Pregenerated sensors for SNRNP40 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074088Ensembl transcript IDs: ENSMUST00000105994.4
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AATGATGGTCATCTGAGGCAGGTCAGCCCAGACACCATCGGACTCTaGCCAATTCCGCAGTCTGAGCCTCAGGGCTGGGAGCCGGGAGCC | + |
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Preference number: 1 (lower is better) Translates to: NDGHLRQVSPDTIGL*PIPQSEPQGWEPGA Trigger: GGCTCCCGGCTCCCAGCCCTGAGGCTCAGACTGCGGAATTGGCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATGACCATCATT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| 3UTR TCA 90 bp | TCCCTGAAATCTGGCAGGCGGTACCAGAGGCCACAGTTGTTCTGGTaGGTGTGGTACAAGTGGTTGCTGGAATACGGCCATCACCTCCAG | + |
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Preference number: 1 (lower is better) Translates to: SLKSGRRYQRPQLFW*VWYKWLLEYGHHLQ Trigger: CTGGAGGTGATGGCCGTATTCCAGCAACCACTTGTACCACACTCACCAGAACAACTGTGGCCTCTGGTACCGCCTGCCAGATTTCAGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| 3UTR CCA 90 bp | GAAGGAATCTTATTTTTCAAAGAGAAGAAAGCAATCCCTGAAATCTaGCAGGCGGTACCAGAGGCCACAGTTGTTCTGGTGAGTGTGGTA | + |
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Preference number: 1 (lower is better) Translates to: EGILFFKEKKAIPEI*QAVPEATVVLVSVV Trigger: TACCACACTCACCAGAACAACTGTGGCCTCTGGTACCGCCTGCCAGATTTCAGGGATTGCTTTCTTCTCTTTGAAAAATAAGATTCCTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| 3UTR-3UTR CCA 90 bp | AAAGAGAAGAAAGCAATCCCTGAAATCTGGCAGGCGGTACCAGAGGCCACAGTTTCTGAGCCTCAGGGCTaGGAGCCGGGAGCCTTCCAT | + |
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Preference number: 2 (lower is better) Translates to: KEKKAIPEIWQAVPEATVSEPQG*EPGAFH Trigger: ATGGAAGGCTCCCGGCTCCCAGCCCTGAGGCTCAGA...AACTGTGGCCTCTGGTACCGCCTGCCAGATTTCAGGGATTGCTTTCTTCTCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| 3UTR-3UTR TCA 90 bp | TATTTTTCAAAGAGAAGAAAGCAATCCCTGAAATCTGGCAGGCGGTACCAGAGGGCCAATTCCGCAGTCTaGGCCTCAGGGCTGGGAGCC | + |
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Preference number: 2 (lower is better) Translates to: YFSKRRKQSLKSGRRYQRANSAV*ASGLGA Trigger: GGCTCCCAGCCCTGAGGCTCAGACTGCGGAATTGGC...CCTCTGGTACCGCCTGCCAGATTTCAGGGATTGCTTTCTTCTCTTTGAAAAATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| 3UTR TCA 72 bp | CCCAGACACCATCGGACTCTGGCCAATTCCGCAGTCTaGGCCTCAGGGCTGGGAGCCGGGAGCCTTCCATTC | + |
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Preference number: 3 (lower is better) Translates to: PRHHRTLANSAV*ASGLGAGSLPF Trigger: GAATGGAAGGCTCCCGGCTCCCAGCCCTGAGGCTCAGACTGCGGAATTGGCCAGAGTCCGATGGTGTCTGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| 3UTR CCA 72 bp | CATCTGAGGCAGGTCAGCCCAGACACCATCGGACTCTaGCCAATTCCGCAGTCTGAGCCTCAGGGCTGGGAG | + |
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Preference number: 3 (lower is better) Translates to: HLRQVSPDTIGL*PIPQSEPQGWE Trigger: CTCCCAGCCCTGAGGCTCAGACTGCGGAATTGGCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| 3UTR TCA 72 bp | GCCATCACCTCCAGCTGCTTGCTAATGATGGTCATCTaGGGCAGGTCAGCCCAGACACCATCGGACTCTGGC | + |
