Pregenerated sensors for SNRNP25 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040767Ensembl transcript IDs: ENSMUST00000039601.10, ENSMUST00000121182.2, ENSMUST00000149043.3
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CCAGGGATGCAGCTACCCCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCGGAGGGCGCCATCTTaGTGGGACAGGTCAGATCAC | + |
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Preference number: 2 (lower is better) Translates to: PGMQLPPTPFPLRSSGGRRRAPS*WDRSDH Trigger: GTGATCTGACCTGTCCCAGCAAGATGGCGCCCTCCG...GCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGGGGTAGCTGCATCCCTGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| 3UTR-3UTR GCA 90 bp | CCCCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTGCTGGGACACGGAGGGCGCCATCTTaGTGGGACAGGTCAGATCAC | + |
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Preference number: 2 (lower is better) Translates to: PPTPFPLRSSGGRHLAGTRRAPS*WDRSDH Trigger: GTGATCTGACCTGTCCCAGCAAGATGGCGCCCTCCG...TGTCCCAGCAAGATGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGGCATTCCAGGGATGCAGCTACCCCCAACACCCTTTCCCTTGAGGTCAAGCCAACACCCTTTCCCTTaGGGTCAAGCGGAGGGCGCC | + |
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Preference number: 2 (lower is better) Translates to: LGIPGMQLPPTPFPLRSSQHPFP*GQAEGA Trigger: GGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTG...GCTTGACCTCAAGGGAAAGGGTGTTGGGGGTAGCTGCATCCCTGGAATGCCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGACACAAAGCAAACACATTTATTCTATAAGCCAGGCCCACAACCACATAGGGCTGACAGCTCCACCTaGGCATTCCAGGGATGCAGC | + |
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Preference number: 2 (lower is better) Translates to: QDTKQTHLFYKPGPQPHRADSST*AFQGCS Trigger: GCTGCATCCCTGGAATGCCCAGGTGGAGCTGTCAGC...CCTATGTGGTTGTGGGCCTGGCTTATAGAATAAATGTGTTTGCTTTGTGTCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039601.10 |
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| 3UTR CCA 72 bp | TCCGAGGGTCCCAGGGCTCACGCTGACAGCTCCACCTaGGCATTCCAGGGATGCAGCTACCCCCAACACCCT | + |
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Preference number: 3 (lower is better) Translates to: SEGPRAHADSST*AFQGCSYPQHP Trigger: AGGGTGTTGGGGGTAGCTGCATCCCTGGAATGCCCAGGTGGAGCTGTCAGCGTGAGCCCTGGGACCCTCGGA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039601.10 |
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| 3UTR-3UTR CAA 90 bp | CTGGGCATTCCAGGGATGCAGCTACCCCCAACACCCTTTCCCTTGAGGTCAAGCGCGGAGGGCGCCATCTaGCTGGGACAGGTCAGATCA | + |
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Preference number: 3 (lower is better) Translates to: LGIPGMQLPPTPFPLRSSAEGAI*LGQVRS Trigger: TGATCTGACCTGTCCCAGCAAGATGGCGCCCTCCGC...GCTTGACCTCAAGGGAAAGGGTGTTGGGGGTAGCTGCATCCCTGGAATGCCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| 3UTR GCA 72 bp | ACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTaGTGGGACAGGTCAGATCACTGTGTCTGGTGTTCA | + |
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Preference number: 3 (lower is better) Translates to: TLSLEVKRRAPS*WDRSDHCVWCS Trigger: TGAACACCAGACACAGTGATCTGACCTGTCCCAGCAAGATGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121182.2 |
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| 3UTR-3UTR CAA 90 bp | CAAGACACAAAGCAAACACATTTATTCTATAAGCCAGGCCCACAACCACATAGGGCGGAGGGCGCCATCTaGCTGGGACAGGTCAGATCA | + |
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Preference number: 3 (lower is better) Translates to: QDTKQTHLFYKPGPQPHRAEGAI*LGQVRS Trigger: TGATCTGACCTGTCCCAGCAAGATGGCGCCCTCCGC...CCTATGTGGTTGTGGGCCTGGCTTATAGAATAAATGTGTTTGCTTTGTGTCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039601.10 |
