Pregenerated sensors for SNRPB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000008333Ensembl transcript IDs: ENSMUST00000008477.13
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGTCTTGAACTTGCAGTAATCCTCCTGCCTCTGCCCCCACAATGCTaGAATTATACGCAGGCAGTACCAAGCCTGAGACCCTTCCTTGAG | + |
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Preference number: 1 (lower is better) Translates to: GLELAVILLPLPPQC*NYTQAVPSLRPFLE Trigger: CTCAAGGAAGGGTCTCAGGCTTGGTACTGCCTGCGTATAATTCCAGCATTGTGGGGGCAGAGGCAGGAGGATTACTGCAAGTTCAAGACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR GCA 90 bp | ACTGGTCTTGAACTTGCAGTAATCCTCCTGCCTCTGCCCCCACAATaGTGGAATTATACGCAGGCAGTACCAAGCCTGAGACCCTTCCTT | + |
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Preference number: 1 (lower is better) Translates to: TGLELAVILLPLPPQ*WNYTQAVPSLRPFL Trigger: AAGGAAGGGTCTCAGGCTTGGTACTGCCTGCGTATAATTCCAGCATTGTGGGGGCAGAGGCAGGAGGATTACTGCAAGTTCAAGACCAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR CCA 90 bp | CCATCTAACCTGGTCACACAGTGTCACAAAGGAAGATTAGTAACCTaGGTACCCCACAGCATCACAAAGGAGACCGAGATTACAGAATCT | + |
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Preference number: 1 (lower is better) Translates to: PSNLVTQCHKGRLVT*VPHSITKETEITES Trigger: AGATTCTGTAATCTCGGTCTCCTTTGTGATGCTGTGGGGTACCCAGGTTACTAATCTTCCTTTGTGACACTGTGTGACCAGGTTAGATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR TCA 90 bp | GACTACATTTGCAAAATCTTGTCTCTAAACAATGGACAGGGGACATaGAGCTCAGTGGTAATGTCAGCTGCACGCCTACCATCTAACCTG | + |
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Preference number: 1 (lower is better) Translates to: DYICKILSLNNGQGT*SSVVMSAARLPSNL Trigger: CAGGTTAGATGGTAGGCGTGCAGCTGACATTACCACTGAGCTTCATGTCCCCTGTCCATTGTTTAGAGACAAGATTTTGCAAATGTAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR GCA 90 bp | TCACAGCAGGGCGATCATTTTACTATTAACATGCTGCTCACTGGTTaGTGCAATCTGCTCCCTTCAACTTCTGTATCATTAGCTGCTCCA | + |
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Preference number: 1 (lower is better) Translates to: SQQGDHFTINMLLTG*CNLLPSTSVSLAAP Trigger: TGGAGCAGCTAATGATACAGAAGTTGAAGGGAGCAGATTGCAGCAACCAGTGAGCAGCATGTTAATAGTAAAATGATCGCCCTGCTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR GCA 90 bp | TGTCTTGTTACTCACAGCAGGGCGATCATTTTACTATTAACATGCTaGTCACTGGTTGCTGCAATCTGCTCCCTTCAACTTCTGTATCAT | + |
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Preference number: 1 (lower is better) Translates to: CLVTHSRAIILLLTC*SLVAAICSLQLLYH Trigger: ATGATACAGAAGTTGAAGGGAGCAGATTGCAGCAACCAGTGAGCAGCATGTTAATAGTAAAATGATCGCCCTGCTGTGAGTAACAAGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR GCA 90 bp | AAATGTCTTGTTACTCACAGCAGGGCGATCATTTTACTATTAACATaGTGCTCACTGGTTGCTGCAATCTGCTCCCTTCAACTTCTGTAT | + |
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Preference number: 1 (lower is better) Translates to: KCLVTHSRAIILLLT*CSLVAAICSLQLLY Trigger: ATACAGAAGTTGAAGGGAGCAGATTGCAGCAACCAGTGAGCAGCATGTTAATAGTAAAATGATCGCCCTGCTGTGAGTAACAAGACATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR-3UTR GCA 90 bp | ACTGGTCTTGAACTTGCAGTAATCCTCCTGCCTCTGCCCCCACAATGCTGGAATCATCCAGCAAAGCACTaGACTTTGGACAGAAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: TGLELAVILLPLPPQCWNHPAKH*TLDRSK Trigger: TTTGCTTCTGTCCAAAGTGCAGTGCTTTGCTGGATG...ATTCCAGCATTGTGGGGGCAGAGGCAGGAGGATTACTGCAAGTTCAAGACCAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR-3UTR GCA 90 bp | GCAGCTGCTATCACATGGCCACTAATACTGTGCAATCCCTACTCCATCCAGCAACTGGTTGCTGCAATCTaGTCCCTTCAACTTCTGTAT | + |
