Pregenerated sensors for SNRPD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020180Ensembl transcript IDs: ENSMUST00000020397.11, ENSMUST00000220229.2
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGTGATGAAGCGCACATGGCCTACTGGGTGGGGCTTGACGGGTCATaGTGCAGGCTTATGCTTGCACCCAACCCTGAGACGACACATGTC | + |
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Preference number: 1 (lower is better) Translates to: GDEAHMAYWVGLDGS*CRLMLAPNPETTHV Trigger: GACATGTGTCGTCTCAGGGTTGGGTGCAAGCATAAGCCTGCAGCATGACCCGTCAAGCCCCACCCAGTAGGCCATGTGCGCTTCATCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR GCA 90 bp | GATGAAGCGCACATGGCCTACTGGGTGGGGCTTGACGGGTCATGCTaGAGGCTTATGCTTGCACCCAACCCTGAGACGACACATGTCAAC | + |
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Preference number: 1 (lower is better) Translates to: DEAHMAYWVGLDGSC*RLMLAPNPETTHVN Trigger: GTTGACATGTGTCGTCTCAGGGTTGGGTGCAAGCATAAGCCTGCAGCATGACCCGTCAAGCCCCACCCAGTAGGCCATGTGCGCTTCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR CCA 90 bp | GATGTTAACATTTCACCACATAAACAGCTGGTGATGAAGCGCACATaGCCTACTGGGTGGGGCTTGACGGGTCATGCTGCAGGCTTATGC | + |
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Preference number: 1 (lower is better) Translates to: DVNISPHKQLVMKRT*PTGWGLTGHAAGLC Trigger: GCATAAGCCTGCAGCATGACCCGTCAAGCCCCACCCAGTAGGCCATGTGCGCTTCATCACCAGCTGTTTATGTGGTGAAATGTTAACATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR TCA 90 bp | GATGAGCTAAAAGCTGGAGGGGGCGGGCAGAATTACTGTAAACCCTaGCAACCTAAGTTTGATTCCAAAGAAGATGGGAGAGCAACTCCC | + |
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Preference number: 1 (lower is better) Translates to: DELKAGGGGQNYCKP*QPKFDSKEDGRATP Trigger: GGGAGTTGCTCTCCCATCTTCTTTGGAATCAAACTTAGGTTGTCAGGGTTTACAGTAATTCTGCCCGCCCCCTCCAGCTTTTAGCTCATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR CCA 90 bp | ACACTGAAAACAGGAGTTGAGCTGAGGAAGGGGATGGCAAGAACTTaGGGTGACAACAGCAGGGTAAACCAGTTCAGACTACAGATAAAG | + |
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Preference number: 1 (lower is better) Translates to: TLKTGVELRKGMART*GDNSRVNQFRLQIK Trigger: CTTTATCTGTAGTCTGAACTGGTTTACCCTGCTGTTGTCACCCCAAGTTCTTGCCATCCCCTTCCTCAGCTCAACTCCTGTTTTCAGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR GCA 90 bp | GCTGGCATCTCCCCAGTACATGTCCAAAGGTGTCAGATTCTAACCTaGTGCCAAAGCAAACTACAAACACGAACACACAGTTCTTATTTC | + |
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Preference number: 1 (lower is better) Translates to: AGISPVHVQRCQILT*CQSKLQTRTHSSYF Trigger: GAAATAAGAACTGTGTGTTCGTGTTTGTAGTTTGCTTTGGCAGCAGGTTAGAATCTGACACCTTTGGACATGTACTGGGGAGATGCCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR TCA 90 bp | TTGAGTTCAATTCTCAGCAACCACATGGTGGCTCACAACCATCTATaGTGGTGTTCTCTTTTGGTGTGCAGGCATATATGCAAGCAGAAC | + |
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Preference number: 1 (lower is better) Translates to: LSSILSNHMVAHNHL*WCSLLVCRHICKQN Trigger: GTTCTGCTTGCATATATGCCTGCACACCAAAAGAGAACACCATCATAGATGGTTGTGAGCCACCATGTGGTTGCTGAGAATTGAACTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR CCA 90 bp | GCACACGGGACTTACTCCCAGGGAACAGTCTTCAGCACTACTCCGTaGCTTACTAGTCATAATTTAACCAGTCATGATATAACAAGTATG | + |
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Preference number: 1 (lower is better) Translates to: AHGTYSQGTVFSTTP*LTSHNLTSHDITSM Trigger: CATACTTGTTATATCATGACTGGTTAAATTATGACTAGTAAGCCACGGAGTAGTGCTGAAGACTGTTCCCTGGGAGTAAGTCCCGTGTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR CAA 90 bp | CATAAACAGCTGGTGATGAAGCGCACATGGCCTACTGGGTGGGGCTaGACGGGTCATGCTGCAGGCTTATGCTTGCACCCAACCCTGAGA | + |
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Preference number: 2 (lower is better) Translates to: HKQLVMKRTWPTGWG*TGHAAGLCLHPTLR Trigger: TCTCAGGGTTGGGTGCAAGCATAAGCCTGCAGCATGACCCGTCAAGCCCCACCCAGTAGGCCATGTGCGCTTCATCACCAGCTGTTTATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR CCA 90 bp | ACTTGCCTGAGTGCTGGGATTATGGTCTATACCACCATGCCCAGCCTGAAAGAACAACCACCCCACCCCTaGCAACCCACAGCCATGGTG | + |
