Pregenerated sensors for SNRPA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061479Ensembl transcript IDs: ENSMUST00000080356.10, ENSMUST00000122202.8, ENSMUST00000126211.2, ENSMUST00000141378.2, ENSMUST00000163311.9
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACATAGGTGCCCTTCATCTTGGCAATGATGTCCGAGTCAGTCTTTaGGTACTGGATGCGCATGGGCTTGTCGTAGAAAGGGAAGCCCTG | + |
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Preference number: 1 (lower is better) Translates to: HIGALHLGNDVRVSL*VLDAHGLVVEREAL Trigger: CAGGGCTTCCCTTTCTACGACAAGCCCATGCGCATCCAGTACGCAAAGACTGACTCGGACATCATTGCCAAGATGAAGGGCACCTATGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141378.2 |
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| 3UTR TCA 90 bp | GAGAAGATGGCATACAGGGACTTCTTGAGCTCCTTCCTTAACTTCTaGATTACTTCCACAAAGCAATGCACCAAGGGGCCAGTGCAAGGG | + |
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Preference number: 1 (lower is better) Translates to: EKMAYRDFLSSFLNF*ITSTKQCTKGPVQG Trigger: CCCTTGCACTGGCCCCTTGGTGCATTGCTTTGTGGAAGTAATTCAGAAGTTAAGGAAGGAGCTCAAGAAGTCCCTGTATGCCATCTTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141378.2 |
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| 3UTR CCA 90 bp | ATCTTCATGATCCGAGACACCAGGATATCCAGGATCTGGCCAAACTaGGAGAAGATGGCATACAGGGACTTCTTGAGCTCCTTCCTTAAC | + |
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Preference number: 1 (lower is better) Translates to: IFMIRDTRISRIWPN*EKMAYRDFLSSFLN Trigger: GTTAAGGAAGGAGCTCAAGAAGTCCCTGTATGCCATCTTCTCCCAGTTTGGCCAGATCCTGGATATCCTGGTGTCTCGGATCATGAAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141378.2 |
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| 3UTR-3UTR CCA 90 bp | GGATGCGCATGGGCTTGTCGTAGAAAGGGAAGCCCTGCATGGAGCGCAGGGCATAGGATATCCAGGATCTaGCCAAACTGGGAGAAGATG | + |
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Preference number: 2 (lower is better) Translates to: GCAWACRRKGSPAWSAGHRISRI*PNWEKM Trigger: CATCTTCTCCCAGTTTGGCCAGATCCTGGATATCCT...ATGCCCTGCGCTCCATGCAGGGCTTCCCTTTCTACGACAAGCCCATGCGCATCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141378.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCTCCACATAGGTGCCCTTCATCTTGGCAATGATGTCCGAGTCAGTCTTTGCGCACCAAGGGGCCAGTaGAAGGGCAGTAGAGCATCC | + |
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Preference number: 2 (lower is better) Translates to: SLHIGALHLGNDVRVSLCAPRGQ*KGSRAS Trigger: GGATGCTCTACTGCCCTTGCACTGGCCCCTTGGTGC...GCAAAGACTGACTCGGACATCATTGCCAAGATGAAGGGCACCTATGTGGAGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141378.2 |
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| 3UTR CCA 72 bp | CTAACAGCGCCAGGTGCAATGTCTGGGGACAGACTCTaGGTACAATGCTGTGTGGCAACCACACACACACGG | + |
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Preference number: 3 (lower is better) Translates to: LTAPGAMSGDRL*VQCCVATTHTR Trigger: CCGTGTGTGTGTGGTTGCCACACAGCATTGTACCCAGAGTCTGTCCCCAGACATTGCACCTGGCGCTGTTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| 3UTR CCA 72 bp | ATCCGAGACACCAGGATATCCAGGATCTGGCCAAACTaGGAGAAGATGGCATACAGGGACTTCTTGAGCTCC | + |
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Preference number: 3 (lower is better) Translates to: IRDTRISRIWPN*EKMAYRDFLSS Trigger: GGAGCTCAAGAAGTCCCTGTATGCCATCTTCTCCCAGTTTGGCCAGATCCTGGATATCCTGGTGTCTCGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141378.2 |
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| 3UTR CCA 72 bp | ATCTTCATGATCCGAGACACCAGGATATCCAGGATCTaGCCAAACTGGGAGAAGATGGCATACAGGGACTTC | + |
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Preference number: 3 (lower is better) Translates to: IFMIRDTRISRI*PNWEKMAYRDF Trigger: GAAGTCCCTGTATGCCATCTTCTCCCAGTTTGGCCAGATCCTGGATATCCTGGTGTCTCGGATCATGAAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141378.2 |
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| 3UTR TCA 72 bp | GCATACAGGGACTTCTTGAGCTCCTTCCTTAACTTCTaGATTACTTCCACAAAGCAATGCACCAAGGGGCCA | + |
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Preference number: 3 (lower is better) Translates to: AYRDFLSSFLNF*ITSTKQCTKGP Trigger: TGGCCCCTTGGTGCATTGCTTTGTGGAAGTAATTCAGAAGTTAAGGAAGGAGCTCAAGAAGTCCCTGTATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000141378.2 |
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| CDS-3UTR CCA 90 bp | CACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGATGCCCGGTACGGGCTaGACAGCCCCCACCACGGGC | + |
