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Pregenerated sensors for SNRPG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057278

Ensembl transcript IDs: ENSMUST00000089558.7

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TATAGAATTCTTGTCTTCCTTCACACCGGGCAAGATGCTTCTACTTaGATGCATAAACTCCTTGGAAAGGGTGGTGAGAAAGAGTACCTA +
Preference number: 1 (lower is better)
Translates to: YRILVFLHTGQDAST*MHKLLGKGGEKEYL
Trigger: TAGGTACTCTTTCTCACCACCCTTTCCAAGGAGTTTATGCATTCAAGTAGAAGCATCTTGCCCGGTGTGAAGGAAGACAAGAATTCTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089558.7
3UTR-3UTR CCA 90 bp ACTAAAACTAATGTGTACAAACCACACATCTGTAGCTCATCTCCTCAATGTTATAATCAAACAGGCCTTTaGGGAGGGATGTGGACACTG +
Preference number: 2 (lower is better)
Translates to: TKTNVYKPHICSSSPQCYNQTGL*GGMWTL
Trigger: CAGTGTCCACATCCCTCCCCAAAGGCCTGTTTGATT...ATAACATTGAGGAGATGAGCTACAGATGTGTGGTTTGTACACATTAGTTTTAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089558.7
3UTR-3UTR TCA 90 bp AGAAAAGCAAGAGGCAGATTCCATCCCAAGACAGCTCATGTCATACAAATAAATCAAGATGCTTCTACTTaGATGCATAAACTCCTTGGA +
Preference number: 2 (lower is better)
Translates to: RKARGRFHPKTAHVIQINQDAST*MHKLLG
Trigger: TCCAAGGAGTTTATGCATTCAAGTAGAAGCATCTTG...ATTTATTTGTATGACATGAGCTGTCTTGGGATGGAATCTGCCTCTTGCTTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089558.7
3UTR CCA 72 bp CATGACCTAATTCTACATCACAATCAAACAGGCCTTTaGGGAGGGATGTGGACACTGCTTGCTGAGCACAGG +
Preference number: 3 (lower is better)
Translates to: HDLILHHNQTGL*GGMWTLLAEHR
Trigger: CCTGTGCTCAGCAAGCAGTGTCCACATCCCTCCCCAAAGGCCTGTTTGATTGTGATGTAGAATTAGGTCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089558.7
3UTR GCA 72 bp TCTTCCTTCACACCGGGCAAGATGCTTCTACTTGAATaGATAAACTCCTTGGAAAGGGTGGTGAGAAAGAGT +
Preference number: 3 (lower is better)
Translates to: SSFTPGKMLLLE*INSLERVVRKS
Trigger: ACTCTTTCTCACCACCCTTTCCAAGGAGTTTATGCATTCAAGTAGAAGCATCTTGCCCGGTGTGAAGGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089558.7
3UTR TCA 72 bp TCCCAAGAATTCCACATTAGGAGCCTAACTCAAGTTTaGAGTCACAGGAGGTCAAAGGCACTAAAACTAATG +
Preference number: 3 (lower is better)
Translates to: SQEFHIRSLTQV*SHRRSKALKLM
Trigger: CATTAGTTTTAGTGCCTTTGACCTCCTGTGACTTCAAACTTGAGTTAGGCTCCTAATGTGGAATTCTTGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089558.7
3UTR-3UTR CAA 90 bp AGAAAAGCAAGAGGCAGATTCCATCCCAAGACAGCTCATGTCATACAAATAAATAATGTTATAGAATTCTaGTCTTCCTTCACACCGGGC +
Preference number: 3 (lower is better)
Translates to: RKARGRFHPKTAHVIQINNVIEF*SSFTPG
Trigger: GCCCGGTGTGAAGGAAGACAAGAATTCTATAACATT...ATTTATTTGTATGACATGAGCTGTCTTGGGATGGAATCTGCCTCTTGCTTTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089558.7
CDS-3UTR TCA 90 bp CTCAATGTTATAGAATTCTTGTCTTCCTTCACACCGGGCAAGATGCTTCTACTTTGCTGTTTCCTCGGATaGCCACCATGCCAATGTTGT +
Preference number: 4 (lower is better)
Translates to: LNVIEFLSSFTPGKMLLLCCFLG*PPCQCC
Trigger: ACAACATTGGCATGGTGGTCATCCGAGGAAACAGCA...AAGTAGAAGCATCTTGCCCGGTGTGAAGGAAGACAAGAATTCTATAACATTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089558.7
3UTR CAA 72 bp ACATCTGTAGCTCATCTCCTCAATGTTATAGAATTCTaGTCTTCCTTCACACCGGGCAAGATGCTTCTACTT +
Preference number: 4 (lower is better)
Translates to: TSVAHLLNVIEF*SSFTPGKMLLL
Trigger: AAGTAGAAGCATCTTGCCCGGTGTGAAGGAAGACAAGAATTCTATAACATTGAGGAGATGAGCTACAGATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089558.7
CDS-3UTR CAA 90 bp ACTAAAACTAATGTGTACAAACCACACATCTGTAGCTCATCTCCTCAATGTTATGCCCCGCAGTATTCCTaGGACATGCCTGCCACCGTT +
Preference number: 5 (lower is better)
Translates to: TKTNVYKPHICSSSPQCYAPQYS*DMPATV
Trigger: AACGGTGGCAGGCATGTCCAAGGAATACTGCGGGGC...ATAACATTGAGGAGATGAGCTACAGATGTGTGGTTTGTACACATTAGTTTTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089558.7