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Preference number: 3 (lower is better) Translates to: AITSSCLLMMVI*GRSAQTPSDSG Trigger: GCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATGACCATCATTAGCAAGCAGCTGGAGGTGATGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR GCA 90 bp | GATGGTCATCTGAGGCAGGTCAGCCCAGACACCATCGGACTCTGGCCAATTCCGTCCCGCCTGCAGCAATaGCCCTGGAGTCGCCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: DGHLRQVSPDTIGLWPIPSRLQQ*PWSRLL Trigger: CAGCAGGCGACTCCAGGGGCATTGCTGCAGGCGGGA...CGGAATTGGCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATGACCATC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR TCA 90 bp | GACACCATCGGACTCTGGCCAATTCCGCAGTCTGAGCCTCAGGGCTGGGAGCCGCTTGTCACTGGATGCTaGGAGGATGATGGGCTCGTC | + |
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Preference number: 4 (lower is better) Translates to: DTIGLWPIPQSEPQGWEPLVTGC*EDDGLV Trigger: GACGAGCCCATCATCCTCTCAGCATCCAGTGACAAG...CGGCTCCCAGCCCTGAGGCTCAGACTGCGGAATTGGCCAGAGTCCGATGGTGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR CCA 90 bp | ACACCATCGGACTCTGGCCAATTCCGCAGTCTGAGCCTCAGGGCTGGGAGCCGGCCAGGGTGGATCCATTaGGGTGAAACTTGCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: TPSDSGQFRSLSLRAGSRPGWIH*GETCSS Trigger: ACTGCTGCAAGTTTCACCCCAATGGATCCACCCTGG...CCGGCTCCCAGCCCTGAGGCTCAGACTGCGGAATTGGCCAGAGTCCGATGGTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR TCA 90 bp | ATCCCTGAAATCTGGCAGGCGGTACCAGAGGCCACAGTTGTTCTGGTGAGTGTGGGAAAGCCACTTCATTaGTGGAGCCAGCGTGACCAG | + |
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Preference number: 4 (lower is better) Translates to: IPEIWQAVPEATVVLVSVGKPLH*WSQRDQ Trigger: CTGGTCACGCTGGCTCCATCAATGAAGTGGCTTTCC...CACACTCACCAGAACAACTGTGGCCTCTGGTACCGCCTGCCAGATTTCAGGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR GCA 90 bp | GCTAATGATGGTCATCTGAGGCAGGTCAGCCCAGACACCATCGGACTCTGGCCAGTGCAGCTCCATCACTaGTCCACTGTGTCCCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: ANDGHLRQVSPDTIGLWPVQLHH*STVSLQ Trigger: TTGAAGGGACACAGTGGAGCAGTGATGGAGCTGCAC...TGGCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATGACCATCATTAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR GCA 90 bp | GCTAATGATGGTCATCTGAGGCAGGTCAGCCCAGACACCATCGGACTCTGGCCAAGCCAGCTGCTATCTTaGTTCCATCTGGAGACCAGG | + |
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Preference number: 4 (lower is better) Translates to: ANDGHLRQVSPDTIGLWPSQLLS*FHLETR Trigger: CCTGGTCTCCAGATGGAAGCAAGATAGCAGCTGGCT...TGGCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATGACCATCATTAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR CCA 90 bp | AAAGAGAAGAAAGCAATCCCTGAAATCTGGCAGGCGGTACCAGAGGCCACAGTTGTTGGGGGCCCCGCCTaGCTGGGTAACAGGAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: KEKKAIPEIWQAVPEATVVGGPA*LGNRSS Trigger: TGAACTCCTGTTACCCAGCCAGGCGGGGCCCCCAAC...AACTGTGGCCTCTGGTACCGCCTGCCAGATTTCAGGGATTGCTTTCTTCTCTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR TCA 90 bp | GCTAATGATGGTCATCTGAGGCAGGTCAGCCCAGACACCATCGGACTCTGGCCAACCTGGTACGTGTTCTaGAATGTCTGGACAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: ANDGHLRQVSPDTIGLWPTWYVF*NVWTAA Trigger: AGCAGCTGTCCAGACATTTCAGAACACGTACCAGGT...TGGCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATGACCATCATTAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR GCA 90 bp | GCTAATGATGGTCATCTGAGGCAGGTCAGCCCAGACACCATCGGACTCTGGCCACTGTACCATCGTCACTaGCAGTACAGACAAGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: ANDGHLRQVSPDTIGLWPLYHRH*QYRQVG Trigger: CCCAACTTGTCTGTACTGGCAGTGACGATGGTACAG...TGGCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATGACCATCATTAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR GCA 90 bp | GCTAATGATGGTCATCTGAGGCAGGTCAGCCCAGACACCATCGGACTCTGGCCAGCCAGTTACAGAGTCTaGATGGCCTCTCATGGTGTA | + |