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Preference number: 4 (lower is better) Translates to: HGSEKVPKGDLPSGTEPRMPGTG*TAPTTG Trigger: GCCCGTGGTGGGGGCTGTCCAGCCCGTACCGGGCAT...CCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | TCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGAGGGGATGCCCGGTACGGGCTaGACAGCCCCCACCACGGGC | + |
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Preference number: 4 (lower is better) Translates to: SEKVPKGDLPSGTEPREGMPGTG*TAPTTG Trigger: GCCCGTGGTGGGGGCTGTCCAGCCCGTACCGGGCAT...CCCCTCCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | CCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTATGCCCGGTACGGGCTaGACAGCCCCCACCACGGGC | + |
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Preference number: 4 (lower is better) Translates to: PHTHGSEKVPKGDLPSGTMPGTG*TAPTTG Trigger: GCCCGTGGTGGGGGCTGTCCAGCCCGTACCGGGCAT...AGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | CCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGCATCTGCCCAGGCATaGGCTGCTGTGGGGGCATGG | + |
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Preference number: 4 (lower is better) Translates to: PHTHGSEKVPKGDLPSGTASAQA*AAVGAW Trigger: CCATGCCCCCACAGCAGCTCATGCCTGGGCAGATGC...AGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR GCA 90 bp | ACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGCTGGTGGCGGGATCATaGCAGGTGGCGGCATGTAGG | + |
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Preference number: 4 (lower is better) Translates to: TALRRSLRGTYLQGLSQGLVAGS*QVAACR Trigger: CCTACATGCCGCCACCTGGCATGATCCCGCCACCAG...CCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR GCA 90 bp | GTGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTGCCCAGGCATGAGCTaGTGTGGGGGCATGGCCCCA | + |
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Preference number: 4 (lower is better) Translates to: VWQPHTHGSEKVPKGDLPCPGMS*CGGMAP Trigger: TGGGGCCATGCCCCCACAGCAGCTCATGCCTGGGCA...AGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR GCA 90 bp | GGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGAGTGGGCAGGCGGCATCTaGCCAGGCATGAGCTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: GSEKVPKGDLPSGTEPREWAGGI*PGMSCC Trigger: ACAGCAGCTCATGCCTGGGCAGATGCCGCCTGCCCA...CTCCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | ACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGACGAAGGCGATGTCATaGCGCCCAGGGACCAGACGC | + |
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Preference number: 4 (lower is better) Translates to: TALRRSLRGTYLQGLSQGTKAMS*RPGTRR Trigger: GCGTCTGGTCCCTGGGCGCCATGACATCGCCTTCGT...CCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR GCA 90 bp | ACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCACTGGTGGCGGGATCATaGCAGGTGGCGGCATGTAGG | + |
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Preference number: 4 (lower is better) Translates to: THGSEKVPKGDLPSGTEPLVAGS*QVAACR Trigger: CCTACATGCCGCCACCTGGCATGATCCCGCCACCAG...TGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR GCA 90 bp | CTGGGTACAATGCTGTGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTATGCCCAGGCATGAGCTaGTGTGGGGGCATGGCCCCA | + |
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Preference number: 4 (lower is better) Translates to: LGTMLCGNHTHTALRRSLCPGMS*CGGMAP Trigger: TGGGGCCATGCCCCCACAGCAGCTCATGCCTGGGCA...TAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACACAGCATTGTACCCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | TCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGAGGGGAAGGGAAGCCCTGCATaGAGCGCAGGGCATTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: SEKVPKGDLPSGTEPREGKGSPA*SAGHWW Trigger: CCACCAATGCCCTGCGCTCCATGCAGGGCTTCCCTT...CCCCTCCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | CACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGACGAAGGCGATGTCATaGCGCCCAGGGACCAGACGC | + |
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Preference number: 4 (lower is better) Translates to: HTHTALRRSLRGTYLQGLTKAMS*RPGTRR Trigger: GCGTCTGGTCCCTGGGCGCCATGACATCGCCTTCGT...CAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR GCA 90 bp | TGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCTGGTGGCGGGATCATaGCAGGTGGCGGCATGTAGG | + |