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Preference number: 2 (lower is better) Translates to: AAAITWPLILCNPYSIQQLVAAI*SLQLLY Trigger: ATACAGAAGTTGAAGGGAGCAGATTGCAGCAACCAG...TTGCTGGATGGAGTAGGGATTGCACAGTATTAGTGGCCATGTGATAGCAGCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR-3UTR GCA 90 bp | CCATCTAACCTGGTCACACAGTGTCACAAAGGAAGATTAGTAACCTGGGTACCCTTACTATTAACATGCTaGTCACTGGTTGCTGCAATC | + |
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Preference number: 2 (lower is better) Translates to: PSNLVTQCHKGRLVTWVPLLLTC*SLVAAI Trigger: GATTGCAGCAACCAGTGAGCAGCATGTTAATAGTAA...GGGTACCCAGGTTACTAATCTTCCTTTGTGACACTGTGTGACCAGGTTAGATGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR-3UTR GCA 90 bp | GCAGCTGCTATCACATGGCCACTAATACTGTGCAATCCCTACTCCATCCAGCAAATTTTACTATTAACATaGTGCTCACTGGTTGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: AAAITWPLILCNPYSIQQILLLT*CSLVAA Trigger: TGCAGCAACCAGTGAGCAGCATGTTAATAGTAAAAT...TTGCTGGATGGAGTAGGGATTGCACAGTATTAGTGGCCATGTGATAGCAGCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR-3UTR GCA 90 bp | CCATCTAACCTGGTCACACAGTGTCACAAAGGAAGATTAGTAACCTGGGTACCCAAGCAAATGTCACATTaGAGGCAGCAATTTTATTTC | + |
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Preference number: 2 (lower is better) Translates to: PSNLVTQCHKGRLVTWVPKQMSH*RQQFYF Trigger: GAAATAAAATTGCTGCCTGCAATGTGACATTTGCTT...GGGTACCCAGGTTACTAATCTTCCTTTGTGACACTGTGTGACCAGGTTAGATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR GCA 72 bp | GAACTTGCAGTAATCCTCCTGCCTCTGCCCCCACAATaGTGGAATTATACGCAGGCAGTACCAAGCCTGAGA | + |
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Preference number: 3 (lower is better) Translates to: ELAVILLPLPPQ*WNYTQAVPSLR Trigger: TCTCAGGCTTGGTACTGCCTGCGTATAATTCCAGCATTGTGGGGGCAGAGGCAGGAGGATTACTGCAAGTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR-3UTR CAA 90 bp | CTGCCTCTGCCCCCACAATGCTGGAATTATACGCAGGCAGTACCAAGCCTGAGAACAGAAGCAAATGTCTaGTTACTCACAGCAGGGCGA | + |
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Preference number: 3 (lower is better) Translates to: LPLPPQCWNYTQAVPSLRTEANV*LLTAGR Trigger: TCGCCCTGCTGTGAGTAACAAGACATTTGCTTCTGT...TCTCAGGCTTGGTACTGCCTGCGTATAATTCCAGCATTGTGGGGGCAGAGGCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR-3UTR CAA 90 bp | ACTGGTCTTGAACTTGCAGTAATCCTCCTGCCTCTGCCCCCACAATGCTGGAATGCAAAGCACTGCACTTaGGACAGAAGCAAATGTCTT | + |
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Preference number: 3 (lower is better) Translates to: TGLELAVILLPLPPQCWNAKHCT*DRSKCL Trigger: AAGACATTTGCTTCTGTCCAAAGTGCAGTGCTTTGC...ATTCCAGCATTGTGGGGGCAGAGGCAGGAGGATTACTGCAAGTTCAAGACCAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR CCA 72 bp | TGCAATCCCTACTCCATCCAGCAAAGCACTGCACTTTaGACAGAAGCAAATGTCTTGTTACTCACAGCAGGG | + |
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Preference number: 3 (lower is better) Translates to: CNPYSIQQSTAL*TEANVLLLTAG Trigger: CCCTGCTGTGAGTAACAAGACATTTGCTTCTGTCCAAAGTGCAGTGCTTTGCTGGATGGAGTAGGGATTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR CCA 72 bp | CTGGTCACACAGTGTCACAAAGGAAGATTAGTAACCTaGGTACCCCACAGCATCACAAAGGAGACCGAGATT | + |
