Pregenerated sensors for SNRPA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030512Ensembl transcript IDs: ENSMUST00000032723.9, ENSMUST00000153609.8
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTTGTCCCAAGAGAGCTTATCAGAGCATCTGGCAGAGCTCAGGACCCATTTGTGCTCATCACTCGGCCCTaGTCTGCGCTCTCTGCCAGG | + |
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Preference number: 2 (lower is better) Translates to: LVPRELIRASGRAQDPFVLITRP*SALSAR Trigger: CCTGGCAGAGAGCGCAGATCAGGGCCGAGTGATGAG...CACAAATGGGTCCTGAGCTCTGCCAGATGCTCTGATAAGCTCTCTTGGGACAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032723.9 |
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| 3UTR-3UTR GCA 90 bp | TGTCCCAAGAGAGCTTATCAGAGCATCTGGCAGAGCTCAGGACCCATTTGTGACCAGCGTCGACGCGTTTaGGATGGCATTCTTGATTGC | + |
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Preference number: 2 (lower is better) Translates to: CPKRAYQSIWQSSGPICDQRRRV*DGILDC Trigger: GCAATCAAGAATGCCATCGCAAACGCGTCGACGCTG...GTCACAAATGGGTCCTGAGCTCTGCCAGATGCTCTGATAAGCTCTCTTGGGACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032723.9 |
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| 3UTR-3UTR GCA 90 bp | ATCACCAGTCGTTCTGAACATTCAGCAAAGCTGAGAGTCCACGTTGCTGATACAAAGGTTGTTACTCCATaGTCAAAATGCAAGACTTGT | + |
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Preference number: 2 (lower is better) Translates to: ITSRSEHSAKLRVHVADTKVVTP*SKCKTC Trigger: ACAAGTCTTGCATTTTGAGCATGGAGTAACAACCTT...TGTATCAGCAACGTGGACTCTCAGCTTTGCTGAATGTTCAGAACGACTGGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032723.9 ENSMUST00000153609.8 |
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| 3UTR-3UTR CAA 90 bp | ATCACCAGTCGTTCTGAACATTCAGCAAAGCTGAGAGTCCACGTTGCTGATACACTCAAAATGCAAGACTaGTCCCAAGAGAGCTTATCA | + |
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Preference number: 3 (lower is better) Translates to: ITSRSEHSAKLRVHVADTLKMQD*SQESLS Trigger: TGATAAGCTCTCTTGGGACAAGTCTTGCATTTTGAG...TGTATCAGCAACGTGGACTCTCAGCTTTGCTGAATGTTCAGAACGACTGGTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032723.9 ENSMUST00000153609.8 |
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| 3UTR GCA 72 bp | GCTGATACAAGCAAGGTTGTTACTCCATGCTCAAAATaGAAGACTTGTCCCAAGAGAGCTTATCAGAGCATC | + |
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Preference number: 3 (lower is better) Translates to: ADTSKVVTPCSK*KTCPKRAYQSI Trigger: GATGCTCTGATAAGCTCTCTTGGGACAAGTCTTGCATTTTGAGCATGGAGTAACAACCTTGCTTGTATCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032723.9 ENSMUST00000153609.8 |
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| CDS-3UTR TCA 90 bp | CGTTCTGAACATTCAGCAAAGCTGAGAGTCCACGTTGCTGATACAAGCAAGGTTCTCATCACTCGGCCCTaGTCTGCGCTCTCTGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RSEHSAKLRVHVADTSKVLITRP*SALSAR Trigger: CCTGGCAGAGAGCGCAGATCAGGGCCGAGTGATGAG...AACCTTGCTTGTATCAGCAACGTGGACTCTCAGCTTTGCTGAATGTTCAGAACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153609.8 |
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| CDS-3UTR GCA 90 bp | ATCACCAGTCGTTCTGAACATTCAGCAAAGCTGAGAGTCCACGTTGCTGATACACAGCGTCGACGCGTTTaGGATGGCATTCTTGATTGC | + |
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Preference number: 4 (lower is better) Translates to: ITSRSEHSAKLRVHVADTQRRRV*DGILDC Trigger: GCAATCAAGAATGCCATCGCAAACGCGTCGACGCTG...TGTATCAGCAACGTGGACTCTCAGCTTTGCTGAATGTTCAGAACGACTGGTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153609.8 |
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| CDS-3UTR TCA 90 bp | CGTTCTGAACATTCAGCAAAGCTGAGAGTCCACGTTGCTGATACAAGCAAGGTTTTGCGATGGCATTCTTaGTTGCTTCCACATCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: RSEHSAKLRVHVADTSKVLRWHS*LLPHPL Trigger: CAGGGGATGTGGAAGCAATCAAGAATGCCATCGCAA...AACCTTGCTTGTATCAGCAACGTGGACTCTCAGCTTTGCTGAATGTTCAGAACG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153609.8 |
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| CDS-3UTR TCA 90 bp | CGTTCTGAACATTCAGCAAAGCTGAGAGTCCACGTTGCTGATACAAGCAAGGTTGATATGTCAGTGATTTaGGAGATGCCAACGGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: RSEHSAKLRVHVADTSKVDMSVI*EMPTGP Trigger: TGGACCCGTTGGCATCTCTCAAATCACTGACATATC...AACCTTGCTTGTATCAGCAACGTGGACTCTCAGCTTTGCTGAATGTTCAGAACG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032723.9 ENSMUST00000153609.8 |
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| CDS-3UTR TCA 90 bp | ATCACCAGTCGTTCTGAACATTCAGCAAAGCTGAGAGTCCACGTTGCTGATACAGATATGTCAGTGATTTaGGAGATGCCAACGGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: ITSRSEHSAKLRVHVADTDMSVI*EMPTGP Trigger: TGGACCCGTTGGCATCTCTCAAATCACTGACATATC...TGTATCAGCAACGTGGACTCTCAGCTTTGCTGAATGTTCAGAACGACTGGTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032723.9 ENSMUST00000153609.8 |
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