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Pregenerated sensors for SNRPD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002477

Ensembl transcript IDs: ENSMUST00000002551.5, ENSMUST00000235020.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCCATGTTCAGTACATATGTATTTCATGCGTCCAACTCCCCGAACTaGACACACTATGTGAATATAGTAGATACTCACTACAACTTTAAT +
Preference number: 1 (lower is better)
Translates to: PMFSTYVFHASNSPN*THYVNIVDTHYNFN
Trigger: ATTAAAGTTGTAGTGAGTATCTACTATATTCACATAGTGTGTTCAGTTCGGGGAGTTGGACGCATGAAATACATATGTACTGAACATGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002551.5
3UTR GCA 90 bp GTCCTAGTTTCTACATCTCAAGCAATTAACACATGTCCTGAACAGTaGAAAAATTTAGTAAAAATTAGCTGGAGAGAGGGCTCAGTGTTA +
Preference number: 1 (lower is better)
Translates to: VLVSTSQAINTCPEQ*KNLVKISWREGSVL
Trigger: TAACACTGAGCCCTCTCTCCAGCTAATTTTTACTAAATTTTTGCACTGTTCAGGACATGTGTTAATTGCTTGAGATGTAGAAACTAGGAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000235020.2
3UTR GCA 72 bp AGAAATCAAACCCATGTTCAGTACATATGTATTTCATaGGTCCAACTCCCCGAACTGAACACACTATGTGAA +
Preference number: 3 (lower is better)
Translates to: RNQTHVQYICIS*VQLPELNTLCE
Trigger: TTCACATAGTGTGTTCAGTTCGGGGAGTTGGACGCATGAAATACATATGTACTGAACATGGGTTTGATTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002551.5
3UTR TCA 72 bp AGTACATATGTATTTCATGCGTCCAACTCCCCGAACTaGACACACTATGTGAATATAGTAGATACTCACTAC +
Preference number: 3 (lower is better)
Translates to: STYVFHASNSPN*THYVNIVDTHY
Trigger: GTAGTGAGTATCTACTATATTCACATAGTGTGTTCAGTTCGGGGAGTTGGACGCATGAAATACATATGTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002551.5
CDS-3UTR TCA 90 bp CTGGAGAGAGGGCTCAGTGTTAAGAGCACGTGTTGCTCTCGCAGAGGACCTGGGCTCTTCTGGCCTCTGTaGTTGTTCCATGGACTTGTG +
Preference number: 4 (lower is better)
Translates to: LERGLSVKSTCCSRRGPGLFWPL*LFHGLV
Trigger: CACAAGTCCATGGAACAATCACAGAGGCCAGAAGAG...CCCAGGTCCTCTGCGAGAGCAACACGTGCTCTTAACACTGAGCCCTCTCTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235020.2
CDS-3UTR GCA 90 bp CAACTCCCCGAACTGAACACACTATGTGAATATAGTAGATACTCACTACAACTTGCCTCGGCCTCTTCCTaGAACAGCTTCTCTTTTCTT +
Preference number: 4 (lower is better)
Translates to: QLPELNTLCEYSRYSLQLASASS*NSFSFL
Trigger: AAGAAAAGAGAAGCTGTTGCAGGAAGAGGCCGAGGC...AAGTTGTAGTGAGTATCTACTATATTCACATAGTGTGTTCAGTTCGGGGAGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002551.5