Pregenerated sensors for SNRPD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040824Ensembl transcript IDs: ENSMUST00000049294.4
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTGGGTCCTCCACGAGCCTCTTAAATAGGCTTCCCTTTCCCACTTaGACATTGTCAGAGAATCCCTCTGTCCACAATACACAAAAGTCC | + |
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Preference number: 1 (lower is better) Translates to: PGSSTSLLNRLPFPT*TLSENPSVHNTQKS Trigger: GGACTTTTGTGTATTGTGGACAGAGGGATTCTCTGACAATGTGCAAGTGGGAAAGGGAAGCCTATTTAAGAGGCTCGTGGAGGACCCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR TCA 90 bp | GATAACGTTAGCTGTGACTTCCACAGTTCAGGAGGACAGCTAGGCTaGATGGTGGTAGCTCATACCTTTAATCCCAGGACTCATGAGGCA | + |
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Preference number: 1 (lower is better) Translates to: DNVSCDFHSSGGQLG*MVVAHTFNPRTHEA Trigger: TGCCTCATGAGTCCTGGGATTAAAGGTATGAGCTACCACCATTCAGCCTAGCTGTCCTCCTGAACTGTGGAAGTCACAGCTAACGTTATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR-3UTR GCA 90 bp | TTCTGGCAGCAGCTCAGGGAACACATGCAAGTTTTCTTGGCTGCAGGCTTCGAACACTGGGCAGGGTTCTaGAGGCCTTCGCAGGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: FWQQLREHMQVFLAAGFEHWAGF*RPSQGR Trigger: CCTGCCCTGCGAAGGCCTGCAGAACCCTGCCCAGTG...TTCGAAGCCTGCAGCCAAGAAAACTTGCATGTGTTCCCTGAGCTGCTGCCAGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR-3UTR GCA 90 bp | TCTTTCTGGCAGCAGCTCAGGGAACACATGCAAGTTTTCTTGGCTGCAGGCTTCCTTCCCTTTCCCACTTaGACATTGTCAGAGAATCCC | + |
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Preference number: 2 (lower is better) Translates to: SFWQQLREHMQVFLAAGFLPFPT*TLSENP Trigger: GGGATTCTCTGACAATGTGCAAGTGGGAAAGGGAAG...GAAGCCTGCAGCCAAGAAAACTTGCATGTGTTCCCTGAGCTGCTGCCAGAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR-3UTR CCA 90 bp | ATCCAGGCAAAACACCCATACATGTTTTATATACATGTAAAGAGGGCAGAGACTTTATTTCTCGCCCACTaGGCAGGGTTCTGCAGGCCT | + |
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Preference number: 2 (lower is better) Translates to: IQAKHPYMFYIHVKRAETLFLAH*AGFCRP Trigger: AGGCCTGCAGAACCCTGCCCAGTGGGCGAGAAATAA...AGTCTCTGCCCTCTTTACATGTATATAAAACATGTATGGGTGTTTTGCCTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR-3UTR GCA 90 bp | GCAAAACACCCATACATGTTTTATATACATGTAAAGAGGGCAGAGACTCCTGACTTAAACTGTCTCCTTTaGAGACAGGGCTGTTATATA | + |
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Preference number: 2 (lower is better) Translates to: AKHPYMFYIHVKRAETPDLNCLL*RQGCYI Trigger: TATATAACAGCCCTGTCTGCAAAGGAGACAGTTTAA...GTCAGGAGTCTCTGCCCTCTTTACATGTATATAAAACATGTATGGGTGTTTTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR GCA 72 bp | GCAGCAGCTCAGGGAACACATGCAAGTTTTCTTGGCTaGAGGCTTCGAAGTTCTGTACAGGGACGCACAGGA | + |
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Preference number: 3 (lower is better) Translates to: AAAQGTHASFLG*RLRSSVQGRTG Trigger: TCCTGTGCGTCCCTGTACAGAACTTCGAAGCCTGCAGCCAAGAAAACTTGCATGTGTTCCCTGAGCTGCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR CCA 72 bp | TCTGGCAGCAGCTCAGGGAACACATGCAAGTTTTCTTaGCTGCAGGCTTCGAAGTTCTGTACAGGGACGCAC | + |
