RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SNRK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038145

Ensembl transcript IDs: ENSMUST00000118886.9, ENSMUST00000119215.9, ENSMUST00000120173.9, ENSMUST00000134949.8, ENSMUST00000139181.2, ENSMUST00000146832.8

Found 326 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCAAACCGTGGCTCTAAGGTTCTCGGTGCACAGGCCCTGGGTGGCTaGCAGCGGGGGTTGCTCCTCCCAGGCCTGTGGGCATCACCACGT +
Preference number: 1 (lower is better)
Translates to: SNRGSKVLGAQALGG*QRGLLLPGLWASPR
Trigger: ACGTGGTGATGCCCACAGGCCTGGGAGGAGCAACCCCCGCTGCCAGCCACCCAGGGCCTGTGCACCGAGAACCTTAGAGCCACGGTTTGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 90 bp CTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCAGCTGAAGAGTaGGGAAAGGACCCTGGGCCAGCCGCACCTACCCCACAGGCCGCT +
Preference number: 1 (lower is better)
Translates to: LSCTVVPQNRAAAEE*GKDPGPAAPTPQAA
Trigger: AGCGGCCTGTGGGGTAGGTGCGGCTGGCCCAGGGTCCTTTCCTCACTCTTCAGCTGCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR GCA 90 bp TCCTGCCTCCTCGTCAGAGTGCTGACTTTGCTGCCTGCCCCTGTGTaGACTGTGGCTACTGCAGCAGGCCCTCCGCTTCTCCTCTCCACA +
Preference number: 1 (lower is better)
Translates to: SCLLVRVLTLLPAPV*TVATAAGPPLLLST
Trigger: TGTGGAGAGGAGAAGCGGAGGGCCTGCTGCAGTAGCCACAGTGCACACAGGGGCAGGCAGCAAAGTCAGCACTCTGACGAGGAGGCAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 90 bp AGCGCTCCGCGCTCAGCACGTGGCAGGAAGGCAGCAGTGTGCCACTaGCGGCTCCAAGCACTACCCTTTCCTGAGCAGTTTCTTACCAGC +
Preference number: 1 (lower is better)
Translates to: SAPRSARGRKAAVCH*RLQALPFPEQFLTS
Trigger: GCTGGTAAGAAACTGCTCAGGAAAGGGTAGTGCTTGGAGCCGTCAGTGGCACACTGCTGCCTTCCTGCCACGTGCTGAGCGCGGAGCGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR GCA 90 bp CAGCGGGGGTTGCTCCTCCCAGGCCTGTGGGCATCACCACGTTATTaGTTTGGTTCTGTCTCGGGCACCAGTGTGCCTCAGAGCATGGAG +
Preference number: 1 (lower is better)
Translates to: QRGLLLPGLWASPRY*FGSVSGTSVPQSME
Trigger: CTCCATGCTCTGAGGCACACTGGTGCCCGAGACAGAACCAAAGCAATAACGTGGTGATGCCCACAGGCCTGGGAGGAGCAACCCCCGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 90 bp ACACATGCTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCAGCTaGAGAGTGAGGAAAGGACCCTGGGCCAGCCGCACCTACCCCACA +
Preference number: 1 (lower is better)
Translates to: THAQLHCCPSEQGSS*RVRKGPWASRTYPT
Trigger: TGTGGGGTAGGTGCGGCTGGCCCAGGGTCCTTTCCTCACTCTTCAGCTGCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAGCATGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CCA 90 bp GGGGTTGCTCCTCCCAGGCCTGTGGGCATCACCACGTTATTGCTTTaGTTCTGTCTCGGGCACCAGTGTGCCTCAGAGCATGGAGTTTCC +
Preference number: 1 (lower is better)
Translates to: GVAPPRPVGITTLLL*FCLGHQCASEHGVS
Trigger: GGAAACTCCATGCTCTGAGGCACACTGGTGCCCGAGACAGAACCAAAGCAATAACGTGGTGATGCCCACAGGCCTGGGAGGAGCAACCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR GCA 90 bp AACCTAAAGCAGCAGTCACTGAGCACTGAAGGAAGTGGTGGCCTGTaGCCTGCCCGCTCTGAGACACATGCTCAGCTGCACTGTTGTCCC +
Preference number: 1 (lower is better)
Translates to: NLKQQSLSTEGSGGL*PARSETHAQLHCCP
Trigger: GGGACAACAGTGCAGCTGAGCATGTGTCTCAGAGCGGGCAGGGCACAGGCCACCACTTCCTTCAGTGCTCAGTGACTGCTGCTTTAGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 90 bp GTGGCTACTGCAGCAGGCCCTCCGCTTCTCCTCTCCACACAGGTTTaGAGGAAACCCTGCCTTGTGTCCTGCAGGGGAAACTTACACAGA +
Preference number: 1 (lower is better)
Translates to: VATAAGPPLLLSTQV*RKPCLVSCRGNLHR
Trigger: TCTGTGTAAGTTTCCCCTGCAGGACACAAGGCAGGGTTTCCTTCAAACCTGTGTGGAGAGGAGAAGCGGAGGGCCTGCTGCAGTAGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 90 bp GTGGTGGTTCTGCTCCTTCCCTCTGTGACGACACCCGTGACACTGTaGCGACACCCCGTGACACACAACACATGCACAGACATCCACTTG +
Preference number: 1 (lower is better)
Translates to: VVVLLLPSVTTPVTL*RHPVTHNTCTDIHL
Trigger: CAAGTGGATGTCTGTGCATGTGTTGTGTGTCACGGGGTGTCGTCACAGTGTCACGGGTGTCGTCACAGAGGGAAGGAGCAGAACCACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR GCA 90 bp GGGCATCACCACGTTATTGCTTTGGTTCTGTCTCGGGCACCAGTGTaGCTCAGAGCATGGAGTTTCCCTATCACCGGAGGTCAAGACAGG +
Preference number: 1 (lower is better)
Translates to: GHHHVIALVLSRAPV*LRAWSFPITGGQDR
Trigger: CCTGTCTTGACCTCCGGTGATAGGGAAACTCCATGCTCTGAGGCACACTGGTGCCCGAGACAGAACCAAAGCAATAACGTGGTGATGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CCA 90 bp GGCTCACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTaGCCCTTGGAAGATCCCTGCTTAAGAATTTCAAGCAAATGTGCT +
Preference number: 1 (lower is better)
Translates to: GSHRRGSVSENHAGF*PLEDPCLRISSKCA
Trigger: AGCACATTTGCTTGAAATTCTTAAGCAGGGATCTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTGAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CCA 90 bp GTTATTGCTTTGGTTCTGTCTCGGGCACCAGTGTGCCTCAGAGCATaGAGTTTCCCTATCACCGGAGGTCAAGACAGGAATTTGGGCTTT +
Preference number: 1 (lower is better)
Translates to: VIALVLSRAPVCLRA*SFPITGGQDRNLGF
Trigger: AAAGCCCAAATTCCTGTCTTGACCTCCGGTGATAGGGAAACTCCATGCTCTGAGGCACACTGGTGCCCGAGACAGAACCAAAGCAATAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CCA 90 bp CCCCGTGACACACAACACATGCACAGACATCCACTTGTCAACAAATaGGTAAGACAGCACTCAACAGACATTGTGTACCCAGAGGGTCAC +
Preference number: 1 (lower is better)
Translates to: PRDTQHMHRHPLVNK*VRQHSTDIVYPEGH
Trigger: GTGACCCTCTGGGTACACAATGTCTGTTGAGTGCTGTCTTACCCATTTGTTGACAAGTGGATGTCTGTGCATGTGTTGTGTGTCACGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CCA 90 bp TCAGAGCATGGAGTTTCCCTATCACCGGAGGTCAAGACAGGAATTTaGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAG +
Preference number: 1 (lower is better)
Translates to: SEHGVSLSPEVKTGI*AFHKETKAFSLQVK
Trigger: CTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTGTCTTGACCTCCGGTGATAGGGAAACTCCATGCTCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR GCA 90 bp TGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGTaGAGAACATGGATTTCTAAGCGCTCCATTTACGTTGGGTTCCAG +
Preference number: 1 (lower is better)
Translates to: WAFHKETKAFSLQVK*RTWISKRSIYVGFQ
Trigger: CTGGAACCCAACGTAAATGGAGCGCTTAGAAATCCATGTTCTGCACTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 90 bp TCCTGGGTAATTCTATGGGTAAGCTGCCTCTCAAAGCTAAGGAGCTaGCCTCACCTAACACAAACAAGACAATCTCTGTCAGTGAAAAGA +
Preference number: 1 (lower is better)
Translates to: SWVILWVSCLSKLRS*PHLTQTRQSLSVKR
Trigger: TCTTTTCACTGACAGAGATTGTCTTGTTTGTGTTAGGTGAGGTCAGCTCCTTAGCTTTGAGAGGCAGCTTACCCATAGAATTACCCAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 90 bp TTGTTCTGTCAGACAGACATACACACTCTAAGTAGAGTTAAGACTTaGGTTCACCTCATTGCCTCACAGAAGATTGTCTCCTGGGTAATT +
Preference number: 1 (lower is better)
Translates to: LFCQTDIHTLSRVKT*VHLIASQKIVSWVI
Trigger: AATTACCCAGGAGACAATCTTCTGTGAGGCAATGAGGTGAACTCAAGTCTTAACTCTACTTAGAGTGTGTATGTCTGTCTGACAGAACAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp GCCCGCTCTGAGACACATGCTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCGTGAGGAAAGGACCCTaGGCCAGCCGCACCTACCCC +
Preference number: 2 (lower is better)
Translates to: ARSETHAQLHCCPSEQGSVRKGP*ASRTYP
Trigger: GGGGTAGGTGCGGCTGGCCCAGGGTCCTTTCCTCAC...GCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAGCATGTGTCTCAGAGCGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR TCA 90 bp CACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGGCAGCAGTGTGCCACTaGCGGCTCCAAGCACTACCC +
Preference number: 2 (lower is better)
Translates to: HTDVAPSLRTTLVSGPWKAAVCH*RLQALP
Trigger: GGGTAGTGCTTGGAGCCGTCAGTGGCACACTGCTGC...CTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR GCA 90 bp CCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGCATCTGGCTGGCAGCGGGGGTTaGTCCTCCCAGGCCTGTGGG +
Preference number: 2 (lower is better)
Translates to: PLKHCFQSLGHRVKTQHLAGSGG*SSQACG
Trigger: CCCACAGGCCTGGGAGGAGCAACCCCCGCTGCCAGC...CAGATGCTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp AGGCCACCTCACCACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTCTCCTCCCAGGCCTGTaGGCATCACCACGTTATTGC +
Preference number: 2 (lower is better)
Translates to: RPPHHQAPEPPPQDVLPPLLPGL*ASPRYC
Trigger: GCAATAACGTGGTGATGCCCACAGGCCTGGGAGGAG...AGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGTGGTGAGGTGGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CAA 90 bp GGGGGTTGCTCCTCCCAGGCCTGTGGGCATCACCACGTTATTGCTTaGGTTCTGTCTCGGGCACCAGTGTGCCTCAGAGCATGGAGTTTC +
Preference number: 2 (lower is better)
Translates to: GGCSSQACGHHHVIA*VLSRAPVCLRAWSF
Trigger: GAAACTCCATGCTCTGAGGCACACTGGTGCCCGAGACAGAACCAAAGCAATAACGTGGTGATGCCCACAGGCCTGGGAGGAGCAACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR TCA 90 bp ACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGATCTCCTCGTCAGAGTGCTaGCTTTGCTGCCTGCCCCTG +
Preference number: 2 (lower is better)
Translates to: TDVAPSLRTTLVSGPWKISSSEC*LCCLPL
Trigger: CAGGGGCAGGCAGCAAAGTCAGCACTCTGACGAGGA...GATCTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR GCA 90 bp AGGCCACCTCACCACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTTCTCGGGCACCAGTGTaGCTCAGAGCATGGAGTTTC +
Preference number: 2 (lower is better)
Translates to: RPPHHQAPEPPPQDVLPPSRAPV*LRAWSF
Trigger: GAAACTCCATGCTCTGAGGCACACTGGTGCCCGAGA...AGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGTGGTGAGGTGGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp AGGCCACCTCACCACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTGTGTGCCTCAGAGCATaGAGTTTCCCTATCACCGGA +
Preference number: 2 (lower is better)
Translates to: RPPHHQAPEPPPQDVLPPVCLRA*SFPITG
Trigger: TCCGGTGATAGGGAAACTCCATGCTCTGAGGCACAC...AGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGTGGTGAGGTGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CAA 90 bp TGTGGCTACTGCAGCAGGCCCTCCGCTTCTCCTCTCCACACAGGTTaGAAGGAAACCCTGCCTTGTGTCCTGCAGGGGAAACTTACACAG +
Preference number: 2 (lower is better)
Translates to: CGYCSRPSASPLHTG*KETLPCVLQGKLTQ
Trigger: CTGTGTAAGTTTCCCCTGCAGGACACAAGGCAGGGTTTCCTTCAAACCTGTGTGGAGAGGAGAAGCGGAGGGCCTGCTGCAGTAGCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR TCA 90 bp AGGCCACCTCACCACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTTCACGTCAGAACAGATaGAGTGAGCGCGCTTTACAG +
Preference number: 2 (lower is better)
Translates to: RPPHHQAPEPPPQDVLPPSRQNR*SERALQ
Trigger: CTGTAAAGCGCGCTCACTTCATCTGTTCTGACGTGA...AGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGTGGTGAGGTGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR GCA 90 bp GTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGGCTCCGGAAGTGGTGGCCTGTaGCCTGCCCGCTCTGAGACA +
Preference number: 2 (lower is better)
Translates to: VYCNAPIDISPGSHRRGSGSGGL*PARSET
Trigger: TGTCTCAGAGCGGGCAGGGCACAGGCCACCACTTCC...GGAGCCACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp CAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGGTGCACAGGCCCACCACGTTATTGCTTTaGTTCTGTCTCGGGCACCAG +
Preference number: 2 (lower is better)
Translates to: QTGVGAQTVALRFSVHRPTTLLL*FCLGHQ
Trigger: CTGGTGCCCGAGACAGAACCAAAGCAATAACGTGGT...GGGCCTGTGCACCGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR TCA 90 bp CCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGTCGTCAGCCAAATGCTGCCATaGAATGGGAGAAACCTGAGG +
Preference number: 2 (lower is better)
Translates to: PRSGRRPASGDSYQSGVVSQMLP*NGRNLR
Trigger: CCTCAGGTTTCTCCCATTTCATGGCAGCATTTGGCT...GACGACTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR GCA 90 bp CCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGCATCTGGCTGACTTTGCTGCCTaGCCCTGTGTGCACTGTGGC +
Preference number: 2 (lower is better)
Translates to: PLKHCFQSLGHRVKTQHLADFAA*PCVHCG
Trigger: GCCACAGTGCACACAGGGGCAGGCAGCAAAGTCAGC...CAGATGCTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp ACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGATCGTGTGCCTCAGAGCATaGAGTTTCCCTATCACCGGA +
Preference number: 2 (lower is better)
Translates to: TDVAPSLRTTLVSGPWKIVCLRA*SFPITG
Trigger: TCCGGTGATAGGGAAACTCCATGCTCTGAGGCACAC...GATCTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp GCGACAGTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTCCCCTGTGTGCACTGTaGCTACTGCAGCAGGCCCTC +
Preference number: 2 (lower is better)
Translates to: ATVYCNAPIDISPGSHRRPLCAL*LLQQAL
Trigger: GAGGGCCTGCTGCAGTAGCCACAGTGCACACAGGGG...ACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAACTGTCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR TCA 90 bp AACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGACTTTGCTGCCTTCACGTCAGAACAGATaGAGTGAGCGCGCTTTACAG +
Preference number: 2 (lower is better)
Translates to: NHHLRMSCLLVRVLTLLPSRQNR*SERALQ
Trigger: CTGTAAAGCGCGCTCACTTCATCTGTTCTGACGTGA...AGGCAGCAAAGTCAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR GCA 90 bp GTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGGCTCCTCTCGGGCACCAGTGTaGCTCAGAGCATGGAGTTTC +
Preference number: 2 (lower is better)
Translates to: VYCNAPIDISPGSHRRGSSRAPV*LRAWSF
Trigger: GAAACTCCATGCTCTGAGGCACACTGGTGCCCGAGA...GGAGCCACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR TCA 90 bp ACAGACATTGTGTACCCAGAGGGTCACCAACCACACACAACTAATAAGGCTATGGCAGCAGCTGAAGAGTaGGGAAAGGACCCTGGGCCA +
Preference number: 2 (lower is better)
Translates to: TDIVYPEGHQPHTTNKAMAAAEE*GKDPGP
Trigger: TGGCCCAGGGTCCTTTCCTCACTCTTCAGCTGCTGC...CATAGCCTTATTAGTTGTGTGTGGTTGGTGACCCTCTGGGTACACAATGTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR GCA 90 bp ACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGATCCATGCACAAAGACCATaGATTGTCACGTCAGAACAG +
Preference number: 2 (lower is better)
Translates to: TDVAPSLRTTLVSGPWKIHAQRP*IVTSEQ
Trigger: CTGTTCTGACGTGACAATGCATGGTCTTTGTGCATG...GATCTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp ACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGATCTCCTGGGTAATTCTATaGGTAAGCTGCCTCTCAAAG +
