Pregenerated sensors for SNRPE (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090553

Ensembl transcript IDs: ENSMUST00000164096.2, ENSMUST00000164574.2, ENSMUST00000172079.2

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CCA 90 bp	CATCCTTGGCAAGGCATGGTTGCGAATGTCTATGATCCCAGCACTTaGGAGGGGGAGGCAGGAAGGCCAGGAGTTCAATCTGTCACTCTC	+
Preference number: 1 (lower is better) Translates to: HPWQGMVANVYDPST*EGEAGRPGVQSVTL Trigger: GAGAGTGACAGATTGAACTCCTGGCCTTCCTGCCTCCCCCTCCCAAGTGCTGGGATCATAGACATTCGCAACCATGCCTTGCCAAGGATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164096.2
3UTR TCA 90 bp	ACATCAGATTTAACATCCTTGGCAAGGCATGGTTGCGAATGTCTATaGTCCCAGCACTTGGGAGGGGGAGGCAGGAAGGCCAGGAGTTCA	+
Preference number: 1 (lower is better) Translates to: TSDLTSLARHGCECL*SQHLGGGGRKARSS Trigger: TGAACTCCTGGCCTTCCTGCCTCCCCCTCCCAAGTGCTGGGATCATAGACATTCGCAACCATGCCTTGCCAAGGATGTTAAATCTGATGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164096.2
3UTR-3UTR TCA 90 bp	TCTATGATCCCAGCACTTGGGAGGGGGAGGCAGGAAGGCCAGGAGTTCAATCTGCTGAGACCCTATCAATaGACAAAACAAAGGAGTGGG	+
Preference number: 2 (lower is better) Translates to: SMIPALGRGRQEGQEFNLLRPYQ*TKQRSG Trigger: CCCACTCCTTTGTTTTGTTCATTGATAGGGTCTCAG...CAGATTGAACTCCTGGCCTTCCTGCCTCCCCCTCCCAAGTGCTGGGATCATAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164096.2
CDS GCA 72 bp	GGCTACATCCGCAAGCACAAACGACCGCCGGGAGCATaGGCTCCCTCCCCACCGCCCTCGTTTCTCCAACCT	+
Preference number: 6 (lower is better) Translates to: GYIRKHKRPPGA*APSPPPSFLQP Trigger: AGGTTGGAGAAACGAGGGCGGTGGGGAGGGAGCGCATGCTCCCGGCGGTCGTTTGTGCTTGCGGATGTAGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164574.2 ENSMUST00000172079.2