Pregenerated sensors for SNRNP48 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021431Ensembl transcript IDs: ENSMUST00000091641.13, ENSMUST00000178564.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | GCCAGGACACTCCCCATTCAGAAAGTCACTCAAGAGTaGTTTCCCTGTCACATACAACCCTCCAATGAAGTG | + |
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Preference number: 3 (lower is better) Translates to: ARTLPIQKVTQE*FPCHIQPSNEV Trigger: CACTTCATTGGAGGGTTGTATGTGACAGGGAAAGCACTCTTGAGTGACTTTCTGAATGGGGAGTGTCCTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR TCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTTCCCCGGGGTCCAGCTaGTCCAGGCTCCATCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGSPGSS*SRLHPR Trigger: CCTGGGATGGAGCCTGGATCAGCTGGACCCCGGGGA...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR CCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTTCGCTCAGCTCCTCCTaGAGCCGACGCCGCTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGSLSSS*SRRRSS Trigger: GGAAGAGCGGCGTCGGCTCCAGGAGGAGCTGAGCGA...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR GCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTCTCCCCTGCTCTTCCTaGCAGTGGCTGCTCAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGLPCSS*QWLLSS Trigger: GGAGCTGAGCAGCCACTGGCAGGAAGAGCAGGGGAG...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR GCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTTCTCCTGCTCTCCCCTaGTCTTCCTGCCAGTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGSPALP*SSCQWL Trigger: CAGCCACTGGCAGGAAGAGCAGGGGAGAGCAGGAGA...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR GCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTCTCAGCAGCGTCTCCTaGTCTCCCCTGCTCTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGLSSVS*SPLLFL Trigger: CAGGAAGAGCAGGGGAGAGCAGGAGACGCTGCTGAG...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR TCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTCCTCCATGTGCACCTTaGTCACATCCCGGATCACCT | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGPPCAP*SHPGSP Trigger: AGGTGATCCGGGATGTGATCAAGGTGCACATGGAGG...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR GCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTCTCAGCTCCTCCATGTaGACCTTGATCACATCCCGG | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGLSSSM*TLITSR Trigger: CCGGGATGTGATCAAGGTGCACATGGAGGAGCTGAG...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR TCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTCACTGTCATTTTCAATaGCTTGAGGACCAGAGCGCT | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGHCHFQ*LEDQSA Trigger: AGCGCTCTGGTCCTCAAGTCATTGAAAATGACAGTG...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR TCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTTCATTTTCAATGACTTaGGGACCAGAGCGCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGSFSMT*GPERFF Trigger: GAAAAAGCGCTCTGGTCCTCAAGTCATTGAAAATGA...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR TCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTCAAACAGATCGTTTGTaGTTCAGAGGAACTTCAACA | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGQTDRL*FRGTST Trigger: TGTTGAAGTTCCTCTGAATCACAAACGATCTGTTTG...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR TCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTTCTTTGTCTCCTCAATaGCAAAATCATACAGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGSLSPQ*QNHTGQ Trigger: TTGCCCTGTATGATTTTGTCATTGAGGAGACAAAGA...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR TCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTGATCACCTCAGTGTATaGTTTCTTGGTTATGTGAAC | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGDHLSV*FLGYVN Trigger: GTTCACATAACCAAGAAATCATACACTGAGGTGATC...