Preference number: 2 (lower is better)
Translates to: TDVAPSLRTTLVSGPWKISWVIL*VSCLSK
Trigger: CTTTGAGAGGCAGCTTACCCATAGAATTACCCAGGA...GATCTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR TCA 90 bp ACAGACATTGTGTACCCAGAGGGTCACCAACCACACACAACTAATAAGGCTATGGCAGTCACTGAGCACTaGAGGAAGTGGTGGCCTGTG +
Preference number: 2 (lower is better)
Translates to: TDIVYPEGHQPHTTNKAMAVTEH*RKWWPV
Trigger: CACAGGCCACCACTTCCTTCAGTGCTCAGTGACTGC...CATAGCCTTATTAGTTGTGTGTGGTTGGTGACCCTCTGGGTACACAATGTCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp GTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGGCTCCCTGCTTTCAATCCCTTaGGCACCGTGTGAAAACCCA +
Preference number: 2 (lower is better)
Translates to: VYCNAPIDISPGSHRRGSLLSIP*APCENP
Trigger: TGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAG...GGAGCCACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CAA 90 bp GCCGCTCAGAGGCTGGCCGTGACCACAGAAGAGTATGTACATTACTaGGGAAACAGCTGCGACAGTTTATTGCAATGCCCCTATAGACAT +
Preference number: 2 (lower is better)
Translates to: AAQRLAVTTEEYVHY*GNSCDSLLQCPYRH
Trigger: ATGTCTATAGGGGCATTGCAATAAACTGTCGCAGCTGTTTCCCAAGTAATGTACATACTCTTCTGTGGTCACGGCCAGCCTCTGAGCGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp AACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGACTTTGCTGCCTGTTAAGTGCAGAACATaGATTTCTAAGCGCTCCATT +
Preference number: 2 (lower is better)
Translates to: NHHLRMSCLLVRVLTLLPVKCRT*ISKRSI
Trigger: AATGGAGCGCTTAGAAATCCATGTTCTGCACTTAAC...AGGCAGCAAAGTCAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp CACAGGCCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGTCCTGGGTAATTCTATaGGTAAGCTGCCTCTCAAAG +
Preference number: 2 (lower is better)
Translates to: HRPLKHCFQSLGHRVKTQSWVIL*VSCLSK
Trigger: CTTTGAGAGGCAGCTTACCCATAGAATTACCCAGGA...CTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGGCCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR GCA 90 bp CCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGCATCTGCATGCACAAAGACCATaGATTGTCACGTCAGAACAG +
Preference number: 2 (lower is better)
Translates to: PLKHCFQSLGHRVKTQHLHAQRP*IVTSEQ
Trigger: CTGTTCTGACGTGACAATGCATGGTCTTTGTGCATG...CAGATGCTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR GCA 90 bp GACCAATTAGCTGACAAGTTTGTGTTCTCAGCACATACCAACTCTGGCTCTAGGGCATCACCACGTTATTaGTTTGGTTCTGTCTCGGGC +
Preference number: 2 (lower is better)
Translates to: DQLADKFVFSAHTNSGSRASPRY*FGSVSG
Trigger: GCCCGAGACAGAACCAAAGCAATAACGTGGTGATGC...CCTAGAGCCAGAGTTGGTATGTGCTGAGAACACAAACTTGTCAGCTAATTGGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp GACCAATTAGCTGACAAGTTTGTGTTCTCAGCACATACCAACTCTGGCTCTAGGAATGCTGCCATGAAATaGGAGAAACCTGAGGCCACC +
Preference number: 2 (lower is better)
Translates to: DQLADKFVFSAHTNSGSRNAAMK*EKPEAT
Trigger: GGTGGCCTCAGGTTTCTCCCATTTCATGGCAGCATT...CCTAGAGCCAGAGTTGGTATGTGCTGAGAACACAAACTTGTCAGCTAATTGGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR GCA 90 bp TTATTGGATTATTTCCCATCTGTCACATACCTGTCAATGTTCACACAAGGAAAAGGAAGTGGTGGCCTGTaGCCTGCCCGCTCTGAGACA +
Preference number: 2 (lower is better)
Translates to: LLDYFPSVTYLSMFTQGKGSGGL*PARSET
Trigger: TGTCTCAGAGCGGGCAGGGCACAGGCCACCACTTCC...TTTTCCTTGTGTGAACATTGACAGGTATGTGACAGATGGGAAATAATCCAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp GTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGGCTCCCTGCTTTCACACTATTaGTTAAGACAAACAGGTGTG +
Preference number: 2 (lower is better)
Translates to: VYCNAPIDISPGSHRRGSLLSHY*LRQTGV
Trigger: CACACCTGTTTGTCTTAACCAATAGTGTGAAAGCAG...GGAGCCACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR TCA 90 bp TTATTGGATTATTTCCCATCTGTCACATACCTGTCAATGTTCACACAAGGAAAAGCAGCAGCTGAAGAGTaGGGAAAGGACCCTGGGCCA +
Preference number: 2 (lower is better)
Translates to: LLDYFPSVTYLSMFTQGKAAAEE*GKDPGP
Trigger: TGGCCCAGGGTCCTTTCCTCACTCTTCAGCTGCTGC...TTTTCCTTGTGTGAACATTGACAGGTATGTGACAGATGGGAAATAATCCAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp CCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGCATCTGAACACAATTTCATCCTaGTCATCCACACTGAAAATC +
Preference number: 2 (lower is better)
Translates to: PLKHCFQSLGHRVKTQHLNTISS*SSTLKI
Trigger: GATTTTCAGTGTGGATGACCAGGATGAAATTGTGTT...CAGATGCTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp TTATTGGATTATTTCCCATCTGTCACATACCTGTCAATGTTCACACAAGGAAAACTGCTTTCACACTATTaGTTAAGACAAACAGGTGTG +
Preference number: 2 (lower is better)
Translates to: LLDYFPSVTYLSMFTQGKLLSHY*LRQTGV
Trigger: CACACCTGTTTGTCTTAACCAATAGTGTGAAAGCAG...TTTTCCTTGTGTGAACATTGACAGGTATGTGACAGATGGGAAATAATCCAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CCA 90 bp TTATTGGATTATTTCCCATCTGTCACATACCTGTCAATGTTCACACAAGGAAAAAGTATGTACATTACTTaGGAAACAGCTGCGACAGTT +
Preference number: 2 (lower is better)
Translates to: LLDYFPSVTYLSMFTQGKSMYIT*ETAATV
Trigger: AACTGTCGCAGCTGTTTCCCAAGTAATGTACATACT...TTTTCCTTGTGTGAACATTGACAGGTATGTGACAGATGGGAAATAATCCAATAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR GCA 72 bp GTCCTGCCTCCTCGTCAGAGTGCTGACTTTGCTGCCTaGCCCTGTGTGCACTGTGGCTACTGCAGCAGGCCC +
Preference number: 3 (lower is better)
Translates to: VLPPRQSADFAA*PCVHCGYCSRP
Trigger: GGGCCTGCTGCAGTAGCCACAGTGCACACAGGGGCAGGCAGCAAAGTCAGCACTCTGACGAGGAGGCAGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 72 bp ACTGTTGTCCCTCAGAACAGGGCAGCAGCTGAAGAGTaGGGAAAGGACCCTGGGCCAGCCGCACCTACCCCA +
Preference number: 3 (lower is better)
Translates to: TVVPQNRAAAEE*GKDPGPAAPTP
Trigger: TGGGGTAGGTGCGGCTGGCCCAGGGTCCTTTCCTCACTCTTCAGCTGCTGCCCTGTTCTGAGGGACAACAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 72 bp ACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTaGCTTTGCTGCCTGCCCCTGTGTGCACTGTGGCTA +
Preference number: 3 (lower is better)
Translates to: TTSGCPASSSEC*LCCLPLCALWL
Trigger: TAGCCACAGTGCACACAGGGGCAGGCAGCAAAGTCAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 72 bp CGCTCAGCACGTGGCAGGAAGGCAGCAGTGTGCCACTaGCGGCTCCAAGCACTACCCTTTCCTGAGCAGTTT +
Preference number: 3 (lower is better)
Translates to: RSARGRKAAVCH*RLQALPFPEQF
Trigger: AAACTGCTCAGGAAAGGGTAGTGCTTGGAGCCGTCAGTGGCACACTGCTGCCTTCCTGCCACGTGCTGAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR GCA 72 bp ACCACCAAGCTCCTGAACCACCACCTCAGGATGTCCTaGCTCCTCGTCAGAGTGCTGACTTTGCTGCCTGCC +
Preference number: 3 (lower is better)
Translates to: TTKLLNHHLRMS*LLVRVLTLLPA
Trigger: GGCAGGCAGCAAAGTCAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR GCA 72 bp GGCCAGCCGCACCTACCCCACAGGCCGCTTAAACACTaGTTTCAATCCCTTGGGCACCGTGTGAAAACCCAG +
Preference number: 3 (lower is better)
Translates to: GQPHLPHRPLKH*FQSLGHRVKTQ
Trigger: CTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGGCCTGTGGGGTAGGTGCGGCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CAA 90 bp AGGCCACCTCACCACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTGAAGGAAACCCTGCCTaGTGTCCTGCAGGGGAAACT +
Preference number: 3 (lower is better)
Translates to: RPPHHQAPEPPPQDVLPPEGNPA*CPAGET
Trigger: AGTTTCCCCTGCAGGACACAAGGCAGGGTTTCCTTC...AGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGTGGTGAGGTGGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 72 bp CTGCTCCTTCCCTCTGTGACGACACCCGTGACACTGTaGCGACACCCCGTGACACACAACACATGCACAGAC +
Preference number: 3 (lower is better)
Translates to: LLLPSVTTPVTL*RHPVTHNTCTD
Trigger: GTCTGTGCATGTGTTGTGTGTCACGGGGTGTCGTCACAGTGTCACGGGTGTCGTCACAGAGGGAAGGAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR GCA 72 bp TTGCTCCTCCCAGGCCTGTGGGCATCACCACGTTATTaGTTTGGTTCTGTCTCGGGCACCAGTGTGCCTCAG +
Preference number: 3 (lower is better)
Translates to: LLLPGLWASPRY*FGSVSGTSVPQ
Trigger: CTGAGGCACACTGGTGCCCGAGACAGAACCAAAGCAATAACGTGGTGATGCCCACAGGCCTGGGAGGAGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CCA 72 bp CCTCCCAGGCCTGTGGGCATCACCACGTTATTGCTTTaGTTCTGTCTCGGGCACCAGTGTGCCTCAGAGCAT +
Preference number: 3 (lower is better)
Translates to: PPRPVGITTLLL*FCLGHQCASEH
Trigger: ATGCTCTGAGGCACACTGGTGCCCGAGACAGAACCAAAGCAATAACGTGGTGATGCCCACAGGCCTGGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CAA 90 bp CCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGTCGTCCACCACGTTATTGCTTaGGTTCTGTCTCGGGCACCA +
Preference number: 3 (lower is better)
Translates to: PRSGRRPASGDSYQSGVVHHVIA*VLSRAP
Trigger: TGGTGCCCGAGACAGAACCAAAGCAATAACGTGGTG...GACGACTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CCA 72 bp CCGCTCTTCACAGCTGAGCCAAATGCTGCCATGAAATaGGAGAAACCTGAGGCCACCTCACCACCAAGCTCC +
Preference number: 3 (lower is better)
Translates to: PLFTAEPNAAMK*EKPEATSPPSS
Trigger: GGAGCTTGGTGGTGAGGTGGCCTCAGGTTTCTCCCATTTCATGGCAGCATTTGGCTCAGCTGTGAAGAGCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CAA 90 bp AACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGACTTTGCTGCCTGGCATCACCACGTTATaGCTTTGGTTCTGTCTCGGG +
Preference number: 3 (lower is better)
Translates to: NHHLRMSCLLVRVLTLLPGITTL*LWFCLG
Trigger: CCCGAGACAGAACCAAAGCAATAACGTGGTGATGCC...AGGCAGCAAAGTCAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CAA 90 bp AACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGACTTTGCTGCCTCCTCTCCACACAGGTTaGAAGGAAACCCTGCCTTGT +
Preference number: 3 (lower is better)
Translates to: NHHLRMSCLLVRVLTLLPPLHTG*KETLPC
Trigger: ACAAGGCAGGGTTTCCTTCAAACCTGTGTGGAGAGG...AGGCAGCAAAGTCAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CAA 90 bp CACAGGCCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGGAAGGAAACCCTGCCTaGTGTCCTGCAGGGGAAACT +
Preference number: 3 (lower is better)
Translates to: HRPLKHCFQSLGHRVKTQEGNPA*CPAGET
Trigger: AGTTTCCCCTGCAGGACACAAGGCAGGGTTTCCTTC...CTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGGCCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR GCA 72 bp CACGTTATTGCTTTGGTTCTGTCTCGGGCACCAGTGTaGCTCAGAGCATGGAGTTTCCCTATCACCGGAGGT +
Preference number: 3 (lower is better)
Translates to: HVIALVLSRAPV*LRAWSFPITGG
Trigger: ACCTCCGGTGATAGGGAAACTCCATGCTCTGAGGCACACTGGTGCCCGAGACAGAACCAAAGCAATAACGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CCA 72 bp TTGGTTCTGTCTCGGGCACCAGTGTGCCTCAGAGCATaGAGTTTCCCTATCACCGGAGGTCAAGACAGGAAT +
Preference number: 3 (lower is better)
Translates to: LVLSRAPVCLRA*SFPITGGQDRN
Trigger: ATTCCTGTCTTGACCTCCGGTGATAGGGAAACTCCATGCTCTGAGGCACACTGGTGCCCGAGACAGAACCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CAA 90 bp TCTCCTGGCTCACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGGGTCAAGACAGGAATTaGGGCTTTTCACAAGGAAAC +
Preference number: 3 (lower is better)
Translates to: SPGSHRRGSVSENHAGFWGQDRN*GFSQGN
Trigger: GTTTCCTTGTGAAAAGCCCAAATTCCTGTCTTGACC...CCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTGAGCCAGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 72 bp CGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTaGAAACCCAGCATCTGGGCTTCCCAAGATCAGGGA +
Preference number: 3 (lower is better)
Translates to: RLNTAFNPLGTV*KPSIWASQDQG
Trigger: TCCCTGATCTTGGGAAGCCCAGATGCTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CCA 72 bp AGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTaGCCCTTGGAAGATCCCTGCTTAAGAATTTCAAGC +
Preference number: 3 (lower is better)
Translates to: RRGSVSENHAGF*PLEDPCLRISS
Trigger: GCTTGAAATTCTTAAGCAGGGATCTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CAA 90 bp ACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGATCGGTCAAGACAGGAATTaGGGCTTTTCACAAGGAAAC +
Preference number: 3 (lower is better)
Translates to: TDVAPSLRTTLVSGPWKIGQDRN*GFSQGN
Trigger: GTTTCCTTGTGAAAAGCCCAAATTCCTGTCTTGACC...GATCTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CAA 90 bp AGGCCACCTCACCACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTACTGCTTTCACACTATaGGTTAAGACAAACAGGTGT +
Preference number: 3 (lower is better)
Translates to: RPPHHQAPEPPPQDVLPPTAFTL*VKTNRC
Trigger: ACACCTGTTTGTCTTAACCAATAGTGTGAAAGCAGT...AGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGTGGTGAGGTGGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CAA 90 bp ACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGATCCTTGAGTTCACCTCATaGCCTCACAGAAGATTGTCT +
Preference number: 3 (lower is better)
Translates to: TDVAPSLRTTLVSGPWKILEFTS*PHRRLS
Trigger: AGACAATCTTCTGTGAGGCAATGAGGTGAACTCAAG...GATCTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CAA 90 bp TATTGGTTAAGACAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGCACCACGTTATTGCTTaGGTTCTGTCTCGGGCACCA +
Preference number: 3 (lower is better)
Translates to: YWLRQTGVGAQTVALRFSHHVIA*VLSRAP
Trigger: TGGTGCCCGAGACAGAACCAAAGCAATAACGTGGTG...CGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTGTCTTAACCAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CAA 90 bp GTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGGCTCCCTTGAGTTCACCTCATaGCCTCACAGAAGATTGTCT +
Preference number: 3 (lower is better)
Translates to: VYCNAPIDISPGSHRRGSLEFTS*PHRRLS
Trigger: AGACAATCTTCTGTGAGGCAATGAGGTGAACTCAAG...GGAGCCACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR GCA 72 bp CATTACTTGGGAAACAGCTGCGACAGTTTATTGCAATaGCCCTATAGACATCTCTCCTGGCTCACACAGACG +
Preference number: 3 (lower is better)
Translates to: HYLGNSCDSLLQ*PYRHLSWLTQT
Trigger: CGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAACTGTCGCAGCTGTTTCCCAAGTAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR GCA 72 bp AGCTCTCAACTATGTGAATGTCACACTGAATGGGACTaGAGCTTAAAGCACAAGCAGTTAGCTAGCTCTAGG +
Preference number: 3 (lower is better)
Translates to: SSQLCECHTEWD*SLKHKQLASSR
Trigger: CCTAGAGCTAGCTAACTGCTTGTGCTTTAAGCTGCAGTCCCATTCAGTGTGACATTCACATAGTTGAGAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CCA 72 bp ACGAAAGCATTTTCCCTCCAGGTTAAGTGCAGAACATaGATTTCTAAGCGCTCCATTTACGTTGGGTTCCAG +