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| 3UTR CCA 72 bp | GCGCCATCTTGCTGGGACAGGTCAGATCACTGTGTCTaGTGTTCACTTTTGCCTAAGCTTCTTGATAAAGGA | + |
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Preference number: 3 (lower is better) Translates to: APSCWDRSDHCV*CSLLPKLLDKG Trigger: TCCTTTATCAAGAAGCTTAGGCAAAAGTGAACACCAGACACAGTGATCTGACCTGTCCCAGCAAGATGGCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121182.2 |
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| CDS-3UTR TCA 90 bp | CCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTGCTGGGACAGGGTGCAGCTGATGTGCTaGACGCCGCCTTCCCGCTCC | + |
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Preference number: 4 (lower is better) Translates to: PNTLSLEVKRRAPSCWDRVQLMC*TPPSRS Trigger: GGAGCGGGAAGGCGGCGTTCAGCACATCAGCTGCAC...CCTGTCCCAGCAAGATGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121182.2 |
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| CDS-3UTR TCA 90 bp | AGGGATGCAGCTACCCCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCACTGCAAGGAGGGGACTaGGGTGCAGCTGATGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: RDAATPNTLSLEVKRRAPLQGGD*GAADVL Trigger: CAGCACATCAGCTGCACCTCAGTCCCCTCCTTGCAG...TGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGGGGTAGCTGCATCCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000121182.2 |
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| CDS-3UTR GCA 90 bp | GCAGCTACCCCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTGCCCGCCTTCCCGCTCCTaGTTGAGCTGCACGTATCTC | + |
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Preference number: 4 (lower is better) Translates to: AATPNTLSLEVKRRAPSCPPSRS*LSCTYL Trigger: GAGATACGTGCAGCTCAAGCAGGAGCGGGAAGGCGG...GCAAGATGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGGGGTAGCTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS-3UTR TCA 90 bp | AGGGATGCAGCTACCCCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCACTTCCCGCTCCTGCTTaGGCTGCACGTATCTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: RDAATPNTLSLEVKRRAPLPAPA*AARISG Trigger: TCCAGAGATACGTGCAGCTCAAGCAGGAGCGGGAAG...TGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGGGGTAGCTGCATCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS-3UTR TCA 90 bp | AGGGATGCAGCTACCCCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTCCTGTCCTCTGTaGGCTTCTCCCCAGCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: RDAATPNTLSLEVKRRAPSSCPL*ASPQLR Trigger: CCTCAGCTGGGGAGAAGCTCACAGAGGACAGGAAGA...TGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGGGGTAGCTGCATCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS-3UTR GCA 90 bp | CAGCTACCCCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTGCTCCGCCTTCCCGCTCCTaGTTGAGCTGCACGTATCTC | + |
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Preference number: 4 (lower is better) Translates to: QLPPTPFPLRSSGGRHLAPPSRS*LSCTYL Trigger: GAGATACGTGCAGCTCAAGCAGGAGCGGGAAGGCGG...AGCAAGATGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGGGGTAGCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS-3UTR GCA 90 bp | ACCCCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTGCTGGGACCGCTCCTGCTTGAGCTaGACGTATCTCTGGATAGCC | + |
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Preference number: 4 (lower is better) Translates to: TPNTLSLEVKRRAPSCWDRSCLS*TYLWIA Trigger: GGCTATCCAGAGATACGTGCAGCTCAAGCAGGAGCG...GTCCCAGCAAGATGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGGGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS-3UTR CCA 90 bp | GCAGCTACCCCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTGCTCAGGTCCAGGACCGTaGCATTCTGTACGACGACCA | + |
