Pregenerated sensors for SNRNP35 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029402Ensembl transcript IDs: ENSMUST00000031349.9, ENSMUST00000111453.2, ENSMUST00000136567.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCTTGCCTaGCATGCCGCACTCTCTAGTTCAATCCCCAGTACTGCTAAAGGC | + |
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Preference number: 1 (lower is better) Translates to: CFSLSSYVAVVGALA*HAALSSSIPSTAKG Trigger: GCCTTTAGCAGTACTGGGGATTGAACTAGAGAGTGCGGCATGTCAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| 3UTR CCA 90 bp | ATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTaGTTGGAGCGCTTGCCTGACATGCCGCACTCTCTAGTTCAATCC | + |
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Preference number: 1 (lower is better) Translates to: ISSYTLVSPSHPMWL*LERLPDMPHSLVQS Trigger: GGATTGAACTAGAGAGTGCGGCATGTCAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| 3UTR TCA 90 bp | TCCATCCTTCTGCCTCCAACTCCCAAGTGCTGGGTTGACAGCATGTaGAAACTCTTCTATTTCCACAGGAGCTGGACATTTCTTCTTACA | + |
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Preference number: 1 (lower is better) Translates to: SILLPPTPKCWVDSM*KLFYFHRSWTFLLT Trigger: TGTAAGAAGAAATGTCCAGCTCCTGTGGAAATAGAAGAGTTTTCACATGCTGTCAACCCAGCACTTGGGAGTTGGAGGCAGAAGGATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCTTGCCTGACATGCCGCGGCACTGCCCCAGCCTaGCGGAGGCTGCCTGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: FLPLILCGCGWSACLTCRGTAPA*RRLPAA Trigger: AGCAGCAGGCAGCCTCCGTCAGGCTGGGGCAGTGCC...GCGGCATGTCAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| 3UTR-3UTR TCA 90 bp | CTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCTTGCGGCACTGCCCCAGCCTaGCGGAGGCTGCCTGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: LTHLFLPLILCGCGWSACGTAPA*RRLPAA Trigger: AGCAGCAGGCAGCCTCCGTCAGGCTGGGGCAGTGCC...GCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| 3UTR CAA 90 bp | ACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCTaGCCTGACATGCCGCACTCTCTAGTTCAATCCCCAGTACTGCTA | + |
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Preference number: 2 (lower is better) Translates to: TLVSPSHPMWLWLER*PDMPHSLVQSPVLL Trigger: TAGCAGTACTGGGGATTGAACTAGAGAGTGCGGCATGTCAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| 3UTR CAA 90 bp | TCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTaGGAGCGCTTGCCTGACATGCCGCACTCTCTAGTTCAATCCCCA | + |
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Preference number: 2 (lower is better) Translates to: SSYTLVSPSHPMWLW*ERLPDMPHSLVQSP Trigger: TGGGGATTGAACTAGAGAGTGCGGCATGTCAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| 3UTR-3UTR CCA 90 bp | CCAAGTGCTGGGTTGACAGCATGTGAAAACTCTTCTATTTCCACAGGAGCTGGACTATGTGGCTGTGGTTaGAGCGCTTGCCTGACATGC | + |
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Preference number: 2 (lower is better) Translates to: PSAGLTACENSSISTGAGLCGCG*SACLTC Trigger: GCATGTCAGGCAAGCGCTCCAACCACAGCCACATAG...TCCAGCTCCTGTGGAAATAGAAGAGTTTTCACATGCTGTCAACCCAGCACTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| 3UTR CAA 90 bp | CCCTCTCTCTTTCCATCCTTCTGCCTCCAACTCCCAAGTGCTGGGTaGACAGCATGTGAAAACTCTTCTATTTCCACAGGAGCTGGACAT | + |
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Preference number: 2 (lower is better) Translates to: PSLFPSFCLQLPSAG*TACENSSISTGAGH Trigger: ATGTCCAGCTCCTGTGGAAATAGAAGAGTTTTCACATGCTGTCAACCCAGCACTTGGGAGTTGGAGGCAGAAGGATGGAAAGAGAGAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| 3UTR CCA 72 bp | TACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTaGTTGGAGCGCTTGCCTGACATGCCGCACTCTCTA | + |