Preference number: 3 (lower is better)
Translates to: TKAFSLQVKCRT*ISKRSIYVGFQ
Trigger: CTGGAACCCAACGTAAATGGAGCGCTTAGAAATCCATGTTCTGCACTTAACCTGGAGGGAAAATGCTTTCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 72 bp ATTCTATGGGTAAGCTGCCTCTCAAAGCTAAGGAGCTaGCCTCACCTAACACAAACAAGACAATCTCTGTCA +
Preference number: 3 (lower is better)
Translates to: ILWVSCLSKLRS*PHLTQTRQSLS
Trigger: TGACAGAGATTGTCTTGTTTGTGTTAGGTGAGGTCAGCTCCTTAGCTTTGAGAGGCAGCTTACCCATAGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CCA 72 bp ACACAACACATGCACAGACATCCACTTGTCAACAAATaGGTAAGACAGCACTCAACAGACATTGTGTACCCA +
Preference number: 3 (lower is better)
Translates to: TQHMHRHPLVNK*VRQHSTDIVYP
Trigger: TGGGTACACAATGTCTGTTGAGTGCTGTCTTACCCATTTGTTGACAAGTGGATGTCTGTGCATGTGTTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 72 bp CAGACAGACATACACACTCTAAGTAGAGTTAAGACTTaGGTTCACCTCATTGCCTCACAGAAGATTGTCTCC +
Preference number: 3 (lower is better)
Translates to: QTDIHTLSRVKT*VHLIASQKIVS
Trigger: GGAGACAATCTTCTGTGAGGCAATGAGGTGAACTCAAGTCTTAACTCTACTTAGAGTGTGTATGTCTGTCTG
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR-3UTR CAA 90 bp TTATTGGATTATTTCCCATCTGTCACATACCTGTCAATGTTCACACAAGGAAAACCTCTCCACACAGGTTaGAAGGAAACCCTGCCTTGT +
Preference number: 3 (lower is better)
Translates to: LLDYFPSVTYLSMFTQGKPLHTG*KETLPC
Trigger: ACAAGGCAGGGTTTCCTTCAAACCTGTGTGGAGAGG...TTTTCCTTGTGTGAACATTGACAGGTATGTGACAGATGGGAAATAATCCAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR TCA 72 bp TTTTACTTAGTAAAGTCAGGTTACACTGTGAAGTTCTaGGTAATATACACTAACCTAAAGCAGCAGTCACTG +
Preference number: 3 (lower is better)
Translates to: FYLVKSGYTVKF*VIYTNLKQQSL
Trigger: CAGTGACTGCTGCTTTAGGTTAGTGTATATTACTCAGAACTTCACAGTGTAACCTGACTTTACTAAGTAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CCA 72 bp CATTTACGTTGGGTTCCAGATAACACAATTTCATCCTaGTCATCCACACTGAAAATCATGAATGTAAAATCA +
Preference number: 3 (lower is better)
Translates to: HLRWVPDNTISS*SSTLKIMNVKS
Trigger: TGATTTTACATTCATGATTTTCAGTGTGGATGACCAGGATGAAATTGTGTTATCTGGAACCCAACGTAAATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp GCCCGCTCTGAGACACATGCTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCCGGCGCAGCACCACCTaGGTGGACAGGGACACAGGC +
Preference number: 4 (lower is better)
Translates to: ARSETHAQLHCCPSEQGSRRSTT*VDRDTG
Trigger: GCCTGTGTCCCTGTCCACGCAGGTGGTGCTGCGCCG...GCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAGCATGTGTCTCAGAGCGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp ACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGCCACCACCCGTGCCCTaGTCACCCGGGCTGGCCTTG +
Preference number: 4 (lower is better)
Translates to: TKLLNHHLRMSCLLVRVLPPPVP*SPGLAL
Trigger: CAAGGCCAGCCCGGGTGAGCAGGGCACGGGTGGTGG...CAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp CACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGCCACCACCCGTGCCCTaGTCACCCGGGCTGGCCTTG +
Preference number: 4 (lower is better)
Translates to: HTDVAPSLRTTLVSGPWKPPPVP*SPGLAL
Trigger: CAAGGCCAGCCCGGGTGAGCAGGGCACGGGTGGTGG...CTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp GCCCGCTCTGAGACACATGCTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCAGCAGCTGGCGGGGCTaGAGGCGCAGAGCAGCCCTT +
Preference number: 4 (lower is better)
Translates to: ARSETHAQLHCCPSEQGSSSWRG*RRRAAL
Trigger: AAGGGCTGCTCTGCGCCTCCAGCCCCGCCAGCTGCT...GCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAGCATGTGTCTCAGAGCGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp TCTCCTGGCTCACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCGGCGCAGCACCACCTaGGTGGACAGGGACACAGGC +
Preference number: 4 (lower is better)
Translates to: SPGSHRRGSVSENHAGFWRRSTT*VDRDTG
Trigger: GCCTGTGTCCCTGTCCACGCAGGTGGTGCTGCGCCG...CCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTGAGCCAGGAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGGCCCTCGCTGCCTGGTaGCCCCTCACTGCTGTCACG +
Preference number: 4 (lower is better)
Translates to: HTDVAPSLRTTLVSGPWKALAAW*PLTAVT
Trigger: CGTGACAGCAGTGAGGGGCCACCAGGCAGCGAGGGC...CTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGGTGCACAGGCCCATCGCCCTCGCTGCCTaGTGGCCCCTCACTGCTGTC +
Preference number: 4 (lower is better)
Translates to: QTGVGAQTVALRFSVHRPIALAA*WPLTAV
Trigger: GACAGCAGTGAGGGGCCACCAGGCAGCGAGGGCGAT...GGGCCTGTGCACCGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp ACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGATCCCACCAGAGCCTCCCTaGCTGCCACCACCCGTGCCC +
Preference number: 4 (lower is better)
Translates to: TDVAPSLRTTLVSGPWKIPPEPP*LPPPVP
Trigger: GGGCACGGGTGGTGGCAGCCAGGGAGGCTCTGGTGG...GATCTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GCCCGCTCTGAGACACATGCTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCACGTCAGGCGATTGGTaGCCGATGGCTTCCGGCGCA +
Preference number: 4 (lower is better)
Translates to: ARSETHAQLHCCPSEQGSTSGDW*PMASGA
Trigger: TGCGCCGGAAGCCATCGGTCACCAATCGCCTGACGT...GCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAGCATGTGTCTCAGAGCGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp GCCCGCTCTGAGACACATGCTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCGCGATTGGTGACCGATaGCTTCCGGCGCAGCACCAC +
Preference number: 4 (lower is better)
Translates to: ARSETHAQLHCCPSEQGSAIGDR*LPAQHH
Trigger: GTGGTGCTGCGCCGGAAGCCATCGGTCACCAATCGC...GCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAGCATGTGTCTCAGAGCGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGTCGTCCTGCTAGGCTTGCTCTaGCCGCCACCATCGCCCTCG +
Preference number: 4 (lower is better)
Translates to: PRSGRRPASGDSYQSGVVLLGLL*PPPSPS
Trigger: CGAGGGCGATGGTGGCGGCCAGAGCAAGCCTAGCAG...GACGACTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp AACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGACTTTGCTGCCTAGCAGCTGGCGGGGCTaGAGGCGCAGAGCAGCCCTT +
Preference number: 4 (lower is better)
Translates to: NHHLRMSCLLVRVLTLLPSSWRG*RRRAAL
Trigger: AAGGGCTGCTCTGCGCCTCCAGCCCCGCCAGCTGCT...AGGCAGCAAAGTCAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp TCTCCTGGCTCACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGACGTCAGGCGATTGGTaGCCGATGGCTTCCGGCGCA +
Preference number: 4 (lower is better)
Translates to: SPGSHRRGSVSENHAGFWTSGDW*PMASGA
Trigger: TGCGCCGGAAGCCATCGGTCACCAATCGCCTGACGT...CCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTGAGCCAGGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGGTGCACAGGCCCGCAGCACCACCTGCGTaGACAGGGACACAGGCTTCT +
Preference number: 4 (lower is better)
Translates to: QTGVGAQTVALRFSVHRPAAPPA*TGTQAS
Trigger: AGAAGCCTGTGTCCCTGTCCACGCAGGTGGTGCTGC...GGGCCTGTGCACCGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp GCTTCCCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGAGAGGGGCTGGGGCCTaGGGCGCTGATGCACATCTT +
Preference number: 4 (lower is better)
Translates to: ASQDQGGGLPQEIAISPERGAGA*GADAHL
Trigger: AAGATGTGCATCAGCGCCCCAGGCCCCAGCCCCTCT...CTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGGGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GCCCGCTCTGAGACACATGCTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCCCTCGAAGATCTGGTTaGGCACTGGGGCACTCTTGC +
Preference number: 4 (lower is better)
Translates to: ARSETHAQLHCCPSEQGSPRRSG*ALGHSC
Trigger: GCAAGAGTGCCCCAGTGCTCAACCAGATCTTCGAGG...GCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAGCATGTGTCTCAGAGCGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp CACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGGCCCTAGCAGGAGACTaGGGGACTGTGGCATGTGAC +
Preference number: 4 (lower is better)
Translates to: HTDVAPSLRTTLVSGPWKALAGD*GTVACD
Trigger: GTCACATGCCACAGTCCCGCAGTCTCCTGCTAGGGC...CTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp CACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGGCTCTGCACAAGCTCTaGACCACGTGGAGCGGCAGA +
Preference number: 4 (lower is better)
Translates to: HTDVAPSLRTTLVSGPWKALHKL*TTWSGR
Trigger: TCTGCCGCTCCACGTGGTGCAGAGCTTGTGCAGAGC...CTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGGTGCACAGGCCCGATGGGTCCACTCCCTaGAGCCAAGGGTGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: QTGVGAQTVALRFSVHRPDGSTP*SQGWLS
Trigger: TGAAAGCCACCCTTGGCTCCAGGGAGTGGACCCATC...GGGCCTGTGCACCGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp ACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGGAGACTGCGGGACTGTaGCATGTGACAGAGGGGTGG +
Preference number: 4 (lower is better)
Translates to: TKLLNHHLRMSCLLVRVLETAGL*HVTEGW
Trigger: CCACCCCTCTGTCACATGCCACAGTCCCGCAGTCTC...CAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CACAGGCCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGGCCCTCGCTGCCTGGTaGCCCCTCACTGCTGTCACG +
Preference number: 4 (lower is better)
Translates to: HRPLKHCFQSLGHRVKTQALAAW*PLTAVT
Trigger: CGTGACAGCAGTGAGGGGCCACCAGGCAGCGAGGGC...CTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGGCCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CACAGGCCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGCCTGCTCACCCGGGCTaGCCTTGTCCACACCGCCAC +
Preference number: 4 (lower is better)
Translates to: HRPLKHCFQSLGHRVKTQPAHPG*PCPHRH
Trigger: GTGGCGGTGTGGACAAGGCCAGCCCGGGTGAGCAGG...CTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGGCCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp TGCCTCAGAGCATGGAGTTTCCCTATCACCGGAGGTCAAGACAGGAATTTGGGCCCTGCTCACCCGGGCTaGCCTTGTCCACACCGCCAC +
Preference number: 4 (lower is better)
Translates to: CLRAWSFPITGGQDRNLGPAHPG*PCPHRH
Trigger: GTGGCGGTGTGGACAAGGCCAGCCCGGGTGAGCAGG...GCCCAAATTCCTGTCTTGACCTCCGGTGATAGGGAAACTCCATGCTCTGAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp AGGCCACCTCACCACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTTCGCACAGAGGTAGCTaGAGCGCGTTGTTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: RPPHHQAPEPPPQDVLPPSHRGS*SALFLS
Trigger: GCTGAGGAACAACGCGCTCCAGCTACCTCTGTGCGA...AGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGTGGTGAGGTGGCCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GCCCGCTCTGAGACACATGCTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCACAGGCTCACGAGTTTaGGGCTCTGCACAAGCTCTG +
Preference number: 4 (lower is better)
Translates to: ARSETHAQLHCCPSEQGSTGSRV*GSAQAL
Trigger: CAGAGCTTGTGCAGAGCCTCAAACTCGTGAGCCTGT...GCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAGCATGTGTCTCAGAGCGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp GCCCGCTCTGAGACACATGCTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCTGCGGGCTTCATGCTTaGAGGTGGAACAGTGGACAG +
Preference number: 4 (lower is better)
Translates to: ARSETHAQLHCCPSEQGSCGLHA*RWNSGQ
Trigger: CTGTCCACTGTTCCACCTGCAAGCATGAAGCCCGCA...GCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAGCATGTGTCTCAGAGCGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp CACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGTGGCTGCGGGCTTCATaGTTGCAGGTGGAACAGTGG +
Preference number: 4 (lower is better)
Translates to: HTDVAPSLRTTLVSGPWKWLRAS*LQVEQW
Trigger: CCACTGTTCCACCTGCAAGCATGAAGCCCGCAGCCA...CTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp CCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGTCGTCTGGCTGCGGGCTTCATaGTTGCAGGTGGAACAGTGG +
Preference number: 4 (lower is better)
Translates to: PRSGRRPASGDSYQSGVVWLRAS*LQVEQW
Trigger: CCACTGTTCCACCTGCAAGCATGAAGCCCGCAGCCA...GACGACTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp CATCTGGGCTTCCCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGGGCCCTGGCTTTTCCTaGGGTGGTAGCGCTTGTGCA +
Preference number: 4 (lower is better)
Translates to: HLGFPRSGRRPASGDSYQGPGFS*GGSACA
Trigger: TGCACAAGCGCTACCACCGCAGGAAAAGCCAGGGCC...CTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGGGAAGCCCAGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp TCTCCTGGCTCACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGAGAGCAGCCCTTCCTTaGGGCTGCGCTGGATGTTCA +
Preference number: 4 (lower is better)
Translates to: SPGSHRRGSVSENHAGFWRAALP*GCAGCS
Trigger: TGAACATCCAGCGCAGCCGCAAGGAAGGGCTGCTCT...CCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTGAGCCAGGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CATCTGGGCTTCCCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTTGCAGGTGGAACAGTaGACAGTGCCGGCCCAGCCA +
Preference number: 4 (lower is better)
Translates to: HLGFPRSGRRPASGDSYQLQVEQ*TVPAQP
Trigger: TGGCTGGGCCGGCACTGTCCACTGTTCCACCTGCAA...CTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGGGAAGCCCAGATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp TCTCCTGGCTCACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGACCCGCAGCTCGTGGTaGGTTTCTTTCCAGGCTGAA +
Preference number: 4 (lower is better)
Translates to: SPGSHRRGSVSENHAGFWTRSSW*VSFQAE
Trigger: TTCAGCCTGGAAAGAAACTCACCACGAGCTGCGGGT...CCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTGAGCCAGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp GCCCGCTCTGAGACACATGCTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCACGAGTTTGAGGCTCTaGACAAGCTCTGCACCACGT +
Preference number: 4 (lower is better)
Translates to: ARSETHAQLHCCPSEQGSTSLRL*TSSAPR
Trigger: ACGTGGTGCAGAGCTTGTGCAGAGCCTCAAACTCGT...GCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAGCATGTGTCTCAGAGCGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGTCGTCCCGAGCACCATGCGCTaGATGATGCTGTTGTGCTCT +
Preference number: 4 (lower is better)
Translates to: PRSGRRPASGDSYQSGVVPSTMR*MMLLCS
Trigger: AGAGCACAACAGCATCATCCAGCGCATGGTGCTCGG...GACGACTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGCTTCATGCTTGCAGGTaGAACAGTGGACAGTGCCGG +
Preference number: 4 (lower is better)