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Preference number: 4 (lower is better) Translates to: CGNHTHTALRRSLRGTYLLVAGS*QVAACR Trigger: CCTACATGCCGCCACCTGGCATGATCCCGCCACCAG...AAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR GCA 90 bp | CTGGGTACAATGCTGTGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTATGGGCAGGCGGCATCTaGCCAGGCATGAGCTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LGTMLCGNHTHTALRRSLWAGGI*PGMSCC Trigger: ACAGCAGCTCATGCCTGGGCAGATGCCGCCTGCCCA...TAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACACAGCATTGTACCCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | TGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCGGGATCATGCCAGGTaGCGGCATGTAGGGAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: CGNHTHTALRRSLRGTYLRDHAR*RHVGRL Trigger: CAGCCTCCCTACATGCCGCCACCTGGCATGATCCCG...AAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | CTGGGTACAATGCTGTGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTACGGGATCATGCCAGGTaGCGGCATGTAGGGAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LGTMLCGNHTHTALRRSLRDHAR*RHVGRL Trigger: CAGCCTCCCTACATGCCGCCACCTGGCATGATCCCG...TAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACACAGCATTGTACCCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | GTGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTGCAGCAGGTGTCTCCTaGCTCTTGGGCTTCCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: VWQPHTHGSEKVPKGDLPAAGVS*LLGFLF Trigger: GAAGAGGAAGCCCAAGAGTCAGGAGACACCTGCTGC...AGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | GGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGAGCCTCAGGCAGGTTGGTaGGGAACAGGATGTGATTGG | + |
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Preference number: 4 (lower is better) Translates to: GSEKVPKGDLPSGTEPREPQAGW*GTGCDW Trigger: CCAATCACATCCTGTTCCTCACCAACCTGCCTGAGG...CTCCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | GGACAGACTCTGGGTACAATGCTGTGTGGCAACCACACACACACGGCTCTGAGAGCAGCAGGTGTCTCCTaGCTCTTGGGCTTCCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: GQTLGTMLCGNHTHTALRAAGVS*LLGFLF Trigger: GAAGAGGAAGCCCAAGAGTCAGGAGACACCTGCTGC...TCTCAGAGCCGTGTGTGTGTGGTTGCCACACAGCATTGTACCCAGAGTCTGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | CACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGGTGAGGAACAGGATGTaGTTGGGTGGGTTCTCGGAG | + |
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Preference number: 4 (lower is better) Translates to: HTHTALRRSLRGTYLQGLVRNRM*LGGFSE Trigger: CTCCGAGAACCCACCCAATCACATCCTGTTCCTCAC...CAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | CAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGGTGAGGAACAGGATGTaGTTGGGTGGGTTCTCGGAG | + |
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Preference number: 4 (lower is better) Translates to: QPHTHGSEKVPKGDLPSGVRNRM*LGGFSE Trigger: CTCCGAGAACCCACCCAATCACATCCTGTTCCTCAC...CCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | GTGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTCCTCAGGCAGGTTGGTaGGGAACAGGATGTGATTGG | + |
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Preference number: 4 (lower is better) Translates to: VWQPHTHGSEKVPKGDLPPQAGW*GTGCDW Trigger: CCAATCACATCCTGTTCCTCACCAACCTGCCTGAGG...AGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | ATGCTGTGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTAGAGCATGGAGAGCATaGGCTCGTTGGTCTCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: MLCGNHTHTALRRSLRGTRAWRA*ARWSPQ Trigger: CTGAGGAGACCAACGAGCTCATGCTCTCCATGCTCT...AGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACACAGCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR GCA 90 bp | ACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGGTGATCTTAAAGCCTTaGAGGGCATCTCGTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: TALRRSLRGTYLQGLSQGVILKP*RASRAA Trigger: GGCAGCACGAGATGCCCTGCAAGGCTTTAAGATCAC...CCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | TCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGAGGGGCCTGAACAGCCTTTTTaGCAGCAGGTGTCTCCTGAC | + |
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Preference number: 4 (lower is better) Translates to: SEKVPKGDLPSGTEPREGPEQPF*QQVSPD Trigger: GTCAGGAGACACCTGCTGCCAAAAAGGCTGTTCAGG...CCCCTCCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | GGACAGACTCTGGGTACAATGCTGTGTGGCAACCACACACACACGGCTCTGAGAGTGAGGAACAGGATGTaGTTGGGTGGGTTCTCGGAG | + |