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Preference number: 2 (lower is better) Translates to: TCLSAGIMVYTTMPSLKEQPPHP*QPTAMV Trigger: CACCATGGCTGTGGGTTGCCAGGGGTGGGGTGGTTG...TTCTTTCAGGCTGGGCATGGTGGTATAGACCATAATCCCAGCACTCAGGCAAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR GCA 90 bp | AAAGCCAAGATAAAAGTCAAGATACCAGCAGGTGGCCGCACACGGGACTTACTCCTGCTGCTTGAAGAGTaGTGGCATCTCCCCAGTACA | + |
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Preference number: 2 (lower is better) Translates to: KAKIKVKIPAGGRTRDLLLLLEE*WHLPST Trigger: TGTACTGGGGAGATGCCAGCACTCTTCAAGCAGCAG...GAGTAAGTCCCGTGTGCGGCCACCTGCTGGTATCTTGACTTTTATCTTGGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR CCA 90 bp | ACTTGCCTGAGTGCTGGGATTATGGTCTATACCACCATGCCCAGCCTGAAAGAACTGTGTCAGGTTAGCTaGGAAAGTGCCACACTGAGT | + |
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Preference number: 2 (lower is better) Translates to: TCLSAGIMVYTTMPSLKELCQVS*ESATLS Trigger: ACTCAGTGTGGCACTTTCCCAGCTAACCTGACACAG...TTCTTTCAGGCTGGGCATGGTGGTATAGACCATAATCCCAGCACTCAGGCAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR TCA 90 bp | GGAACACAAATGATAGTGCACAAAACTGGGACAGCAAAGGCTAAGCAGACACATTCACACACTGCTGCTTaGAGAGTGCTGGCATCTCCC | + |
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Preference number: 2 (lower is better) Translates to: GTQMIVHKTGTAKAKQTHSHTAA*RVLASP Trigger: GGGAGATGCCAGCACTCTTCAAGCAGCAGTGTGTGA...ATGTGTCTGCTTAGCCTTTGCTGTCCCAGTTTTGTGCACTATCATTTGTGTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR GCA 90 bp | AACATTTCACCACATAAACAGCTGGTGATGAAGCGCACATGGCCTACTGGGTGGGTGTGCAGGCATATATaGAAGCAGAACGCTGCATAC | + |
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Preference number: 2 (lower is better) Translates to: NISPHKQLVMKRTWPTGWVCRHI*KQNAAY Trigger: GTATGCAGCGTTCTGCTTGCATATATGCCTGCACAC...CCACCCAGTAGGCCATGTGCGCTTCATCACCAGCTGTTTATGTGGTGAAATGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR CCA 90 bp | TGCAGGAAAGGAGCACACCAAACTATAACCACCACCAAAGACTCCATTAGGCCACTGCTTGAAGAGTGCTaGCATCTCCCCAGTACATGT | + |
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Preference number: 2 (lower is better) Translates to: CRKGAHQTITTTKDSIRPLLEEC*HLPSTC Trigger: ACATGTACTGGGGAGATGCCAGCACTCTTCAAGCAG...TGGCCTAATGGAGTCTTTGGTGGTGGTTATAGTTTGGTGTGCTCCTTTCCTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR TCA 90 bp | AACATTTCACCACATAAACAGCTGGTGATGAAGCGCACATGGCCTACTGGGTGGTTACTGATCAGAGCATaGGTCATCTTCACAGGTCAG | + |
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Preference number: 2 (lower is better) Translates to: NISPHKQLVMKRTWPTGWLLIRA*VIFTGQ Trigger: CTGACCTGTGAAGATGACTCATGCTCTGATCAGTAA...CCACCCAGTAGGCCATGTGCGCTTCATCACCAGCTGTTTATGTGGTGAAATGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR GCA 90 bp | TACTCCCAGGGAACAGTCTTCAGCACTACTCCGTGGCTTACTAGTCATAATTTACTTCACAGGTCAGGTTaGCTGTGTCAGGTTAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: YSQGTVFSTTPWLTSHNLLHRSG*LCQVSW Trigger: CCAGCTAACCTGACACAGGCAACCTGACCTGTGAAG...TAAATTATGACTAGTAAGCCACGGAGTAGTGCTGAAGACTGTTCCCTGGGAGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR GCA 90 bp | CCTAAGTTTGATTCCAAAGAAGATGGGAGAGCAACTCCCAAAAGTTGTCTTCTGGGGCTTGACGGGTCATaGTGCAGGCTTATGCTTGCA | + |
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Preference number: 2 (lower is better) Translates to: PKFDSKEDGRATPKSCLLGLDGS*CRLMLA Trigger: TGCAAGCATAAGCCTGCAGCATGACCCGTCAAGCCC...CAGAAGACAACTTTTGGGAGTTGCTCTCCCATCTTCTTTGGAATCAAACTTAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR CCA 90 bp | ACTTGCCTGAGTGCTGGGATTATGGTCTATACCACCATGCCCAGCCTGAAAGAATTCTCAGCAACCACATaGTGGCTCACAACCATCTAT | + |
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Preference number: 2 (lower is better) Translates to: TCLSAGIMVYTTMPSLKEFSATT*WLTTIY Trigger: ATAGATGGTTGTGAGCCACCATGTGGTTGCTGAGAA...TTCTTTCAGGCTGGGCATGGTGGTATAGACCATAATCCCAGCACTCAGGCAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR CAA 90 bp | TGCAGGCTTATGCTTGCACCCAACCCTGAGACGACACATGTCAACTaGAATCAGCCCACTAAAGTTGGCATCACACTGAATGAGAAAGAA | + |