Translates to: HTDVAPSLRTTLVSGPWKLHACR*NSGQCR
Trigger: CCGGCACTGTCCACTGTTCCACCTGCAAGCATGAAG...CTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGTCGTCGATCTGGTTGAGCACTaGGGCACTCTTGCGAGACGT +
Preference number: 4 (lower is better)
Translates to: PRSGRRPASGDSYQSGVVDLVEH*GTLARR
Trigger: ACGTCTCGCAAGAGTGCCCCAGTGCTCAACCAGATC...GACGACTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CCCTCCAGGTTAAGTGCAGAACATGGATTTCTAAGCGCTCCATTTACGTTGGGTCCACCAGAGCCTCCCTaGCTGCCACCACCCGTGCCC +
Preference number: 4 (lower is better)
Translates to: PSRLSAEHGFLSAPFTLGPPEPP*LPPPVP
Trigger: GGGCACGGGTGGTGGCAGCCAGGGAGGCTCTGGTGG...ACCCAACGTAAATGGAGCGCTTAGAAATCCATGTTCTGCACTTAACCTGGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp TGCCTCAGAGCATGGAGTTTCCCTATCACCGGAGGTCAAGACAGGAATTTGGGCAGAGGGGCTGGGGCCTaGGGCGCTGATGCACATCTT +
Preference number: 4 (lower is better)
Translates to: CLRAWSFPITGGQDRNLGRGAGA*GADAHL
Trigger: AAGATGTGCATCAGCGCCCCAGGCCCCAGCCCCTCT...GCCCAAATTCCTGTCTTGACCTCCGGTGATAGGGAAACTCCATGCTCTGAGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp AACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGACTTTGCTGCCTTCGCACAGAGGTAGCTaGAGCGCGTTGTTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: NHHLRMSCLLVRVLTLLPSHRGS*SALFLS
Trigger: GCTGAGGAACAACGCGCTCCAGCTACCTCTGTGCGA...AGGCAGCAAAGTCAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CAA 72 bp TGCAGCAGGCCCTCCGCTTCTCCTCTCCACACAGGTTaGAAGGAAACCCTGCCTTGTGTCCTGCAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: CSRPSASPLHTG*KETLPCVLQGK
Trigger: TTTCCCCTGCAGGACACAAGGCAGGGTTTCCTTCAAACCTGTGTGGAGAGGAGAAGCGGAGGGCCTGCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp CAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGGTGCACAGGCCCCATGCCTGGCAAGTTTaGCCACTGCAAAATGACCTC +
Preference number: 4 (lower is better)
Translates to: QTGVGAQTVALRFSVHRPHAWQV*PLQNDL
Trigger: GAGGTCATTTTGCAGTGGTCAAACTTGCCAGGCATG...GGGCCTGTGCACCGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp ACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGCCACCTTCTCACCTGTaGAGACATGCCTGGCAAGTT +
Preference number: 4 (lower is better)
Translates to: TKLLNHHLRMSCLLVRVLPPSHL*RHAWQV
Trigger: AACTTGCCAGGCATGTCTTCACAGGTGAGAAGGTGG...CAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp CAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGGTGCACAGGCCCACAGAGGGGTGGCAGTaGGATCATCTTCAAGGTCTT +
Preference number: 4 (lower is better)
Translates to: QTGVGAQTVALRFSVHRPTEGWQ*DHLQGL
Trigger: AAGACCTTGAAGATGATCTCACTGCCACCCCTCTGT...GGGCCTGTGCACCGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp AACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGACTTTGCTGCCTTGCGGGCTTCATGCTTaGAGGTGGAACAGTGGACAG +
Preference number: 4 (lower is better)
Translates to: NHHLRMSCLLVRVLTLLPCGLHA*RWNSGQ
Trigger: CTGTCCACTGTTCCACCTGCAAGCATGAAGCCCGCA...AGGCAGCAAAGTCAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp TCTCCTGGCTCACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGGGAAGAGATGACCAGTaGCTAGAGTGTCCAGCTTCG +
Preference number: 4 (lower is better)
Translates to: SPGSHRRGSVSENHAGFWGRDDQ*LECPAS
Trigger: CGAAGCTGGACACTCTAGCCACTGGTCATCTCTTCC...CCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTGAGCCAGGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGCCCTGGAGCCAAGGGTaGCTTTCAATCTCTTCCAGA +
Preference number: 4 (lower is better)
Translates to: HTDVAPSLRTTLVSGPWKPWSQG*LSISSR
Trigger: TCTGGAAGAGATTGAAAGCCACCCTTGGCTCCAGGG...CTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp ACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGCATGACTGCCTAAACTaGGCCTTGATGTTGCTGGGG +
Preference number: 4 (lower is better)
Translates to: TKLLNHHLRMSCLLVRVLHDCLN*ALMLLG
Trigger: CCCCAGCAACATCAAGGCCCAGTTTAGGCAGTCATG...CAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CATCTGGGCTTCCCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGCTTCATGCTTGCAGGTaGAACAGTGGACAGTGCCGG +
Preference number: 4 (lower is better)
Translates to: HLGFPRSGRRPASGDSYQLHACR*NSGQCR
Trigger: CCGGCACTGTCCACTGTTCCACCTGCAAGCATGAAG...CTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGGGAAGCCCAGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp CCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGTCGTCACAGAGGGGTGGCAGTaGGATCATCTTCAAGGTCTT +
Preference number: 4 (lower is better)
Translates to: PRSGRRPASGDSYQSGVVTEGWQ*DHLQGL
Trigger: AAGACCTTGAAGATGATCTCACTGCCACCCCTCTGT...GACGACTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp ACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGTTGGTTGGCCATGACTaGCTAAACTGGGCCTTGATG +
Preference number: 4 (lower is better)
Translates to: TKLLNHHLRMSCLLVRVLLVGHD*LNWALM
Trigger: CATCAAGGCCCAGTTTAGGCAGTCATGGCCAACCAA...CAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp GCGACAGTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTCTTGCGCCCACTGGCTaGGGGCTTCATGCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: ATVYCNAPIDISPGSHRRLAPTG*GLHACR
Trigger: CCTGCAAGCATGAAGCCCGCAGCCAGTGGGCGCAAG...ACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAACTGTCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp GGCTGGAAAAGAAAAGTAGCGTGTAGCAGCATGCACAAAGACCATGCATTGTCACTGGTGGCCCCTCACTaGTGTCACGCCGGTGCCACG +
Preference number: 4 (lower is better)
Translates to: GWKRKVACSSMHKDHALSLVAPH*CHAGAT
Trigger: CGTGGCACCGGCGTGACAGCAGTGAGGGGCCACCAG...TGACAATGCATGGTCTTTGTGCATGCTGCTACACGCTACTTTTCTTTTCCAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp ACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGATCGGAAGAGATGACCAGTaGCTAGAGTGTCCAGCTTCG +
Preference number: 4 (lower is better)
Translates to: TDVAPSLRTTLVSGPWKIGRDDQ*LECPAS
Trigger: CGAAGCTGGACACTCTAGCCACTGGTCATCTCTTCC...GATCTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp AGGCCACCTCACCACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTGCCAAGCAGGATTTCTaGAGCAGAGTATGCAAGAGA +
Preference number: 4 (lower is better)
Translates to: RPPHHQAPEPPPQDVLPPAKQDF*SRVCKR
Trigger: TCTCTTGCATACTCTGCTCCAGAAATCCTGCTTGGC...AGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGTGGTGAGGTGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp GCCCGCTCTGAGACACATGCTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCGCCAAGCAGGATTTCTaGAGCAGAGTATGCAAGAGA +
Preference number: 4 (lower is better)
Translates to: ARSETHAQLHCCPSEQGSAKQDF*SRVCKR
Trigger: TCTCTTGCATACTCTGCTCCAGAAATCCTGCTTGGC...GCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAGCATGTGTCTCAGAGCGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp GTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGGCTCCGAGACTGCGGGACTGTaGCATGTGACAGAGGGGTGG +
Preference number: 4 (lower is better)
Translates to: VYCNAPIDISPGSHRRGSETAGL*HVTEGW
Trigger: CCACCCCTCTGTCACATGCCACAGTCCCGCAGTCTC...GGAGCCACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp GCTTCCCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGAGGCCTTTGCTCCTGTaGCCATTGAGGACATTGTCA +
Preference number: 4 (lower is better)
Translates to: ASQDQGGGLPQEIAISPERPLLL*PLRTLS
Trigger: TGACAATGTCCTCAATGGCCACAGGAGCAAAGGCCT...CTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGGGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp GTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGGCTCCGCAGCACCACCTGCGTaGACAGGGACACAGGCTTCT +
Preference number: 4 (lower is better)
Translates to: VYCNAPIDISPGSHRRGSAAPPA*TGTQAS
Trigger: AGAAGCCTGTGTCCCTGTCCACGCAGGTGGTGCTGC...GGAGCCACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp AACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGACTTTGCTGCCTTGTTCCTCAGCTTCTTaGTCCTCACCGGGTCAAGGT +
Preference number: 4 (lower is better)
Translates to: NHHLRMSCLLVRVLTLLPCSSAS*SSPGQG
Trigger: ACCTTGACCCGGTGAGGACCAAGAAGCTGAGGAACA...AGGCAGCAAAGTCAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp ACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGTGGTCTGGGTGTCTATaGCTTCATAGAGACGCACAA +
Preference number: 4 (lower is better)
Translates to: TKLLNHHLRMSCLLVRVLWSGCL*LHRDAQ
Trigger: TTGTGCGTCTCTATGAAGTCATAGACACCCAGACCA...CAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GCTTCCCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGTGGTCTGGGTGTCTATaGCTTCATAGAGACGCACAA +
Preference number: 4 (lower is better)
Translates to: ASQDQGGGLPQEIAISPEWSGCL*LHRDAQ
Trigger: TTGTGCGTCTCTATGAAGTCATAGACACCCAGACCA...CTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGGGAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp TGCCTCAGAGCATGGAGTTTCCCTATCACCGGAGGTCAAGACAGGAATTTGGGCGCACCATGCGCTGGATaGTGCTGTTGTGCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: CLRAWSFPITGGQDRNLGAPCAG*CCCALP
Trigger: AGGAAGAGCACAACAGCATCATCCAGCGCATGGTGC...GCCCAAATTCCTGTCTTGACCTCCGGTGATAGGGAAACTCCATGCTCTGAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GCTTCCCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGAATTTTGGTTGGCCATaGCTGCCTAAACTGGGCCTT +
Preference number: 4 (lower is better)
Translates to: ASQDQGGGLPQEIAISPENFGWP*LPKLGL
Trigger: AAGGCCCAGTTTAGGCAGTCATGGCCAACCAAAATT...CTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGGGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp CCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGCATCTGTGCTCCTGTGGCCATTaGGGACATTGTCACCAGCCC +
Preference number: 4 (lower is better)
Translates to: PLKHCFQSLGHRVKTQHLCSCGH*GHCHQP
Trigger: GGGCTGGTGACAATGTCCTCAATGGCCACAGGAGCA...CAGATGCTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp CCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGTCGTCTCACCTGTGAAGACATaGCTGGCAAGTTTGACCACT +
Preference number: 4 (lower is better)
Translates to: PRSGRRPASGDSYQSGVVSPVKT*LASLTT
Trigger: AGTGGTCAAACTTGCCAGGCATGTCTTCACAGGTGA...GACGACTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp GCTTCCCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGGCTGCACTAGTTTCATaGACCTCACTTCCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: ASQDQGGGLPQEIAISPEAALVS*TSLPGR
Trigger: TCTTCCAGGAAGTGAGGTGCATGAAACTAGTGCAGC...CTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGGGAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp TGCCTCAGAGCATGGAGTTTCCCTATCACCGGAGGTCAAGACAGGAATTTGGGCCCGAGCACCATGCGCTaGATGATGCTGTTGTGCTCT +
Preference number: 4 (lower is better)
Translates to: CLRAWSFPITGGQDRNLGPSTMR*MMLLCS
Trigger: AGAGCACAACAGCATCATCCAGCGCATGGTGCTCGG...GCCCAAATTCCTGTCTTGACCTCCGGTGATAGGGAAACTCCATGCTCTGAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp AGGCCACCTCACCACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTGCTGAAATTTGTTGCTaGAGCCAAAGTCTGTCAACT +
Preference number: 4 (lower is better)
Translates to: RPPHHQAPEPPPQDVLPPAEICC*SQSLST
Trigger: AGTTGACAGACTTTGGCTTCAGCAACAAATTTCAGC...AGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGTGGTGAGGTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp CCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGCATCTGACCCGCAGCTCGTGGTaGGTTTCTTTCCAGGCTGAA +
Preference number: 4 (lower is better)
Translates to: PLKHCFQSLGHRVKTQHLTRSSW*VSFQAE
Trigger: TTCAGCCTGGAAAGAAACTCACCACGAGCTGCGGGT...CAGATGCTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp CACAGGCCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGGTGCACTGTGCCTGGTaGGGCAATGTTCATCTTCAG +
Preference number: 4 (lower is better)
Translates to: HRPLKHCFQSLGHRVKTQVHCAW*GNVHLQ
Trigger: CTGAAGATGAACATTGCCTCACCAGGCACAGTGCAC...CTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGGCCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp CAGGAATTTGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGTCTGGTGGCCCCTCACTaGTGTCACGCCGGTGCCACG +
Preference number: 4 (lower is better)
Translates to: QEFGLFTRKRKHFPSRLSLVAPH*CHAGAT
Trigger: CGTGGCACCGGCGTGACAGCAGTGAGGGGCCACCAG...ACTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp TCTCCTGGCTCACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGGGTTTCAAGTCTCTGTaGACCACATGGAGTTTATGG +
Preference number: 4 (lower is better)
Translates to: SPGSHRRGSVSENHAGFWGFKSL*TTWSLW
Trigger: CCATAAACTCCATGTGGTCCACAGAGACTTGAAACC...CCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTGAGCCAGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp GGCTGGAAAAGAAAAGTAGCGTGTAGCAGCATGCACAAAGACCATGCATTGTCAGCGATTGGTGACCGATaGCTTCCGGCGCAGCACCAC +
Preference number: 4 (lower is better)
Translates to: GWKRKVACSSMHKDHALSAIGDR*LPAQHH
Trigger: GTGGTGCTGCGCCGGAAGCCATCGGTCACCAATCGC...TGACAATGCATGGTCTTTGTGCATGCTGCTACACGCTACTTTTCTTTTCCAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp AACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGACTTTGCTGCCTGGATGTTCACGGAGATaGTCTTTTCGCACAGAGGTA +
Preference number: 4 (lower is better)
Translates to: NHHLRMSCLLVRVLTLLPGCSRR*SFRTEV
Trigger: TACCTCTGTGCGAAAAGACCATCTCCGTGAACATCC...AGGCAGCAAAGTCAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp CCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGTCGTCAGTTTCTTTCCAGGCTaGAATTTGTTGCTGAAGCCA +
Preference number: 4 (lower is better)
Translates to: PRSGRRPASGDSYQSGVVSFFPG*NLLLKP
Trigger: TGGCTTCAGCAACAAATTTCAGCCTGGAAAGAAACT...GACGACTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp CACAGGCCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGCGCACAATGTTGGGGTaGTGCACTAGTTTCATGCAC +
Preference number: 4 (lower is better)
Translates to: HRPLKHCFQSLGHRVKTQRTMLG*CTSFMH
Trigger: GTGCATGAAACTAGTGCAGCACCCCAACATTGTGCG...CTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGGCCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp CACAGGCCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGGCTCCATATGTCTACTaGAGGGGCATCGTACTCATC +