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Preference number: 4 (lower is better) Translates to: GQTLGTMLCGNHTHTALRVRNRM*LGGFSE Trigger: CTCCGAGAACCCACCCAATCACATCCTGTTCCTCAC...TCTCAGAGCCGTGTGTGTGTGGTTGCCACACAGCATTGTACCCAGAGTCTGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | CTGGGTACAATGCTGTGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTACCTCAGGCAGGTTGGTaGGGAACAGGATGTGATTGG | + |
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Preference number: 4 (lower is better) Translates to: LGTMLCGNHTHTALRRSLPQAGW*GTGCDW Trigger: CCAATCACATCCTGTTCCTCACCAACCTGCCTGAGG...TAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACACAGCATTGTACCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | CTGGGTACAATGCTGTGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGAGCATGGAGAGCATaGGCTCGTTGGTCTCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: LGTMLCGNHTHTALRRSLRAWRA*ARWSPQ Trigger: CTGAGGAGACCAACGAGCTCATGCTCTCCATGCTCT...TAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACACAGCATTGTACCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR GCA 90 bp | ACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAGTGATCTTAAAGCCTTaGAGGGCATCTCGTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: THGSEKVPKGDLPSGTEPVILKP*RASRAA Trigger: GGCAGCACGAGATGCCCTGCAAGGCTTTAAGATCAC...TGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | ACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCACCTGAACAGCCTTTTTaGCAGCAGGTGTCTCCTGAC | + |
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Preference number: 4 (lower is better) Translates to: THGSEKVPKGDLPSGTEPPEQPF*QQVSPD Trigger: GTCAGGAGACACCTGCTGCCAAAAAGGCTGTTCAGG...TGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | GTGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTCCTGAACAGCCTTTTTaGCAGCAGGTGTCTCCTGAC | + |
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Preference number: 4 (lower is better) Translates to: VWQPHTHGSEKVPKGDLPPEQPF*QQVSPD Trigger: GTCAGGAGACACCTGCTGCCAAAAAGGCTGTTCAGG...AGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | GGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGAGTTGAAGCCAGGGAACTaGTTGAAGAGCATGGAGAGC | + |
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Preference number: 4 (lower is better) Translates to: GSEKVPKGDLPSGTEPRELKPGN*LKSMES Trigger: GCTCTCCATGCTCTTCAACCAGTTCCCTGGCTTCAA...CTCCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | TCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGAGGGGTTGAAGCCAGGGAACTaGTTGAAGAGCATGGAGAGC | + |
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Preference number: 4 (lower is better) Translates to: SEKVPKGDLPSGTEPREGLKPGN*LKSMES Trigger: GCTCTCCATGCTCTTCAACCAGTTCCCTGGCTTCAA...CCCCTCCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | AATCACAATCTAACAGCGCCAGGTGCAATGTCTGGGGACAGACTCTGGGTACAAACGAAGGCGATGTCATaGCGCCCAGGGACCAGACGC | + |
|
Preference number: 4 (lower is better) Translates to: NHNLTAPGAMSGDRLWVQTKAMS*RPGTRR Trigger: GCGTCTGGTCCCTGGGCGCCATGACATCGCCTTCGT...TTGTACCCAGAGTCTGTCCCCAGACATTGCACCTGGCGCTGTTAGATTGTGATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | GGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGAGCCTTCATCTTGGCAATaGTGTCCGAGTCAGTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: GSEKVPKGDLPSGTEPREPSSWQ*CPSQSL Trigger: CAAAGACTGACTCGGACATCATTGCCAAGATGAAGG...CTCCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR GCA 90 bp | GGACAGACTCTGGGTACAATGCTGTGTGGCAACCACACACACACGGCTCTGAGAGTGATCTTAAAGCCTTaGAGGGCATCTCGTGCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: GQTLGTMLCGNHTHTALRVILKP*RASRAA Trigger: GGCAGCACGAGATGCCCTGCAAGGCTTTAAGATCAC...TCTCAGAGCCGTGTGTGTGTGGTTGCCACACAGCATTGTACCCAGAGTCTGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | TGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTGGAACAGGATGTGATTaGGTGGGTTCTCGGAGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: CGNHTHTALRRSLRGTYLGTGCD*VGSRRE Trigger: CTCTCTCCGAGAACCCACCCAATCACATCCTGTTCC...AAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | CCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTCCTTCATCTTGGCAATaGTGTCCGAGTCAGTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: PHTHGSEKVPKGDLPSGTPSSWQ*CPSQSL Trigger: CAAAGACTGACTCGGACATCATTGCCAAGATGAAGG...AGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | CTGGGTACAATGCTGTGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGATCTGGCCAAACTaGGAGAAGATGGCATACAGG | + |