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Preference number: 3 (lower is better) Translates to: YTLVSPSHPMWL*LERLPDMPHSL Trigger: TAGAGAGTGCGGCATGTCAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| 3UTR CCA 72 bp | TCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTaGCTGTGGTTGGAGCGCTTGCCTGACATGCCGCAC | + |
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Preference number: 3 (lower is better) Translates to: SSYTLVSPSHPM*LWLERLPDMPH Trigger: GTGCGGCATGTCAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| 3UTR TCA 72 bp | CTGCCTCCAACTCCCAAGTGCTGGGTTGACAGCATGTaGAAACTCTTCTATTTCCACAGGAGCTGGACATTT | + |
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Preference number: 3 (lower is better) Translates to: LPPTPKCWVDSM*KLFYFHRSWTF Trigger: AAATGTCCAGCTCCTGTGGAAATAGAAGAGTTTTCACATGCTGTCAACCCAGCACTTGGGAGTTGGAGGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CCA 90 bp | TTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCTTGCCTGACATGCCGCCCCGTTCCCTGGGCCTaGGGTCCCAGTGTCTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: FLPLILCGCGWSACLTCRPVPWA*GPSVCP Trigger: GGGACAGACACTGGGACCCCAGGCCCAGGGAACGGG...GCGGCATGTCAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR TCA 90 bp | TCCCCAGTACTGCTAAAGGCACTGCCCCAGCCTGACGGAGGCTGCCTGCTGCTGTCTCGTGCTGGTCAATaGCCAGGCCATCAGCATCTC | + |
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Preference number: 4 (lower is better) Translates to: SPVLLKALPQPDGGCLLLSRAGQ*PGHQHL Trigger: GAGATGCTGATGGCCTGGTCATTGACCAGCACGAGA...CAGCAGCAGGCAGCCTCCGTCAGGCTGGGGCAGTGCCTTTAGCAGTACTGGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CCA 90 bp | TCCCCAGTACTGCTAAAGGCACTGCCCCAGCCTGACGGAGGCTGCCTGCTGCTGGCGGGTCATATTCCTTaGCAATGGGCATCCAGTCGC | + |
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Preference number: 4 (lower is better) Translates to: SPVLLKALPQPDGGCLLLAGHIP*QWASSR Trigger: GCGACTGGATGCCCATTGCCAAGGAATATGACCCGC...CAGCAGCAGGCAGCCTCCGTCAGGCTGGGGCAGTGCCTTTAGCAGTACTGGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CCA 90 bp | ACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCTTGCCTGCCCGTTCCCTGGGCCTaGGGTCCCAGTGTCTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: THLFLPLILCGCGWSACLPVPWA*GPSVCP Trigger: GGGACAGACACTGGGACCCCAGGCCCAGGGAACGGG...CAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR TCA 90 bp | TTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCTTGCCTGACATGCCGCGGAGGGGGTCTCCGGTaGCTCCTTTGTTGGGGACAT | + |
|
Preference number: 4 (lower is better) Translates to: FLPLILCGCGWSACLTCRGGGLR*LLCWGH Trigger: ATGTCCCCAACAAAGGAGTCACCGGAGACCCCCTCC...GCGGCATGTCAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR GCA 90 bp | CTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCTTGCACCCTGGCCCTCTCTTaGCAGTGCTTCTCTCGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LTHLFLPLILCGCGWSACTLALS*QCFSRP Trigger: GGGCCGAGAGAAGCACTGGCAAGAGAGGGCCAGGGT...GCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CCA 90 bp | TTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCTTGCCTGACATGCTCTCAGGCCACACCCTaGCCCTCTCTTGCCAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: LFLPLILCGCGWSACLTCSQATP*PSLASA Trigger: AGCACTGGCAAGAGAGGGCCAGGGTGTGGCCTGAGA...GCATGTCAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR GCA 90 bp | TTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCTTGCCTGACATGCCGCCCACCGAACCTCAGCTaGCCAGATTCCTTTTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: FLPLILCGCGWSACLTCRPPNLS*PDSFFP Trigger: TGGGAAAAAGGAATCTGGGCAGCTGAGGTTCGGTGG...GCGGCATGTCAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CCA 90 bp | TCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCTCTCAGGCCACACCCTaGCCCTCTCTTGCCAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: SSYTLVSPSHPMWLWLERSQATP*PSLASA Trigger: AGCACTGGCAAGAGAGGGCCAGGGTGTGGCCTGAGA...GCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CCA 90 bp | GGAGCTGGACATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTCATGATCCCGTTCCCTaGGCCTGGGGTCCCAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: GAGHFFLHTCFSLSSYVAHDPVP*AWGPSV Trigger: GACACTGGGACCCCAGGCCCAGGGAACGGGATCATG...AGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAATGTCCAGCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| 3UTR CAA 72 bp | ACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTaGGAGCGCTTGCCTGACATGCCGCACTCTCTAGTT | + |
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Preference number: 4 (lower is better) Translates to: TLVSPSHPMWLW*ERLPDMPHSLV Trigger: AACTAGAGAGTGCGGCATGTCAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CCA 90 bp | CATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGACATGATCCCGTTCCCTaGGCCTGGGGTCCCAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: HFFLHTCFSLSSYVAVVGHDPVP*AWGPSV Trigger: GACACTGGGACCCCAGGCCCAGGGAACGGGATCATG...TCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CCA 90 bp | TTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCGGGTCATATTCCTTaGCAATGGGCATCCAGTCGC | + |
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Preference number: 4 (lower is better) Translates to: FLLTHLFLPLILCGCGWSAGHIP*QWASSR Trigger: GCGACTGGATGCCCATTGCCAAGGAATATGACCCGC...GCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR TCA 90 bp | CATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGATCTCGTGCTGGTCAATaGCCAGGCCATCAGCATCTC | + |
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Preference number: 4 (lower is better) Translates to: HFFLHTCFSLSSYVAVVGSRAGQ*PGHQHL Trigger: GAGATGCTGATGGCCTGGTCATTGACCAGCACGAGA...TCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR TCA 90 bp | TTGACAGCATGTGAAAACTCTTCTATTTCCACAGGAGCTGGACATTTCTTCTTAGGAGGGGGTCTCCGGTaGCTCCTTTGTTGGGGACAT | + |
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Preference number: 4 (lower is better) Translates to: LTACENSSISTGAGHFFLGGGLR*LLCWGH Trigger: ATGTCCCCAACAAAGGAGTCACCGGAGACCCCCTCC...TAAGAAGAAATGTCCAGCTCCTGTGGAAATAGAAGAGTTTTCACATGCTGTCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR GCA 90 bp | CATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGACCACCGAACCTCAGCTaGCCAGATTCCTTTTTCCCA | + |
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Preference number: 4 (lower is better) Translates to: HFFLHTCFSLSSYVAVVGPPNLS*PDSFFP Trigger: TGGGAAAAAGGAATCTGGGCAGCTGAGGTTCGGTGG...TCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CCA 90 bp | CCAAGTGCTGGGTTGACAGCATGTGAAAACTCTTCTATTTCCACAGGAGCTGGAACGAATATCTCGTGCTaGTCAATGACCAGGCCATCA | + |
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Preference number: 4 (lower is better) Translates to: PSAGLTACENSSISTGAGTNISC*SMTRPS Trigger: TGATGGCCTGGTCATTGACCAGCACGAGATATTCGT...TCCAGCTCCTGTGGAAATAGAAGAGTTTTCACATGCTGTCAACCCAGCACTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR GCA 90 bp | ACATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGCTGCAAGTTCAGTCGTaGCACAAACAGGGTAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: TFLLTHLFLPLILCGCGWLQVQS*HKQGKE Trigger: CTCCTTACCCTGTTTGTGGCACGACTGAACTTGCAG...CCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CCA 90 bp | CCACAGGAGCTGGACATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTTTCCCTTCTCTATGTaGCTCATTCTTGACAACTGG | + |