Preference number: 4 (lower is better)
Translates to: HRPLKHCFQSLGHRVKTQAPYVY*RGIVLI
Trigger: GATGAGTACGATGCCCCTGCAGTAGACATATGGAGC...CTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGGCCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp GTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGGCTCCGGAGCTCATCTTTCTTaGCTGGGTCACACAGGCCTT +
Preference number: 4 (lower is better)
Translates to: VYCNAPIDISPGSHRRGSGAHLS*LGHTGL
Trigger: AAGGCCTGTGTGACCCAGCCAAGAAAGATGAGCTCC...GGAGCCACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGCATCTGGGAGCTCATCTTTCTTaGCTGGGTCACACAGGCCTT +
Preference number: 4 (lower is better)
Translates to: PLKHCFQSLGHRVKTQHLGAHLS*LGHTGL
Trigger: AAGGCCTGTGTGACCCAGCCAAGAAAGATGAGCTCC...CAGATGCTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp GGCTGGAAAAGAAAAGTAGCGTGTAGCAGCATGCACAAAGACCATGCATTGTCATTGCAGGTGGAACAGTaGACAGTGCCGGCCCAGCCA +
Preference number: 4 (lower is better)
Translates to: GWKRKVACSSMHKDHALSLQVEQ*TVPAQP
Trigger: TGGCTGGGCCGGCACTGTCCACTGTTCCACCTGCAA...TGACAATGCATGGTCTTTGTGCATGCTGCTACACGCTACTTTTCTTTTCCAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp TATTGGTTAAGACAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGGATCTGGTTGAGCACTaGGGCACTCTTGCGAGACGT +
Preference number: 4 (lower is better)
Translates to: YWLRQTGVGAQTVALRFSDLVEH*GTLARR
Trigger: ACGTCTCGCAAGAGTGCCCCAGTGCTCAACCAGATC...CGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTGTCTTAACCAATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CAGGAATTTGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGTATCGCCCTCGCTGCCTaGTGGCCCCTCACTGCTGTC +
Preference number: 4 (lower is better)
Translates to: QEFGLFTRKRKHFPSRLSIALAA*WPLTAV
Trigger: GACAGCAGTGAGGGGCCACCAGGCAGCGAGGGCGAT...ACTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGGCTCCCATGCCTGGCAAGTTTaGCCACTGCAAAATGACCTC +
Preference number: 4 (lower is better)
Translates to: VYCNAPIDISPGSHRRGSHAWQV*PLQNDL
Trigger: GAGGTCATTTTGCAGTGGTCAAACTTGCCAGGCATG...GGAGCCACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp TGCCTCAGAGCATGGAGTTTCCCTATCACCGGAGGTCAAGACAGGAATTTGGGCGCTTCGTCTTGTCAATaGCTTTCACTGCCACCTTCT +
Preference number: 4 (lower is better)
Translates to: CLRAWSFPITGGQDRNLGASSCQ*LSLPPS
Trigger: AGAAGGTGGCAGTGAAAGTCATTGACAAGACGAAGC...GCCCAAATTCCTGTCTTGACCTCCGGTGATAGGGAAACTCCATGCTCTGAGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GGCTGGAAAAGAAAAGTAGCGTGTAGCAGCATGCACAAAGACCATGCATTGTCAATACTTGGTGGCTGGTaGTGGGTCCACTCCCTGGAG +
Preference number: 4 (lower is better)
Translates to: GWKRKVACSSMHKDHALSILGGW*WVHSLE
Trigger: CTCCAGGGAGTGGACCCATCACCAGCCACCAAGTAT...TGACAATGCATGGTCTTTGTGCATGCTGCTACACGCTACTTTTCTTTTCCAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GACCAATTAGCTGACAAGTTTGTGTTCTCAGCACATACCAACTCTGGCTCTAGGTGCTCCTGTGGCCATTaGGGACATTGTCACCAGCCC +
Preference number: 4 (lower is better)
Translates to: DQLADKFVFSAHTNSGSRCSCGH*GHCHQP
Trigger: GGGCTGGTGACAATGTCCTCAATGGCCACAGGAGCA...CCTAGAGCCAGAGTTGGTATGTGCTGAGAACACAAACTTGTCAGCTAATTGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp CCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGCATCTGTTGGTTGGCCATGACTaGCTAAACTGGGCCTTGATG +
Preference number: 4 (lower is better)
Translates to: PLKHCFQSLGHRVKTQHLLVGHD*LNWALM
Trigger: CATCAAGGCCCAGTTTAGGCAGTCATGGCCAACCAA...CAGATGCTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp ACAGACATTGTGTACCCAGAGGGTCACCAACCACACACAACTAATAAGGCTATGAGAGCAGCCCTTCCTTaGGGCTGCGCTGGATGTTCA +
Preference number: 4 (lower is better)
Translates to: TDIVYPEGHQPHTTNKAMRAALP*GCAGCS
Trigger: TGAACATCCAGCGCAGCCGCAAGGAAGGGCTGCTCT...CATAGCCTTATTAGTTGTGTGTGGTTGGTGACCCTCTGGGTACACAATGTCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CACAGGCCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGAGAGACGCACAATGTTaGGGTGCTGCACTAGTTTCA +
Preference number: 4 (lower is better)
Translates to: HRPLKHCFQSLGHRVKTQRDAQC*GAALVS
Trigger: TGAAACTAGTGCAGCACCCCAACATTGTGCGTCTCT...CTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGGCCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGCATCTGGAGAGGCTCTCCTTTTaGGGTCTCTCTGTAGCATTC +
Preference number: 4 (lower is better)
Translates to: PLKHCFQSLGHRVKTQHLERLSF*GLSVAF
Trigger: GAATGCTACAGAGAGACCCCAAAAGGAGAGCCTCTC...CAGATGCTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CACAGGCCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGGAATGTTATACTTGGTaGCTGGTGATGGGTCCACTC +
Preference number: 4 (lower is better)
Translates to: HRPLKHCFQSLGHRVKTQECYTW*LVMGPL
Trigger: GAGTGGACCCATCACCAGCCACCAAGTATAACATTC...CTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGGCCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GGCTGGAAAAGAAAAGTAGCGTGTAGCAGCATGCACAAAGACCATGCATTGTCAGCACCATGCGCTGGATaGTGCTGTTGTGCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: GWKRKVACSSMHKDHALSAPCAG*CCCALP
Trigger: AGGAAGAGCACAACAGCATCATCCAGCGCATGGTGC...TGACAATGCATGGTCTTTGTGCATGCTGCTACACGCTACTTTTCTTTTCCAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GACCAATTAGCTGACAAGTTTGTGTTCTCAGCACATACCAACTCTGGCTCTAGGACAGGCTCACGAGTTTaGGGCTCTGCACAAGCTCTG +
Preference number: 4 (lower is better)
Translates to: DQLADKFVFSAHTNSGSRTGSRV*GSAQAL
Trigger: CAGAGCTTGTGCAGAGCCTCAAACTCGTGAGCCTGT...CCTAGAGCCAGAGTTGGTATGTGCTGAGAACACAAACTTGTCAGCTAATTGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp ACAGGAATTTGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGGGCCCTGGCTTTTCCTaGGGTGGTAGCGCTTGTGCA +
Preference number: 4 (lower is better)
Translates to: TGIWAFHKETKAFSLQVKGPGFS*GGSACA
Trigger: TGCACAAGCGCTACCACCGCAGGAAAAGCCAGGGCC...CTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGCATCTGAGAGACGCACAATGTTaGGGTGCTGCACTAGTTTCA +
Preference number: 4 (lower is better)
Translates to: PLKHCFQSLGHRVKTQHLRDAQC*GAALVS
Trigger: TGAAACTAGTGCAGCACCCCAACATTGTGCGTCTCT...CAGATGCTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CCCTCCAGGTTAAGTGCAGAACATGGATTTCTAAGCGCTCCATTTACGTTGGGTCCCTGGAGCCAAGGGTaGCTTTCAATCTCTTCCAGA +
Preference number: 4 (lower is better)
Translates to: PSRLSAEHGFLSAPFTLGPWSQG*LSISSR
Trigger: TCTGGAAGAGATTGAAAGCCACCCTTGGCTCCAGGG...ACCCAACGTAAATGGAGCGCTTAGAAATCCATGTTCTGCACTTAACCTGGAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGGCTCCTTGACCACTGCAAAATaGCCTCGACCCAAGGTTTTA +
Preference number: 4 (lower is better)
Translates to: VYCNAPIDISPGSHRRGSLTTAK*PRPKVL
Trigger: TAAAACCTTGGGTCGAGGTCATTTTGCAGTGGTCAA...GGAGCCACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GGCTGGAAAAGAAAAGTAGCGTGTAGCAGCATGCACAAAGACCATGCATTGTCAGTGCACTGTGCCTGGTaGGGCAATGTTCATCTTCAG +
Preference number: 4 (lower is better)
Translates to: GWKRKVACSSMHKDHALSVHCAW*GNVHLQ
Trigger: CTGAAGATGAACATTGCCTCACCAGGCACAGTGCAC...TGACAATGCATGGTCTTTGTGCATGCTGCTACACGCTACTTTTCTTTTCCAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp CCCTCCAGGTTAAGTGCAGAACATGGATTTCTAAGCGCTCCATTTACGTTGGGTCGCACAATGTTGGGGTaGTGCACTAGTTTCATGCAC +
Preference number: 4 (lower is better)
Translates to: PSRLSAEHGFLSAPFTLGRTMLG*CTSFMH
Trigger: GTGCATGAAACTAGTGCAGCACCCCAACATTGTGCG...ACCCAACGTAAATGGAGCGCTTAGAAATCCATGTTCTGCACTTAACCTGGAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp ACAGACATTGTGTACCCAGAGGGTCACCAACCACACACAACTAATAAGGCTATGGAGAGGCTCTCCTTTTaGGGTCTCTCTGTAGCATTC +
Preference number: 4 (lower is better)
Translates to: TDIVYPEGHQPHTTNKAMERLSF*GLSVAF
Trigger: GAATGCTACAGAGAGACCCCAAAAGGAGAGCCTCTC...CATAGCCTTATTAGTTGTGTGTGGTTGGTGACCCTCTGGGTACACAATGTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CCCTCCAGGTTAAGTGCAGAACATGGATTTCTAAGCGCTCCATTTACGTTGGGTGAATGTTATACTTGGTaGCTGGTGATGGGTCCACTC +
Preference number: 4 (lower is better)
Translates to: PSRLSAEHGFLSAPFTLGECYTW*LVMGPL
Trigger: GAGTGGACCCATCACCAGCCACCAAGTATAACATTC...ACCCAACGTAAATGGAGCGCTTAGAAATCCATGTTCTGCACTTAACCTGGAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp GACCAATTAGCTGACAAGTTTGTGTTCTCAGCACATACCAACTCTGGCTCTAGGGGGGAATGTTATACTTaGTGGCTGGTGATGGGTCCA +
Preference number: 4 (lower is better)
Translates to: DQLADKFVFSAHTNSGSRGECYT*WLVMGP
Trigger: TGGACCCATCACCAGCCACCAAGTATAACATTCCCC...CCTAGAGCCAGAGTTGGTATGTGCTGAGAACACAAACTTGTCAGCTAATTGGTC
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GCGACAGTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTCTCCAAGTTCTAGAATaGGATAAAGTTTGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: ATVYCNAPIDISPGSHRRLQVLE*DKVWSG
Trigger: CCCAGACCAAACTTTATCTCATTCTAGAACTTGGAG...ACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAACTGTCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp TATTGGTTAAGACAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGCTCCAAGTTCTAGAATaGGATAAAGTTTGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: YWLRQTGVGAQTVALRFSLQVLE*DKVWSG
Trigger: CCCAGACCAAACTTTATCTCATTCTAGAACTTGGAG...CGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTGTCTTAACCAATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp GCGACAGTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGCTGAAATTTGTTGCTaGAGCCAAAGTCTGTCAACT +
Preference number: 4 (lower is better)
Translates to: ATVYCNAPIDISPGSHRRAEICC*SQSLST
Trigger: AGTTGACAGACTTTGGCTTCAGCAACAAATTTCAGC...ACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAACTGTCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CACAGGCCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGTCATCTTCAAGGTCTTaGGGTACATCAATTTTGGTT +
Preference number: 4 (lower is better)
Translates to: HRPLKHCFQSLGHRVKTQSSSRS*GTSILV
Trigger: AACCAAAATTGATGTACCCCAAGACCTTGAAGATGA...CTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGGCCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp CCCTCCAGGTTAAGTGCAGAACATGGATTTCTAAGCGCTCCATTTACGTTGGGTAGTTTCTTTCCAGGCTaGAATTTGTTGCTGAAGCCA +
Preference number: 4 (lower is better)
Translates to: PSRLSAEHGFLSAPFTLGSFFPG*NLLLKP
Trigger: TGGCTTCAGCAACAAATTTCAGCCTGGAAAGAAACT...ACCCAACGTAAATGGAGCGCTTAGAAATCCATGTTCTGCACTTAACCTGGAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp CAGGAATTTGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGTGCTCCATATGTCTACTaGAGGGGCATCGTACTCATC +
Preference number: 4 (lower is better)
Translates to: QEFGLFTRKRKHFPSRLSAPYVY*RGIVLI
Trigger: GATGAGTACGATGCCCCTGCAGTAGACATATGGAGC...ACTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp TTATTGGATTATTTCCCATCTGTCACATACCTGTCAATGTTCACACAAGGAAAAGCCCTAGCAGGAGACTaGGGGACTGTGGCATGTGAC +
Preference number: 4 (lower is better)
Translates to: LLDYFPSVTYLSMFTQGKALAGD*GTVACD
Trigger: GTCACATGCCACAGTCCCGCAGTCTCCTGCTAGGGC...TTTTCCTTGTGTGAACATTGACAGGTATGTGACAGATGGGAAATAATCCAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp CAGGAATTTGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGTGGGGAATGTTATACTTaGTGGCTGGTGATGGGTCCA +
Preference number: 4 (lower is better)
Translates to: QEFGLFTRKRKHFPSRLSGECYT*WLVMGP
Trigger: TGGACCCATCACCAGCCACCAAGTATAACATTCCCC...ACTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp ACAGGAATTTGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGAGGCCTTTGCTCCTGTaGCCATTGAGGACATTGTCA +
Preference number: 4 (lower is better)
Translates to: TGIWAFHKETKAFSLQVKRPLLL*PLRTLS
Trigger: TGACAATGTCCTCAATGGCCACAGGAGCAAAGGCCT...CTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
3UTR CAA 72 bp TGGAGTTTCCCTATCACCGGAGGTCAAGACAGGAATTaGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCT +
Preference number: 4 (lower is better)
Translates to: WSFPITGGQDRN*GFSQGNESIFP
Trigger: AGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTGTCTTGACCTCCGGTGATAGGGAAACTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp CAGGAATTTGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGTGCTTCGTCTTGTCAATaGCTTTCACTGCCACCTTCT +
Preference number: 4 (lower is better)
Translates to: QEFGLFTRKRKHFPSRLSASSCQ*LSLPPS
Trigger: AGAAGGTGGCAGTGAAAGTCATTGACAAGACGAAGC...ACTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp TTATTGGATTATTTCCCATCTGTCACATACCTGTCAATGTTCACACAAGGAAAACCTCGAAGATCTGGTTaGGCACTGGGGCACTCTTGC +
Preference number: 4 (lower is better)
Translates to: LLDYFPSVTYLSMFTQGKPRRSG*ALGHSC
Trigger: GCAAGAGTGCCCCAGTGCTCAACCAGATCTTCGAGG...TTTTCCTTGTGTGAACATTGACAGGTATGTGACAGATGGGAAATAATCCAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp TTATTGGATTATTTCCCATCTGTCACATACCTGTCAATGTTCACACAAGGAAAAGATGGGTCCACTCCCTaGAGCCAAGGGTGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: LLDYFPSVTYLSMFTQGKDGSTP*SQGWLS
Trigger: TGAAAGCCACCCTTGGCTCCAGGGAGTGGACCCATC...TTTTCCTTGTGTGAACATTGACAGGTATGTGACAGATGGGAAATAATCCAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp CAGGAATTTGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGTTTGACCACTGCAAAATaGCCTCGACCCAAGGTTTTA +
Preference number: 4 (lower is better)
Translates to: QEFGLFTRKRKHFPSRLSLTTAK*PRPKVL
Trigger: TAAAACCTTGGGTCGAGGTCATTTTGCAGTGGTCAA...ACTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp TTATTGGATTATTTCCCATCTGTCACATACCTGTCAATGTTCACACAAGGAAAAACGAGTTTGAGGCTCTaGACAAGCTCTGCACCACGT +
Preference number: 4 (lower is better)
Translates to: LLDYFPSVTYLSMFTQGKTSLRL*TSSAPR
Trigger: ACGTGGTGCAGAGCTTGTGCAGAGCCTCAAACTCGT...TTTTCCTTGTGTGAACATTGACAGGTATGTGACAGATGGGAAATAATCCAATAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp ACAGACATTGTGTACCCAGAGGGTCACCAACCACACACAACTAATAAGGCTATGTCATCTTCAAGGTCTTaGGGTACATCAATTTTGGTT +
Preference number: 4 (lower is better)