|
Preference number: 4 (lower is better) Translates to: LGTMLCGNHTHTALRRSLRIWPN*EKMAYR Trigger: CCTGTATGCCATCTTCTCCCAGTTTGGCCAGATCCT...TAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACACAGCATTGTACCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | TGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTAGGATCTGGCCAAACTaGGAGAAGATGGCATACAGG | + |
|
Preference number: 4 (lower is better) Translates to: CGNHTHTALRRSLRGTYLRIWPN*EKMAYR Trigger: CCTGTATGCCATCTTCTCCCAGTTTGGCCAGATCCT...AAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | GGACAGACTCTGGGTACAATGCTGTGTGGCAACCACACACACACGGCTCTGAGAAGGATCTGGCCAAACTaGGAGAAGATGGCATACAGG | + |
|
Preference number: 4 (lower is better) Translates to: GQTLGTMLCGNHTHTALRRIWPN*EKMAYR Trigger: CCTGTATGCCATCTTCTCCCAGTTTGGCCAGATCCT...TCTCAGAGCCGTGTGTGTGTGGTTGCCACACAGCATTGTACCCAGAGTCTGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | GGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGAGGATATCCAGGATCTaGCCAAACTGGGAGAAGATG | + |
|
Preference number: 4 (lower is better) Translates to: GNHTHTALRRSLRGTYLQRISRI*PNWEKM Trigger: CATCTTCTCCCAGTTTGGCCAGATCCTGGATATCCT...CTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | CAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGAGGATATCCAGGATCTaGCCAAACTGGGAGAAGATG | + |
|
Preference number: 4 (lower is better) Translates to: QPHTHGSEKVPKGDLPSGRISRI*PNWEKM Trigger: CATCTTCTCCCAGTTTGGCCAGATCCTGGATATCCT...CCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | TGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTTTGAAGCCAGGGAACTaGTTGAAGAGCATGGAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: CGNHTHTALRRSLRGTYLLKPGN*LKSMES Trigger: GCTCTCCATGCTCTTCAACCAGTTCCCTGGCTTCAA...AAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR TCA 90 bp | AATCACAATCTAACAGCGCCAGGTGCAATGTCTGGGGACAGACTCTGGGTACAAAGAGCATGGAGAGCATaGGCTCGTTGGTCTCCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: NHNLTAPGAMSGDRLWVQRAWRA*ARWSPQ Trigger: CTGAGGAGACCAACGAGCTCATGCTCTCCATGCTCT...TTGTACCCAGAGTCTGTCCCCAGACATTGCACCTGGCGCTGTTAGATTGTGATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR GCA 90 bp | ACCTCAAAAACTCACTTTAATCACAATCTAACAGCGCCAGGTGCAATGTCTGGGTGGGCAGGCGGCATCTaGCCAGGCATGAGCTGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: TSKTHFNHNLTAPGAMSGWAGGI*PGMSCC Trigger: ACAGCAGCTCATGCCTGGGCAGATGCCGCCTGCCCA...CCCAGACATTGCACCTGGCGCTGTTAGATTGTGATTAAAGTGAGTTTTTGAGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | TCAAAAACTCACTTTAATCACAATCTAACAGCGCCAGGTGCAATGTCTGGGGACCGGGATCATGCCAGGTaGCGGCATGTAGGGAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SKTHFNHNLTAPGAMSGDRDHAR*RHVGRL Trigger: CAGCCTCCCTACATGCCGCCACCTGGCATGATCCCG...GTCCCCAGACATTGCACCTGGCGCTGTTAGATTGTGATTAAAGTGAGTTTTTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | TCAAAAACTCACTTTAATCACAATCTAACAGCGCCAGGTGCAATGTCTGGGGACAAGGGAAGCCCTGCATaGAGCGCAGGGCATTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: SKTHFNHNLTAPGAMSGDKGSPA*SAGHWW Trigger: CCACCAATGCCCTGCGCTCCATGCAGGGCTTCCCTT...GTCCCCAGACATTGCACCTGGCGCTGTTAGATTGTGATTAAAGTGAGTTTTTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | ACCTCAAAAACTCACTTTAATCACAATCTAACAGCGCCAGGTGCAATGTCTGGGAAGGGAAGCCCTGCATaGAGCGCAGGGCATTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: TSKTHFNHNLTAPGAMSGKGSPA*SAGHWW Trigger: CCACCAATGCCCTGCGCTCCATGCAGGGCTTCCCTT...CCCAGACATTGCACCTGGCGCTGTTAGATTGTGATTAAAGTGAGTTTTTGAGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CCA 90 bp | TCAAAAACTCACTTTAATCACAATCTAACAGCGCCAGGTGCAATGTCTGGGGACGGAACAGGATGTGATTaGGTGGGTTCTCGGAGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: SKTHFNHNLTAPGAMSGDGTGCD*VGSRRE Trigger: CTCTCTCCGAGAACCCACCCAATCACATCCTGTTCC...GTCCCCAGACATTGCACCTGGCGCTGTTAGATTGTGATTAAAGTGAGTTTTTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS CCA 90 bp | CTGTCCTGGCATATGGTGCATGATGCGGGGTGCCTGAGGCATCGGTaGCATGCCCGGTACGGGCTGGACAGCCCCCACCACGGGCGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: LSWHMVHDAGCLRHR*HARYGLDSPHHGRS Trigger: GCTGCGCCCGTGGTGGGGGCTGTCCAGCCCGTACCGGGCATGCCACCGATGCCTCAGGCACCCCGCATCATGCACCATATGCCAGGACAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS GCA 90 bp | TGGCATGCCCGGTACGGGCTGGACAGCCCCCACCACGGGCGCAGCTaGCCCACCCTGAACAGCCTTTTTGGCAGCAGGTGTCTCCTGACT | + |
|
