Pregenerated sensors for SNRPB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027404Ensembl transcript IDs: ENSMUST00000103199.9, ENSMUST00000147570.3
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCCCTCCAACACCTCGGACTGGCCCAGCAAGTCCTGCAGGAGCCTaGGGCATAGGAACACCAGCCGGGATTCCTCTGCCAGCAGCCCTG | + |
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Preference number: 1 (lower is better) Translates to: GPPTPRTGPASPAGA*GIGTPAGIPLPAAL Trigger: CAGGGCTGCTGGCAGAGGAATCCCGGCTGGTGTTCCTATGCCCCAGGCTCCTGCAGGACTTGCTGGGCCAGTCCGAGGTGTTGGAGGGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR CCA 90 bp | GAGTTCCTCGGCCAGGAGGGAGCCCCATTGGGGGACCCATGGGAGGCCGCATGCTCCTCGGCCCATAGGTaGAGGAGGACCCCCACGACC | + |
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Preference number: 2 (lower is better) Translates to: EFLGQEGAPLGDPWEAACSSAHR*RRTPTT Trigger: GGTCGTGGGGGTCCTCCTCCACCTATGGGCCGAGGA...GCATGCGGCCTCCCATGGGTCCCCCAATGGGGCTCCCTCCTGGCCGAGGAACTC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR GCA 90 bp | GGAGTTCCTCGGCCAGGAGGGAGCCCCATTGGGGGACCCATGGGAGGCCGCATGTGGCCCAGCAAGTCCTaGAGGAGCCTGGGGCATAGG | + |
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Preference number: 2 (lower is better) Translates to: GVPRPGGSPIGGPMGGRMWPSKS*RSLGHR Trigger: CCTATGCCCCAGGCTCCTGCAGGACTTGCTGGGCCA...CATGCGGCCTCCCATGGGTCCCCCAATGGGGCTCCCTCCTGGCCGAGGAACTCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR CCA 90 bp | GACCCATGGGAGGCCGCATGCCAGGAGGTGGGCCCATCATACCTGGAGGAGGGGAGTCCTGCAGGAGCCTaGGGCATAGGAACACCAGCC | + |
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Preference number: 2 (lower is better) Translates to: DPWEAACQEVGPSYLEEGSPAGA*GIGTPA Trigger: GGCTGGTGTTCCTATGCCCCAGGCTCCTGCAGGACT...CCCCTCCTCCAGGTATGATGGGCCCACCTCCTGGCATGCGGCCTCCCATGGGTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR CCA 90 bp | GGACCCATGGGAGGCCGCATGCCAGGAGGTGGGCCCATCATACCTGGAGGAGGGCATCACCTGTTGGGATaGCCCTCCAACACCTCGGAC | + |
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Preference number: 2 (lower is better) Translates to: GPMGGRMPGGGPIIPGGGHHLLG*PSNTSD Trigger: GTCCGAGGTGTTGGAGGGCCATCCCAACAGGTGATG...CCCTCCTCCAGGTATGATGGGCCCACCTCCTGGCATGCGGCCTCCCATGGGTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR CCA 90 bp | CATGGGAGGCCGCATGCCAGGAGGTGGGCCCATCATACCTGGAGGAGGGGCTCCGGGGTCATCACCTGTTaGGATGGCCCTCCAACACCT | + |
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Preference number: 2 (lower is better) Translates to: HGRPHARRWAHHTWRRGSGVITC*DGPPTP Trigger: AGGTGTTGGAGGGCCATCCCAACAGGTGATGACCCC...GGAGCCCCTCCTCCAGGTATGATGGGCCCACCTCCTGGCATGCGGCCTCCCATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR GCA 90 bp | CATTGGGGGACCCATGGGAGGCCGCATGCCAGGAGGTGGGCCCATCATACCTGGCAGCAGCTGCAACAGTaGCTCTTCCTTGTGGGGTCA | + |
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Preference number: 2 (lower is better) Translates to: HWGTHGRPHARRWAHHTWQQLQQ*LFLVGS Trigger: TGACCCCACAAGGAAGAGGCACTGTTGCAGCTGCTG...CCAGGTATGATGGGCCCACCTCCTGGCATGCGGCCTCCCATGGGTCCCCCAATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR CCA 90 bp | CATGGGAGGCCGCATGCCAGGAGGTGGGCCCATCATACCTGGAGGAGGGGCTCCGTCCTTCTACTGTCATaGAGACCAGGTTCTCCCCTC | + |
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Preference number: 2 (lower is better) Translates to: HGRPHARRWAHHTWRRGSVLLLS*RPGSPL Trigger: GAGGGGAGAACCTGGTCTCCATGACAGTAGAAGGAC...GGAGCCCCTCCTCCAGGTATGATGGGCCCACCTCCTGGCATGCGGCCTCCCATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR CCA 90 bp | GAGGGAGCCCCATTGGGGGACCCATGGGAGGCCGCATGCCAGGAGGTGGGCCCACAATGCCAGTATCTTTaGGAGGAGGTCCTTCTACTG | + |