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Preference number: 4 (lower is better) Translates to: ANDGHLRQVSPDTIGLWPASYRV*MASHGV Trigger: TACACCATGAGAGGCCATGCAGACTCTGTAACTGGC...TGGCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATGACCATCATTAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR GCA 90 bp | TCATCTGAGGCAGGTCAGCCCAGACACCATCGGACTCTGGCCAATTCCGCAGTCCTGAGAAGAGCATGCTaGCATCTGTGTTATAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: SSEAGQPRHHRTLANSAVLRRAC*HLCYSA Trigger: TGCACTATAACACAGATGGCAGCATGCTCTTCTCAG...GACTGCGGAATTGGCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR GCA 90 bp | TTGCTGGAATACGGCCATCACCTCCAGCTGCTTGCTAATGATGGTCATCTGAGGACGCTGAGAAGAGCATaGTGCCATCTGTGTTATAGT | + |
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Preference number: 4 (lower is better) Translates to: LLEYGHHLQLLANDGHLRTLRRA*CHLCYS Trigger: ACTATAACACAGATGGCAGCATGCTCTTCTCAGCGT...CCTCAGATGACCATCATTAGCAAGCAGCTGGAGGTGATGGCCGTATTCCAGCAA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR GCA 90 bp | AAAGAGAAGAAAGCAATCCCTGAAATCTGGCAGGCGGTACCAGAGGCCACAGTTAAATGTCTGGACAGCTaGTTTCTTCCGGATGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: KEKKAIPEIWQAVPEATVKCLDS*FLPDVP Trigger: TGGGACATCCGGAAGAAAGCAGCTGTCCAGACATTT...AACTGTGGCCTCTGGTACCGCCTGCCAGATTTCAGGGATTGCTTTCTTCTCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR TCA 90 bp | TATTTTTCAAAGAGAAGAAAGCAATCCCTGAAATCTGGCAGGCGGTACCAGAGGGATCGCTCGTGTCATTaGAGGTCACAGCCAACACCT | + |
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Preference number: 4 (lower is better) Translates to: YFSKRRKQSLKSGRRYQRDRSCH*RSQPTP Trigger: AGGTGTTGGCTGTGACCTTCAATGACACGAGCGATC...CCTCTGGTACCGCCTGCCAGATTTCAGGGATTGCTTTCTTCTCTTTGAAAAATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR TCA 90 bp | AAAGAGAAGAAAGCAATCCCTGAAATCTGGCAGGCGGTACCAGAGGCCACAGTTGTAGGTCCCAGACCTTaGTGTCATTATCTATTCCAC | + |
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Preference number: 4 (lower is better) Translates to: KEKKAIPEIWQAVPEATVVGPRP*CHYLFH Trigger: GTGGAATAGATAATGACATCAAGGTCTGGGACCTAC...AACTGTGGCCTCTGGTACCGCCTGCCAGATTTCAGGGATTGCTTTCTTCTCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR CCA 90 bp | TATTTTTCAAAGAGAAGAAAGCAATCCCTGAAATCTGGCAGGCGGTACCAGAGGTCACACATCTCTCTTTaGGAGCAAATGGCCGGACAT | + |
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Preference number: 4 (lower is better) Translates to: YFSKRRKQSLKSGRRYQRSHISL*EQMAGH Trigger: ATGTCCGGCCATTTGCTCCCAAAGAGAGATGTGTGA...CCTCTGGTACCGCCTGCCAGATTTCAGGGATTGCTTTCTTCTCTTTGAAAAATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR TCA 90 bp | TATTTTTCAAAGAGAAGAAAGCAATCCCTGAAATCTGGCAGGCGGTACCAGAGGTTGTGGACATTTCCTTaGAATATCTTCACACATCTC | + |
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Preference number: 4 (lower is better) Translates to: YFSKRRKQSLKSGRRYQRLWTFP*NIFTHL Trigger: GAGATGTGTGAAGATATTTCAAGGAAATGTCCACAA...CCTCTGGTACCGCCTGCCAGATTTCAGGGATTGCTTTCTTCTCTTTGAAAAATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS CCA 90 bp | TGGAGCCAGCGTGACCAGGCAGCTTGTACAGGACCCTTCGGCTTGTaGTGTCCCACACGTACACAAACCTGTCTGCTGAGCCAGCTGCTA | + |