Preference number: 5 (lower is better) Translates to: WHARYGLDSPHHGRS*PTLNSLFGSRCLLT Trigger: AGTCAGGAGACACCTGCTGCCAAAAAGGCTGTTCAGGGTGGGGCAGCTGCGCCCGTGGTGGGGGCTGTCCAGCCCGTACCGGGCATGCCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS GCA 90 bp | CGGCATGTAGGGAGGCTGTCCTGGCATATGGTGCATGATGCGGGGTaGCTGAGGCATCGGTGGCATGCCCGGTACGGGCTGGACAGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: RHVGRLSWHMVHDAG*LRHRWHARYGLDSP Trigger: GGGGCTGTCCAGCCCGTACCGGGCATGCCACCGATGCCTCAGGCACCCCGCATCATGCACCATATGCCAGGACAGCCTCCCTACATGCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS TCA 90 bp | TGCCAGGTGGCGGCATGTAGGGAGGCTGTCCTGGCATATGGTGCATaGTGCGGGGTGCCTGAGGCATCGGTGGCATGCCCGGTACGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: CQVAACREAVLAYGA*CGVPEASVACPVRA Trigger: AGCCCGTACCGGGCATGCCACCGATGCCTCAGGCACCCCGCATCATGCACCATATGCCAGGACAGCCTCCCTACATGCCGCCACCTGGCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS CCA 90 bp | GGGGATCTGGCCAGGAGCGAGGCCTGGTGGCGGGATCATGCCAGGTaGCGGCATGTAGGGAGGCTGTCCTGGCATATGGTGCATGATGCG | + |
|
Preference number: 5 (lower is better) Translates to: GDLARSEAWWRDHAR*RHVGRLSWHMVHDA Trigger: CGCATCATGCACCATATGCCAGGACAGCCTCCCTACATGCCGCCACCTGGCATGATCCCGCCACCAGGCCTCGCTCCTGGCCAGATCCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS CCA 90 bp | TGGTGGCGGGATCATGCCAGGTGGCGGCATGTAGGGAGGCTGTCCTaGCATATGGTGCATGATGCGGGGTGCCTGAGGCATCGGTGGCAT | + |
|
Preference number: 5 (lower is better) Translates to: WWRDHARWRHVGRLS*HMVHDAGCLRHRWH Trigger: ATGCCACCGATGCCTCAGGCACCCCGCATCATGCACCATATGCCAGGACAGCCTCCCTACATGCCGCCACCTGGCATGATCCCGCCACCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | CACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGATGGAGCGCAGGGCATaGGTGGCGCTGGTGACCTCC | + |
|
Preference number: 5 (lower is better) Translates to: HGSEKVPKGDLPSGTEPRMERRA*VALVTS Trigger: GGAGGTCACCAGCGCCACCAATGCCCTGCGCTCCAT...CCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | GGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGATGGAGCGCAGGGCATaGGTGGCGCTGGTGACCTCC | + |
|
Preference number: 5 (lower is better) Translates to: GNHTHTALRRSLRGTYLQMERRA*VALVTS Trigger: GGAGGTCACCAGCGCCACCAATGCCCTGCGCTCCAT...CTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | CACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGCGCTGGTGACCTCCTaGAAGATGACGAAGGCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: HGSEKVPKGDLPSGTEPRALVTS*KMTKAW Trigger: CCAGGCCTTCGTCATCTTCAAGGAGGTCACCAGCGC...CCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | TGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTATGGAGCGCAGGGCATaGGTGGCGCTGGTGACCTCC | + |
|
Preference number: 5 (lower is better) Translates to: CGNHTHTALRRSLRGTYLMERRA*VALVTS Trigger: GGAGGTCACCAGCGCCACCAATGCCCTGCGCTCCAT...AAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | ACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAGCGCTGGTGACCTCCTaGAAGATGACGAAGGCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: THGSEKVPKGDLPSGTEPALVTS*KMTKAW Trigger: CCAGGCCTTCGTCATCTTCAAGGAGGTCACCAGCGC...TGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | CCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGAGCATGAGCTCGTaGGTCTCCTCAGGCAGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: PHTHGSEKVPKGDLPSGTESMSS*VSSGRL Trigger: CAACCTGCCTGAGGAGACCAACGAGCTCATGCTCTC...AGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | GGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGAGCCAGCCTGCACTTCATaGTCAAACTCCACGAAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: GSEKVPKGDLPSGTEPREPACTS*SNSTKA Trigger: CGCCTTCGTGGAGTTTGACAATGAAGTGCAGGCTGG...CTCCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | TGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTGAGAGCATGAGCTCGTaGGTCTCCTCAGGCAGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: CGNHTHTALRRSLRGTYLESMSS*VSSGRL Trigger: CAACCTGCCTGAGGAGACCAACGAGCTCATGCTCTC...AAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | ACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCACCAGCCTGCACTTCATaGTCAAACTCCACGAAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: THGSEKVPKGDLPSGTEPPACTS*SNSTKA Trigger: CGCCTTCGTGGAGTTTGACAATGAAGTGCAGGCTGG...TGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS CCA 90 bp | CCCCACCCTGAACAGCCTTTTTGGCAGCAGGTGTCTCCTGACTCTTaGGCTTCCTCTTCTCTCGTTTGCGATCTCTCTCCACATAGGTGC | + |
|