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Preference number: 4 (lower is better) Translates to: PQELDISSYTLVSPSHPMFPFSM*LILDNW Trigger: CCAGTTGTCAAGAATGAGCCACATAGAGAAGGGAAA...CATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAATGTCCAGCTCCTGTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR GCA 90 bp | TTGACAGCATGTGAAAACTCTTCTATTTCCACAGGAGCTGGACATTTCTTCTTACTGCAAGTTCAGTCGTaGCACAAACAGGGTAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: LTACENSSISTGAGHFFLLQVQS*HKQGKE Trigger: CTCCTTACCCTGTTTGTGGCACGACTGAACTTGCAG...TAAGAAGAAATGTCCAGCTCCTGTGGAAATAGAAGAGTTTTCACATGCTGTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CCA 90 bp | GGAGCTGGACATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTTTAACTTTTCCTCTTTaGTCTGCAAGTTCAGTCGTG | + |
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Preference number: 4 (lower is better) Translates to: GAGHFFLHTCFSLSSYVALTFPL*SASSVV Trigger: CACGACTGAACTTGCAGACCAAAGAGGAAAAGTTAA...AGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAATGTCCAGCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CCA 90 bp | CATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGATTTCCCTTCTCTATGTaGCTCATTCTTGACAACTGG | + |
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Preference number: 4 (lower is better) Translates to: HFFLHTCFSLSSYVAVVGFPFSM*LILDNW Trigger: CCAGTTGTCAAGAATGAGCCACATAGAGAAGGGAAA...TCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CCA 90 bp | CATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGATTAACTTTTCCTCTTTaGTCTGCAAGTTCAGTCGTG | + |
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Preference number: 4 (lower is better) Translates to: HFFLHTCFSLSSYVAVVGLTFPL*SASSVV Trigger: CACGACTGAACTTGCAGACCAAAGAGGAAAAGTTAA...TCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS TCA 90 bp | CATCTCTGTAGGCCTTCATCAGGGCCCTCTCCTCCTTGTACTCAATaGAGGCGTAGCCCTTGGAGAAGCCTGTCACCAGGTCCCGAACCA | + |
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Preference number: 5 (lower is better) Translates to: HLCRPSSGPSPPCTQ*RRSPWRSLSPGPEP Trigger: TGGTTCGGGACCTGGTGACAGGCTTCTCCAAGGGCTACGCCTTCATTGAGTACAAGGAGGAGAGGGCCCTGATGAAGGCCTACAGAGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 ENSMUST00000136567.2 |
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| CDS-3UTR CAA 90 bp | TCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCCACCCTGGCCCTCTCTaGCCAGTGCTTCTCTCGGCC | + |
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Preference number: 5 (lower is better) Translates to: SSYTLVSPSHPMWLWLERHPGPL*PVLLSA Trigger: GGCCGAGAGAAGCACTGGCAAGAGAGGGCCAGGGTG...GCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CAA 90 bp | GGAGCTGGACATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTCACCCTGGCCCTCTCTaGCCAGTGCTTCTCTCGGCC | + |