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Preference number: 3 (lower is better) Translates to: LVTQCHKGRLVT*VPHSITKETEI Trigger: AATCTCGGTCTCCTTTGTGATGCTGTGGGGTACCCAGGTTACTAATCTTCCTTTGTGACACTGTGTGACCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR GCA 72 bp | ACTCACAGCAGGGCGATCATTTTACTATTAACATGCTaGTCACTGGTTGCTGCAATCTGCTCCCTTCAACTT | + |
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Preference number: 3 (lower is better) Translates to: THSRAIILLLTC*SLVAAICSLQL Trigger: AAGTTGAAGGGAGCAGATTGCAGCAACCAGTGAGCAGCATGTTAATAGTAAAATGATCGCCCTGCTGTGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR GCA 72 bp | GTTACTCACAGCAGGGCGATCATTTTACTATTAACATaGTGCTCACTGGTTGCTGCAATCTGCTCCCTTCAA | + |
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Preference number: 3 (lower is better) Translates to: VTHSRAIILLLT*CSLVAAICSLQ Trigger: TTGAAGGGAGCAGATTGCAGCAACCAGTGAGCAGCATGTTAATAGTAAAATGATCGCCCTGCTGTGAGTAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| 3UTR GCA 72 bp | GGCGATCATTTTACTATTAACATGCTGCTCACTGGTTaGTGCAATCTGCTCCCTTCAACTTCTGTATCATTA | + |
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Preference number: 3 (lower is better) Translates to: GDHFTINMLLTG*CNLLPSTSVSL Trigger: TAATGATACAGAAGTTGAAGGGAGCAGATTGCAGCAACCAGTGAGCAGCATGTTAATAGTAAAATGATCGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR GCA 90 bp | CTGCCTCTGCCCCCACAATGCTGGAATTATACGCAGGCAGTACCAAGCCTGAGACTTGTTTGCAGCAGCTaGAGCCTGTTCCATGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: LPLPPQCWNYTQAVPSLRLVCSS*SLFHGF Trigger: AAAACCATGGAACAGGCTGCAGCTGCTGCAAACAAG...TCTCAGGCTTGGTACTGCCTGCGTATAATTCCAGCATTGTGGGGGCAGAGGCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR GCA 90 bp | CCTCTGCCCCCACAATGCTGGAATTATACGCAGGCAGTACCAAGCCTGAGACCCCTCAAATTCTACAAATaGAATGTCATGTCTCCCCGG | + |
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Preference number: 4 (lower is better) Translates to: PLPPQCWNYTQAVPSLRPLKFYK*NVMSPR Trigger: CCGGGGAGACATGACATTGCATTTGTAGAATTTGAG...GGGTCTCAGGCTTGGTACTGCCTGCGTATAATTCCAGCATTGTGGGGGCAGAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR CCA 90 bp | CTGCCTCTGCCCCCACAATGCTGGAATTATACGCAGGCAGTACCAAGCCTGAGATTGAATCCAGGGAACTaGTTGAACAGCATGGATAAC | + |
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Preference number: 4 (lower is better) Translates to: LPLPPQCWNYTQAVPSLRLNPGN*LNSMDN Trigger: GTTATCCATGCTGTTCAACCAGTTCCCTGGATTCAA...TCTCAGGCTTGGTACTGCCTGCGTATAATTCCAGCATTGTGGGGGCAGAGGCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR CCA 90 bp | TTTGGACAGAAGCAAATGTCTTGTTACTCACAGCAGGGCGATCATTTTACTATTAGGGACCTGAGGATTTaGCGCTGCAGTGCCTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: FGQKQMSCYSQQGDHFTIRDLRI*RCSALG Trigger: ACCCAAGGCACTGCAGCGCCAAATCCTCAGGTCCCT...AATAGTAAAATGATCGCCCTGCTGTGAGTAACAAGACATTTGCTTCTGTCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR GCA 90 bp | TTTGGGGCTAGCCTAGACTACATTTGCAAAATCTTGTCTCTAAACAATGGACAGACCAGGCTTCTTGTTTaGAGCAGCTGCAGCCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: FGASLDYICKILSLNNGQTRLLV*SSCSLF Trigger: GAACAGGCTGCAGCTGCTGCAAACAAGAAGCCTGGT...CTGTCCATTGTTTAGAGACAAGATTTTGCAAATGTAGTCTAGGCTAGCCCCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR GCA 90 bp | TTTGGACAGAAGCAAATGTCTTGTTACTCACAGCAGGGCGATCATTTTACTATTCTGAGGATTTGGCGCTaGAGTGCCTTGGGTATTAGC | + |