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Preference number: 2 (lower is better) Translates to: CRLMLAPNPETTHVN*NQPTKVGITLNEKE Trigger: TTCTTTCTCATTCAGTGTGATGCCAACTTTAGTGGGCTGATTCAAGTTGACATGTGTCGTCTCAGGGTTGGGTGCAAGCATAAGCCTGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR TCA 90 bp | TGCAGGAAAGGAGCACACCAAACTATAACCACCACCAAAGACTCCATTAGGCCATTTGCTCTTCCGTCTTaGGTTCAATTCTCAGCAACC | + |
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Preference number: 2 (lower is better) Translates to: CRKGAHQTITTTKDSIRPFALPS*VQFSAT Trigger: GGTTGCTGAGAATTGAACTCAAGACGGAAGAGCAAA...TGGCCTAATGGAGTCTTTGGTGGTGGTTATAGTTTGGTGTGCTCCTTTCCTGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR GCA 90 bp | AACATTTCACCACATAAACAGCTGGTGATGAAGCGCACATGGCCTACTGGGTGGTGTTCTCTTTTGGTGTaGAGGCATATATGCAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: NISPHKQLVMKRTWPTGWCSLLV*RHICKQ Trigger: CTGCTTGCATATATGCCTGCACACCAAAAGAGAACA...CCACCCAGTAGGCCATGTGCGCTTCATCACCAGCTGTTTATGTGGTGAAATGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR GCA 90 bp | AAAGCCAAGATAAAAGTCAAGATACCAGCAGGTGGCCGCACACGGGACTTACTCAATCAGGAAGACAGGTaGTGGGGAACACAAATGATA | + |
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Preference number: 2 (lower is better) Translates to: KAKIKVKIPAGGRTRDLLNQEDR*WGTQMI Trigger: TATCATTTGTGTTCCCCAGCACCTGTCTTCCTGATT...GAGTAAGTCCCGTGTGCGGCCACCTGCTGGTATCTTGACTTTTATCTTGGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR CCA 90 bp | AGAGCAACTCCCAAAAGTTGTCTTCTGACTTTCACATGTGTGCTGGCAGGCATCTCAGCAACCACATGGTaGCTCACAACCATCTATGAT | + |
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Preference number: 2 (lower is better) Translates to: RATPKSCLLTFTCVLAGISATTW*LTTIYD Trigger: ATCATAGATGGTTGTGAGCCACCATGTGGTTGCTGA...GATGCCTGCCAGCACACATGTGAAAGTCAGAAGACAACTTTTGGGAGTTGCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR CCA 90 bp | GGAACACAAATGATAGTGCACAAAACTGGGACAGCAAAGGCTAAGCAGACACATAGAGGACTGAAGAGATaGCTCGGAGGTTCAGAGTAC | + |
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Preference number: 2 (lower is better) Translates to: GTQMIVHKTGTAKAKQTHRGLKR*LGGSEY Trigger: GTACTCTGAACCTCCGAGCCATCTCTTCAGTCCTCT...ATGTGTCTGCTTAGCCTTTGCTGTCCCAGTTTTGTGCACTATCATTTGTGTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR TCA 90 bp | AACCCTGAGACGACACATGTCAACTTGAATCAGCCCACTAAAGTTGGCATCACAAAAAACAAAGAGGACTaGAGAGATGGCTCGGAGGTT | + |
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Preference number: 2 (lower is better) Translates to: NPETTHVNLNQPTKVGITKNKED*RDGSEV Trigger: AACCTCCGAGCCATCTCTTCAGTCCTCTTTGTTTTT...TGTGATGCCAACTTTAGTGGGCTGATTCAAGTTGACATGTGTCGTCTCAGGGTT 46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR CCA 90 bp | AAGGGGATGGCAAGAACTTGGGGTGACAACAGCAGGGTAAACCAGTTCAGACTAAAGTATGGATGGCAGTaGCAGAATTACAATCAGGAA | + |
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Preference number: 2 (lower is better) Translates to: KGMARTWGDNSRVNQFRLKYGWQ*QNYNQE Trigger: TTCCTGATTGTAATTCTGCCACTGCCATCCATACTT...TAGTCTGAACTGGTTTACCCTGCTGTTGTCACCCCAAGTTCTTGCCATCCCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR GCA 90 bp | CCTAAGTTTGATTCCAAAGAAGATGGGAGAGCAACTCCCAAAAGTTGTCTTCTGCTCTTTATCACACACTaGTGCTTGAAGAGTGCTGGC | + |
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Preference number: 2 (lower is better) Translates to: PKFDSKEDGRATPKSCLLLFITH*CLKSAG Trigger: GCCAGCACTCTTCAAGCAGCAGTGTGTGATAAAGAG...CAGAAGACAACTTTTGGGAGTTGCTCTCCCATCTTCTTTGGAATCAAACTTAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR GCA 90 bp | AACCCTGAGACGACACATGTCAACTTGAATCAGCCCACTAAAGTTGGCATCACAGTTCAGAGTACTGTTTaGTCTTCCGTCTTGAGTTCA | + |
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Preference number: 2 (lower is better) Translates to: NPETTHVNLNQPTKVGITVQSTV*SSVLSS Trigger: TGAACTCAAGACGGAAGAGCAAACAGTACTCTGAAC...TGTGATGCCAACTTTAGTGGGCTGATTCAAGTTGACATGTGTCGTCTCAGGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR GCA 90 bp | AACCCTGAGACGACACATGTCAACTTGAATCAGCCCACTAAAGTTGGCATCACAAATGAGAAAGAAAGCTaGAGGAAAGGAGCACACCAA | + |