Translates to: TDIVYPEGHQPHTTNKAMSSSRS*GTSILV
Trigger: AACCAAAATTGATGTACCCCAAGACCTTGAAGATGA...CATAGCCTTATTAGTTGTGTGTGGTTGGTGACCCTCTGGGTACACAATGTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp TTATTGGATTATTTCCCATCTGTCACATACCTGTCAATGTTCACACAAGGAAAATGTTCCTCAGCTTCTTaGTCCTCACCGGGTCAAGGT +
Preference number: 4 (lower is better)
Translates to: LLDYFPSVTYLSMFTQGKCSSAS*SSPGQG
Trigger: ACCTTGACCCGGTGAGGACCAAGAAGCTGAGGAACA...TTTTCCTTGTGTGAACATTGACAGGTATGTGACAGATGGGAAATAATCCAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR TCA 90 bp TTATTGGATTATTTCCCATCTGTCACATACCTGTCAATGTTCACACAAGGAAAAAATTTTGGTTGGCCATaGCTGCCTAAACTGGGCCTT +
Preference number: 4 (lower is better)
Translates to: LLDYFPSVTYLSMFTQGKNFGWP*LPKLGL
Trigger: AAGGCCCAGTTTAGGCAGTCATGGCCAACCAAAATT...TTTTCCTTGTGTGAACATTGACAGGTATGTGACAGATGGGAAATAATCCAATAA
40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR GCA 90 bp TTATTGGATTATTTCCCATCTGTCACATACCTGTCAATGTTCACACAAGGAAAAGCTGCACTAGTTTCATaGACCTCACTTCCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: LLDYFPSVTYLSMFTQGKAALVS*TSLPGR
Trigger: TCTTCCAGGAAGTGAGGTGCATGAAACTAGTGCAGC...TTTTCCTTGTGTGAACATTGACAGGTATGTGACAGATGGGAAATAATCCAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CCA 90 bp TTATTGGATTATTTCCCATCTGTCACATACCTGTCAATGTTCACACAAGGAAAAGGATGTTCACGGAGATaGTCTTTTCGCACAGAGGTA +
Preference number: 4 (lower is better)
Translates to: LLDYFPSVTYLSMFTQGKGCSRR*SFRTEV
Trigger: TACCTCTGTGCGAAAAGACCATCTCCGTGAACATCC...TTTTCCTTGTGTGAACATTGACAGGTATGTGACAGATGGGAAATAATCCAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 90 bp TACCCGACGGGGTCCCACCAGAGCCTCCCTGGCTGCCACCACCCGTaGCCTGCTCACCCGGGCTGGCCTTGTCCACACCGCCACCGCTGC +
Preference number: 5 (lower is better)
Translates to: YPTGSHQSLPGCHHP*PAHPGWPCPHRHRC
Trigger: GCAGCGGTGGCGGTGTGGACAAGGCCAGCCCGGGTGAGCAGGGCACGGGTGGTGGCAGCCAGGGAGGCTCTGGTGGGACCCCGTCGGGTA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 90 bp CCCACTGGCTGCGGGCTTCATGCTTGCAGGTGGAACAGTGGACAGTaGCGGCCCAGCCAGCTCCGGGAGCTCATCTTTCTTGGCTGGGTC +
Preference number: 5 (lower is better)
Translates to: PTGCGLHACRWNSGQ*RPSQLRELIFLGWV
Trigger: GACCCAGCCAAGAAAGATGAGCTCCCGGAGCTGGCTGGGCCGGCACTGTCCACTGTTCCACCTGCAAGCATGAAGCCCGCAGCCAGTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 90 bp CCATGCAGCTGTGAGCCTAGGCACAGGCTCACGAGTTTGAGGCTCTaGACAAGCTCTGCACCACGTGGAGCGGCAGAGGCTGAGGCGGGG +
Preference number: 5 (lower is better)
Translates to: PCSCEPRHRLTSLRL*TSSAPRGAAEAEAG
Trigger: CCCCGCCTCAGCCTCTGCCGCTCCACGTGGTGCAGAGCTTGTGCAGAGCCTCAAACTCGTGAGCCTGTGCCTAGGCTCACAGCTGCATGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 90 bp GAGCACTGGGGCACTCTTGCGAGACGTCAGGCGATTGGTGACCGATaGCTTCCGGCGCAGCACCACCTGCGTGGACAGGGACACAGGCTT +
Preference number: 5 (lower is better)
Translates to: EHWGTLARRQAIGDR*LPAQHHLRGQGHRL
Trigger: AAGCCTGTGTCCCTGTCCACGCAGGTGGTGCTGCGCCGGAAGCCATCGGTCACCAATCGCCTGACGTCTCGCAAGAGTGCCCCAGTGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 90 bp CTGGCGGGGCTGGAGGCGCAGAGCAGCCCTTCCTTGCGGCTGCGCTaGATGTTCACGGAGATGGTCTTTTCGCACAGAGGTAGCTGGAGC +
Preference number: 5 (lower is better)
Translates to: LAGLEAQSSPSLRLR*MFTEMVFSHRGSWS
Trigger: GCTCCAGCTACCTCTGTGCGAAAAGACCATCTCCGTGAACATCCAGCGCAGCCGCAAGGAAGGGCTGCTCTGCGCCTCCAGCCCCGCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp AGGCCACCTCACCACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTGGCCTGCACAGCGCCTaGAGGACCCTGCTGTACCCG +
Preference number: 5 (lower is better)
Translates to: RPPHHQAPEPPPQDVLPPGLHSA*RTLLYP
Trigger: CGGGTACAGCAGGGTCCTCAAGGCGCTGTGCAGGCC...AGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGTGGTGAGGTGGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 90 bp AGCCCCGGCCCTGGCTTTTCCTGCGGTGGTAGCGCTTGTGCACTGTaGCTGGTGAGGCAATGTTCATCTTCAGCCGGCTCAGCTTGGGCG +
Preference number: 5 (lower is better)
Translates to: SPGPGFSCGGSACAL*LVRQCSSSAGSAWA
Trigger: CGCCCAAGCTGAGCCGGCTGAAGATGAACATTGCCTCACCAGGCACAGTGCACAAGCGCTACCACCGCAGGAAAAGCCAGGGCCGGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 90 bp AGCAGCTGGCGGGGCTGGAGGCGCAGAGCAGCCCTTCCTTGCGGCTaGGCTGGATGTTCACGGAGATGGTCTTTTCGCACAGAGGTAGCT +
Preference number: 5 (lower is better)
Translates to: SSWRGWRRRAALPCG*AGCSRRWSFRTEVA
Trigger: AGCTACCTCTGTGCGAAAAGACCATCTCCGTGAACATCCAGCGCAGCCGCAAGGAAGGGCTGCTCTGCGCCTCCAGCCCCGCCAGCTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 90 bp ACTTGCGCCCACTGGCTGCGGGCTTCATGCTTGCAGGTGGAACAGTaGACAGTGCCGGCCCAGCCAGCTCCGGGAGCTCATCTTTCTTGG +
Preference number: 5 (lower is better)
Translates to: TCAHWLRASCLQVEQ*TVPAQPAPGAHLSW
Trigger: CCAAGAAAGATGAGCTCCCGGAGCTGGCTGGGCCGGCACTGTCCACTGTTCCACCTGCAAGCATGAAGCCCGCAGCCAGTGGGCGCAAGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp CAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGGTGCACAGGCCCACCCTGAAGAGACACTaGCGCCCACTGGCTGCGGGC +
Preference number: 5 (lower is better)
Translates to: QTGVGAQTVALRFSVHRPTLKRH*RPLAAG
Trigger: GCCCGCAGCCAGTGGGCGCAAGTGTCTCTTCAGGGT...GGGCCTGTGCACCGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS TCA 90 bp GCCCTGGCTTTTCCTGCGGTGGTAGCGCTTGTGCACTGTGCCTGGTaGGGCAATGTTCATCTTCAGCCGGCTCAGCTTGGGCGGCAGGTT +
Preference number: 5 (lower is better)
Translates to: ALAFPAVVALVHCAW*GNVHLQPAQLGRQV
Trigger: AACCTGCCGCCCAAGCTGAGCCGGCTGAAGATGAACATTGCCTCACCAGGCACAGTGCACAAGCGCTACCACCGCAGGAAAAGCCAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp ACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGATCACCCTGAAGAGACACTaGCGCCCACTGGCTGCGGGC +
Preference number: 5 (lower is better)
Translates to: TDVAPSLRTTLVSGPWKITLKRH*RPLAAG
Trigger: GCCCGCAGCCAGTGGGCGCAAGTGTCTCTTCAGGGT...GATCTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp ACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGCAGAGCAGCCCTTCCTaGCGGCTGCGCTGGATGTTC +
Preference number: 5 (lower is better)
Translates to: TKLLNHHLRMSCLLVRVLQSSPS*RLRWMF
Trigger: GAACATCCAGCGCAGCCGCAAGGAAGGGCTGCTCTG...CAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS TCA 90 bp CGATGGCGTCTCGGTCCGCGATGTCCCCGAGCACCATGCGCTGGATaGTGCTGTTGTGCTCTTCCTCGGAGAGGTTCTTGTAGGACACGA +
Preference number: 5 (lower is better)
Translates to: RWRLGPRCPRAPCAG*CCCALPRRGSCRTR
Trigger: TCGTGTCCTACAAGAACCTCTCCGAGGAAGAGCACAACAGCATCATCCAGCGCATGGTGCTCGGGGACATCGCGGACCGAGACGCCATCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS CCA 90 bp CGCAGAGCAGCCCTTCCTTGCGGCTGCGCTGGATGTTCACGGAGATaGTCTTTTCGCACAGAGGTAGCTGGAGCGCGTTGTTCCTCAGCT +
Preference number: 5 (lower is better)
Translates to: RRAALPCGCAGCSRR*SFRTEVAGARCSSA
Trigger: AGCTGAGGAACAACGCGCTCCAGCTACCTCTGTGCGAAAAGACCATCTCCGTGAACATCCAGCGCAGCCGCAAGGAAGGGCTGCTCTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp TGCCTCAGAGCATGGAGTTTCCCTATCACCGGAGGTCAAGACAGGAATTTGGGCGCAAAGCCGCTGTCCTaGTCCAGCCTCCGCCGGCTC +
Preference number: 5 (lower is better)
Translates to: CLRAWSFPITGGQDRNLGAKPLS*SSLRRL
Trigger: GAGCCGGCGGAGGCTGGACAAGGACAGCGGCTTTGC...GCCCAAATTCCTGTCTTGACCTCCGGTGATAGGGAAACTCCATGCTCTGAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS TCA 90 bp TGCACCCTGCAGACACGCGGGGTGGCACCGTGTACTTGCAGTCCATaGTCATGGTCAGTGTCTCGCTGTCGTTGGCTTCTTGGAAGGGTG +
Preference number: 5 (lower is better)
Translates to: CTLQTRGVAPCTCSP*SWSVSRCRWLLGRV
Trigger: CACCCTTCCAAGAAGCCAACGACAGCGAGACACTGACCATGATCATGGACTGCAAGTACACGGTGCCACCCCGCGTGTCTGCAGGGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS TCA 90 bp GCTCAGCTTGGGCGGCAGGTTCTCGTCCATGTCAAACTCGTCGTCTaGCTCGCCCTCCTCGAAGATCTGGTTGAGCACTGGGGCACTCTT +
Preference number: 5 (lower is better)
Translates to: AQLGRQVLVHVKLVV*LALLEDLVEHWGTL
Trigger: AAGAGTGCCCCAGTGCTCAACCAGATCTTCGAGGAGGGCGAGTCAGACGACGAGTTTGACATGGACGAGAACCTGCCGCCCAAGCTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 90 bp CTGGAGAACAAGGCCTTCTGCGGGTCCAGAATGTACTTGGCGCCATaGAGCTGTGAGCCTAGGCACAGGCTCACGAGTTTGAGGCTCTGC +
Preference number: 5 (lower is better)
Translates to: LENKAFCGSRMYLAP*SCEPRHRLTSLRLC
Trigger: GCAGAGCCTCAAACTCGTGAGCCTGTGCCTAGGCTCACAGCTGCATGGCGCCAAGTACATTCTGGACCCGCAGAAGGCCTTGTTCTCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 90 bp CACGTGGACTTCTCCTGCACCTTCACGCTGGAGAACAAGGCCTTCTaGGGGTCCAGAATGTACTTGGCGCCATGCAGCTGTGAGCCTAGG +
Preference number: 5 (lower is better)
Translates to: HVDFSCTFTLENKAF*GSRMYLAPCSCEPR
Trigger: CCTAGGCTCACAGCTGCATGGCGCCAAGTACATTCTGGACCCGCAGAAGGCCTTGTTCTCCAGCGTGAAGGTGCAGGAGAAGTCCACGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 90 bp GGGAGCTCATCTTTCTTGGCTGGGTCACACAGGCCTTTGCTCCTGTaGCCATTGAGGACATTGTCACCAGCCCTAGCAGGAGACTGCGGG +
Preference number: 5 (lower is better)
Translates to: GSSSFLAGSHRPLLL*PLRTLSPALAGDCG
Trigger: CCCGCAGTCTCCTGCTAGGGCTGGTGACAATGTCCTCAATGGCCACAGGAGCAAAGGCCTGTGTGACCCAGCCAAGAAAGATGAGCTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 90 bp GCACTGTGCCTGGTGAGGCAATGTTCATCTTCAGCCGGCTCAGCTTaGGCGGCAGGTTCTCGTCCATGTCAAACTCGTCGTCTGACTCGC +
Preference number: 5 (lower is better)
Translates to: ALCLVRQCSSSAGSA*AAGSRPCQTRRLTR
Trigger: GCGAGTCAGACGACGAGTTTGACATGGACGAGAACCTGCCGCCCAAGCTGAGCCGGCTGAAGATGAACATTGCCTCACCAGGCACAGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp AGGCCACCTCACCACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTGGTGGCACCGTGTACTaGCAGTCCATGATCATGGTC +
Preference number: 5 (lower is better)
Translates to: RPPHHQAPEPPPQDVLPPGGTVY*QSMIMV
Trigger: GACCATGATCATGGACTGCAAGTACACGGTGCCACC...AGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGTGGTGAGGTGGCCT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp CAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGGTGCACAGGCCCTGCCTAAACTGGGCCTaGATGTTGCTGGGGCTAGCA +
Preference number: 5 (lower is better)
Translates to: QTGVGAQTVALRFSVHRPCLNWA*MLLGLA
Trigger: TGCTAGCCCCAGCAACATCAAGGCCCAGTTTAGGCA...GGGCCTGTGCACCGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp AGGCCACCTCACCACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTTGGCCATTGAGGACATaGTCACCAGCCCTAGCAGGA +
Preference number: 5 (lower is better)
Translates to: RPPHHQAPEPPPQDVLPPWPLRT*SPALAG
Trigger: TCCTGCTAGGGCTGGTGACAATGTCCTCAATGGCCA...AGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGTGGTGAGGTGGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp GCCCGCTCTGAGACACATGCTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCTTGCTCCTGTGGCCATaGAGGACATTGTCACCAGCC +
Preference number: 5 (lower is better)
Translates to: ARSETHAQLHCCPSEQGSLLLWP*RTLSPA
Trigger: GGCTGGTGACAATGTCCTCAATGGCCACAGGAGCAA...GCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAGCATGTGTCTCAGAGCGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp CACAGGCCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGTTCAGCCGGCTCAGCTaGGGCGGCAGGTTCTCGTCC +
Preference number: 5 (lower is better)
Translates to: HRPLKHCFQSLGHRVKTQFSRLS*GGRFSS
Trigger: GGACGAGAACCTGCCGCCCAAGCTGAGCCGGCTGAA...CTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGGCCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp GTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGGCTCCGCAAAGCCGCTGTCCTaGTCCAGCCTCCGCCGGCTC +
Preference number: 5 (lower is better)
Translates to: VYCNAPIDISPGSHRRGSAKPLS*SSLRRL
Trigger: GAGCCGGCGGAGGCTGGACAAGGACAGCGGCTTTGC...GGAGCCACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp CCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGCATCTGGGCCTGCACAGCGCCTaGAGGACCCTGCTGTACCCG +
Preference number: 5 (lower is better)
Translates to: PLKHCFQSLGHRVKTQHLGLHSA*RTLLYP
Trigger: CGGGTACAGCAGGGTCCTCAAGGCGCTGTGCAGGCC...CAGATGCTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 90 bp TCGTCCATGTCAAACTCGTCGTCTGACTCGCCCTCCTCGAAGATCTaGTTGAGCACTGGGGCACTCTTGCGAGACGTCAGGCGATTGGTG +
Preference number: 5 (lower is better)
Translates to: SSMSNSSSDSPSSKI*LSTGALLRDVRRLV
Trigger: CACCAATCGCCTGACGTCTCGCAAGAGTGCCCCAGTGCTCAACCAGATCTTCGAGGAGGGCGAGTCAGACGACGAGTTTGACATGGACGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp ACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGGGTGGCACCGTGTACTaGCAGTCCATGATCATGGTC +
Preference number: 5 (lower is better)
Translates to: TKLLNHHLRMSCLLVRVLGGTVY*QSMIMV
Trigger: GACCATGATCATGGACTGCAAGTACACGGTGCCACC...CAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp TGCCTCAGAGCATGGAGTTTCCCTATCACCGGAGGTCAAGACAGGAATTTGGGCCGAGACGTCAGGCGATaGGTGACCGATGGCTTCCGG +
Preference number: 5 (lower is better)
Translates to: CLRAWSFPITGGQDRNLGRDVRR*VTDGFR
Trigger: CCGGAAGCCATCGGTCACCAATCGCCTGACGTCTCG...GCCCAAATTCCTGTCTTGACCTCCGGTGATAGGGAAACTCCATGCTCTGAGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp CACACAGACGTGGCTCCGTCTCTGAGAACCACGCTGGTTTCTGGCCCTTGGAAGTTGTTCCTCAGCTTCTaGGTCCTCACCGGGTCAAGG +
Preference number: 5 (lower is better)
Translates to: HTDVAPSLRTTLVSGPWKLFLSF*VLTGSR
Trigger: CCTTGACCCGGTGAGGACCAAGAAGCTGAGGAACAA...CTTCCAAGGGCCAGAAACCAGCGTGGTTCTCAGAGACGGAGCCACGTCTGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS TCA 90 bp GACATTGTCACCAGCCCTAGCAGGAGACTGCGGGACTGTGGCATGTaGCAGAGGGGTGGCAGTGAGATCATCTTCAAGGTCTTGGGGTAC +
Preference number: 5 (lower is better)
Translates to: DIVTSPSRRLRDCGM*QRGGSEIIFKVLGY
Trigger: GTACCCCAAGACCTTGAAGATGATCTCACTGCCACCCCTCTGTCACATGCCACAGTCCCGCAGTCTCCTGCTAGGGCTGGTGACAATGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS-3UTR CAA 90 bp GCCCGCTCTGAGACACATGCTCAGCTGCACTGTTGTCCCTCAGAACAGGGCAGCAGAGAGGCTCTCCTTTaGGGGTCTCTCTGTAGCATT +
Preference number: 5 (lower is better)
Translates to: ARSETHAQLHCCPSEQGSREALL*GSLCSI