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Preference number: 5 (lower is better) Translates to: GAGHFFLHTCFSLSSYVAHPGPL*PVLLSA Trigger: GGCCGAGAGAAGCACTGGCAAGAGAGGGCCAGGGTG...AGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAATGTCCAGCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CAA 90 bp | CCAAGTGCTGGGTTGACAGCATGTGAAAACTCTTCTATTTCCACAGGAGCTGGACTCTTGTCCCGGCTTTaGACCCTCTCCTCCCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: PSAGLTACENSSISTGAGLLSRL*TLSSLN Trigger: GTTCAGGGAGGAGAGGGTCAAAAGCCGGGACAAGAG...TCCAGCTCCTGTGGAAATAGAAGAGTTTTCACATGCTGTCAACCCAGCACTTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS GCA 90 bp | TCACCATACCGGGAGAAGACTTCCTTTAACTTTTCCTCTTTGGTCTaGAAGTTCAGTCGTGCCACAAACAGGGTAAGGAGGGGGTCTCCG | + |
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Preference number: 5 (lower is better) Translates to: SPYREKTSFNFSSLV*KFSRATNRVRRGSP Trigger: CGGAGACCCCCTCCTTACCCTGTTTGTGGCACGACTGAACTTGCAGACCAAAGAGGAAAAGTTAAAGGAAGTCTTCTCCCGGTATGGTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 ENSMUST00000136567.2 |
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| CDS-3UTR CAA 90 bp | TTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCCTCTTGTCCCGGCTTTaGACCCTCTCCTCCCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: FLLTHLFLPLILCGCGWSLLSRL*TLSSLN Trigger: GTTCAGGGAGGAGAGGGTCAAAAGCCGGGACAAGAG...GCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS CCA 90 bp | CCTCCTTTCCCTTTTCCCTTCTCTATGTGGCTCATTCTTGACAACTaGCAAGTTAATGGGTTTTCGGAAAGGCCGATCTCGCCCACCGAA | + |
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Preference number: 5 (lower is better) Translates to: PPFPFPFSMWLILDN*QVNGFSERPISPTE Trigger: TTCGGTGGGCGAGATCGGCCTTTCCGAAAACCCATTAACTTGCCAGTTGTCAAGAATGAGCCACATAGAGAAGGGAAAAGGGAAAGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CAA 90 bp | TTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCTTGCCTGACATGCCGCTTTAACTTTTCCTCTTaGGTCTGCAAGTTCAGTCGT | + |
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Preference number: 5 (lower is better) Translates to: FLPLILCGCGWSACLTCRFNFSS*VCKFSR Trigger: ACGACTGAACTTGCAGACCAAAGAGGAAAAGTTAAA...GCGGCATGTCAGGCAAGCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CAA 90 bp | TTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGTTACTTCTGTCCCTCTaGTCCCGGCTTTTGACCCTC | + |
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Preference number: 5 (lower is better) Translates to: FFLHTCFSLSSYVAVVGALLLSL*SRLLTL Trigger: GAGGGTCAAAAGCCGGGACAAGAGGGACAGAAGTAA...CGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CAA 90 bp | ACATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGGGTCATATTCCTaGGCAATGGGCATCCAGTCG | + |
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Preference number: 5 (lower is better) Translates to: TFLLTHLFLPLILCGCGWSGSYS*AMGIQS Trigger: CGACTGGATGCCCATTGCCAAGGAATATGACCCGCT...CCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CAA 90 bp | ACAGGAGCTGGACATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGTTACTTCTGTCCCTCTaGTCCCGGCTTTTGACCCTC | + |
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Preference number: 5 (lower is better) Translates to: TGAGHFFLHTCFSLSSYVLLLSL*SRLLTL Trigger: GAGGGTCAAAAGCCGGGACAAGAGGGACAGAAGTAA...CACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAATGTCCAGCTCCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CAA 90 bp | TCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGAGCGCCTATGTGGCTCATTCTaGACAACTGGCAAGTTAATG | + |
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Preference number: 5 (lower is better) Translates to: SSYTLVSPSHPMWLWLERLCGSF*TTGKLM Trigger: CATTAACTTGCCAGTTGTCAAGAATGAGCCACATAG...GCGCTCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CAA 90 bp | TTGACAGCATGTGAAAACTCTTCTATTTCCACAGGAGCTGGACATTTCTTCTTAAGCGGGTCATATTCCTaGGCAATGGGCATCCAGTCG | + |