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Preference number: 2 (lower is better) Translates to: NPETTHVNLNQPTKVGITNEKES*RKGAHQ Trigger: TTGGTGTGCTCCTTTCCTGCAGCTTTCTTTCTCATT...TGTGATGCCAACTTTAGTGGGCTGATTCAAGTTGACATGTGTCGTCTCAGGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR GCA 72 bp | GCGCACATGGCCTACTGGGTGGGGCTTGACGGGTCATaGTGCAGGCTTATGCTTGCACCCAACCCTGAGACG | + |
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Preference number: 3 (lower is better) Translates to: AHMAYWVGLDGS*CRLMLAPNPET Trigger: CGTCTCAGGGTTGGGTGCAAGCATAAGCCTGCAGCATGACCCGTCAAGCCCCACCCAGTAGGCCATGTGCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR GCA 72 bp | CACATGGCCTACTGGGTGGGGCTTGACGGGTCATGCTaGAGGCTTATGCTTGCACCCAACCCTGAGACGACA | + |
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Preference number: 3 (lower is better) Translates to: HMAYWVGLDGSC*RLMLAPNPETT Trigger: TGTCGTCTCAGGGTTGGGTGCAAGCATAAGCCTGCAGCATGACCCGTCAAGCCCCACCCAGTAGGCCATGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR GCA 72 bp | ACTGGGTGGGGCTTGACGGGTCATGCTGCAGGCTTATaGTTGCACCCAACCCTGAGACGACACATGTCAACT | + |
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Preference number: 3 (lower is better) Translates to: TGWGLTGHAAGL*LHPTLRRHMST Trigger: AGTTGACATGTGTCGTCTCAGGGTTGGGTGCAAGCATAAGCCTGCAGCATGACCCGTCAAGCCCCACCCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR CCA 72 bp | ATTTCACCACATAAACAGCTGGTGATGAAGCGCACATaGCCTACTGGGTGGGGCTTGACGGGTCATGCTGCA | + |
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Preference number: 3 (lower is better) Translates to: ISPHKQLVMKRT*PTGWGLTGHAA Trigger: TGCAGCATGACCCGTCAAGCCCCACCCAGTAGGCCATGTGCGCTTCATCACCAGCTGTTTATGTGGTGAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR CCA 72 bp | CTATGTAAAGAGAATCTGTGTCAACCACCCCACCCCTaGCAACCCACAGCCATGGTGGAGGGTAAATGCTGG | + |
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Preference number: 3 (lower is better) Translates to: LCKENLCQPPHP*QPTAMVEGKCW Trigger: CCAGCATTTACCCTCCACCATGGCTGTGGGTTGCCAGGGGTGGGGTGGTTGACACAGATTCTCTTTACATAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR CAA 90 bp | AACATTTCACCACATAAACAGCTGGTGATGAAGCGCACATGGCCTACTGGGTGGGCTGCAGGCTTATGCTaGCACCCAACCCTGAGACGA | + |
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Preference number: 3 (lower is better) Translates to: NISPHKQLVMKRTWPTGWAAGLC*HPTLRR Trigger: TCGTCTCAGGGTTGGGTGCAAGCATAAGCCTGCAGC...CCACCCAGTAGGCCATGTGCGCTTCATCACCAGCTGTTTATGTGGTGAAATGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR GCA 72 bp | ACTGATCAGAGCATGAGTCATCTTCACAGGTCAGGTTaGCTGTGTCAGGTTAGCTGGGAAAGTGCCACACTG | + |
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Preference number: 3 (lower is better) Translates to: TDQSMSHLHRSG*LCQVSWESATL Trigger: CAGTGTGGCACTTTCCCAGCTAACCTGACACAGGCAACCTGACCTGTGAAGATGACTCATGCTCTGATCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR GCA 72 bp | CACCCCTGGCAACCCACAGCCATGGTGGAGGGTAAATaGTGGAGGGTAAGGATGTTAACATTTCACCACATA | + |
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Preference number: 3 (lower is better) Translates to: HPWQPTAMVEGK*WRVRMLTFHHI Trigger: TATGTGGTGAAATGTTAACATCCTTACCCTCCAGCATTTACCCTCCACCATGGCTGTGGGTTGCCAGGGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR GCA 72 bp | GGATGGCAGTGGCAGAATTACAATCAGGAAGACAGGTaGTGGGGAACACAAATGATAGTGCACAAAACTGGG | + |
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Preference number: 3 (lower is better) Translates to: GWQWQNYNQEDR*WGTQMIVHKTG Trigger: CCCAGTTTTGTGCACTATCATTTGTGTTCCCCAGCACCTGTCTTCCTGATTGTAATTCTGCCACTGCCATCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR CCA 72 bp | TGCACTCTTTATCACACACTGCTGCTTGAAGAGTGCTaGCATCTCCCCAGTACATGTCCAAAGGTGTCAGAT | + |