Preference number: 5 (lower is better) Translates to: PHPEQPFWQQVSPDS*ASSSLVCDLSPHRC Trigger: GCACCTATGTGGAGAGAGATCGCAAACGAGAGAAGAGGAAGCCCAAGAGTCAGGAGACACCTGCTGCCAAAAAGGCTGTTCAGGGTGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | GGACAGACTCTGGGTACAATGCTGTGTGGCAACCACACACACACGGCTCTGAGACCAGCCTGCACTTCATaGTCAAACTCCACGAAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: GQTLGTMLCGNHTHTALRPACTS*SNSTKA Trigger: CGCCTTCGTGGAGTTTGACAATGAAGTGCAGGCTGG...TCTCAGAGCCGTGTGTGTGTGGTTGCCACACAGCATTGTACCCAGAGTCTGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | ACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGGCATACAGGGACTTCTaGAGCTCATCCTTCTTGATC | + |
|
Preference number: 5 (lower is better) Translates to: TALRRSLRGTYLQGLSQGAYRDF*SSSFLI Trigger: GATCAAGAAGGATGAGCTCAAGAAGTCCCTGTATGC...CCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | GGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGAGGCATACAGGGACTTCTaGAGCTCATCCTTCTTGATC | + |
|
Preference number: 5 (lower is better) Translates to: GSEKVPKGDLPSGTEPREAYRDF*SSSFLI Trigger: GATCAAGAAGGATGAGCTCAAGAAGTCCCTGTATGC...CTCCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS TCA 90 bp | CTCGTTTGCGATCTCTCTCCACATAGGTGCCCTTCATCTTGGCAATaGTGTCCGAGTCAGTCTTTGCGTACTGGATGCGCATGGGCTTGT | + |
|
Preference number: 5 (lower is better) Translates to: LVCDLSPHRCPSSWQ*CPSQSLRTGCAWAC Trigger: ACAAGCCCATGCGCATCCAGTACGCAAAGACTGACTCGGACATCATTGCCAAGATGAAGGGCACCTATGTGGAGAGAGATCGCAAACGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | GGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGAGTTGAGCTCATCCTTCTaGATCTTCTCATTGAGATTG | + |
|
Preference number: 5 (lower is better) Translates to: GSEKVPKGDLPSGTEPRELSSSF*IFSLRL Trigger: CAATCTCAATGAGAAGATCAAGAAGGATGAGCTCAA...CTCCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | TCAAAAACTCACTTTAATCACAATCTAACAGCGCCAGGTGCAATGTCTGGGGACGCGCTGGTGACCTCCTaGAAGATGACGAAGGCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: SKTHFNHNLTAPGAMSGDALVTS*KMTKAW Trigger: CCAGGCCTTCGTCATCTTCAAGGAGGTCACCAGCGC...GTCCCCAGACATTGCACCTGGCGCTGTTAGATTGTGATTAAAGTGAGTTTTTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | GGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCAGGGACTGAGCCAAGGGAGCTTCATAGCATTGTTTaGTGTGATCTTAAAGCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: GSEKVPKGDLPSGTEPRELHSIV*CDLKAL Trigger: CAAGGCTTTAAGATCACACAAAACAATGCTATGAAG...CTCCCTTGGCTCAGTCCCTGAAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS CCA 90 bp | ATCTTCATGATCCGAGACACCAGGATATCCAGGATCTGGCCAAACTaGGAGAAGATGGCATACAGGGACTTCTTGAGCTCATCCTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: IFMIRDTRISRIWPN*EKMAYRDFLSSSFL Trigger: CAAGAAGGATGAGCTCAAGAAGTCCCTGTATGCCATCTTCTCCCAGTTTGGCCAGATCCTGGATATCCTGGTGTCTCGGATCATGAAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | TGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTTTGAGCTCATCCTTCTaGATCTTCTCATTGAGATTG | + |
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Preference number: 5 (lower is better) Translates to: CGNHTHTALRRSLRGTYLLSSSF*IFSLRL Trigger: CAATCTCAATGAGAAGATCAAGAAGGATGAGCTCAA...AAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | TGTGGCAACCACACACACACGGCTCTGAGAAGGTCCCTAAGGGGGACTTACCTTCTTCATAGCATTGTTTaGTGTGATCTTAAAGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: CGNHTHTALRRSLRGTYLLHSIV*CDLKAL Trigger: CAAGGCTTTAAGATCACACAAAACAATGCTATGAAG...AAGGTAAGTCCCCCTTAGGGACCTTCTCAGAGCCGTGTGTGTGTGGTTGCCACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | GGACAGACTCTGGGTACAATGCTGTGTGGCAACCACACACACACGGCTCTGAGACTTCATAGCATTGTTTaGTGTGATCTTAAAGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: GQTLGTMLCGNHTHTALRLHSIV*CDLKAL Trigger: CAAGGCTTTAAGATCACACAAAACAATGCTATGAAG...TCTCAGAGCCGTGTGTGTGTGGTTGCCACACAGCATTGTACCCAGAGTCTGTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS-3UTR CAA 90 bp | CATCTTGGCAATGATGTCCGAGTCAGTCTTTGCGTACTGGATGCGCATGGGCTTTCAACAGCATCCTTCTaGATCTTCTCATTGAGATTG | + |
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Preference number: 5 (lower is better) Translates to: HLGNDVRVSLCVLDAHGLSTASF*IFSLRL Trigger: CAATCTCAATGAGAAGATCAAGAAGGATGCTGTTGA...AAGCCCATGCGCATCCAGTACGCAAAGACTGACTCGGACATCATTGCCAAGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000141378.2 |
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| CDS-3UTR CAA 90 bp | ACCTCAAAAACTCACTTTAATCACAATCTAACAGCGCCAGGTGCAATGTCTGGGGCATACAGGGACTTCTaGAGCTCATCCTTCTTGATC | + |