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Preference number: 5 (lower is better) Translates to: LTACENSSISTGAGHFFLSGSYS*AMGIQS Trigger: CGACTGGATGCCCATTGCCAAGGAATATGACCCGCT...TAAGAAGAAATGTCCAGCTCCTGTGGAAATAGAAGAGTTTTCACATGCTGTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS-3UTR CAA 90 bp | CATTTCTTCTTACACACTTGTTTCTCCCTCTCATCCTATGTGGCTGTGGTTGGATTTAACTTTTCCTCTTaGGTCTGCAAGTTCAGTCGT | + |
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Preference number: 5 (lower is better) Translates to: HFFLHTCFSLSSYVAVVGFNFSS*VCKFSR Trigger: ACGACTGAACTTGCAGACCAAAGAGGAAAAGTTAAA...TCCAACCACAGCCACATAGGATGAGAGGGAGAAACAAGTGTGTAAGAAGAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS CAA 90 bp | CCTCTCTCTTTCCCAATCATTCTCAGGCCACACCCTGGCCCTCTCTaGCCAGTGCTTCTCTCGGCCCCTGTCATGATCCCGTTCCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: PLSFPIILRPHPGPL*PVLLSAPVMIPFPG Trigger: CCCAGGGAACGGGATCATGACAGGGGCCGAGAGAAGCACTGGCAAGAGAGGGCCAGGGTGTGGCCTGAGAATGATTGGGAAAGAGAGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS GCA 72 bp | TTTCGGAAAGGCCGATCTCGCCCACCGAACCTCAGCTaGCCAGATTCCTTTTTCCCACCCAATCCGCCACCC | + |
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Preference number: 6 (lower is better) Translates to: FRKGRSRPPNLS*PDSFFPPNPPP Trigger: GGGTGGCGGATTGGGTGGGAAAAAGGAATCTGGGCAGCTGAGGTTCGGTGGGCGAGATCGGCCTTTCCGAAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS CCA 72 bp | GCGGGCCAGCATGGCCCTCCACACAGCTCGGTCATGTaGGTCTTCATCTGTACCATCGATGCTGCCAGCTTT | + |
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Preference number: 6 (lower is better) Translates to: AGQHGPPHSSVM*VFICTIDAASF Trigger: AAAGCTGGCAGCATCGATGGTACAGATGAAGACCCACATGACCGAGCTGTGTGGAGGGCCATGCTGGCCCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 ENSMUST00000136567.2 |
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| CDS CAA 90 bp | CGAATGTCACCATACCGGGAGAAGACTTCCTTTAACTTTTCCTCTTaGGTCTGCAAGTTCAGTCGTGCCACAAACAGGGTAAGGAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: RMSPYREKTSFNFSS*VCKFSRATNRVRRG Trigger: CCCCCTCCTTACCCTGTTTGTGGCACGACTGAACTTGCAGACCAAAGAGGAAAAGTTAAAGGAAGTCTTCTCCCGGTATGGTGACATTCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 ENSMUST00000136567.2 |
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| CDS TCA 72 bp | CTAGCTCATAGTCCACGAATATCTCGTGCTGGTCAATaGCCAGGCCATCAGCATCTCTGTAGGCCTTCATCA | + |
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Preference number: 6 (lower is better) Translates to: LAHSPRISRAGQ*PGHQHLCRPSS Trigger: TGATGAAGGCCTACAGAGATGCTGATGGCCTGGTCATTGACCAGCACGAGATATTCGTGGACTATGAGCTAG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS CCA 72 bp | CCTTTTCCCTTCTCTATGTGGCTCATTCTTGACAACTaGCAAGTTAATGGGTTTTCGGAAAGGCCGATCTCG | + |
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Preference number: 6 (lower is better) Translates to: PFPFSMWLILDN*QVNGFSERPIS Trigger: CGAGATCGGCCTTTCCGAAAACCCATTAACTTGCCAGTTGTCAAGAATGAGCCACATAGAGAAGGGAAAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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| CDS CAA 72 bp | CTCCTTTCCCTTTTCCCTTCTCTATGTGGCTCATTCTaGACAACTGGCAAGTTAATGGGTTTTCGGAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: LLSLFPSLCGSF*TTGKLMGFRKG Trigger: GCCTTTCCGAAAACCCATTAACTTGCCAGTTGTCAAGAATGAGCCACATAGAGAAGGGAAAAGGGAAAGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031349.9 ENSMUST00000111453.2 |
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