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Preference number: 3 (lower is better) Translates to: SGSSSGNTCKFS*LQASKFCTGTH Trigger: GTGCGTCCCTGTACAGAACTTCGAAGCCTGCAGCCAAGAAAACTTGCATGTGTTCCCTGAGCTGCTGCCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR TCA 72 bp | CATGTTTTATATACATGTAAAGAGGGCAGAGACTCCTaGCCTCCAGCCCATGATCGCCTGGGAGGACACAGA | + |
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Preference number: 3 (lower is better) Translates to: HVLYTCKEGRDS*PPAHDRLGGHR Trigger: TCTGTGTCCTCCCAGGCGATCATGGGCTGGAGGTCAGGAGTCTCTGCCCTCTTTACATGTATATAAAACATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR GCA 72 bp | AAAGCTGTTCTTTCTGGCAGCAGCTCAGGGAACACATaGAAGTTTTCTTGGCTGCAGGCTTCGAAGTTCTGT | + |
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Preference number: 3 (lower is better) Translates to: KAVLSGSSSGNT*KFSWLQASKFC Trigger: ACAGAACTTCGAAGCCTGCAGCCAAGAAAACTTGCATGTGTTCCCTGAGCTGCTGCCAGAAAGAACAGCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR-3UTR CAA 90 bp | ACTCTCCTTTTCTGGCTCCTATGGGTACCAAGAACAGACACATCCAGGCAAAACTTTCCCACTTGCACATaGTCAGAGAATCCCTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: TLLFWLLWVPRTDTSRQNFPTCT*SENPSV Trigger: GACAGAGGGATTCTCTGACAATGTGCAAGTGGGAAA...GTTTTGCCTGGATGTGTCTGTTCTTGGTACCCATAGGAGCCAGAAAAGGAGAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR GCA 72 bp | CCACAATACACAAAAGTCCAATTAAACTGTCTCCTTTaGAGACAGGGCTGTTATATACCGCAGCACCCACAG | + |
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Preference number: 3 (lower is better) Translates to: PQYTKVQLNCLL*RQGCYIPQHPQ Trigger: CTGTGGGTGCTGCGGTATATAACAGCCCTGTCTGCAAAGGAGACAGTTTAATTGGACTTTTGTGTATTGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| CDS-3UTR TCA 90 bp | CATGTAAAGAGGGCAGAGACTCCTGACCTCCAGCCCATGATCGCCTGGGAGGACTCCGCAGCACCACGATaGCCGAGTCCCCGCGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: HVKRAETPDLQPMIAWEDSAAPR*PSPRAG Trigger: TCCTGCGCGGGGACTCGGTCATCGTGGTGCTGCGGA...GTCCTCCCAGGCGATCATGGGCTGGAGGTCAGGAGTCTCTGCCCTCTTTACATG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| CDS-3UTR CCA 90 bp | TTCTGGCAGCAGCTCAGGGAACACATGCAAGTTTTCTTGGCTGCAGGCTTCGAACTTGCCAGCGATGAGTaGGTTCCGCAGCACCACGAT | + |
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Preference number: 4 (lower is better) Translates to: FWQQLREHMQVFLAAGFELASDE*VPQHHD Trigger: ATCGTGGTGCTGCGGAACCCACTCATCGCTGGCAAG...TTCGAAGCCTGCAGCCAAGAAAACTTGCATGTGTTCCCTGAGCTGCTGCCAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR CAA 72 bp | TTCTGGCAGCAGCTCAGGGAACACATGCAAGTTTTCTaGGCTGCAGGCTTCGAAGTTCTGTACAGGGACGCA | + |
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Preference number: 4 (lower is better) Translates to: FWQQLREHMQVF*AAGFEVLYRDA Trigger: TGCGTCCCTGTACAGAACTTCGAAGCCTGCAGCCAAGAAAACTTGCATGTGTTCCCTGAGCTGCTGCCAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| CDS-3UTR TCA 90 bp | ACTCTCCTTTTCTGGCTCCTATGGGTACCAAGAACAGACACATCCAGGCAAAACCGACTGCGTGAGCACTaGGAGGGGACCTGTGTTGAA | + |