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Preference number: 5 (lower is better) Translates to: TSKTHFNHNLTAPGAMSGAYRDF*SSSFLI Trigger: GATCAAGAAGGATGAGCTCAAGAAGTCCCTGTATGC...CCCAGACATTGCACCTGGCGCTGTTAGATTGTGATTAAAGTGAGTTTTTGAGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS GCA 72 bp | CGGTACGGGCTGGACAGCCCCCACCACGGGCGCAGCTaGCCCACCCTGAACAGCCTTTTTGGCAGCAGGTGT | + |
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Preference number: 6 (lower is better) Translates to: RYGLDSPHHGRS*PTLNSLFGSRC Trigger: ACACCTGCTGCCAAAAAGGCTGTTCAGGGTGGGGCAGCTGCGCCCGTGGTGGGGGCTGTCCAGCCCGTACCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS GCA 72 bp | GGATCTGGCCAGGAGCGAGGCCTGGTGGCGGGATCATaGCAGGTGGCGGCATGTAGGGAGGCTGTCCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: GSGQERGLVAGS*QVAACREAVLA Trigger: TGCCAGGACAGCCTCCCTACATGCCGCCACCTGGCATGATCCCGCCACCAGGCCTCGCTCCTGGCCAGATCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS CCA 72 bp | GCCAGGAGCGAGGCCTGGTGGCGGGATCATGCCAGGTaGCGGCATGTAGGGAGGCTGTCCTGGCATATGGTG | + |
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Preference number: 6 (lower is better) Translates to: ARSEAWWRDHAR*RHVGRLSWHMV Trigger: CACCATATGCCAGGACAGCCTCCCTACATGCCGCCACCTGGCATGATCCCGCCACCAGGCCTCGCTCCTGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS TCA 72 bp | GCGGCATGTAGGGAGGCTGTCCTGGCATATGGTGCATaGTGCGGGGTGCCTGAGGCATCGGTGGCATGCCCG | + |
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Preference number: 6 (lower is better) Translates to: AACREAVLAYGA*CGVPEASVACP Trigger: CGGGCATGCCACCGATGCCTCAGGCACCCCGCATCATGCACCATATGCCAGGACAGCCTCCCTACATGCCGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS CCA 72 bp | CCACGGGCGCAGCTGCCCCACCCTGAACAGCCTTTTTaGCAGCAGGTGTCTCCTGACTCTTGGGCTTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: PRAQLPHPEQPF*QQVSPDSWASS Trigger: AGAGGAAGCCCAAGAGTCAGGAGACACCTGCTGCCAAAAAGGCTGTTCAGGGTGGGGCAGCTGCGCCCGTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS CCA 72 bp | GATCATGCCAGGTGGCGGCATGTAGGGAGGCTGTCCTaGCATATGGTGCATGATGCGGGGTGCCTGAGGCAT | + |
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Preference number: 6 (lower is better) Translates to: DHARWRHVGRLS*HMVHDAGCLRH Trigger: ATGCCTCAGGCACCCCGCATCATGCACCATATGCCAGGACAGCCTCCCTACATGCCGCCACCTGGCATGATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS CCA 72 bp | CTCAGGCAGGTTGGTGAGGAACAGGATGTGATTGGGTaGGTTCTCGGAGAGAGGCTGGGCAGGCGGCATCTG | + |
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Preference number: 6 (lower is better) Translates to: LRQVGEEQDVIG*VLGERLGRRHL Trigger: CAGATGCCGCCTGCCCAGCCTCTCTCCGAGAACCCACCCAATCACATCCTGTTCCTCACCAACCTGCCTGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS CAA 72 bp | TGCAGGGCATCTCGTGCTGCCCCAGCCTGCACTTCATaGTCAAACTCCACGAAGGCGATGTCATGGCGCCCA | + |
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Preference number: 6 (lower is better) Translates to: CRASRAAPACTS*SNSTKAMSWRP Trigger: TGGGCGCCATGACATCGCCTTCGTGGAGTTTGACAATGAAGTGCAGGCTGGGGCAGCACGAGATGCCCTGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS CAA 90 bp | TTAAAGCCTTGCAGGGCATCTCGTGCTGCCCCAGCCTGCACTTCATaGTCAAACTCCACGAAGGCGATGTCATGGCGCCCAGGGACCAGA | + |
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Preference number: 6 (lower is better) Translates to: LKPCRASRAAPACTS*SNSTKAMSWRPGTR Trigger: TCTGGTCCCTGGGCGCCATGACATCGCCTTCGTGGAGTTTGACAATGAAGTGCAGGCTGGGGCAGCACGAGATGCCCTGCAAGGCTTTAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000163311.9 |
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| CDS TCA 72 bp | GATCTCTCTCCACATAGGTGCCCTTCATCTTGGCAATaGTGTCCGAGTCAGTCTTTGCGTACTGGATGCGCA | + |
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Preference number: 6 (lower is better) Translates to: DLSPHRCPSSWQ*CPSQSLRTGCA Trigger: TGCGCATCCAGTACGCAAAGACTGACTCGGACATCATTGCCAAGATGAAGGGCACCTATGTGGAGAGAGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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| CDS CCA 72 bp | ATCCGAGACACCAGGATATCCAGGATCTGGCCAAACTaGGAGAAGATGGCATACAGGGACTTCTTGAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: IRDTRISRIWPN*EKMAYRDFLSS Trigger: TGAGCTCAAGAAGTCCCTGTATGCCATCTTCTCCCAGTTTGGCCAGATCCTGGATATCCTGGTGTCTCGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000080356.10 ENSMUST00000122202.8 ENSMUST00000126211.2 ENSMUST00000163311.9 |
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