Trigger: AATGCTACAGAGAGACCCCAAAAGGAGAGCCTCTCT...GCTGCCCTGTTCTGAGGGACAACAGTGCAGCTGAGCATGTGTCTCAGAGCGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 90 bp CCTCGGAGAGGTTCTTGTAGGACACGAGGGGAATGTTATACTTGGTaGCTGGTGATGGGTCCACTCCCTGGAGCCAAGGGTGGCTTTCAA +
Preference number: 5 (lower is better)
Translates to: PRRGSCRTRGECYTW*LVMGPLPGAKGGFQ
Trigger: TTGAAAGCCACCCTTGGCTCCAGGGAGTGGACCCATCACCAGCCACCAAGTATAACATTCCCCTCGTGTCCTACAAGAACCTCTCCGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS CCA 90 bp CTTCCTCGGAGAGGTTCTTGTAGGACACGAGGGGAATGTTATACTTaGTGGCTGGTGATGGGTCCACTCCCTGGAGCCAAGGGTGGCTTT +
Preference number: 5 (lower is better)
Translates to: LPRRGSCRTRGECYT*WLVMGPLPGAKGGF
Trigger: AAAGCCACCCTTGGCTCCAGGGAGTGGACCCATCACCAGCCACCAAGTATAACATTCCCCTCGTGTCCTACAAGAACCTCTCCGAGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS-3UTR CAA 90 bp ACCAAGCTCCTGAACCACCACCTCAGGATGTCCTGCCTCCTCGTCAGAGTGCTGAGAGAGGCTCTCCTTTaGGGGTCTCTCTGTAGCATT +
Preference number: 5 (lower is better)
Translates to: TKLLNHHLRMSCLLVRVLREALL*GSLCSI
Trigger: AATGCTACAGAGAGACCCCAAAAGGAGAGCCTCTCT...CAGCACTCTGACGAGGAGGCAGGACATCCTGAGGTGGTGGTTCAGGAGCTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp CACAGGCCGCTTAAACACTGCTTTCAATCCCTTGGGCACCGTGTGAAAACCCAGAACTGGGCCTTGATGTaGCTGGGGCTAGCAGACCTG +
Preference number: 5 (lower is better)
Translates to: HRPLKHCFQSLGHRVKTQNWALM*LGLADL
Trigger: CAGGTCTGCTAGCCCCAGCAACATCAAGGCCCAGTT...CTGGGTTTTCACACGGTGCCCAAGGGATTGAAAGCAGTGTTTAAGCGGCCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 90 bp TTATACTTGGTGGCTGGTGATGGGTCCACTCCCTGGAGCCAAGGGTaGCTTTCAATCTCTTCCAGAGAGGCTCTCCTTTTGGGGTCTCTC +
Preference number: 5 (lower is better)
Translates to: LYLVAGDGSTPWSQG*LSISSREALLLGSL
Trigger: GAGAGACCCCAAAAGGAGAGCCTCTCTGGAAGAGATTGAAAGCCACCCTTGGCTCCAGGGAGTGGACCCATCACCAGCCACCAAGTATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS CCA 90 bp ACGAGGGGAATGTTATACTTGGTGGCTGGTGATGGGTCCACTCCCTaGAGCCAAGGGTGGCTTTCAATCTCTTCCAGAGAGGCTCTCCTT +
Preference number: 5 (lower is better)
Translates to: TRGMLYLVAGDGSTP*SQGWLSISSREALL
Trigger: AAGGAGAGCCTCTCTGGAAGAGATTGAAAGCCACCCTTGGCTCCAGGGAGTGGACCCATCACCAGCCACCAAGTATAACATTCCCCTCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS-3UTR CAA 90 bp CCAAGATCAGGGAGGAGGCCTGCCTCAGGAGATAGCTATCAGTCCGGAGTCGTCTGGGGTACATCAATTTaGGTTGGCCATGACTGCCTA +
Preference number: 5 (lower is better)
Translates to: PRSGRRPASGDSYQSGVVWGTSI*VGHDCL
Trigger: TAGGCAGTCATGGCCAACCAAAATTGATGTACCCCA...GACGACTCCGGACTGATAGCTATCTCCTGAGGCAGGCCTCCTCCCTGATCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp GTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGGCTCCGGGAGCTCATCTTTCTaGGCTGGGTCACACAGGCCT +
Preference number: 5 (lower is better)
Translates to: VYCNAPIDISPGSHRRGSGSSSF*AGSHRP
Trigger: AGGCCTGTGTGACCCAGCCAAGAAAGATGAGCTCCC...GGAGCCACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS TCA 90 bp GAGGTTCTTGTAGGACACGAGGGGAATGTTATACTTGGTGGCTGGTaGTGGGTCCACTCCCTGGAGCCAAGGGTGGCTTTCAATCTCTTC +
Preference number: 5 (lower is better)
Translates to: EVLVGHEGNVILGGW*WVHSLEPRVAFNLF
Trigger: GAAGAGATTGAAAGCCACCCTTGGCTCCAGGGAGTGGACCCATCACCAGCCACCAAGTATAACATTCCCCTCGTGTCCTACAAGAACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS-3UTR CAA 90 bp GCGACAGTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTAACTGGGCCTTGATGTaGCTGGGGCTAGCAGACCTG +
Preference number: 5 (lower is better)
Translates to: ATVYCNAPIDISPGSHRRNWALM*LGLADL
Trigger: CAGGTCTGCTAGCCCCAGCAACATCAAGGCCCAGTT...ACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAACTGTCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp GACCAATTAGCTGACAAGTTTGTGTTCTCAGCACATACCAACTCTGGCTCTAGGCGAGACGTCAGGCGATaGGTGACCGATGGCTTCCGG +
Preference number: 5 (lower is better)
Translates to: DQLADKFVFSAHTNSGSRRDVRR*VTDGFR
Trigger: CCGGAAGCCATCGGTCACCAATCGCCTGACGTCTCG...CCTAGAGCCAGAGTTGGTATGTGCTGAGAACACAAACTTGTCAGCTAATTGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp GTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTGGCTCCTCCTCGAAGATCTGGTaGAGCACTGGGGCACTCTTG +
Preference number: 5 (lower is better)
Translates to: VYCNAPIDISPGSHRRGSSSKIW*STGALL
Trigger: CAAGAGTGCCCCAGTGCTCAACCAGATCTTCGAGGA...GGAGCCACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 90 bp TATGTCTACTGCAGGGGCATCGTACTCATCGCCAAGCAGGATTTCTaGAGCAGAGTATGCAAGAGACCCGCAGCTCGTGGTGAGTTTCTT +
Preference number: 5 (lower is better)
Translates to: YVYCRGIVLIAKQDF*SRVCKRPAARGEFL
Trigger: AAGAAACTCACCACGAGCTGCGGGTCTCTTGCATACTCTGCTCCAGAAATCCTGCTTGGCGATGAGTACGATGCCCCTGCAGTAGACATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118886.9
ENSMUST00000119215.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS CCA 90 bp GTGGCATGTGACAGAGGGGTGGCAGTGAGATCATCTTCAAGGTCTTaGGGTACATCAATTTTGGTTGGCCATGACTGCCTAAACTGGGCC +
Preference number: 5 (lower is better)
Translates to: VACDRGVAVRSSSRS*GTSILVGHDCLNWA
Trigger: GGCCCAGTTTAGGCAGTCATGGCCAACCAAAATTGATGTACCCCAAGACCTTGAAGATGATCTCACTGCCACCCCTCTGTCACATGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS-3UTR CAA 90 bp TATTGGTTAAGACAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGTGGCCATTGAGGACATaGTCACCAGCCCTAGCAGGA +
Preference number: 5 (lower is better)
Translates to: YWLRQTGVGAQTVALRFSWPLRT*SPALAG
Trigger: TCCTGCTAGGGCTGGTGACAATGTCCTCAATGGCCA...CGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTGTCTTAACCAATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp GCGACAGTTTATTGCAATGCCCCTATAGACATCTCTCCTGGCTCACACAGACGTAGGGGAATGTTATACTaGGTGGCTGGTGATGGGTCC +
Preference number: 5 (lower is better)
Translates to: ATVYCNAPIDISPGSHRRRGMLY*VAGDGS
Trigger: GGACCCATCACCAGCCACCAAGTATAACATTCCCCT...ACGTCTGTGTGAGCCAGGAGAGATGTCTATAGGGGCATTGCAATAAACTGTCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp GACCAATTAGCTGACAAGTTTGTGTTCTCAGCACATACCAACTCTGGCTCTAGGGGGAGCTCATCTTTCTaGGCTGGGTCACACAGGCCT +
Preference number: 5 (lower is better)
Translates to: DQLADKFVFSAHTNSGSRGSSSF*AGSHRP
Trigger: AGGCCTGTGTGACCCAGCCAAGAAAGATGAGCTCCC...CCTAGAGCCAGAGTTGGTATGTGCTGAGAACACAAACTTGTCAGCTAATTGGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp CCCTCCAGGTTAAGTGCAGAACATGGATTTCTAAGCGCTCCATTTACGTTGGGTTTGTTCCTCAGCTTCTaGGTCCTCACCGGGTCAAGG +
Preference number: 5 (lower is better)
Translates to: PSRLSAEHGFLSAPFTLGLFLSF*VLTGSR
Trigger: CCTTGACCCGGTGAGGACCAAGAAGCTGAGGAACAA...ACCCAACGTAAATGGAGCGCTTAGAAATCCATGTTCTGCACTTAACCTGGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp CAGGAATTTGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGTCAGAGCAGCCCTTCCTaGCGGCTGCGCTGGATGTTC +
Preference number: 5 (lower is better)
Translates to: QEFGLFTRKRKHFPSRLSQSSPS*RLRWMF
Trigger: GAACATCCAGCGCAGCCGCAAGGAAGGGCTGCTCTG...ACTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS TCA 90 bp TTGGGGTGCTGCACTAGTTTCATGCACCTCACTTCCTGGAAGAGATaGCCAGTGGCTAGAGTGTCCAGCTTCGTCTTGTCAATGACTTTC +
Preference number: 5 (lower is better)
Translates to: LGCCTSFMHLTSWKR*PVARVSSFVLSMTF
Trigger: GAAAGTCATTGACAAGACGAAGCTGGACACTCTAGCCACTGGTCATCTCTTCCAGGAAGTGAGGTGCATGAAACTAGTGCAGCACCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000118886.9
ENSMUST00000119215.9
ENSMUST00000120173.9
ENSMUST00000134949.8
ENSMUST00000139181.2
CDS-3UTR CAA 90 bp TATTGGTTAAGACAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGTGGGGTACATCAATTTaGGTTGGCCATGACTGCCTA +
Preference number: 5 (lower is better)
Translates to: YWLRQTGVGAQTVALRFSWGTSI*VGHDCL
Trigger: TAGGCAGTCATGGCCAACCAAAATTGATGTACCCCA...CGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTGTCTTAACCAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp ACAGGAATTTGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGTGCCTAAACTGGGCCTaGATGTTGCTGGGGCTAGCA +
Preference number: 5 (lower is better)
Translates to: TGIWAFHKETKAFSLQVKCLNWA*MLLGLA
Trigger: TGCTAGCCCCAGCAACATCAAGGCCCAGTTTAGGCA...CTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp ACAGGAATTTGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGTTGCTCCTGTGGCCATaGAGGACATTGTCACCAGCC +
Preference number: 5 (lower is better)
Translates to: TGIWAFHKETKAFSLQVKLLLWP*RTLSPA
Trigger: GGCTGGTGACAATGTCCTCAATGGCCACAGGAGCAA...CTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp CAGGAATTTGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGTTCCTCGAAGATCTGGTaGAGCACTGGGGCACTCTTG +
Preference number: 5 (lower is better)
Translates to: QEFGLFTRKRKHFPSRLSSSKIW*STGALL
Trigger: CAAGAGTGCCCCAGTGCTCAACCAGATCTTCGAGGA...ACTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp TATTGGTTAAGACAAACAGGTGTGGGCGCTCAAACCGTGGCTCTAAGGTTCTCGATCATCTTCAAGGTCTaGGGGTACATCAATTTTGGT +
Preference number: 5 (lower is better)
Translates to: YWLRQTGVGAQTVALRFSIIFKV*GYINFG
Trigger: ACCAAAATTGATGTACCCCAAGACCTTGAAGATGAT...CGAGAACCTTAGAGCCACGGTTTGAGCGCCCACACCTGTTTGTCTTAACCAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS-3UTR CAA 90 bp CAGGAATTTGGGCTTTTCACAAGGAAACGAAAGCATTTTCCCTCCAGGTTAAGTATCATCTTCAAGGTCTaGGGGTACATCAATTTTGGT +
Preference number: 5 (lower is better)
Translates to: QEFGLFTRKRKHFPSRLSIIFKV*GYINFG
Trigger: ACCAAAATTGATGTACCCCAAGACCTTGAAGATGAT...ACTTAACCTGGAGGGAAAATGCTTTCGTTTCCTTGTGAAAAGCCCAAATTCCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 72 bp CTGTACCCGACGGGGTCCCACCAGAGCCTCCCTGGCTaGCACCACCCGTGCCCTGCTCACCCGGGCTGGCCT +
Preference number: 6 (lower is better)
Translates to: LYPTGSHQSLPG*HHPCPAHPGWP
Trigger: AGGCCAGCCCGGGTGAGCAGGGCACGGGTGGTGGCAGCCAGGGAGGCTCTGGTGGGACCCCGTCGGGTACAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 72 bp CCTGCTGTACCCGACGGGGTCCCACCAGAGCCTCCCTaGCTGCCACCACCCGTGCCCTGCTCACCCGGGCTG +
Preference number: 6 (lower is better)
Translates to: PAVPDGVPPEPP*LPPPVPCSPGL
Trigger: CAGCCCGGGTGAGCAGGGCACGGGTGGTGGCAGCCAGGGAGGCTCTGGTGGGACCCCGTCGGGTACAGCAGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 72 bp GCCTTGTCCACACCGCCACCGCTGCTAGGCTTGCTCTaGCCGCCACCATCGCCCTCGCTGCCTGGTGGCCCC +
Preference number: 6 (lower is better)
Translates to: ALSTPPPLLGLL*PPPSPSLPGGP
Trigger: GGGGCCACCAGGCAGCGAGGGCGATGGTGGCGGCCAGAGCAAGCCTAGCAGCGGTGGCGGTGTGGACAAGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 90 bp TGCTCACCCGGGCTGGCCTTGTCCACACCGCCACCGCTGCTAGGCTaGCTCTGGCCGCCACCATCGCCCTCGCTGCCTGGTGGCCCCTCA +
Preference number: 6 (lower is better)
Translates to: CSPGLALSTPPPLLG*LWPPPSPSLPGGPS
Trigger: TGAGGGGCCACCAGGCAGCGAGGGCGATGGTGGCGGCCAGAGCAAGCCTAGCAGCGGTGGCGGTGTGGACAAGGCCAGCCCGGGTGAGCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 72 bp GGGCTGGCCTTGTCCACACCGCCACCGCTGCTAGGCTaGCTCTGGCCGCCACCATCGCCCTCGCTGCCTGGT +
Preference number: 6 (lower is better)
Translates to: GLALSTPPPLLG*LWPPPSPSLPG
Trigger: ACCAGGCAGCGAGGGCGATGGTGGCGGCCAGAGCAAGCCTAGCAGCGGTGGCGGTGTGGACAAGGCCAGCCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 72 bp CTGCCACCACCCGTGCCCTGCTCACCCGGGCTGGCCTaGTCCACACCGCCACCGCTGCTAGGCTTGCTCTGG +
Preference number: 6 (lower is better)
Translates to: LPPPVPCSPGLA*STPPPLLGLLW
Trigger: CCAGAGCAAGCCTAGCAGCGGTGGCGGTGTGGACAAGGCCAGCCCGGGTGAGCAGGGCACGGGTGGTGGCAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 90 bp CTGAGGCGGGGGAGGGTGAGGATGAGTCAGGGCCTGCACAGCGCCTaGAGGACCCTGCTGTACCCGACGGGGTCCCACCAGAGCCTCCCT +
Preference number: 6 (lower is better)
Translates to: LRRGRVRMSQGLHSA*RTLLYPTGSHQSLP
Trigger: AGGGAGGCTCTGGTGGGACCCCGTCGGGTACAGCAGGGTCCTCAAGGCGCTGTGCAGGCCCTGACTCATCCTCACCCTCCCCCGCCTCAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 72 bp GGGAGGGTGAGGATGAGTCAGGGCCTGCACAGCGCCTaGAGGACCCTGCTGTACCCGACGGGGTCCCACCAG +
Preference number: 6 (lower is better)
Translates to: GRVRMSQGLHSA*RTLLYPTGSHQ
Trigger: CTGGTGGGACCCCGTCGGGTACAGCAGGGTCCTCAAGGCGCTGTGCAGGCCCTGACTCATCCTCACCCTCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS TCA 72 bp GCACTGGGGCACTCTTGCGAGACGTCAGGCGATTGGTaGCCGATGGCTTCCGGCGCAGCACCACCTGCGTGG +
Preference number: 6 (lower is better)
Translates to: ALGHSCETSGDW*PMASGAAPPAW
Trigger: CCACGCAGGTGGTGCTGCGCCGGAAGCCATCGGTCACCAATCGCCTGACGTCTCGCAAGAGTGCCCCAGTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 72 bp CACTGGCTGCGGGCTTCATGCTTGCAGGTGGAACAGTaGACAGTGCCGGCCCAGCCAGCTCCGGGAGCTCAT +
Preference number: 6 (lower is better)
Translates to: HWLRASCLQVEQ*TVPAQPAPGAH
Trigger: ATGAGCTCCCGGAGCTGGCTGGGCCGGCACTGTCCACTGTTCCACCTGCAAGCATGAAGCCCGCAGCCAGTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 72 bp GGCACTCTTGCGAGACGTCAGGCGATTGGTGACCGATaGCTTCCGGCGCAGCACCACCTGCGTGGACAGGGA +
Preference number: 6 (lower is better)
Translates to: GTLARRQAIGDR*LPAQHHLRGQG
Trigger: TCCCTGTCCACGCAGGTGGTGCTGCGCCGGAAGCCATCGGTCACCAATCGCCTGACGTCTCGCAAGAGTGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 72 bp CAGCTGGCGGGGCTGGAGGCGCAGAGCAGCCCTTCCTaGCGGCTGCGCTGGATGTTCACGGAGATGGTCTTT +
Preference number: 6 (lower is better)
Translates to: QLAGLEAQSSPS*RLRWMFTEMVF
Trigger: AAAGACCATCTCCGTGAACATCCAGCGCAGCCGCAAGGAAGGGCTGCTCTGCGCCTCCAGCCCCGCCAGCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 72 bp CGGGGCTGGAGGCGCAGAGCAGCCCTTCCTTGCGGCTaGGCTGGATGTTCACGGAGATGGTCTTTTCGCACA +
Preference number: 6 (lower is better)
Translates to: RGWRRRAALPCG*AGCSRRWSFRT
Trigger: TGTGCGAAAAGACCATCTCCGTGAACATCCAGCGCAGCCGCAAGGAAGGGCTGCTCTGCGCCTCCAGCCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 72 bp AGCTGGCGGGGCTGGAGGCGCAGAGCAGCCCTTCCTTaGGGCTGCGCTGGATGTTCACGGAGATGGTCTTTT +
Preference number: 6 (lower is better)
Translates to: SWRGWRRRAALP*GCAGCSRRWSF
Trigger: AAAAGACCATCTCCGTGAACATCCAGCGCAGCCGCAAGGAAGGGCTGCTCTGCGCCTCCAGCCCCGCCAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 72 bp TTGAGCACTGGGGCACTCTTGCGAGACGTCAGGCGATaGGTGACCGATGGCTTCCGGCGCAGCACCACCTGC +