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Preference number: 4 (lower is better) Translates to: TLLFWLLWVPRTDTSRQNRLREH*EGTCVE Trigger: TTCAACACAGGTCCCCTCTCAGTGCTCACGCAGTCG...GTTTTGCCTGGATGTGTCTGTTCTTGGTACCCATAGGAGCCAGAAAAGGAGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| CDS-3UTR GCA 90 bp | AATAGGCTTCCCTTTCCCACTTGCACATTGTCAGAGAATCCCTCTGTCCACAATTTTCCAGCACCATGTTaGAGTGCCTGTCAAAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: NRLPFPTCTLSENPSVHNFPAPC*SACQRP Trigger: AGGCCTTTGACAGGCACTGCAACATGGTGCTGGAAA...ATTGTGGACAGAGGGATTCTCTGACAATGTGCAAGTGGGAAAGGGAAGCCTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| CDS-3UTR GCA 90 bp | TACACAAAAGTCCAATTAAACTGTCTCCTTTGCAGACAGGGCTGTTATATACCGAGCACCATGTTGCAGTaGCTGTCAAAGGCCTTCACC | + |
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Preference number: 4 (lower is better) Translates to: YTKVQLNCLLCRQGCYIPSTMLQ*LSKAFT Trigger: GGTGAAGGCCTTTGACAGGCACTGCAACATGGTGCT...CGGTATATAACAGCCCTGTCTGCAAAGGAGACAGTTTAATTGGACTTTTGTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR CAA 72 bp | TCCACAATACACAAAAGTCCAATTAAACTGTCTCCTTaGCAGACAGGGCTGTTATATACCGCAGCACCCACA | + |
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Preference number: 4 (lower is better) Translates to: STIHKSPIKLSP*QTGLLYTAAPT Trigger: TGTGGGTGCTGCGGTATATAACAGCCCTGTCTGCAAAGGAGACAGTTTAATTGGACTTTTGTGTATTGTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| 3UTR CAA 72 bp | AGCCTCTTAAATAGGCTTCCCTTTCCCACTTGCACATaGTCAGAGAATCCCTCTGTCCACAATACACAAAAG | + |
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Preference number: 4 (lower is better) Translates to: SLLNRLPFPTCT*SENPSVHNTQK Trigger: CTTTTGTGTATTGTGGACAGAGGGATTCTCTGACAATGTGCAAGTGGGAAAGGGAAGCCTATTTAAGAGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| CDS-3UTR CAA 90 bp | GCAGACAGGGCTGTTATATACCGCAGCACCCACAGGCCCTGTCCTAGTGCTCAGCCCAGCAGCTTCTTGTaGTTGCGACAGTTAATGAGC | + |
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Preference number: 5 (lower is better) Translates to: ADRAVIYRSTHRPCPSAQPSSFL*LRQLMS Trigger: GCTCATTAACTGTCGCAACAACAAGAAGCTGCTGGG...CTGAGCACTAGGACAGGGCCTGTGGGTGCTGCGGTATATAACAGCCCTGTCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| CDS-3UTR CAA 90 bp | GCAAAACACCCATACATGTTTTATATACATGTAAAGAGGGCAGAGACTCCTGACACTTGCGTGTTGTTCTaGACCGACTGCGTGAGCACT | + |
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Preference number: 5 (lower is better) Translates to: AKHPYMFYIHVKRAETPDTCVLF*TDCVST Trigger: AGTGCTCACGCAGTCGGTCAAGAACAACACGCAAGT...GTCAGGAGTCTCTGCCCTCTTTACATGTATATAAAACATGTATGGGTGTTTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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| CDS-3UTR CAA 90 bp | CAAGAACAGACACATCCAGGCAAAACACCCATACATGTTTTATATACATGTAAACGGCCCAGCAGCTTCTaGTTGTTGCGACAGTTAATG | + |
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Preference number: 5 (lower is better) Translates to: QEQTHPGKTPIHVLYTCKRPSSF*LLRQLM Trigger: CATTAACTGTCGCAACAACAAGAAGCTGCTGGGCCG...TTTACATGTATATAAAACATGTATGGGTGTTTTGCCTGGATGTGTCTGTTCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049294.4 |
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