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Preference number: 5 (lower is better) Translates to: WSQRDQAACTGPFGL*CPTRTQTCLLSQLL Trigger: TAGCAGCTGGCTCAGCAGACAGGTTTGTGTACGTGTGGGACACCACAAGCCGAAGGGTCCTGTACAAGCTGCCTGGTCACGCTGGCTCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR CAA 90 bp | ACACCATCGGACTCTGGCCAATTCCGCAGTCTGAGCCTCAGGGCTGGGAGCCGGCAGACACGAACTGTGTaGTCCATTGCATTGGACAGG | + |
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Preference number: 5 (lower is better) Translates to: TPSDSGQFRSLSLRAGSRQTRTV*SIALDR Trigger: CCTGTCCAATGCAATGGACAACACAGTTCGTGTCTG...CCGGCTCCCAGCCCTGAGGCTCAGACTGCGGAATTGGCCAGAGTCCGATGGTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR CAA 90 bp | GCTAATGATGGTCATCTGAGGCAGGTCAGCCCAGACACCATCGGACTCTGGCCAGAGCCAGCTGCTATCTaGCTTCCATCTGGAGACCAG | + |
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Preference number: 5 (lower is better) Translates to: ANDGHLRQVSPDTIGLWPEPAAI*LPSGDQ Trigger: CTGGTCTCCAGATGGAAGCAAGATAGCAGCTGGCTC...TGGCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATGACCATCATTAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR CAA 90 bp | GCTAATGATGGTCATCTGAGGCAGGTCAGCCCAGACACCATCGGACTCTGGCCACGTAGGTCCCAGACCTaGATGTCATTATCTATTCCA | + |
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Preference number: 5 (lower is better) Translates to: ANDGHLRQVSPDTIGLWPRRSQT*MSLSIP Trigger: TGGAATAGATAATGACATCAAGGTCTGGGACCTACG...TGGCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATGACCATCATTAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR CAA 90 bp | GCTAATGATGGTCATCTGAGGCAGGTCAGCCCAGACACCATCGGACTCTGGCCAGAACTGTGTTGTCCATaGCATTGGACAGGAGATAAG | + |
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Preference number: 5 (lower is better) Translates to: ANDGHLRQVSPDTIGLWPELCCP*HWTGDK Trigger: CTTATCTCCTGTCCAATGCAATGGACAACACAGTTC...TGGCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATGACCATCATTAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS-3UTR CAA 90 bp | GCTAATGATGGTCATCTGAGGCAGGTCAGCCCAGACACCATCGGACTCTGGCCAGTTGTGGACATTTCCTaGAAATATCTTCACACATCT | + |
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Preference number: 5 (lower is better) Translates to: ANDGHLRQVSPDTIGLWPVVDIS*KYLHTS Trigger: AGATGTGTGAAGATATTTCAAGGAAATGTCCACAAC...TGGCCAGAGTCCGATGGTGTCTGGGCTGACCTGCCTCAGATGACCATCATTAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS CCA 72 bp | CGTGACCAGGCAGCTTGTACAGGACCCTTCGGCTTGTaGTGTCCCACACGTACACAAACCTGTCTGCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: RDQAACTGPFGL*CPTRTQTCLLS Trigger: GCTCAGCAGACAGGTTTGTGTACGTGTGGGACACCACAAGCCGAAGGGTCCTGTACAAGCTGCCTGGTCACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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| CDS CAA 72 bp | CAGCGTGACCAGGCAGCTTGTACAGGACCCTTCGGCTaGTGGTGTCCCACACGTACACAAACCTGTCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: QRDQAACTGPFG*WCPTRTQTCLL Trigger: CAGCAGACAGGTTTGTGTACGTGTGGGACACCACAAGCCGAAGGGTCCTGTACAAGCTGCCTGGTCACGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105994.4 |
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