Preference number: 6 (lower is better)
Translates to: LSTGALLRDVRR*VTDGFRRSTTC
Trigger: GCAGGTGGTGCTGCGCCGGAAGCCATCGGTCACCAATCGCCTGACGTCTCGCAAGAGTGCCCCAGTGCTCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 90 bp AAGATCTGGTTGAGCACTGGGGCACTCTTGCGAGACGTCAGGCGATaGGTGACCGATGGCTTCCGGCGCAGCACCACCTGCGTGGACAGG +
Preference number: 6 (lower is better)
Translates to: KIWLSTGALLRDVRR*VTDGFRRSTTCVDR
Trigger: CCTGTCCACGCAGGTGGTGCTGCGCCGGAAGCCATCGGTCACCAATCGCCTGACGTCTCGCAAGAGTGCCCCAGTGCTCAACCAGATCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 90 bp TCTGACTCGCCCTCCTCGAAGATCTGGTTGAGCACTGGGGCACTCTaGCGAGACGTCAGGCGATTGGTGACCGATGGCTTCCGGCGCAGC +
Preference number: 6 (lower is better)
Translates to: SDSPSSKIWLSTGAL*RDVRRLVTDGFRRS
Trigger: GCTGCGCCGGAAGCCATCGGTCACCAATCGCCTGACGTCTCGCAAGAGTGCCCCAGTGCTCAACCAGATCTTCGAGGAGGGCGAGTCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 72 bp GCGTCTCGGTCCGCGATGTCCCCGAGCACCATGCGCTaGATGATGCTGTTGTGCTCTTCCTCGGAGAGGTTC +
Preference number: 6 (lower is better)
Translates to: ASRSAMSPSTMR*MMLLCSSSERF
Trigger: GAACCTCTCCGAGGAAGAGCACAACAGCATCATCCAGCGCATGGTGCTCGGGGACATCGCGGACCGAGACGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS CAA 90 bp ACAGTGGACAGTGCCGGCCCAGCCAGCTCCGGGAGCTCATCTTTCTaGGCTGGGTCACACAGGCCTTTGCTCCTGTGGCCATTGAGGACA +
Preference number: 6 (lower is better)
Translates to: TVDSAGPASSGSSSF*AGSHRPLLLWPLRT
Trigger: TGTCCTCAATGGCCACAGGAGCAAAGGCCTGTGTGACCCAGCCAAGAAAGATGAGCTCCCGGAGCTGGCTGGGCCGGCACTGTCCACTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 72 bp TGCGGGCTTCATGCTTGCAGGTGGAACAGTGGACAGTaGCGGCCCAGCCAGCTCCGGGAGCTCATCTTTCTT +
Preference number: 6 (lower is better)
Translates to: CGLHACRWNSGQ*RPSQLRELIFL
Trigger: AAGAAAGATGAGCTCCCGGAGCTGGCTGGGCCGGCACTGTCCACTGTTCCACCTGCAAGCATGAAGCCCGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 72 bp TGTGAGCCTAGGCACAGGCTCACGAGTTTGAGGCTCTaGACAAGCTCTGCACCACGTGGAGCGGCAGAGGCT +
Preference number: 6 (lower is better)
Translates to: CEPRHRLTSLRL*TSSAPRGAAEA
Trigger: AGCCTCTGCCGCTCCACGTGGTGCAGAGCTTGTGCAGAGCCTCAAACTCGTGAGCCTGTGCCTAGGCTCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 72 bp GGGGCGCTGATGCACATCTTCCACGTGGACTTCTCCTaGACCTTCACGCTGGAGAACAAGGCCTTCTGCGGG +
Preference number: 6 (lower is better)
Translates to: GALMHIFHVDFS*TFTLENKAFCG
Trigger: CCCGCAGAAGGCCTTGTTCTCCAGCGTGAAGGTGCAGGAGAAGTCCACGTGGAAGATGTGCATCAGCGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 72 bp CTGGAGGCGCAGAGCAGCCCTTCCTTGCGGCTGCGCTaGATGTTCACGGAGATGGTCTTTTCGCACAGAGGT +
Preference number: 6 (lower is better)
Translates to: LEAQSSPSLRLR*MFTEMVFSHRG
Trigger: ACCTCTGTGCGAAAAGACCATCTCCGTGAACATCCAGCGCAGCCGCAAGGAAGGGCTGCTCTGCGCCTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 72 bp CTGCACCCTGCAGACACGCGGGGTGGCACCGTGTACTaGCAGTCCATGATCATGGTCAGTGTCTCGCTGTCG +
Preference number: 6 (lower is better)
Translates to: LHPADTRGGTVY*QSMIMVSVSLS
Trigger: CGACAGCGAGACACTGACCATGATCATGGACTGCAAGTACACGGTGCCACCCCGCGTGTCTGCAGGGTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS TCA 72 bp CTCGGTCCGCGATGTCCCCGAGCACCATGCGCTGGATaGTGCTGTTGTGCTCTTCCTCGGAGAGGTTCTTGT +
Preference number: 6 (lower is better)
Translates to: LGPRCPRAPCAG*CCCALPRRGSC
Trigger: ACAAGAACCTCTCCGAGGAAGAGCACAACAGCATCATCCAGCGCATGGTGCTCGGGGACATCGCGGACCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS TCA 72 bp ACTCGTCGTCTGACTCGCCCTCCTCGAAGATCTGGTTaGGCACTGGGGCACTCTTGCGAGACGTCAGGCGAT +
Preference number: 6 (lower is better)
Translates to: TRRLTRPPRRSG*ALGHSCETSGD
Trigger: ATCGCCTGACGTCTCGCAAGAGTGCCCCAGTGCTCAACCAGATCTTCGAGGAGGGCGAGTCAGACGACGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS TCA 72 bp GGGCGGCAGGTTCTCGTCCATGTCAAACTCGTCGTCTaGCTCGCCCTCCTCGAAGATCTGGTTGAGCACTGG +
Preference number: 6 (lower is better)
Translates to: GRQVLVHVKLVV*LALLEDLVEHW
Trigger: CCAGTGCTCAACCAGATCTTCGAGGAGGGCGAGTCAGACGACGAGTTTGACATGGACGAGAACCTGCCGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 72 bp CCATTGAGGACATTGTCACCAGCCCTAGCAGGAGACTaGGGGACTGTGGCATGTGACAGAGGGGTGGCAGTG +
Preference number: 6 (lower is better)
Translates to: PLRTLSPALAGD*GTVACDRGVAV
Trigger: CACTGCCACCCCTCTGTCACATGCCACAGTCCCGCAGTCTCCTGCTAGGGCTGGTGACAATGTCCTCAATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS CCA 72 bp TGTGATCAGGTCCCTGCACCCTGCAGACACGCGGGGTaGCACCGTGTACTTGCAGTCCATGATCATGGTCAG +
Preference number: 6 (lower is better)
Translates to: CDQVPAPCRHAG*HRVLAVHDHGQ
Trigger: CTGACCATGATCATGGACTGCAAGTACACGGTGCCACCCCGCGTGTCTGCAGGGTGCAGGGACCTGATCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS CCA 72 bp GCCCTTCCTTGCGGCTGCGCTGGATGTTCACGGAGATaGTCTTTTCGCACAGAGGTAGCTGGAGCGCGTTGT +
Preference number: 6 (lower is better)
Translates to: ALPCGCAGCSRR*SFRTEVAGARC
Trigger: ACAACGCGCTCCAGCTACCTCTGTGCGAAAAGACCATCTCCGTGAACATCCAGCGCAGCCGCAAGGAAGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 72 bp CCCTCCTCGAAGATCTGGTTGAGCACTGGGGCACTCTaGCGAGACGTCAGGCGATTGGTGACCGATGGCTTC +
Preference number: 6 (lower is better)
Translates to: PSSKIWLSTGAL*RDVRRLVTDGF
Trigger: GAAGCCATCGGTCACCAATCGCCTGACGTCTCGCAAGAGTGCCCCAGTGCTCAACCAGATCTTCGAGGAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 90 bp ATCAGGTCCCTGCACCCTGCAGACACGCGGGGTGGCACCGTGTACTaGCAGTCCATGATCATGGTCAGTGTCTCGCTGTCGTTGGCTTCT +
Preference number: 6 (lower is better)
Translates to: IRSLHPADTRGGTVY*QSMIMVSVSLSLAS
Trigger: AGAAGCCAACGACAGCGAGACACTGACCATGATCATGGACTGCAAGTACACGGTGCCACCCCGCGTGTCTGCAGGGTGCAGGGACCTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS CAA 90 bp TTGGCTGGGTCACACAGGCCTTTGCTCCTGTGGCCATTGAGGACATaGTCACCAGCCCTAGCAGGAGACTGCGGGACTGTGGCATGTGAC +
Preference number: 6 (lower is better)
Translates to: LAGSHRPLLLWPLRT*SPALAGDCGTVACD
Trigger: GTCACATGCCACAGTCCCGCAGTCTCCTGCTAGGGCTGGTGACAATGTCCTCAATGGCCACAGGAGCAAAGGCCTGTGTGACCCAGCCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 90 bp TCCATGTCAAACTCGTCGTCTGACTCGCCCTCCTCGAAGATCTGGTaGAGCACTGGGGCACTCTTGCGAGACGTCAGGCGATTGGTGACC +
Preference number: 6 (lower is better)
Translates to: SMSNSSSDSPSSKIW*STGALLRDVRRLVT
Trigger: GGTCACCAATCGCCTGACGTCTCGCAAGAGTGCCCCAGTGCTCAACCAGATCTTCGAGGAGGGCGAGTCAGACGACGAGTTTGACATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 90 bp TGCACTGTGCCTGGTGAGGCAATGTTCATCTTCAGCCGGCTCAGCTaGGGCGGCAGGTTCTCGTCCATGTCAAACTCGTCGTCTGACTCG +
Preference number: 6 (lower is better)
Translates to: CTVPGEAMFIFSRLS*GGRFSSMSNSSSDS
Trigger: CGAGTCAGACGACGAGTTTGACATGGACGAGAACCTGCCGCCCAAGCTGAGCCGGCTGAAGATGAACATTGCCTCACCAGGCACAGTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS TCA 72 bp TTTCCTGCGGTGGTAGCGCTTGTGCACTGTGCCTGGTaGGGCAATGTTCATCTTCAGCCGGCTCAGCTTGGG +
Preference number: 6 (lower is better)
Translates to: FPAVVALVHCAW*GNVHLQPAQLG
Trigger: CCCAAGCTGAGCCGGCTGAAGATGAACATTGCCTCACCAGGCACAGTGCACAAGCGCTACCACCGCAGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 72 bp CCTGGCTTTTCCTGCGGTGGTAGCGCTTGTGCACTGTaGCTGGTGAGGCAATGTTCATCTTCAGCCGGCTCA +
Preference number: 6 (lower is better)
Translates to: PGFSCGGSACAL*LVRQCSSSAGS
Trigger: TGAGCCGGCTGAAGATGAACATTGCCTCACCAGGCACAGTGCACAAGCGCTACCACCGCAGGAAAAGCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS GCA 72 bp AAGGCCTTCTGCGGGTCCAGAATGTACTTGGCGCCATaGAGCTGTGAGCCTAGGCACAGGCTCACGAGTTTG +
Preference number: 6 (lower is better)
Translates to: KAFCGSRMYLAP*SCEPRHRLTSL
Trigger: CAAACTCGTGAGCCTGTGCCTAGGCTCACAGCTGCATGGCGCCAAGTACATTCTGGACCCGCAGAAGGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 72 bp TTGGCTGGGTCACACAGGCCTTTGCTCCTGTGGCCATaGAGGACATTGTCACCAGCCCTAGCAGGAGACTGC +
Preference number: 6 (lower is better)
Translates to: LAGSHRPLLLWP*RTLSPALAGDC
Trigger: GCAGTCTCCTGCTAGGGCTGGTGACAATGTCCTCAATGGCCACAGGAGCAAAGGCCTGTGTGACCCAGCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 72 bp CCTGGTGAGGCAATGTTCATCTTCAGCCGGCTCAGCTaGGGCGGCAGGTTCTCGTCCATGTCAAACTCGTCG +
Preference number: 6 (lower is better)
Translates to: PGEAMFIFSRLS*GGRFSSMSNSS
Trigger: CGACGAGTTTGACATGGACGAGAACCTGCCGCCCAAGCTGAGCCGGCTGAAGATGAACATTGCCTCACCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 90 bp TCATCTTTCTTGGCTGGGTCACACAGGCCTTTGCTCCTGTGGCCATaGAGGACATTGTCACCAGCCCTAGCAGGAGACTGCGGGACTGTG +
Preference number: 6 (lower is better)
Translates to: SSFLAGSHRPLLLWP*RTLSPALAGDCGTV
Trigger: CACAGTCCCGCAGTCTCCTGCTAGGGCTGGTGACAATGTCCTCAATGGCCACAGGAGCAAAGGCCTGTGTGACCCAGCCAAGAAAGATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS TCA 72 bp GTAGGACACGAGGGGAATGTTATACTTGGTGGCTGGTaGTGGGTCCACTCCCTGGAGCCAAGGGTGGCTTTC +
Preference number: 6 (lower is better)
Translates to: VGHEGNVILGGW*WVHSLEPRVAF
Trigger: GAAAGCCACCCTTGGCTCCAGGGAGTGGACCCATCACCAGCCACCAAGTATAACATTCCCCTCGTGTCCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS GCA 72 bp TTCTCCTGCACCTTCACGCTGGAGAACAAGGCCTTCTaGGGGTCCAGAATGTACTTGGCGCCATGCAGCTGT +
Preference number: 6 (lower is better)
Translates to: FSCTFTLENKAF*GSRMYLAPCSC
Trigger: ACAGCTGCATGGCGCCAAGTACATTCTGGACCCGCAGAAGGCCTTGTTCTCCAGCGTGAAGGTGCAGGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 72 bp TGCAGGGGCATCGTACTCATCGCCAAGCAGGATTTCTaGAGCAGAGTATGCAAGAGACCCGCAGCTCGTGGT +
Preference number: 6 (lower is better)
Translates to: CRGIVLIAKQDF*SRVCKRPAARG
Trigger: ACCACGAGCTGCGGGTCTCTTGCATACTCTGCTCCAGAAATCCTGCTTGGCGATGAGTACGATGCCCCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000118886.9
ENSMUST00000119215.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS CCA 72 bp CTGGTGAGGCAATGTTCATCTTCAGCCGGCTCAGCTTaGGCGGCAGGTTCTCGTCCATGTCAAACTCGTCGT +
Preference number: 6 (lower is better)
Translates to: LVRQCSSSAGSA*AAGSRPCQTRR
Trigger: ACGACGAGTTTGACATGGACGAGAACCTGCCGCCCAAGCTGAGCCGGCTGAAGATGAACATTGCCTCACCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 72 bp GAGATGGTCTTTTCGCACAGAGGTAGCTGGAGCGCGTaGTTCCTCAGCTTCTTGGTCCTCACCGGGTCAAGG +
Preference number: 6 (lower is better)
Translates to: EMVFSHRGSWSA*FLSFLVLTGSR
Trigger: CCTTGACCCGGTGAGGACCAAGAAGCTGAGGAACAACGCGCTCCAGCTACCTCTGTGCGAAAAGACCATCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 90 bp ATGTTCACGGAGATGGTCTTTTCGCACAGAGGTAGCTGGAGCGCGTaGTTCCTCAGCTTCTTGGTCCTCACCGGGTCAAGGTCAGCAGAG +
Preference number: 6 (lower is better)
Translates to: MFTEMVFSHRGSWSA*FLSFLVLTGSRSAE
Trigger: CTCTGCTGACCTTGACCCGGTGAGGACCAAGAAGCTGAGGAACAACGCGCTCCAGCTACCTCTGTGCGAAAAGACCATCTCCGTGAACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CCA 72 bp TCTTTCTTGGCTGGGTCACACAGGCCTTTGCTCCTGTaGCCATTGAGGACATTGTCACCAGCCCTAGCAGGA +
Preference number: 6 (lower is better)
Translates to: SFLAGSHRPLLL*PLRTLSPALAG
Trigger: TCCTGCTAGGGCTGGTGACAATGTCCTCAATGGCCACAGGAGCAAAGGCCTGTGTGACCCAGCCAAGAAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
CDS CAA 90 bp TGGAGCCAAGGGTGGCTTTCAATCTCTTCCAGAGAGGCTCTCCTTTaGGGGTCTCTCTGTAGCATTCGTGTGATCAGGTCCCTGCACCCT +
Preference number: 6 (lower is better)
Translates to: WSQGWLSISSREALL*GSLCSIRVIRSLHP
Trigger: AGGGTGCAGGGACCTGATCACACGAATGCTACAGAGAGACCCCAAAAGGAGAGCCTCTCTGGAAGAGATTGAAAGCCACCCTTGGCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS CCA 72 bp AGAGGTTCTTGTAGGACACGAGGGGAATGTTATACTTaGTGGCTGGTGATGGGTCCACTCCCTGGAGCCAAG +
Preference number: 6 (lower is better)
Translates to: RGSCRTRGECYT*WLVMGPLPGAK
Trigger: CTTGGCTCCAGGGAGTGGACCCATCACCAGCCACCAAGTATAACATTCCCCTCGTGTCCTACAAGAACCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS CCA 72 bp GGTACATCAATTTTGGTTGGCCATGACTGCCTAAACTaGGCCTTGATGTTGCTGGGGCTAGCAGACCTGGTC +
Preference number: 6 (lower is better)
Translates to: GTSILVGHDCLN*ALMLLGLADLV
Trigger: GACCAGGTCTGCTAGCCCCAGCAACATCAAGGCCCAGTTTAGGCAGTCATGGCCAACCAAAATTGATGTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS CAA 72 bp GGGTGGCTTTCAATCTCTTCCAGAGAGGCTCTCCTTTaGGGGTCTCTCTGTAGCATTCGTGTGATCAGGTCC +
Preference number: 6 (lower is better)
Translates to: GWLSISSREALL*GSLCSIRVIRS
Trigger: GGACCTGATCACACGAATGCTACAGAGAGACCCCAAAAGGAGAGCCTCTCTGGAAGAGATTGAAAGCCACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS TCA 72 bp TGCACTAGTTTCATGCACCTCACTTCCTGGAAGAGATaGCCAGTGGCTAGAGTGTCCAGCTTCGTCTTGTCA +
Preference number: 6 (lower is better)
Translates to: CTSFMHLTSWKR*PVARVSSFVLS
Trigger: TGACAAGACGAAGCTGGACACTCTAGCCACTGGTCATCTCTTCCAGGAAGTGAGGTGCATGAAACTAGTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000118886.9
ENSMUST00000119215.9
ENSMUST00000120173.9
ENSMUST00000134949.8
ENSMUST00000139181.2
CDS CCA 72 bp GACAGAGGGGTGGCAGTGAGATCATCTTCAAGGTCTTaGGGTACATCAATTTTGGTTGGCCATGACTGCCTA +
Preference number: 6 (lower is better)
Translates to: DRGVAVRSSSRS*GTSILVGHDCL
Trigger: TAGGCAGTCATGGCCAACCAAAATTGATGTACCCCAAGACCTTGAAGATGATCTCACTGCCACCCCTCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8
CDS GCA 72 bp CTCACCTGTGAAGACATGCCTGGCAAGTTTGACCACTaGAAAATGACCTCGACCCAAGGTTTTATCCAGATC +
Preference number: 6 (lower is better)
Translates to: LTCEDMPGKFDH*KMTSTQGFIQI
Trigger: GATCTGGATAAAACCTTGGGTCGAGGTCATTTTGCAGTGGTCAAACTTGCCAGGCATGTCTTCACAGGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000118886.9
ENSMUST00000119215.9
ENSMUST00000120173.9
ENSMUST00000134949.8
ENSMUST00000139181.2
ENSMUST00000146832.8
CDS CAA 72 bp GTGAGATCATCTTCAAGGTCTTGGGGTACATCAATTTaGGTTGGCCATGACTGCCTAAACTGGGCCTTGATG +
Preference number: 6 (lower is better)
Translates to: VRSSSRSWGTSI*VGHDCLNWALM
Trigger: CATCAAGGCCCAGTTTAGGCAGTCATGGCCAACCAAAATTGATGTACCCCAAGACCTTGAAGATGATCTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118886.9
ENSMUST00000120173.9
ENSMUST00000134949.8