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Preference number: 3 (lower is better) Translates to: CTLYHTLLLEEC*HLPSTCPKVSD Trigger: ATCTGACACCTTTGGACATGTACTGGGGAGATGCCAGCACTCTTCAAGCAGCAGTGTGTGATAAAGAGTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR CAA 90 bp | AAGGGGATGGCAAGAACTTGGGGTGACAACAGCAGGGTAAACCAGTTCAGACTAAGCAACTCCCAAAAGTaGTCTTCTGACTTTCACATG | + |
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Preference number: 3 (lower is better) Translates to: KGMARTWGDNSRVNQFRLSNSQK*SSDFHM Trigger: CATGTGAAAGTCAGAAGACAACTTTTGGGAGTTGCT...TAGTCTGAACTGGTTTACCCTGCTGTTGTCACCCCAAGTTCTTGCCATCCCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR CAA 90 bp | AAGGGGATGGCAAGAACTTGGGGTGACAACAGCAGGGTAAACCAGTTCAGACTACCTGACAACCTAAGTTaGATTCCAAAGAAGATGGGA | + |
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Preference number: 3 (lower is better) Translates to: KGMARTWGDNSRVNQFRLPDNLS*IPKKMG Trigger: TCCCATCTTCTTTGGAATCAAACTTAGGTTGTCAGG...TAGTCTGAACTGGTTTACCCTGCTGTTGTCACCCCAAGTTCTTGCCATCCCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR TCA 72 bp | GAAAAGTGCTTGCACTCTTTATCACACACTGCTGCTTaGAGAGTGCTGGCATCTCCCCAGTACATGTCCAAA | + |
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Preference number: 3 (lower is better) Translates to: EKCLHSLSHTAA*RVLASPQYMSK Trigger: TTTGGACATGTACTGGGGAGATGCCAGCACTCTTCAAGCAGCAGTGTGTGATAAAGAGTGCAAGCACTTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR TCA 72 bp | GCTACAGACAGGGTTCCCTCTGGAGCTGTCGAATGCTaGGACACTATGATTACTGTATTACTGATCAGAGCA | + |
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Preference number: 3 (lower is better) Translates to: ATDRVPSGAVEC*DTMITVLLIRA Trigger: TGCTCTGATCAGTAATACAGTAATCATAGTGTCTCAGCATTCGACAGCTCCAGAGGGAACCCTGTCTGTAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR TCA 72 bp | AAAGCTGGAGGGGGCGGGCAGAATTACTGTAAACCCTaGCAACCTAAGTTTGATTCCAAAGAAGATGGGAGA | + |
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Preference number: 3 (lower is better) Translates to: KAGGGGQNYCKP*QPKFDSKEDGR Trigger: TCTCCCATCTTCTTTGGAATCAAACTTAGGTTGTCAGGGTTTACAGTAATTCTGCCCGCCCCCTCCAGCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR CAA 90 bp | GATGGTGTTCTCTTTTGGTGTGCAGGCATATATGCAAGCAGAACGCTGCATACAACTGTGTGGAGCGAGTaGAATATGAGTAGCTACAGA | + |
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Preference number: 3 (lower is better) Translates to: DGVLFWCAGIYASRTLHTTVWSE*NMSSYR Trigger: TCTGTAGCTACTCATATTCAACTCGCTCCACACAGT...TGTATGCAGCGTTCTGCTTGCATATATGCCTGCACACCAAAAGAGAACACCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR TCA 72 bp | ATTCTCAGCAACCACATGGTGGCTCACAACCATCTATaGTGGTGTTCTCTTTTGGTGTGCAGGCATATATGC | + |
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Preference number: 3 (lower is better) Translates to: ILSNHMVAHNHL*WCSLLVCRHIC Trigger: GCATATATGCCTGCACACCAAAAGAGAACACCATCATAGATGGTTGTGAGCCACCATGTGGTTGCTGAGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR TCA 72 bp | CTGTTAGAAATGAAGGCACACTCCGTCTCTTCTGCATaGCATTCGACAGAGGCAGAGATGAACTCAAGCTTT | + |
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Preference number: 3 (lower is better) Translates to: LLEMKAHSVSSA*HSTEAEMNSSF Trigger: AAAGCTTGAGTTCATCTCTGCCTCTGTCGAATGTCATGCAGAAGAGACGGAGTGTGCCTTCATTTCTAACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR TCA 72 bp | GTGCTGGGATTATGGTCTATACCACCATGCCCAGCCTaGAAGAAATGGTTTCCAACACATACTAGCAATCCT | + |
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Preference number: 3 (lower is better) Translates to: VLGLWSIPPCPA*KKWFPTHTSNP Trigger: AGGATTGCTAGTATGTGTTGGAAACCATTTCTTTCAGGCTGGGCATGGTGGTATAGACCATAATCCCAGCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR TCA 72 bp | AAGAAGATGGGAGAGCAACTCCCAAAAGTTGTCTTCTaGCTTTCACATGTGTGCTGGCAGGCATCCTCAAAA | + |
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Preference number: 3 (lower is better) Translates to: KKMGEQLPKVVF*LSHVCWQASSK Trigger: TTTTGAGGATGCCTGCCAGCACACATGTGAAAGTCAGAAGACAACTTTTGGGAGTTGCTCTCCCATCTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR GCA 72 bp | AATCCTGTTAGAAATGAAGGCACACTCCGTCTCTTCTaGATGACATTCGACAGAGGCAGAGATGAACTCAAG | + |