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Preference number: 4 (lower is better) Translates to: FGQKQMSCYSQQGDHFTILRIWR*SALGIS Trigger: GCTAATACCCAAGGCACTGCAGCGCCAAATCCTCAG...AATAGTAAAATGATCGCCCTGCTGTGAGTAACAAGACATTTGCTTCTGTCCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR TCA 90 bp | AGAAGCAAATGTCTTGTTACTCACAGCAGGGCGATCATTTTACTATTAACATGCGCATTTGGTGTTCCCTaGCCAGGCTTCTTGTTTGCA | + |
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Preference number: 4 (lower is better) Translates to: RSKCLVTHSRAIILLLTCAFGVP*PGFLFA Trigger: TGCAAACAAGAAGCCTGGTCAGGGAACACCAAATGC...GCATGTTAATAGTAAAATGATCGCCCTGCTGTGAGTAACAAGACATTTGCTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR GCA 90 bp | TTTGGGGCTAGCCTAGACTACATTTGCAAAATCTTGTCTCTAAACAATGGACAGGTAATCTTAAACCCCTaGAGAGCATCTCTGGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: FGASLDYICKILSLNNGQVILNP*RASLAA Trigger: AGCTGCCAGAGATGCTCTGCAGGGGTTTAAGATTAC...CTGTCCATTGTTTAGAGACAAGATTTTGCAAATGTAGTCTAGGCTAGCCCCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR GCA 90 bp | TTTGGACAGAAGCAAATGTCTTGTTACTCACAGCAGGGCGATCATTTTACTATTATCAGAATCTGTTTTTaGGTACTGAATTCTCATTGG | + |
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Preference number: 4 (lower is better) Translates to: FGQKQMSCYSQQGDHFTIIRICF*VLNSHW Trigger: CCAATGAGAATTCAGTACGCAAAAACAGATTCTGAT...AATAGTAAAATGATCGCCCTGCTGTGAGTAACAAGACATTTGCTTCTGTCCAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR CAA 90 bp | CTGCCTCTGCCCCCACAATGCTGGAATTATACGCAGGCAGTACCAAGCCTGAGAACCAAGCGAACTTCCTaGAATCCAGGGAACTGGTTG | + |
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Preference number: 5 (lower is better) Translates to: LPLPPQCWNYTQAVPSLRTKRTS*NPGNWL Trigger: CAACCAGTTCCCTGGATTCAAGGAAGTTCGCTTGGT...TCTCAGGCTTGGTACTGCCTGCGTATAATTCCAGCATTGTGGGGGCAGAGGCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR CAA 90 bp | GCAGCTGCTATCACATGGCCACTAATACTGTGCAATCCCTACTCCATCCAGCAAACTGTCTCAAAGCATTaGTGGATGAACCCAGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: AAAITWPLILCNPYSIQQTVSKH*WMNPVP Trigger: AGGAACTGGGTTCATCCACAAATGCTTTGAGACAGT...TTGCTGGATGGAGTAGGGATTGCACAGTATTAGTGGCCATGTGATAGCAGCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR CAA 90 bp | AGAAGCAAATGTCTTGTTACTCACAGCAGGGCGATCATTTTACTATTAACATGCGACCAGGCTTCTTGTTaGCAGCAGCTGCAGCCTGTT | + |
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Preference number: 5 (lower is better) Translates to: RSKCLVTHSRAIILLLTCDQASC*QQLQPV Trigger: AACAGGCTGCAGCTGCTGCAAACAAGAAGCCTGGTC...GCATGTTAATAGTAAAATGATCGCCCTGCTGTGAGTAACAAGACATTTGCTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR CAA 90 bp | GCAGCTGCTATCACATGGCCACTAATACTGTGCAATCCCTACTCCATCCAGCAAGAAATAGGATATAATTaGGAGGATAATCAGGGACCT | + |
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Preference number: 5 (lower is better) Translates to: AAAITWPLILCNPYSIQQEIGYN*EDNQGP Trigger: AGGTCCCTGATTATCCTCCAAATTATATCCTATTTC...TTGCTGGATGGAGTAGGGATTGCACAGTATTAGTGGCCATGTGATAGCAGCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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| CDS-3UTR CAA 90 bp | TTTGGACAGAAGCAAATGTCTTGTTACTCACAGCAGGGCGATCATTTTACTATTAATCCAGGGAACTGGTaGAACAGCATGGATAACATC | + |
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Preference number: 5 (lower is better) Translates to: FGQKQMSCYSQQGDHFTINPGNW*NSMDNI Trigger: GATGTTATCCATGCTGTTCAACCAGTTCCCTGGATT...AATAGTAAAATGATCGCCCTGCTGTGAGTAACAAGACATTTGCTTCTGTCCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000008477.13 |
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