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR TCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTAGCCCTTCTATGTCGTaGACTTTCAACATCCAAATA | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGSPSMS*TFNIQI Trigger: TATTTGGATGTTGAAAGTTCACGACATAGAAGGGCT...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR GCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTGTGATGATTTGGGCATaGGATGATTGGAATCATAAG | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGVMIWA*DDWNHK Trigger: CTTATGATTCCAATCATCGCATGCCCAAATCATCAC...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR CCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTTTGTTAGTGATGATTTaGGCATGCGATGATTGGAAT | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGLLVMI*ACDDWN Trigger: ATTCCAATCATCGCATGCCCAAATCATCACTAACAA...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR CCA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTTTCCAGGTAAGATTTTaGACTTTTTCGGCTATTATC | + |
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Preference number: 4 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGFQVRF*TFSAII Trigger: GATAATAGCCGAAAAAGTCCAAAATCTTACCTGGAA...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| 3UTR CAA 72 bp | AAACATGATATATTACTTACAGAACCAAAGTTTCCTTaGACCAACCCCCTAACCCTGTTATGTACCCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: KHDILLTEPKFP*TNPLTLLCTPK Trigger: TTTTGGGGTACATAACAGGGTTAGGGGGTTGGTCAAAGGAAACTTTGGTTCTGTAAGTAATATATCATGTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS CCA 90 bp | TTAGTGATGATTTGGGCATGCGATGATTGGAATCATAAGGACATATaGCGATTTCATCCTCGGCCTCCGCCTCGTCCCCGGGGTCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: LVMIWACDDWNHKDI*RFHPRPPPRPRGPA Trigger: AGCTGGACCCCGGGGACGAGGCGGAGGCCGAGGATGAAATCGCCATATGTCCTTATGATTCCAATCATCGCATGCCCAAATCATCACTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS-3UTR CAA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTTCCTCCATGTGCACCTaGATCACATCCCGGATCACC | + |
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Preference number: 5 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGSSMCT*ITSRIT Trigger: GGTGATCCGGGATGTGATCAAGGTGCACATGGAGGA...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR CAA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTTCATTCTCTTCCTCTTaGGTATATCCCAGTTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGSFSSS*VYPSFL Trigger: GAGGAAACTGGGATATACCAAAGAGGAAGAGAATGA...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS-3UTR CAA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTGTCATTTTCAATGACTaGAGGACCAGAGCGCTTTTT | + |
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Preference number: 5 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGVIFND*RTRALF Trigger: AAAAAGCGCTCTGGTCCTCAAGTCATTGAAAATGAC...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS TCA 90 bp | AGGGCAAGGCGATCCGTTTGTGTGAGGTCACAAACAGATCGTTTGTaGTTCAGAGGAACTTCAACAGGCACTGAAGAATACATTCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: RARRSVCVRSQTDRL*FRGTSTGTEEYILW Trigger: CCAGAGAATGTATTCTTCAGTGCCTGTTGAAGTTCCTCTGAATCACAAACGATCTGTTTGTGACCTCACACAAACGGATCGCCTTGCCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS-3UTR CAA 90 bp | CCCTGTCACATACAACCCTCCAATGAAGTGAGAAAGAGCAGTCACTGCCAGGGTAGCTGTAGTCCTAGCTaGTTTAATTATCTGGAACTG | + |
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Preference number: 5 (lower is better) Translates to: PCHIQPSNEVRKSSHCQGSCSPS*FNYLEL Trigger: CAGTTCCAGATAATTAAACAAGCTAGGACTACAGCT...ACCCTGGCAGTGACTGCTCTTTCTCACTTCATTGGAGGGTTGTATGTGACAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS CCA 90 bp | AAGATTCCATGTGCTTTGTTAGTGATGATTTGGGCATGCGATGATTaGAATCATAAGGACATATGGCGATTTCATCCTCGGCCTCCGCCT | + |
