Pregenerated sensors for SNRNP27 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001158Ensembl transcript IDs: ENSMUST00000001186.11, ENSMUST00000113683.2
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AGTGGCCTTCTAAACATGAGGAATGTAAAAGACTGGAAATGGCTGCATAGCCTACTCACTGACCAGTCTTaGCAGAATTATGAGCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: SGLLNMRNVKDWKWLHSLLTDQS*QNYELQ Trigger: CTGAAGCTCATAATTCTGGCAAGACTGGTCAGTGAG...TAGGCTATGCAGCCATTTCCAGTCTTTTACATTCCTCATGTTTAGAAGGCCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| 3UTR GCA 72 bp | CTCAGCAGTGGGAAAAGCGAGCTCACTGACCAGTCTTaGCAGAATTATGAGCTTCAGGTTCAGAGACCCCCA | + |
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Preference number: 3 (lower is better) Translates to: LSSGKSELTDQS*QNYELQVQRPP Trigger: TGGGGGTCTCTGAACCTGAAGCTCATAATTCTGGCAAGACTGGTCAGTGAGCTCGCTTTTCCCACTGCTGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| 3UTR TCA 72 bp | ATCACCAGCATTGTAGGGGTAGAGGTGCAAGGATTGTaGGTTCAAGCCCAGCCTGGGATATATAGAGACCCT | + |
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Preference number: 3 (lower is better) Translates to: ITSIVGVEVQGL*VQAQPGIYRDP Trigger: AGGGTCTCTATATATCCCAGGCTGGGCTTGAACTCACAATCCTTGCACCTCTACCCCTACAATGCTGGTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS-3UTR CCA 90 bp | CAGTTTCAAAGGAACAAGGACAGACAAAAGGGCTGGTGGCCATCCCAGGGACATCTCTCTCCCTGGACCTaGACCTTTCTCGGCGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: QFQRNKDRQKGWWPSQGHLSPWT*TFLGVF Trigger: GAAGACGCCGAGAAAGGTCCAGGTCCAGGGAGAGAG...ATGTCCCTGGGATGGCCACCAGCCCTTTTGTCTGTCCTTGTTCCTTTGAAACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001186.11 |
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| CDS-3UTR CCA 90 bp | AAGACAGCACACACAGTTTCAAAGGAACAAGGACAGACAAAAGGGCTGGTGGCCGTCGTCTTGGAGACCTaGAGCGTCTTCGGTGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: KTAHTVSKEQGQTKGLVAVVLET*SVFGVE Trigger: CTCCACACCGAAGACGCTCCAGGTCTCCAAGACGAC...GGCCACCAGCCCTTTTGTCTGTCCTTGTTCCTTTGAAACTGTGTGTGCTGTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001186.11 |
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| CDS-3UTR CCA 90 bp | CAGTTTCAAAGGAACAAGGACAGACAAAAGGGCTGGTGGCCATCCCAGGGACATGGATCTATGTCGTCTTaGAGACCTGGAGCGTCTTCG | + |
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Preference number: 4 (lower is better) Translates to: QFQRNKDRQKGWWPSQGHGSMSS*RPGASS Trigger: CGAAGACGCTCCAGGTCTCCAAGACGACATAGATCC...ATGTCCCTGGGATGGCCACCAGCCCTTTTGTCTGTCCTTGTTCCTTTGAAACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001186.11 |
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| CDS-3UTR CCA 90 bp | CAAGCCCAGCCTGGGATATATAGAGACCCTGTTCTCAAAAAGAGAGCCAAGGAGTGTAATCCCAACATTTaGGCAGCAGAGGCCCACGTG | + |
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Preference number: 4 (lower is better) Translates to: QAQPGIYRDPVLKKRAKECNPNI*AAEAHV Trigger: CACGTGGGCCTCTGCTGCCCAAATGTTGGGATTACA...CTCCTTGGCTCTCTTTTTGAGAACAGGGTCTCTATATATCCCAGGCTGGGCTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS-3UTR GCA 90 bp | AGGTGCAAGGATTGTGAGTTCAAGCCCAGCCTGGGATATATAGAGACCCTGTTCACAGCTTGGGGAGCATaGATACCTGTACTTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: RCKDCEFKPSLGYIETLFTAWGA*IPVLPL Trigger: AAGAGGAAGTACAGGTATGCATGCTCCCCAAGCTGT...GAACAGGGTCTCTATATATCCCAGGCTGGGCTTGAACTCACAATCCTTGCACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS-3UTR CCA 90 bp | AGTGGCCTTCTAAACATGAGGAATGTAAAAGACTGGAAATGGCTGCATAGCCTACTCTCTCCCTGGACCTaGACCTTTCTCGGCGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: SGLLNMRNVKDWKWLHSLLSPWT*TFLGVF Trigger: GAAGACGCCGAGAAAGGTCCAGGTCCAGGGAGAGAG...TAGGCTATGCAGCCATTTCCAGTCTTTTACATTCCTCATGTTTAGAAGGCCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS-3UTR CCA 90 bp | AGTGGCCTTCTAAACATGAGGAATGTAAAAGACTGGAAATGGCTGCATAGCCTAGTCGTCTTGGAGACCTaGAGCGTCTTCGGTGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: SGLLNMRNVKDWKWLHSLVVLET*SVFGVE Trigger: CTCCACACCGAAGACGCTCCAGGTCTCCAAGACGAC...TAGGCTATGCAGCCATTTCCAGTCTTTTACATTCCTCATGTTTAGAAGGCCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS-3UTR CCA 90 bp | AAGGATTGTGAGTTCAAGCCCAGCCTGGGATATATAGAGACCCTGTTCTCAAAACAAGCACACACAGCTTaGGGAGCATGCATACCTGTA | + |
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Preference number: 4 (lower is better) Translates to: KDCEFKPSLGYIETLFSKQAHTA*GACIPV Trigger: TACAGGTATGCATGCTCCCCAAGCTGTGTGTGCTTG...TTTTGAGAACAGGGTCTCTATATATCCCAGGCTGGGCTTGAACTCACAATCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS-3UTR CCA 90 bp | AAGGATTGTGAGTTCAAGCCCAGCCTGGGATATATAGAGACCCTGTTCTCAAAAAGGAGCCAATCTTGGTaGCAGATGCTTGTAATCCCA | + |
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Preference number: 4 (lower is better) Translates to: KDCEFKPSLGYIETLFSKRSQSW*QMLVIP Trigger: TGGGATTACAAGCATCTGCCACCAAGATTGGCTCCT...TTTTGAGAACAGGGTCTCTATATATCCCAGGCTGGGCTTGAACTCACAATCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS-3UTR CCA 90 bp | AGTGGCCTTCTAAACATGAGGAATGTAAAAGACTGGAAATGGCTGCATAGCCTACCCACGTGCAAACTGTaGAAAATGTCAACATGTCCT | + |
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Preference number: 4 (lower is better) Translates to: SGLLNMRNVKDWKWLHSLPTCKL*KMSTCP Trigger: AGGACATGTTGACATTTTCCACAGTTTGCACGTGGG...TAGGCTATGCAGCCATTTCCAGTCTTTTACATTCCTCATGTTTAGAAGGCCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS-3UTR GCA 90 bp | AGTGGCCTTCTAAACATGAGGAATGTAAAAGACTGGAAATGGCTGCATAGCCTATCAACATGTCCTACATaGAATAATCCTGTAGTAACA | + |
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Preference number: 4 (lower is better) Translates to: SGLLNMRNVKDWKWLHSLSTCPT*NNPVVT Trigger: TGTTACTACAGGATTATTGCATGTAGGACATGTTGA...TAGGCTATGCAGCCATTTCCAGTCTTTTACATTCCTCATGTTTAGAAGGCCACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS-3UTR CAA 90 bp | AACAAGGACAGACAAAAGGGCTGGTGGCCATCCCAGGGACATTGCCTTGAAAAGTTCGGTGTGGAGATCTaGAGCGGCTCCTTCTGCGAT | + |
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Preference number: 5 (lower is better) Translates to: NKDRQKGWWPSQGHCLEKFGVEI*SGSFCD Trigger: ATCGCAGAAGGAGCCGCTCAAGATCTCCACACCGAA...CTTTTCAAGGCAATGTCCCTGGGATGGCCACCAGCCCTTTTGTCTGTCCTTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001186.11 |
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| CDS-3UTR CAA 90 bp | CCTGTTCTCAAAAAGAGAGCCAAGGAGATGATGGTTCAATGGGTAAGAGTGGCCTTCGGTGTGGAGATCTaGAGCGGCTCCTTCTGCGAT | + |
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Preference number: 5 (lower is better) Translates to: PVLKKRAKEMMVQWVRVAFGVEI*SGSFCD Trigger: ATCGCAGAAGGAGCCGCTCAAGATCTCCACACCGAA...GGCCACTCTTACCCATTGAACCATCATCTCCTTGGCTCTCTTTTTGAGAACAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS-3UTR CAA 90 bp | AAGACAGCACACACAGTTTCAAAGGAACAAGGACAGACAAAAGGGCTGGTGGCCTGGATCTATGTCGTCTaGGAGACCTGGAGCGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: KTAHTVSKEQGQTKGLVAWIYVV*ETWSVF Trigger: GAAGACGCTCCAGGTCTCCAAGACGACATAGATCCA...GGCCACCAGCCCTTTTGTCTGTCCTTGTTCCTTTGAAACTGTGTGTGCTGTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001186.11 |