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Preference number: 2 (lower is better) Translates to: EGAPLGDPWEAACQEVGPQCQYL*EEVLLL Trigger: CAGTAGAAGGACCTCCTCCCAAAGATACTGGCATTG...TGGGCCCACCTCCTGGCATGCGGCCTCCCATGGGTCCCCCAATGGGGCTCCCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR TCA 90 bp | TGTTGGGATGGCCCTCCAACACCTCGGACTGGCCCAGCAAGTCCTGCAGGAGCCGGAGTTCTTTGGCCCTaGAGAGGGTCAGAGGCTTCT | + |
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Preference number: 2 (lower is better) Translates to: CWDGPPTPRTGPASPAGAGVLWP*RGSEAS Trigger: AGAAGCCTCTGACCCTCTTCAGGGCCAAAGAACTCC...GGCTCCTGCAGGACTTGCTGGGCCAGTCCGAGGTGTTGGAGGGCCATCCCAACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR CCA 90 bp | CATGGGAGGCCGCATGCCAGGAGGTGGGCCCATCATACCTGGAGGAGGGGCTCCCCCTTTCTGCTTGTTTaGAGTTCTTTGGCCCTGAAG | + |
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Preference number: 2 (lower is better) Translates to: HGRPHARRWAHHTWRRGSPFLLV*SSLALK Trigger: CTTCAGGGCCAAAGAACTCCAAACAAGCAGAAAGGG...GGAGCCCCTCCTCCAGGTATGATGGGCCCACCTCCTGGCATGCGGCCTCCCATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR GCA 90 bp | AGGGAGCCCCATTGGGGGACCCATGGGAGGCCGCATGCCAGGAGGTGGGCCCATCTTCTCTTCCCTTTCTaGTTGTTTGGAGTTCTTTGG | + |
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Preference number: 2 (lower is better) Translates to: REPHWGTHGRPHARRWAHLLFPF*LFGVLW Trigger: CCAAAGAACTCCAAACAAGCAGAAAGGGAAGAGAAG...ATGGGCCCACCTCCTGGCATGCGGCCTCCCATGGGTCCCCCAATGGGGCTCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR TCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTCCAGGGAGGGAGCCCTaGAAGGGAAACCAGACAATC | + |
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Preference number: 2 (lower is better) Translates to: IQPFGKETGKELRRTKMSPGREP*KGNQTI Trigger: GATTGTCTGGTTTCCCTTTCAGGGCTCCCTCCCTGG...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| 3UTR GCA 72 bp | GAGGGAGCCCCATTGGGGGACCCATGGGAGGCCGCATaGCAGGAGGTGGGCCCATCATACCTGGAGGAGGGG | + |
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Preference number: 3 (lower is better) Translates to: EGAPLGDPWEAA*QEVGPSYLEEG Trigger: CCCCTCCTCCAGGTATGATGGGCCCACCTCCTGGCATGCGGCCTCCCATGGGTCCCCCAATGGGGCTCCCTC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR CCA 72 bp | GCCCATTGGAGTTCCTCGGCCAGGAGGGAGCCCCATTaGGGGACCCATGGGAGGCCGCATGCCAGGAGGTGG | + |
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Preference number: 3 (lower is better) Translates to: AHWSSSARREPH*GTHGRPHARRW Trigger: CCACCTCCTGGCATGCGGCCTCCCATGGGTCCCCCAATGGGGCTCCCTCCTGGCCGAGGAACTCCAATGGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR CAA 90 bp | TCGGCCAGGAGGGAGCCCCATTGGGGGACCCATGGGAGGCCGCATGCCAGGAGGTGGGGTCATCACCTGTaGGGATGGCCCTCCAACACC | + |
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Preference number: 3 (lower is better) Translates to: SARREPHWGTHGRPHARRWGHHL*GWPSNT Trigger: GGTGTTGGAGGGCCATCCCAACAGGTGATGACCCCA...CCTCCTGGCATGCGGCCTCCCATGGGTCCCCCAATGGGGCTCCCTCCTGGCCGA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR CCA 72 bp | ACACCTCGGACTGGCCCAGCAAGTCCTGCAGGAGCCTaGGGCATAGGAACACCAGCCGGGATTCCTCTGCCA | + |
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Preference number: 3 (lower is better) Translates to: TPRTGPASPAGA*GIGTPAGIPLP Trigger: TGGCAGAGGAATCCCGGCTGGTGTTCCTATGCCCCAGGCTCCTGCAGGACTTGCTGGGCCAGTCCGAGGTGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| 3UTR-3UTR CAA 90 bp | GGCATGCCCATTGGAGTTCCTCGGCCAGGAGGGAGCCCCATTGGGGGACCCATGGCAATGCCAGTATCTTaGGGAGGAGGTCCTTCTACT | + |
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Preference number: 3 (lower is better) Translates to: GMPIGVPRPGGSPIGGPMAMPVS*GGGPST Trigger: AGTAGAAGGACCTCCTCCCAAAGATACTGGCATTGC...CATGGGTCCCCCAATGGGGCTCCCTCCTGGCCGAGGAACTCCAATGGGCATGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| CDS-3UTR GCA 90 bp | CCATGGGAGGCCGCATGCCAGGAGGTGGGCCCATCATACCTGGAGGAGGGGCTCAAGATGCGGCCGTCCTaGAGGATGCACCTCATCCTG | + |