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Preference number: 5 (lower is better) Translates to: KIPCALLVMIWACDD*NHKDIWRFHPRPPP Trigger: AGGCGGAGGCCGAGGATGAAATCGCCATATGTCCTTATGATTCCAATCATCGCATGCCCAAATCATCACTAACAAAGCACATGGAATCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS TCA 90 bp | GTCACAAACAGATCGTTTGTGATTCAGAGGAACTTCAACAGGCACTaGAGAATACATTCTCTGGCTATAACAATCACCATCTTTCCCAGC | + |
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Preference number: 5 (lower is better) Translates to: VTNRSFVIQRNFNRH*RIHSLAITITIFPS Trigger: GCTGGGAAAGATGGTGATTGTTATAGCCAGAGAATGTATTCTTCAGTGCCTGTTGAAGTTCCTCTGAATCACAAACGATCTGTTTGTGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS GCA 90 bp | TCAATCTGCAAGATTCCATGTGCTTTGTTAGTGATGATTTGGGCATaGGATGATTGGAATCATAAGGACATATGGCGATTTCATCCTCGG | + |
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Preference number: 5 (lower is better) Translates to: SICKIPCALLVMIWA*DDWNHKDIWRFHPR Trigger: CCGAGGATGAAATCGCCATATGTCCTTATGATTCCAATCATCGCATGCCCAAATCATCACTAACAAAGCACATGGAATCTTGCAGATTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS CCA 90 bp | GTTTCCTCAATCTGCAAGATTCCATGTGCTTTGTTAGTGATGATTTaGGCATGCGATGATTGGAATCATAAGGACATATGGCGATTTCAT | + |
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Preference number: 5 (lower is better) Translates to: VSSICKIPCALLVMI*ACDDWNHKDIWRFH Trigger: ATGAAATCGCCATATGTCCTTATGATTCCAATCATCGCATGCCCAAATCATCACTAACAAAGCACATGGAATCTTGCAGATTGAGGAAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS CCA 90 bp | CAATCACCATCTTTCCCAGCTGTAGTCCTAGCTTGTTTAATTATCTaGAACTGTGAATCCTTATTCAAAGTAACTGAAGGAATCTTCAAA | + |
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Preference number: 5 (lower is better) Translates to: QSPSFPAVVLACLII*NCESLFKVTEGIFK Trigger: TTTGAAGATTCCTTCAGTTACTTTGAATAAGGATTCACAGTTCCAGATAATTAAACAAGCTAGGACTACAGCTGGGAAAGATGGTGATTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS CCA 72 bp | CGGCAGCAGCTCTCCACAAACTCGCTCAGCTCCTCCTaGAGCCGACGCCGCTCTTCCAGAGGAGGAGGTTCG | + |
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Preference number: 6 (lower is better) Translates to: RQQLSTNSLSSS*SRRRSSRGGGS Trigger: CGAACCTCCTCCTCTGGAAGAGCGGCGTCGGCTCCAGGAGGAGCTGAGCGAGTTTGTGGAGAGCTGCTGCCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS CAA 90 bp | CCCTGCTCTTCCTGCCAGTGGCTGCTCAGCTCCTCCATGTGCACCTaGATCACATCCCGGATCACCCTAACATGCTTTGTCTCCTCAATG | + |
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Preference number: 6 (lower is better) Translates to: PCSSCQWLLSSSMCT*ITSRITLTCFVSSM Trigger: CATTGAGGAGACAAAGCATGTTAGGGTGATCCGGGATGTGATCAAGGTGCACATGGAGGAGCTGAGCAGCCACTGGCAGGAAGAGCAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178564.2 |
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| CDS CCA 72 bp | ATTTGGGCATGCGATGATTGGAATCATAAGGACATATaGCGATTTCATCCTCGGCCTCCGCCTCGTCCCCGG | + |
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Preference number: 6 (lower is better) Translates to: IWACDDWNHKDI*RFHPRPPPRPR Trigger: CCGGGGACGAGGCGGAGGCCGAGGATGAAATCGCCATATGTCCTTATGATTCCAATCATCGCATGCCCAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS TCA 72 bp | CTTGAGGACCAGAGCGCTTTTTCTTTGTCTCCTCAATaGCAAAATCATACAGGGCAAGGCGATCCGTTTGTG | + |
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Preference number: 6 (lower is better) Translates to: LEDQSAFSLSPQ*QNHTGQGDPFV Trigger: CACAAACGGATCGCCTTGCCCTGTATGATTTTGTCATTGAGGAGACAAAGAAAAAGCGCTCTGGTCCTCAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS GCA 72 bp | ATGTGCACCTTGATCACATCCCGGATCACCCTAACATaGTTTGTCTCCTCAATGACAAAATCATACAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: MCTLITSRITLT*FVSSMTKSYRA Trigger: TGCCCTGTATGATTTTGTCATTGAGGAGACAAAGCATGTTAGGGTGATCCGGGATGTGATCAAGGTGCACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178564.2 |
