Pregenerated sensors for SNRPD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002477Ensembl transcript IDs: ENSMUST00000002551.5, ENSMUST00000235020.2
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | CCCATGTTCAGTACATATGTATTTCATGCGTCCAACTCCCCGAACTaGACACACTATGTGAATATAGTAGATACTCACTACAACTTTAAT | + |
Preference number: 1 (lower is better) Translates to: PMFSTYVFHASNSPN*THYVNIVDTHYNFN Trigger: ATTAAAGTTGTAGTGAGTATCTACTATATTCACATAGTGTGTTCAGTTCGGGGAGTTGGACGCATGAAATACATATGTACTGAACATGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002551.5 |
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3UTR GCA 90 bp | GTCCTAGTTTCTACATCTCAAGCAATTAACACATGTCCTGAACAGTaGAAAAATTTAGTAAAAATTAGCTGGAGAGAGGGCTCAGTGTTA | + |
Preference number: 1 (lower is better) Translates to: VLVSTSQAINTCPEQ*KNLVKISWREGSVL Trigger: TAACACTGAGCCCTCTCTCCAGCTAATTTTTACTAAATTTTTGCACTGTTCAGGACATGTGTTAATTGCTTGAGATGTAGAAACTAGGAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000235020.2 |
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3UTR GCA 72 bp | AGAAATCAAACCCATGTTCAGTACATATGTATTTCATaGGTCCAACTCCCCGAACTGAACACACTATGTGAA | + |
Preference number: 3 (lower is better) Translates to: RNQTHVQYICIS*VQLPELNTLCE Trigger: TTCACATAGTGTGTTCAGTTCGGGGAGTTGGACGCATGAAATACATATGTACTGAACATGGGTTTGATTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002551.5 |
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3UTR TCA 72 bp | AGTACATATGTATTTCATGCGTCCAACTCCCCGAACTaGACACACTATGTGAATATAGTAGATACTCACTAC | + |
Preference number: 3 (lower is better) Translates to: STYVFHASNSPN*THYVNIVDTHY Trigger: GTAGTGAGTATCTACTATATTCACATAGTGTGTTCAGTTCGGGGAGTTGGACGCATGAAATACATATGTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002551.5 |
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CDS-3UTR TCA 90 bp | CTGGAGAGAGGGCTCAGTGTTAAGAGCACGTGTTGCTCTCGCAGAGGACCTGGGCTCTTCTGGCCTCTGTaGTTGTTCCATGGACTTGTG | + |
Preference number: 4 (lower is better) Translates to: LERGLSVKSTCCSRRGPGLFWPL*LFHGLV Trigger: CACAAGTCCATGGAACAATCACAGAGGCCAGAAGAG...CCCAGGTCCTCTGCGAGAGCAACACGTGCTCTTAACACTGAGCCCTCTCTCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235020.2 |
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CDS-3UTR GCA 90 bp | CAACTCCCCGAACTGAACACACTATGTGAATATAGTAGATACTCACTACAACTTGCCTCGGCCTCTTCCTaGAACAGCTTCTCTTTTCTT | + |
Preference number: 4 (lower is better) Translates to: QLPELNTLCEYSRYSLQLASASS*NSFSFL Trigger: AAGAAAAGAGAAGCTGTTGCAGGAAGAGGCCGAGGC...AAGTTGTAGTGAGTATCTACTATATTCACATAGTGTGTTCAGTTCGGGGAGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002551.5 |