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Preference number: 4 (lower is better) Translates to: PWEAACQEVGPSYLEEGLKMRPS*RMHLIL Trigger: CAGGATGAGGTGCATCCTGCAGGACGGCCGCATCTT...GAGCCCCTCCTCCAGGTATGATGGGCCCACCTCCTGGCATGCGGCCTCCCATGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| CDS-3UTR GCA 90 bp | CATTGGGGGACCCATGGGAGGCCGCATGCCAGGAGGTGGGCCCATCATACCTGGGGCCGTCCTGCAGGATaGACCTCATCCTGTAGTCAA | + |
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Preference number: 4 (lower is better) Translates to: HWGTHGRPHARRWAHHTWGRPAG*TSSCSQ Trigger: TTGACTACAGGATGAGGTGCATCCTGCAGGACGGCC...CCAGGTATGATGGGCCCACCTCCTGGCATGCGGCCTCCCATGGGTCCCCCAATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147570.3 |
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| CDS-3UTR CCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTAGGAGGGAGCCCCATTaGGGGACCCATGGGAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSRREPH*GTHGRP Trigger: CGGCCTCCCATGGGTCCCCCAATGGGGCTCCCTCCT...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR GCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTCAGCCGGGATTCCTCTaGCAGCAGCCCTGCCGATGC | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSQPGFL*QQPCRC Trigger: GCATCGGCAGGGCTGCTGGCAGAGGAATCCCGGCTG...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTTCCTCGGCCCATAGGTaGAGGAGGACCCCCACGACC | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSSSAHR*RRTPTT Trigger: GGTCGTGGGGGTCCTCCTCCACCTATGGGCCGAGGA...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTCCATTGGGGGACCCATaGGAGGCCGCATGCCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSPLGDP*EAACQE Trigger: CTCCTGGCATGCGGCCTCCCATGGGTCCCCCAATGG...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR GCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTTGGCCCAGCAAGTCCTaGAGGAGCCTGGGGCATAGG | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSWPSKS*RSLGHR Trigger: CCTATGCCCCAGGCTCCTGCAGGACTTGCTGGGCCA...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR GCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTTGCCAGGAGGGGGCATaGCCATTGGAGTTCCTCGGC | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSCQEGA*PLEFLG Trigger: GCCGAGGAACTCCAATGGGCATGCCCCCTCCTGGCA...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTCCGCATGCCAGGAGGTaGGCCCATCATACCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSPHARR*AHHTWR Trigger: CCTCCAGGTATGATGGGCCCACCTCCTGGCATGCGG...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTAGGGGGCATGCCCATTaGAGTTCCTCGGCCAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSRGHAH*SSSARR Trigger: CCTCCTGGCCGAGGAACTCCAATGGGCATGCCCCCT...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTAGTCCTGCAGGAGCCTaGGGCATAGGAACACCAGCC | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSSPAGA*GIGTPA Trigger: GGCTGGTGTTCCTATGCCCCAGGCTCCTGCAGGACT...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTTCCAACACCTCGGACTaGCCCAGCAAGTCCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSSNTSD*PSKSCR Trigger: CCTGCAGGACTTGCTGGGCCAGTCCGAGGTGTTGGA...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR GCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTAAGATGCGGCCGTCCTaGAGGATGCACCTCATCCTG | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSKMRPS*RMHLIL Trigger: CAGGATGAGGTGCATCCTGCAGGACGGCCGCATCTT...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTCATCACCTGTTGGGATaGCCCTCCAACACCTCGGAC | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSHHLLG*PSNTSD Trigger: GTCCGAGGTGTTGGAGGGCCATCCCAACAGGTGATG...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTGGGGTCATCACCTGTTaGGATGGCCCTCCAACACCT | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSGVITC*DGPPTP Trigger: AGGTGTTGGAGGGCCATCCCAACAGGTGATGACCCC...