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| CDS CAA 90 bp | CTTTGTCTCCTCAATGACAAAATCATACAGGGCAAGGCGATCCGTTaGTGTGAGGTCACAAACAGATCGTTTGTGATTCAGAGGAACTTC | + |
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Preference number: 6 (lower is better) Translates to: LCLLNDKIIQGKAIR*CEVTNRSFVIQRNF Trigger: GAAGTTCCTCTGAATCACAAACGATCTGTTTGTGACCTCACACAAACGGATCGCCTTGCCCTGTATGATTTTGTCATTGAGGAGACAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS TCA 72 bp | CGATCCGTTTGTGTGAGGTCACAAACAGATCGTTTGTaGTTCAGAGGAACTTCAACAGGCACTGAAGAATAC | + |
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Preference number: 6 (lower is better) Translates to: RSVCVRSQTDRL*FRGTSTGTEEY Trigger: GTATTCTTCAGTGCCTGTTGAAGTTCCTCTGAATCACAAACGATCTGTTTGTGACCTCACACAAACGGATCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS TCA 72 bp | CAGCCAAGTCTACAAACAGGTCACTGTCATTTTCAATaGCTTGAGGACCAGAGCGCTTTTTCTTTGTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: QPSLQTGHCHFQ*LEDQSAFSLSP Trigger: AGGAGACAAAGAAAAAGCGCTCTGGTCCTCAAGTCATTGAAAATGACAGTGACCTGTTTGTAGACTTGGCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS CAA 72 bp | CTCAATGACAAAATCATACAGGGCAAGGCGATCCGTTaGTGTGAGGTCACAAACAGATCGTTTGTGATTCAG | + |
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Preference number: 6 (lower is better) Translates to: LNDKIIQGKAIR*CEVTNRSFVIQ Trigger: CTGAATCACAAACGATCTGTTTGTGACCTCACACAAACGGATCGCCTTGCCCTGTATGATTTTGTCATTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS TCA 72 bp | GTGCACCTTGATCACATCCCGGATCACCTCAGTGTATaGTTTCTTGGTTATGTGAACATTCTTAGCTCTGTA | + |
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Preference number: 6 (lower is better) Translates to: VHLDHIPDHLSV*FLGYVNILSSV Trigger: TACAGAGCTAAGAATGTTCACATAACCAAGAAATCATACACTGAGGTGATCCGGGATGTGATCAAGGTGCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091641.13 |
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| CDS CAA 72 bp | ATCCCAGTTTCCTCAATCTGCAAGATTCCATGTGCTTaGTTAGTGATGATTTGGGCATGCGATGATTGGAAT | + |
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Preference number: 6 (lower is better) Translates to: IPVSSICKIPCA*LVMIWACDDWN Trigger: ATTCCAATCATCGCATGCCCAAATCATCACTAACAAAGCACATGGAATCTTGCAGATTGAGGAAACTGGGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS CAA 90 bp | CTTTGGTATATCCCAGTTTCCTCAATCTGCAAGATTCCATGTGCTTaGTTAGTGATGATTTGGGCATGCGATGATTGGAATCATAAGGAC | + |
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Preference number: 6 (lower is better) Translates to: LWYIPVSSICKIPCA*LVMIWACDDWNHKD Trigger: GTCCTTATGATTCCAATCATCGCATGCCCAAATCATCACTAACAAAGCACATGGAATCTTGCAGATTGAGGAAACTGGGATATACCAAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS CCA 72 bp | ATCTGCAAGATTCCATGTGCTTTGTTAGTGATGATTTaGGCATGCGATGATTGGAATCATAAGGACATATGG | + |
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Preference number: 6 (lower is better) Translates to: ICKIPCALLVMI*ACDDWNHKDIW Trigger: CCATATGTCCTTATGATTCCAATCATCGCATGCCCAAATCATCACTAACAAAGCACATGGAATCTTGCAGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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| CDS GCA 72 bp | AAGATTCCATGTGCTTTGTTAGTGATGATTTGGGCATaGGATGATTGGAATCATAAGGACATATGGCGATTT | + |
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Preference number: 6 (lower is better) Translates to: KIPCALLVMIWA*DDWNHKDIWRF Trigger: AAATCGCCATATGTCCTTATGATTCCAATCATCGCATGCCCAAATCATCACTAACAAAGCACATGGAATCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091641.13 ENSMUST00000178564.2 |
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