Pregenerated sensors for SNRPC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024217Ensembl transcript IDs: ENSMUST00000071006.9, ENSMUST00000232873.2, ENSMUST00000233657.2, ENSMUST00000233752.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ATTTCTCCCTCCAAAAATATTCAGTTAGGAAGGGAAGTTTCCTTTCCATGCATCAGCACCAAGAGCTCCTaGTGGAACAGAACAAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: ISPSKNIQLGREVSFPCISTKSS*WNRTRN Trigger: ATTTCTTGTTCTGTTCCACCAGGAGCTCTTGGTGCT...GATGCATGGAAAGGAAACTTCCCTTCCTAACTGAATATTTTTGGAGGGAGAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR CCA 90 bp | GAAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACCAAGAGGGGAGGTGGGATCATaGCCCCTGCAGGCGGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: EGKFPFHASSKHSGSAPRGEVGS*PLQAEE Trigger: CTCCTCCGCCTGCAGGGGCCATGATCCCACCTCCCC...TCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR CCA 90 bp | GTTAGGAAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACGGGGAGGTGGGATCATaGCCCCTGCAGGCGGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: VRKGSFLSMHLVNTRAQHGEVGS*PLQAEE Trigger: CTCCTCCGCCTGCAGGGGCCATGATCCCACCTCCCC...GTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTTCCTAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR GCA 90 bp | ATGCATCTAGTAAACACTCGGGCTCAGCACCAAGAGCTCCTGGTGGAACAGAACTGGGATCATGGCCCCTaGAGGCGGAGGAGCAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: MHLVNTRAQHQELLVEQNWDHGP*RRRSRE Trigger: TTCTCTGCTCCTCCGCCTGCAGGGGCCATGATCCCA...GTTCTGTTCCACCAGGAGCTCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR CCA 90 bp | ATGCATCTAGTAAACACTCGGGCTCAGCACCAAGAGCTCCTGGTGGAACAGAACTCTCATCCCAGGAGCTaGTCCCACGGGCATCATTCC | + |
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Preference number: 4 (lower is better) Translates to: MHLVNTRAQHQELLVEQNSHPRS*SHGHHS Trigger: GGAATGATGCCCGTGGGACCAGCTCCTGGGATGAGA...GTTCTGTTCCACCAGGAGCTCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR GCA 90 bp | GAAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACCAAGATGGGATCATGGCCCCTaGAGGCGGAGGAGCAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: EGKFPFHASSKHSGSAPRWDHGP*RRRSRE Trigger: TTCTCTGCTCCTCCGCCTGCAGGGGCCATGATCCCA...TCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR CCA 90 bp | AAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACCAAGAGTCTCATCCCAGGAGCTaGTCCCACGGGCATCATTCC | + |
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Preference number: 4 (lower is better) Translates to: KGSFLSMHLVNTRAQHQESHPRS*SHGHHS Trigger: GGAATGATGCCCGTGGGACCAGCTCCTGGGATGAGA...CTCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR CCA 90 bp | GAAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACCAAGATCTCATCCCAGGAGCTaGTCCCACGGGCATCATTCC | + |
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Preference number: 4 (lower is better) Translates to: EGKFPFHASSKHSGSAPRSHPRS*SHGHHS Trigger: GGAATGATGCCCGTGGGACCAGCTCCTGGGATGAGA...TCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR TCA 90 bp | ATGCATCTAGTAAACACTCGGGCTCAGCACCAAGAGCTCCTGGTGGAACAGAACGGGATCTTCCCTTGTTaGAATGCAGCCGTTGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: MHLVNTRAQHQELLVEQNGIFPC*NAAVVL Trigger: CAAGACAACGGCTGCATTTCAACAAGGGAAGATCCC...GTTCTGTTCCACCAGGAGCTCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR GCA 90 bp | AAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACCAAGAGCAGATGGCTGGAATTTaGCATCTTCCTGGCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: KGSFLSMHLVNTRAQHQEQMAGI*HLPGSA Trigger: GGCTGAGCCAGGAAGATGGCAAATTCCAGCCATCTG...CTCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233752.2 |
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| CDS-3UTR CCA 90 bp | ATGCATCTAGTAAACACTCGGGCTCAGCACCAAGAGCTCCTGGTGGAACAGAACTTCCTCACAGATGGCTaGAATTTGCCATCTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: MHLVNTRAQHQELLVEQNFLTDG*NLPSSW Trigger: CCAGGAAGATGGCAAATTCCAGCCATCTGTGAGGAA...GTTCTGTTCCACCAGGAGCTCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233752.2 |