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Preference number: 4 (lower is better) Translates to: AATPNTLSLEVKRRAPSCSGPGP*HSVRRP Trigger: TGGTCGTCGTACAGAATGCCACGGTCCTGGACCTGA...GCAAGATGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGGGGTAGCTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS-3UTR TCA 90 bp | CACCTGGGCATTCCAGGGATGCAGCTACCCCCAACACCCTTTCCCTTGAGGTCACTTCCCGCTCCTGCTTaGGCTGCACGTATCTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: HLGIPGMQLPPTPFPLRSLPAPA*AARISG Trigger: TCCAGAGATACGTGCAGCTCAAGCAGGAGCGGGAAG...TGACCTCAAGGGAAAGGGTGTTGGGGGTAGCTGCATCCCTGGAATGCCCAGGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS-3UTR TCA 90 bp | CACCTGGGCATTCCAGGGATGCAGCTACCCCCAACACCCTTTCCCTTGAGGTCAGAGCTTCTCCCCAGCTaGGGTCAGATGGTATGTCCG | + |
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Preference number: 4 (lower is better) Translates to: HLGIPGMQLPPTPFPLRSELLPS*GQMVCP Trigger: CGGACATACCATCTGACCTCAGCTGGGGAGAAGCTC...TGACCTCAAGGGAAAGGGTGTTGGGGGTAGCTGCATCCCTGGAATGCCCAGGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS-3UTR TCA 90 bp | CCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTGCTGGGACAGGGGATGCCATAATCTCTaGGCTTCTTCCTGTCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: PNTLSLEVKRRAPSCWDRGCHNL*ASSCPL Trigger: CAGAGGACAGGAAGAAGCTCAGAGATTATGGCATCC...CCTGTCCCAGCAAGATGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS-3UTR CCA 90 bp | CCCCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTGCTGGGACAAGCTGCACGTATCTCTaGATAGCCTTCTTCAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: PPTPFPLRSSGGRHLAGTSCTYL*IAFFRS Trigger: GGACCTGAAGAAGGCTATCCAGAGATACGTGCAGCT...TGTCCCAGCAAGATGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS-3UTR TCA 90 bp | CAGCTACCCCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTGCTGGATGCCATAATCTCTaGGCTTCTTCCTGTCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: QLPPTPFPLRSSGGRHLAGCHNL*ASSCPL Trigger: CAGAGGACAGGAAGAAGCTCAGAGATTATGGCATCC...AGCAAGATGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGGGGTAGCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS-3UTR TCA 90 bp | AAGCCAGGCCCACAACCACATAGGACCTTTGGGCCAAGTTCAAAGGAAAGTAAAGACCAGCTGATGTGCTaGACGCCGCCTTCCCGCTCC | + |
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Preference number: 4 (lower is better) Translates to: KPGPQPHRTFGPSSKESKDQLMC*TPPSRS Trigger: GGAGCGGGAAGGCGGCGTTCAGCACATCAGCTGGTC...TTTACTTTCCTTTGAACTTGGCCCAAAGGTCCTATGTGGTTGTGGGCCTGGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039601.10 |
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| CDS-3UTR CCA 90 bp | ACCCCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTGCTGGGACTATTCCAGTGCAATCTaGGAGTTGACCTCTTCTAGA | + |
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Preference number: 4 (lower is better) Translates to: TPNTLSLEVKRRAPSCWDYSSAI*ELTSSR Trigger: TCTAGAAGAGGTCAACTCCCAGATTGCACTGGAATA...GTCCCAGCAAGATGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS-3UTR GCA 90 bp | AGTTCAAAGGAAAGTAAAGGGCAGAGGAATTTTCCACAATCCGAGGGTCCCAGGCGCTCCTGCTTGAGCTaGACGTATCTCTGGATAGCC | + |
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Preference number: 4 (lower is better) Translates to: SSKESKGQRNFPQSEGPRRSCLS*TYLWIA Trigger: GGCTATCCAGAGATACGTGCAGCTCAAGCAGGAGCG...CCTGGGACCCTCGGATTGTGGAAAATTCCTCTGCCCTTTACTTTCCTTTGAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039601.10 |