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR GCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTGGCCGTCCTGCAGGATaGACCTCATCCTGTAGTCAA | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSGRPAG*TSSCSQ Trigger: TTGACTACAGGATGAGGTGCATCCTGCAGGACGGCC...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR GCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTCAGCAGCTGCAACAGTaGCTCTTCCTTGTGGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSQQLQQ*LFLVGS Trigger: TGACCCCACAAGGAAGAGGCACTGTTGCAGCTGCTG...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTGTCCTTCTACTGTCATaGAGACCAGGTTCTCCCCTC | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSVLLLS*RPGSPL Trigger: GAGGGGAGAACCTGGTCTCCATGACAGTAGAAGGAC...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTCAATGCCAGTATCTTTaGGAGGAGGTCCTTCTACTG | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSQCQYL*EEVLLL Trigger: CAGTAGAAGGACCTCCTCCCAAAGATACTGGCATTG...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR GCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTCTTCTCTTCCCTTTCTaGTTGTTTGGAGTTCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSLLFPF*LFGVLW Trigger: CCAAAGAACTCCAAACAAGCAGAAAGGGAAGAGAAG...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR GCA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTAGGATCAAGTTCATGTaGTTGTCAAAGGCTTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: IQPFGKETGKELRRTKMSRIKFM*LSKALK Trigger: CTTCAAAGCCTTTGACAAGCACATGAACTTGATCCT...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CAA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTCAGGAGGGAGCCCCATaGGGGGACCCATGGGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: IQPFGKETGKELRRTKMSQEGAP*GDPWEA Trigger: GGCCTCCCATGGGTCCCCCAATGGGGCTCCCTCCTG...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CAA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTGAGGGGGCATGCCCATaGGAGTTCCTCGGCCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: IQPFGKETGKELRRTKMSEGACP*EFLGQE Trigger: CTCCTGGCCGAGGAACTCCAATGGGCATGCCCCCTC...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CAA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTTGGGGTCATCACCTGTaGGGATGGCCCTCCAACACC | + |
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Preference number: 5 (lower is better) Translates to: IQPFGKETGKELRRTKMSWGHHL*GWPSNT Trigger: GGTGTTGGAGGGCCATCCCAACAGGTGATGACCCCA...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CAA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTGCAATGCCAGTATCTTaGGGAGGAGGTCCTTCTACT | + |
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Preference number: 5 (lower is better) Translates to: IQPFGKETGKELRRTKMSAMPVS*GGGPST Trigger: AGTAGAAGGACCTCCTCCCAAAGATACTGGCATTGC...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CAA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTTCCCTTTCTGCTTGTTaGGAGTTCTTTGGCTTGATC | + |
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Preference number: 5 (lower is better) Translates to: IQPFGKETGKELRRTKMSSLSAC*EFFGLI Trigger: GATCAAGCCAAAGAACTCCAAACAAGCAGAAAGGGA...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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| CDS-3UTR CAA 90 bp | ATACAGCCTTTTGGGAAGGAAACAGGCAAGGAGCTGAGGAGAACCAAGATGAGTTTGGAGTTCTTTGGCTaGATCTTCCTGAACTCATCA | + |
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Preference number: 5 (lower is better) Translates to: IQPFGKETGKELRRTKMSLEFFG*IFLNSS Trigger: TGATGAGTTCAGGAAGATCAAGCCAAAGAACTCCAA...ACTCATCTTGGTTCTCCTCAGCTCCTTGCCTGTTTCCTTCCCAAAAGGCTGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103199.9 |
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