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Preference number: 3 (lower is better) Translates to: NPVRNEGTLRLF*MTFDRGRDELK Trigger: CTTGAGTTCATCTCTGCCTCTGTCGAATGTCATGCAGAAGAGACGGAGTGTGCCTTCATTTCTAACAGGATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR-3UTR CAA 90 bp | ATCACACTGAATGAGAAAGAAAGCTGCAGGAAAGGAGCACACCAAACTATAACCGTTTGCTCTTCCGTCTaGAGTTCAATTCTCAGCAAC | + |
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Preference number: 3 (lower is better) Translates to: ITLNEKESCRKGAHQTITVCSSV*SSILSN Trigger: GTTGCTGAGAATTGAACTCAAGACGGAAGAGCAAAC...GGTTATAGTTTGGTGTGCTCCTTTCCTGCAGCTTTCTTTCTCATTCAGTGTGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR CCA 72 bp | ACTTACTCCCAGGGAACAGTCTTCAGCACTACTCCGTaGCTTACTAGTCATAATTTAACCAGTCATGATATA | + |
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Preference number: 3 (lower is better) Translates to: TYSQGTVFSTTP*LTSHNLTSHDI Trigger: TATATCATGACTGGTTAAATTATGACTAGTAAGCCACGGAGTAGTGCTGAAGACTGTTCCCTGGGAGTAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR CAA 72 bp | CTGGTGATGAAGCGCACATGGCCTACTGGGTGGGGCTaGACGGGTCATGCTGCAGGCTTATGCTTGCACCCA | + |
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Preference number: 4 (lower is better) Translates to: LVMKRTWPTGWG*TGHAAGLCLHP Trigger: TGGGTGCAAGCATAAGCCTGCAGCATGACCCGTCAAGCCCCACCCAGTAGGCCATGTGCGCTTCATCACCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS-3UTR CCA 90 bp | AGAGCAACTCCCAAAAGTTGTCTTCTGACTTTCACATGTGTGCTGGCAGGCATCCCTCGTGCGGCCACTTaGGCCTTCAGGATAGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: RATPKSCLLTFTCVLAGIPRAAT*AFRIAA Trigger: AGCTGCTATCCTGAAGGCCCAAGTGGCCGCACGAGG...GATGCCTGCCAGCACACATGTGAAAGTCAGAAGACAACTTTTGGGAGTTGCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR CAA 72 bp | GGCTCGGAGGTTCAGAGTACTGTTTGCTCTTCCGTCTaGAGTTCAATTCTCAGCAACCACATGGTGGCTCAC | + |
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Preference number: 4 (lower is better) Translates to: GSEVQSTVCSSV*SSILSNHMVAH Trigger: GTGAGCCACCATGTGGTTGCTGAGAATTGAACTCAAGACGGAAGAGCAAACAGTACTCTGAACCTCCGAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS-3UTR TCA 90 bp | GCACACCAAACTATAACCACCACCAAAGACTCCATTAGGCCAAGGCAACCACCATCCTCTGCCGGCCCCTaGGCCTTGGTTTTTATTTTT | + |
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Preference number: 4 (lower is better) Translates to: AHQTITTTKDSIRPRQPPSSAGP*ALVFIF Trigger: AAAAATAAAAACCAAGGCTCAGGGGCCGGCAGAGGA...TGGTGGTTGCCTTGGCCTAATGGAGTCTTTGGTGGTGGTTATAGTTTGGTGTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS-3UTR TCA 90 bp | AACATTTCACCACATAAACAGCTGGTGATGAAGCGCACATGGCCTACTGGGTGGTGTCCTCTGCTTCAATaGGCTTCCCTCGGTATACTT | + |
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Preference number: 4 (lower is better) Translates to: NISPHKQLVMKRTWPTGWCPLLQ*ASLGIL Trigger: AAGTATACCGAGGGAAGCTCATTGAAGCAGAGGACA...CCACCCAGTAGGCCATGTGCGCTTCATCACCAGCTGTTTATGTGGTGAAATGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS-3UTR TCA 90 bp | AAAGCCAAGATAAAAGTCAAGATACCAGCAGGTGGCCGCACACGGGACTTACTCGTGATGTTGGACATCTaGCAGTTCATGTTGTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: KAKIKVKIPAGGRTRDLLVMLDI*QFMLSS Trigger: AGAGGACAACATGAACTGTCAGATGTCCAACATCAC...GAGTAAGTCCCGTGTGCGGCCACCTGCTGGTATCTTGACTTTTATCTTGGCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS-3UTR GCA 90 bp | TACTCCCAGGGAACAGTCTTCAGCACTACTCCGTGGCTTACTAGTCATAATTTATACCTGTTCCAGCTGTaGCACTCGACCATCTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: YSQGTVFSTTPWLTSHNLYLFQL*HSTISV Trigger: TACAGAGATGGTCGAGTGGCACAGCTGGAACAGGTA...TAAATTATGACTAGTAAGCCACGGAGTAGTGCTGAAGACTGTTCCCTGGGAGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR CAA 72 bp | ATGCTTGCACCCAACCCTGAGACGACACATGTCAACTaGAATCAGCCCACTAAAGTTGGCATCACACTGAAT | + |