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| CDS-3UTR CAA 90 bp | CCTGTTCTCAAAAAGAGAGCCAAGGAGATGATGGTTCAATGGGTAAGAGTGGCCTGGATCTATGTCGTCTaGGAGACCTGGAGCGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: PVLKKRAKEMMVQWVRVAWIYVV*ETWSVF Trigger: GAAGACGCTCCAGGTCTCCAAGACGACATAGATCCA...GGCCACTCTTACCCATTGAACCATCATCTCCTTGGCTCTCTTTTTGAGAACAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS-3UTR CAA 90 bp | GGAACAAGGACAGACAAAAGGGCTGGTGGCCATCCCAGGGACATTGCCTTGAAACCTGTACTTCCTCTTTaGAGACACGTTGATGGCATA | + |
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Preference number: 5 (lower is better) Translates to: GTRTDKRAGGHPRDIALKPVLPL*RHVDGI Trigger: TATGCCATCAACGTGTCTCAAAAGAGGAAGTACAGG...TTTCAAGGCAATGTCCCTGGGATGGCCACCAGCCCTTTTGTCTGTCCTTGTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001186.11 |
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| CDS-3UTR CAA 90 bp | TGTTCTCAAAAAGAGAGCCAAGGAGATGATGGTTCAATGGGTAAGAGTGGCCTTGCAAGCACACACAGCTaGGGGAGCATGCATACCTGT | + |
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Preference number: 5 (lower is better) Translates to: CSQKESQGDDGSMGKSGLASTHS*GSMHTC Trigger: ACAGGTATGCATGCTCCCCAAGCTGTGTGTGCTTGC...AAGGCCACTCTTACCCATTGAACCATCATCTCCTTGGCTCTCTTTTTGAGAACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS GCA 90 bp | CAGAGGCCCACGTGCAAACTGTGGAAAATGTCAACATGTCCTACATaGAATAATCCTGTAGTAACATTCCTTTCCAAGCGCAAGCACACA | + |
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Preference number: 5 (lower is better) Translates to: QRPTCKLWKMSTCPT*NNPVVTFLSKRKHT Trigger: TGTGTGCTTGCGCTTGGAAAGGAATGTTACTACAGGATTATTGCATGTAGGACATGTTGACATTTTCCACAGTTTGCACGTGGGCCTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS-3UTR CAA 90 bp | GCAAGCATCCAAGAAGACAGCACACACAGTTTCAAAGGAACAAGGACAGACAAACTACCTTCTTCCCTTTaGTGGAGTCAAAAGAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: ASIQEDSTHSFKGTRTDKLPSSL*WSQKRQ Trigger: TTGCCTCTTTTGACTCCACAAAAGGGAAGAAGGTAG...TTTGTCTGTCCTTGTTCCTTTGAAACTGTGTGTGCTGTCTTCTTGGATGCTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001186.11 |
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| CDS-3UTR CAA 90 bp | AAGGATTGTGAGTTCAAGCCCAGCCTGGGATATATAGAGACCCTGTTCTCAAAACCTGTACTTCCTCTTTaGAGACACGTTGATGGCATA | + |
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Preference number: 5 (lower is better) Translates to: KDCEFKPSLGYIETLFSKPVLPL*RHVDGI Trigger: TATGCCATCAACGTGTCTCAAAAGAGGAAGTACAGG...TTTTGAGAACAGGGTCTCTATATATCCCAGGCTGGGCTTGAACTCACAATCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS CCA 72 bp | ACCTTTCTCGGCGTCTTCTTTCTCGATCCCGAGATGTaGACCGGGACCGCCTACGTTCCCTACGCGGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: TFLGVFFLDPEM*TGTAYVPYAGS Trigger: GCTCCCCGCGTAGGGAACGTAGGCGGTCCCGGTCCACATCTCGGGATCGAGAAAGAAGACGCCGAGAAAGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001186.11 ENSMUST00000113683.2 |
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| CDS GCA 72 bp | CCTTTCCAAGCGCAAGCACACACAGCTTGGGGAGCATaGATACCTGTACTTCCTCTTTTGAGACACGTTGAT | + |
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Preference number: 6 (lower is better) Translates to: PFQAQAHTAWGA*IPVLPLLRHVD Trigger: ATCAACGTGTCTCAAAAGAGGAAGTACAGGTATGCATGCTCCCCAAGCTGTGTGTGCTTGCGCTTGGAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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| CDS GCA 72 bp | ACGTGCAAACTGTGGAAAATGTCAACATGTCCTACATaGAATAATCCTGTAGTAACATTCCTTTCCAAGCGC | + |
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Preference number: 6 (lower is better) Translates to: TCKLWKMSTCPT*NNPVVTFLSKR Trigger: GCGCTTGGAAAGGAATGTTACTACAGGATTATTGCATGTAGGACATGTTGACATTTTCCACAGTTTGCACGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113683.2 |
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