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| CDS-3UTR TCA 90 bp | CAAGACACAAAGCAAACACATTTATTCTATAAGCCAGGCCCACAACCACATAGGTCTTCCTGTCCTCTGTaGGCTTCTCCCCAGCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: QDTKQTHLFYKPGPQPHRSSCPL*ASPQLR Trigger: CCTCAGCTGGGGAGAAGCTCACAGAGGACAGGAAGA...CCTATGTGGTTGTGGGCCTGGCTTATAGAATAAATGTGTTTGCTTTGTGTCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039601.10 |
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| CDS-3UTR TCA 90 bp | TCAGATCACTGTGTCTGGTGTTCACTTTTGCCTAAGCTTCTTGATAAAGGAAACGAGCTTCTCCCCAGCTaGGGTCAGATGGTATGTCCG | + |
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Preference number: 4 (lower is better) Translates to: SDHCVWCSLLPKLLDKGNELLPS*GQMVCP Trigger: CGGACATACCATCTGACCTCAGCTGGGGAGAAGCTC...GTTTCCTTTATCAAGAAGCTTAGGCAAAAGTGAACACCAGACACAGTGATCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121182.2 |
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| CDS-3UTR CCA 90 bp | GACAGGTCAGATCACTGTGTCTGGTGTTCACTTTTGCCTAAGCTTCTTGATAAATCAGGTCCAGGACCGTaGCATTCTGTACGACGACCA | + |
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Preference number: 4 (lower is better) Translates to: DRSDHCVWCSLLPKLLDKSGPGP*HSVRRP Trigger: TGGTCGTCGTACAGAATGCCACGGTCCTGGACCTGA...TTTATCAAGAAGCTTAGGCAAAAGTGAACACCAGACACAGTGATCTGACCTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121182.2 |
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| 3UTR CAA 72 bp | TATTCTATAAGCCAGGCCCACAACCACATAGGACCTTaGGGCCAAGTTCAAAGGAAAGTAAAGGGCAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: YSISQAHNHIGP*GQVQRKVKGRG Trigger: TCCTCTGCCCTTTACTTTCCTTTGAACTTGGCCCAAAGGTCCTATGTGGTTGTGGGCCTGGCTTATAGAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039601.10 |
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| CDS-3UTR CCA 90 bp | AAGCCAGGCCCACAACCACATAGGACCTTTGGGCCAAGTTCAAAGGAAAGTAAATATTCCAGTGCAATCTaGGAGTTGACCTCTTCTAGA | + |
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Preference number: 4 (lower is better) Translates to: KPGPQPHRTFGPSSKESKYSSAI*ELTSSR Trigger: TCTAGAAGAGGTCAACTCCCAGATTGCACTGGAATA...TTTACTTTCCTTTGAACTTGGCCCAAAGGTCCTATGTGGTTGTGGGCCTGGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039601.10 |
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| CDS-3UTR CAA 90 bp | CCCCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTGCTGGGACAACCTCTCCATCCATCTaGCACACACGGACAGTCATC | + |
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Preference number: 5 (lower is better) Translates to: PPTPFPLRSSGGRHLAGTTSPSI*HTRTVI Trigger: GATGACTGTCCGTGTGTGCAAGATGGATGGAGAGGT...TGTCCCAGCAAGATGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS GCA 90 bp | TGGCATTCTGTACGACGACCACAGGCATTACCTCTCCATCCATCTTaGACACACGGACAGTCATCGCCTGGCCATATTCCAGTGCAATCT | + |
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Preference number: 5 (lower is better) Translates to: WHSVRRPQALPLHPS*THGQSSPGHIPVQS Trigger: AGATTGCACTGGAATATGGCCAGGCGATGACTGTCCGTGTGTGCAAGATGGATGGAGAGGTAATGCCTGTGGTCGTCGTACAGAATGCCA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS-3UTR CAA 90 bp | CCCAACACCCTTTCCCTTGAGGTCAAGCGGAGGGCGCCATCTTGCTGGGACAGGTTTTGCCTAAGCTTCTaGATAAAGGAAACCTCATCT | + |
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Preference number: 5 (lower is better) Translates to: PNTLSLEVKRRAPSCWDRFCLSF*IKETSS Trigger: AGATGAGGTTTCCTTTATCAAGAAGCTTAGGCAAAA...CCTGTCCCAGCAAGATGGCGCCCTCCGCTTGACCTCAAGGGAAAGGGTGTTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039601.10 |
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| CDS CCA 90 bp | GGCATTACCTCTCCATCCATCTTGCACACACGGACAGTCATCGCCTaGCCATATTCCAGTGCAATCTGGGAGTTGACCTCTTCTAGAGTA | + |