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Preference number: 4 (lower is better) Translates to: MLAPNPETTHVN*NQPTKVGITLN Trigger: ATTCAGTGTGATGCCAACTTTAGTGGGCTGATTCAAGTTGACATGTGTCGTCTCAGGGTTGGGTGCAAGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| 3UTR CAA 72 bp | GCGGGCAGAATTACTGTAAACCCTGACAACCTAAGTTaGATTCCAAAGAAGATGGGAGAGCAACTCCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: AGRITVNPDNLS*IPKKMGEQLPK Trigger: TTTTGGGAGTTGCTCTCCCATCTTCTTTGGAATCAAACTTAGGTTGTCAGGGTTTACAGTAATTCTGCCCGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS-3UTR CCA 90 bp | CCTGAGACGACACATGTCAACTTGAATCAGCCCACTAAAGTTGGCATCACACTGTCATGCTCTTTAACATaGGTGCATTTTTCAGCATGT | + |
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Preference number: 4 (lower is better) Translates to: PETTHVNLNQPTKVGITLSCSLT*VHFSAC Trigger: ACATGCTGAAAAATGCACCCATGTTAAAGAGCATGA...CAGTGTGATGCCAACTTTAGTGGGCTGATTCAAGTTGACATGTGTCGTCTCAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS CCA 90 bp | ATGTTCCCACGTCCCATCCCACGTCCTCTCCCTCGTGCGGCCACTTaGGCCTTCAGGATAGCAGCTTTTCCTCTGCCGGCCCCTGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: MFPRPIPRPLPRAAT*AFRIAAFPLPAPEP Trigger: AGGCTCAGGGGCCGGCAGAGGAAAAGCTGCTATCCTGAAGGCCCAAGTGGCCGCACGAGGGAGAGGACGTGGGATGGGACGTGGGAACAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS GCA 90 bp | CTTCTGGAAGATGTTCCCACGTCCCATCCCACGTCCTCTCCCTCGTaGGGCCACTTGGGCCTTCAGGATAGCAGCTTTTCCTCTGCCGGC | + |
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Preference number: 5 (lower is better) Translates to: LLEDVPTSHPTSSPS*GHLGLQDSSFSSAG Trigger: GCCGGCAGAGGAAAAGCTGCTATCCTGAAGGCCCAAGTGGCCGCACGAGGGAGAGGACGTGGGATGGGACGTGGGAACATCTTCCAGAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS GCA 90 bp | GTCCCATCCCACGTCCTCTCCCTCGTGCGGCCACTGTTCCAGCTGTaGCACTCGACCATCTCTGTATGTGACTGTGATGTTGGACATCTG | + |
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Preference number: 5 (lower is better) Translates to: VPSHVLSLVRPLFQL*HSTISVCDCDVGHL Trigger: CAGATGTCCAACATCACAGTCACATACAGAGATGGTCGAGTGGCACAGCTGGAACAGTGGCCGCACGAGGGAGAGGACGTGGGATGGGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220229.2 |
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| CDS CCA 90 bp | TTCCCTCGGTATACTTCCCCGGTGTTGGTCTCACACGTCACTATGTaGCCTTCAGCCTCGTGCAAGACTTTAATCGGCACACCAATAGAC | + |
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Preference number: 5 (lower is better) Translates to: FPRYTSPVLVSHVTM*PSASCKTLIGTPID Trigger: GTCTATTGGTGTGCCGATTAAAGTCTTGCACGAGGCTGAAGGCCACATAGTGACGTGTGAGACCAACACCGGGGAAGTATACCGAGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020397.11 ENSMUST00000220229.2 |
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| CDS GCA 90 bp | CAGAAATCGGATCTTGCTGCCACGTATATATACCTGTTCCAGCTGTaGCACTCGACCATCTCTGTATGTGACTGTGATGTTGGACATCTG | + |
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Preference number: 5 (lower is better) Translates to: QKSDLAATYIYLFQL*HSTISVCDCDVGHL Trigger: CAGATGTCCAACATCACAGTCACATACAGAGATGGTCGAGTGGCACAGCTGGAACAGGTATATATACGTGGCAGCAAGATCCGATTTCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS GCA 90 bp | GTGCATTTTTCAGCATGTCAGGCAAAATCAGAAATCGGATCTTGCTaGCACGTATATATACCTGTTCCAGCTGTGCCACTCGACCATCTC | + |
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Preference number: 5 (lower is better) Translates to: VHFSACQAKSEIGSC*HVYIPVPAVPLDHL Trigger: GAGATGGTCGAGTGGCACAGCTGGAACAGGTATATATACGTGGCAGCAAGATCCGATTTCTGATTTTGCCTGACATGCTGAAAAATGCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS GCA 90 bp | TGGGTGCATTTTTCAGCATGTCAGGCAAAATCAGAAATCGGATCTTaGTGCCACGTATATATACCTGTTCCAGCTGTGCCACTCGACCAT | + |
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Preference number: 5 (lower is better) Translates to: WVHFSACQAKSEIGS*CHVYIPVPAVPLDH Trigger: ATGGTCGAGTGGCACAGCTGGAACAGGTATATATACGTGGCAGCAAGATCCGATTTCTGATTTTGCCTGACATGCTGAAAAATGCACCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS CCA 72 bp | CGTCCCATCCCACGTCCTCTCCCTCGTGCGGCCACTTaGGCCTTCAGGATAGCAGCTTTTCCTCTGCCGGCC | + |