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| CDS-3UTR TCA 90 bp | AAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACCAAGAGGGGATCTTCCCTTGTTaGAATGCAGCCGTTGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: KGSFLSMHLVNTRAQHQEGIFPC*NAAVVL Trigger: CAAGACAACGGCTGCATTTCAACAAGGGAAGATCCC...CTCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR TCA 90 bp | GTTAGGAAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACGGGATCTTCCCTTGTTaGAATGCAGCCGTTGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: VRKGSFLSMHLVNTRAQHGIFPC*NAAVVL Trigger: CAAGACAACGGCTGCATTTCAACAAGGGAAGATCCC...GTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTTCCTAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR GCA 90 bp | ATTTCTCCCTCCAAAAATATTCAGTTAGGAAGGGAAGTTTCCTTTCCATGCATCTGGGATCATGGCCCCTaGAGGCGGAGGAGCAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: ISPSKNIQLGREVSFPCIWDHGP*RRRSRE Trigger: TTCTCTGCTCCTCCGCCTGCAGGGGCCATGATCCCA...GATGCATGGAAAGGAAACTTCCCTTCCTAACTGAATATTTTTGGAGGGAGAAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR CCA 90 bp | ATTTCTCCCTCCAAAAATATTCAGTTAGGAAGGGAAGTTTCCTTTCCATGCATCTCTCATCCCAGGAGCTaGTCCCACGGGCATCATTCC | + |
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Preference number: 4 (lower is better) Translates to: ISPSKNIQLGREVSFPCISHPRS*SHGHHS Trigger: GGAATGATGCCCGTGGGACCAGCTCCTGGGATGAGA...GATGCATGGAAAGGAAACTTCCCTTCCTAACTGAATATTTTTGGAGGGAGAAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR CCA 90 bp | GAAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACCAAGATGTCTTCCTCACAGATaGCTGGAATTTGCCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: EGKFPFHASSKHSGSAPRCLPHR*LEFAIF Trigger: GAAGATGGCAAATTCCAGCCATCTGTGAGGAAGACA...TCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233752.2 |
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| CDS-3UTR CCA 90 bp | AAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACCAAGAGTGTCTTCCTCACAGATaGAGAATCGTGGGTAAGATA | + |
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Preference number: 4 (lower is better) Translates to: KGSFLSMHLVNTRAQHQECLPHR*RIVGKI Trigger: TATCTTACCCACGATTCTCCATCTGTGAGGAAGACA...CTCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 |
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| CDS-3UTR CCA 90 bp | GAAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACCAAGATGTCTTCCTCACAGATaGAGAATCGTGGGTAAGATA | + |
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Preference number: 4 (lower is better) Translates to: EGKFPFHASSKHSGSAPRCLPHR*RIVGKI Trigger: TATCTTACCCACGATTCTCCATCTGTGAGGAAGACA...TCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 |
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| CDS-3UTR CCA 90 bp | GTTAGGAAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACTGTCTTCCTCACAGATaGAGAATCGTGGGTAAGATA | + |
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Preference number: 4 (lower is better) Translates to: VRKGSFLSMHLVNTRAQHCLPHR*RIVGKI Trigger: TATCTTACCCACGATTCTCCATCTGTGAGGAAGACA...GTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTTCCTAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 |
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| CDS-3UTR CAA 90 bp | ATGCATCTAGTAAACACTCGGGCTCAGCACCAAGAGCTCCTGGTGGAACAGAACAGGGATCTTCCCTTGTaGAAATGCAGCCGTTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: MHLVNTRAQHQELLVEQNRDLPL*KCSRCL Trigger: AAGACAACGGCTGCATTTCAACAAGGGAAGATCCCT...GTTCTGTTCCACCAGGAGCTCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR CAA 90 bp | GTTAGGAAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACAGGGATCTTCCCTTGTaGAAATGCAGCCGTTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: VRKGSFLSMHLVNTRAQHRDLPL*KCSRCL Trigger: AAGACAACGGCTGCATTTCAACAAGGGAAGATCCCT...GTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTTCCTAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR CAA 90 bp | AAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACCAAGAGAGGGATCTTCCCTTGTaGAAATGCAGCCGTTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: KGSFLSMHLVNTRAQHQERDLPL*KCSRCL Trigger: AAGACAACGGCTGCATTTCAACAAGGGAAGATCCCT...CTCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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| CDS-3UTR CAA 90 bp | GAAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTCAGCACCAAGAAGGGATCTTCCCTTGTaGAAATGCAGCCGTTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: EGKFPFHASSKHSGSAPRRDLPL*KCSRCL Trigger: AAGACAACGGCTGCATTTCAACAAGGGAAGATCCCT...TCTTGGTGCTGAGCCCGAGTGTTTACTAGATGCATGGAAAGGAAACTTCCCTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000071006.9 ENSMUST00000232873.2 ENSMUST00000233657.2 ENSMUST00000233752.2 |
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