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Preference number: 5 (lower is better) Translates to: GITSPSILHTRTVIA*PYSSAIWELTSSRV Trigger: TACTCTAGAAGAGGTCAACTCCCAGATTGCACTGGAATATGGCCAGGCGATGACTGTCCGTGTGTGCAAGATGGATGGAGAGGTAATGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS CCA 90 bp | GTGGCATTCTCTCCATCCATCTTGCACACACGGACAGTCATCGCCTaGCCATATTCCAGTGCAATCTGGGAGTTGACCTCTTCTAGAGTA | + |
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Preference number: 5 (lower is better) Translates to: VAFSPSILHTRTVIA*PYSSAIWELTSSRV Trigger: TACTCTAGAAGAGGTCAACTCCCAGATTGCACTGGAATATGGCCAGGCGATGACTGTCCGTGTGTGCAAGATGGATGGAGAGAATGCCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149043.3 |
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| CDS-3UTR CAA 90 bp | AGTTCAAAGGAAAGTAAAGGGCAGAGGAATTTTCCACAATCCGAGGGTCCCAGGACCTCTCCATCCATCTaGCACACACGGACAGTCATC | + |
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Preference number: 5 (lower is better) Translates to: SSKESKGQRNFPQSEGPRTSPSI*HTRTVI Trigger: GATGACTGTCCGTGTGTGCAAGATGGATGGAGAGGT...CCTGGGACCCTCGGATTGTGGAAAATTCCTCTGCCCTTTACTTTCCTTTGAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039601.10 |
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| CDS CCA 72 bp | CCGCCTTCCCGCTCCTGCTTGAGCTGCACGTATCTCTaGATAGCCTTCTTCAGGTCCAGGACCGTGGCATTC | + |
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Preference number: 6 (lower is better) Translates to: PPSRSCLSCTYL*IAFFRSRTVAF Trigger: GAATGCCACGGTCCTGGACCTGAAGAAGGCTATCCAGAGATACGTGCAGCTCAAGCAGGAGCGGGAAGGCGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 ENSMUST00000149043.3 |
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| CDS CAA 72 bp | TTCAGGTCCAGGACCGTGGCATTCTCTCCATCCATCTaGCACACACGGACAGTCATCGCCTGGCCATATTCC | + |
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Preference number: 6 (lower is better) Translates to: FRSRTVAFSPSI*HTRTVIAWPYS Trigger: GGAATATGGCCAGGCGATGACTGTCCGTGTGTGCAAGATGGATGGAGAGAATGCCACGGTCCTGGACCTGAA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149043.3 |
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| CDS CAA 90 bp | ACACGGACAGTCATCGCCTGGCCATATTCCAGTGCAATCTGGGAGTaGACCTCTTCTAGAGTAACCTGGATCGGAAGGTCGCAGAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: TRTVIAWPYSSAIWE*TSSRVTWIGRSQSS Trigger: GCTGCTCTGCGACCTTCCGATCCAGGTTACTCTAGAAGAGGTCAACTCCCAGATTGCACTGGAATATGGCCAGGCGATGACTGTCCGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 ENSMUST00000149043.3 |
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| CDS CAA 90 bp | GTGGCATTCTGTACGACGACCACAGGCATTACCTCTCCATCCATCTaGCACACACGGACAGTCATCGCCTGGCCATATTCCAGTGCAATC | + |
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Preference number: 6 (lower is better) Translates to: VAFCTTTTGITSPSI*HTRTVIAWPYSSAI Trigger: GATTGCACTGGAATATGGCCAGGCGATGACTGTCCGTGTGTGCAAGATGGATGGAGAGGTAATGCCTGTGGTCGTCGTACAGAATGCCAC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 |
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| CDS CCA 72 bp | TCTCCATCCATCTTGCACACACGGACAGTCATCGCCTaGCCATATTCCAGTGCAATCTGGGAGTTGACCTCT | + |
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Preference number: 6 (lower is better) Translates to: SPSILHTRTVIA*PYSSAIWELTS Trigger: AGAGGTCAACTCCCAGATTGCACTGGAATATGGCCAGGCGATGACTGTCCGTGTGTGCAAGATGGATGGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000039601.10 ENSMUST00000121182.2 ENSMUST00000149043.3 |
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