Pregenerated sensors for SNRPF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020018Ensembl transcript IDs: ENSMUST00000020203.7
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTTATGGATGTTACAAGTGGTTTGGAAACCTTAAACAACACTGCTaGTTTTATGAGGTCTCAGTTAAACCAGCGGTGGGATTACAAAAA | + |
|
Preference number: 1 (lower is better) Translates to: LYGCYKWFGNLKQHC*FYEVSVKPAVGLQK Trigger: TTTTTGTAATCCCACCGCTGGTTTAACTGAGACCTCATAAAAGCAGCAGTGTTGTTTAAGGTTTCCAAACCACTTGTAACATCCATAAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020203.7 |
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| 3UTR GCA 72 bp | TGTTACAAGTGGTTTGGAAACCTTAAACAACACTGCTaGTTTTATGAGGTCTCAGTTAAACCAGCGGTGGGA | + |
|
Preference number: 3 (lower is better) Translates to: CYKWFGNLKQHC*FYEVSVKPAVG Trigger: TCCCACCGCTGGTTTAACTGAGACCTCATAAAAGCAGCAGTGTTGTTTAAGGTTTCCAAACCACTTGTAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020203.7 |
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| CDS-3UTR CCA 90 bp | GGTTTGGAAACCTTAAACAACACTGCTGCTTTTATGAGGTCTCAGTTAAACCAGAAGTTTCACCATCACTaGCTTCCCTGTCAGCCCATT | + |
|
Preference number: 4 (lower is better) Translates to: GLETLNNTAAFMRSQLNQKFHHH*LPCQPI Trigger: AATGGGCTGACAGGGAAGCCAGTGATGGTGAAACTT...CTGGTTTAACTGAGACCTCATAAAAGCAGCAGTGTTGTTTAAGGTTTCCAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020203.7 |
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| CDS-3UTR CAA 90 bp | CTTAAACAACACTGCTGCTTTTATGAGGTCTCAGTTAAACCAGCGGTGGGATTATTCCCTGTCAGCCCATaGAGAAAGGGCTTGGGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: LKQHCCFYEVSVKPAVGLFPVSP*RKGLGL Trigger: CAACCCCAAGCCCTTTCTCAATGGGCTGACAGGGAA...TAATCCCACCGCTGGTTTAACTGAGACCTCATAAAAGCAGCAGTGTTGTTTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020203.7 |
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| CDS-3UTR CAA 90 bp | GGTTTGGAAACCTTAAACAACACTGCTGCTTTTATGAGGTCTCAGTTAAACCAGCCATTGAGAAAGGGCTaGGGGTTGAGGGGTAGACTC | + |
|
Preference number: 5 (lower is better) Translates to: GLETLNNTAAFMRSQLNQPLRKG*GLRGRL Trigger: GAGTCTACCCCTCAACCCCAAGCCCTTTCTCAATGG...CTGGTTTAACTGAGACCTCATAAAAGCAGCAGTGTTGTTTAAGGTTTCCAAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020203.7 |
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