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Preference number: 6 (lower is better) Translates to: RPIPRPLPRAAT*AFRIAAFPLPA Trigger: GGCCGGCAGAGGAAAAGCTGCTATCCTGAAGGCCCAAGTGGCCGCACGAGGGAGAGGACGTGGGATGGGACG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS CAA 72 bp | ACGTCCCATCCCACGTCCTCTCCCTCGTGCGGCCACTaGGGCCTTCAGGATAGCAGCTTTTCCTCTGCCGGC | + |
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Preference number: 6 (lower is better) Translates to: TSHPTSSPSCGH*GLQDSSFSSAG Trigger: GCCGGCAGAGGAAAAGCTGCTATCCTGAAGGCCCAAGTGGCCGCACGAGGGAGAGGACGTGGGATGGGACGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS GCA 72 bp | GATGTTCCCACGTCCCATCCCACGTCCTCTCCCTCGTaGGGCCACTTGGGCCTTCAGGATAGCAGCTTTTCC | + |
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Preference number: 6 (lower is better) Translates to: DVPTSHPTSSPS*GHLGLQDSSFS Trigger: GGAAAAGCTGCTATCCTGAAGGCCCAAGTGGCCGCACGAGGGAGAGGACGTGGGATGGGACGTGGGAACATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS CAA 72 bp | GCTTCAATGAGCTTCCCTCGGTATACTTCCCCGGTGTaGGTCTCACACGTCACTATGTGGCCTTCAGCCTCG | + |
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Preference number: 6 (lower is better) Translates to: ASMSFPRYTSPV*VSHVTMWPSAS Trigger: CGAGGCTGAAGGCCACATAGTGACGTGTGAGACCAACACCGGGGAAGTATACCGAGGGAAGCTCATTGAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020397.11 ENSMUST00000220229.2 |
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| CDS CAA 90 bp | TTGTCCTCTGCTTCAATGAGCTTCCCTCGGTATACTTCCCCGGTGTaGGTCTCACACGTCACTATGTGGCCTTCAGCCTCGTGCAAGACT | + |
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Preference number: 6 (lower is better) Translates to: LSSASMSFPRYTSPV*VSHVTMWPSASCKT Trigger: AGTCTTGCACGAGGCTGAAGGCCACATAGTGACGTGTGAGACCAACACCGGGGAAGTATACCGAGGGAAGCTCATTGAAGCAGAGGACAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020397.11 ENSMUST00000220229.2 |
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| CDS CCA 72 bp | TATACTTCCCCGGTGTTGGTCTCACACGTCACTATGTaGCCTTCAGCCTCGTGCAAGACTTTAATCGGCACA | + |
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Preference number: 6 (lower is better) Translates to: YTSPVLVSHVTM*PSASCKTLIGT Trigger: TGTGCCGATTAAAGTCTTGCACGAGGCTGAAGGCCACATAGTGACGTGTGAGACCAACACCGGGGAAGTATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020397.11 ENSMUST00000220229.2 |
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| CDS TCA 72 bp | TGGACATCTGACAGTTCATGTTGTCCTCTGCTTCAATaGGCTTCCCTCGGTATACTTCCCCGGTGTTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: WTSDSSCCPLLQ*ASLGILPRCWS Trigger: AGACCAACACCGGGGAAGTATACCGAGGGAAGCTCATTGAAGCAGAGGACAACATGAACTGTCAGATGTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020397.11 ENSMUST00000220229.2 |
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| CDS CAA 90 bp | ATGGGTGCATTTTTCAGCATGTCAGGCAAAATCAGAAATCGGATCTaGCTGCCACGTATATATACCTGTTCCAGCTGTGCCACTCGACCA | + |
|
Preference number: 6 (lower is better) Translates to: MGAFFSMSGKIRNRI*LPRIYTCSSCATRP Trigger: TGGTCGAGTGGCACAGCTGGAACAGGTATATATACGTGGCAGCAAGATCCGATTTCTGATTTTGCCTGACATGCTGAAAAATGCACCCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS GCA 72 bp | TTTTCAGCATGTCAGGCAAAATCAGAAATCGGATCTTaGTGCCACGTATATATACCTGTTCCAGCTGTGCCA | + |
|
Preference number: 6 (lower is better) Translates to: FSACQAKSEIGS*CHVYIPVPAVP Trigger: TGGCACAGCTGGAACAGGTATATATACGTGGCAGCAAGATCCGATTTCTGATTTTGCCTGACATGCTGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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| CDS CAA 72 bp | TTTTTCAGCATGTCAGGCAAAATCAGAAATCGGATCTaGCTGCCACGTATATATACCTGTTCCAGCTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: FFSMSGKIRNRI*LPRIYTCSSCA Trigger: GGCACAGCTGGAACAGGTATATATACGTGGCAGCAAGATCCGATTTCTGATTTTGCCTGACATGCTGAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020397.11 |
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