
Preference number: 6 (lower is better)
Translates to: LGAHAQSSLTGS*RKAGARFKNDT
Trigger: AGTGTCATTCTTAAAACGAGCACCTGCTTTCCTCAAACTCCCAGTTAATGAAGACTGTGCATGTGCTCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000191683.6
CDS CAA 72 bp AGCGTTCTGCATGCACAGTCTTCATTAACTGGGAGTTaGAGGAAAGCAGGTGCTCGTTTTAAGAATGACACT +
Preference number: 6 (lower is better)
Translates to: SVLHAQSSLTGS*RKAGARFKNDT
Trigger: AGTGTCATTCTTAAAACGAGCACCTGCTTTCCTCAAACTCCCAGTTAATGAAGACTGTGCATGCAGAACGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140302.8
CDS TCA 72 bp TCTCTGGCAAGGTGTAACCGGACTTTAAAAGGTTCTTaGTTACCATCTTGTAGCAAGCAAACACCTGTCTTC +
Preference number: 6 (lower is better)
Translates to: SLARCNRTLKGS*LPSCSKQTPVF
Trigger: GAAGACAGGTGTTTGCTTGCTACAAGATGGTAATCAAGAACCTTTTAAAGTCCGGTTACACCTTGCCAGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000115488.3
ENSMUST00000132064.8
ENSMUST00000140295.8
ENSMUST00000140302.8
ENSMUST00000144593.8
ENSMUST00000191683.6