Pregenerated sensors for SNRPN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000102252Ensembl transcript IDs: ENSMUST00000059305.17, ENSMUST00000098402.5
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTAACCAATGCTTGAAGTaGATGTCAGAAATCAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: LLSNRACLEDWKIPCIPCNQCLK*MSEIRK Trigger: TTTCCTGATTTCTGACATTCACTTCAAGCATTGGTT...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR CCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTGCCTACAGGTGGAGGTaGAGTTCCCCGTCCTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCAYRWR*SSPSWR Trigger: CCGCCAGGACGGGGAACTCCACCTCCACCTGTAGGC...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR TCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTTTCCCTGTGGGGTCATaGCCTGCTGGGATGGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCFPVGS*PAGMGL Trigger: GAGGCCCATCCCAGCAGGTCATGACCCCACAGGGAA...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR GCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTCACTCCTCTGCCAGCTaGTCTTCCAACCCCAGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCHSSAS*SSNPRA Trigger: GGCCCTGGGGTTGGAAGAGCAGCTGGCAGAGGAGTG...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR GCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTGCCTGGAGGTGGGGTTaGTCTGCCTACAGGTGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCAWRWG*SAYRWR Trigger: CCTCCACCTGTAGGCAGAGCAACCCCACCTCCAGGC...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR TCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTGGCCTCCAACTCCTCTaGCAGGGCCTGCTAATCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCGLQLL*QGLLIQ Trigger: CTGGATTAGCAGGCCCTGTCAGAGGAGTTGGAGGCC...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR GCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTCTGCTGGCACTCCTCTaGCAGCTGCTCTTCCAACCC | + |
|
Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCLLALL*QLLFQP Trigger: GGGTTGGAAGAGCAGCTGGCAGAGGAGTGCCAGCAG...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR CCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTGGGGTCATGACCTGCTaGGATGGGCCTCCAACTCCT | + |
|
Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCGVMTC*DGPPTP Trigger: AGGAGTTGGAGGCCCATCCCAGCAGGTCATGACCCC...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR CCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTTGCTCTGCCTACAGGTaGAGGTGGAGTTCCCCGTCC | + |
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Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCCSAYR*RWSSPS Trigger: GGACGGGGAACTCCACCTCCACCTGTAGGCAGAGCA...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR GCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTGGGAATAGGTACACCTaGTGGCACTCCTCTGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCGNRYT*WHSSAS Trigger: GCTGGCAGAGGAGTGCCAGCAGGTGTACCTATTCCC...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR GCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTTGTGGGGTCATGACCTaGTGGGATGGGCCTCCAACT | + |
|
Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCCGVMT*WDGPPT Trigger: AGTTGGAGGCCCATCCCAGCAGGTCATGACCCCACA...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR GCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTAGCAACAGCAGCAGCTaGAACAGTGCCTCTTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCSNSSS*NSASSL Trigger: CAGGGAAGAGGCACTGTTGCAGCTGCTGCTGTTGCT...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR CCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTCATAATGCCTGGAGGTaGGGTTGCTCTGCCTACAGG | + |
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Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCHNAWR*GCSAYR Trigger: CCTGTAGGCAGAGCAACCCCACCTCCAGGCATTATG...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR CCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTAATCCAGCAGGAGCCTaGGGAATAGGTACACCTGCT | + |
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Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCNPAGA*GIGTPA Trigger: AGCAGGTGTACCTATTCCCCAGGCTCCTGCTGGATT...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR GCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTAAGATTCTCCCATCTTaGAGGATACATCTCATCCTA | + |
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Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCKILPS*RIHLIL Trigger: TAGGATGAGATGTATCCTGCAAGATGGGAGAATCTT...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR GCA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTACGTTCTGGCTGTTTTaGATTCTTTGGCTTGATCTT | + |
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Preference number: 4 (lower is better) Translates to: LLSNRACLEDWKIPCIPCTFWLF*ILWLDL Trigger: AAGATCAAGCCAAAGAATGCAAAACAGCCAGAACGT...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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| CDS-3UTR CAA 90 bp | CTGCTAAGTAATAGAGCATGTTTGGAAGATTGGAAAATACCTTGCATTCCATGTGAAGATTCTCCCATCTaGCAGGATACATCTCATCCT | + |
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Preference number: 5 (lower is better) Translates to: LLSNRACLEDWKIPCIPCEDSPI*QDTSHP Trigger: AGGATGAGATGTATCCTGCAAGATGGGAGAATCTTC...ACATGGAATGCAAGGTATTTTCCAATCTTCCAAACATGCTCTATTACTTAGCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059305.17 ENSMUST00000098402.5 |
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