RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for SNPH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027457

Ensembl transcript IDs: ENSMUST00000028951.14, ENSMUST00000094456.10, ENSMUST00000109875.8, ENSMUST00000109877.10, ENSMUST00000137936.2

Found 540 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGGAGTTTTGGAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTaGTGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCC +
Preference number: 1 (lower is better)
Translates to: GEFWRHKAHGRGLLP*WLGWLPTPSACRCP
Trigger: GGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTCCAAAACTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 90 bp GAGGCTCCCAGCCAGAGGGTGAGATGCAGGACTCTACCAGCTCCCTaGAGGTGGGCCAGTCAGGTCGGAACGACCTCTCTGGGAAGAAGA +
Preference number: 1 (lower is better)
Translates to: EAPSQRVRCRTLPAP*RWASQVGTTSLGRR
Trigger: TCTTCTTCCCAGAGAGGTCGTTCCGACCTGACTGGCCCACCTCCAGGGAGCTGGTAGAGTCCTGCATCTCACCCTCTGGCTGGGAGCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 90 bp GGGAAGCCAGACCCTGCTGGGAGTGGCTCTCTGTGTTCTGGGTCCTaGCTGCCTCCATTTGAGGAGGTAATACTGGTCCGGGAGCCCAAG +
Preference number: 1 (lower is better)
Translates to: GKPDPAGSGSLCSGS*LPPFEEVILVREPK
Trigger: CTTGGGCTCCCGGACCAGTATTACCTCCTCAAATGGAGGCAGCCAGGACCCAGAACACAGAGAGCCACTCCCAGCAGGGTCTGGCTTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 90 bp GACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTaGCCAGTCCTGGCGTGGCTTTGGATCAGTTTTATCCCCTGTCTC +
Preference number: 1 (lower is better)
Translates to: DMWSSTSTRRRRLGP*PVLAWLWISFIPCL
Trigger: GAGACAGGGGATAAAACTGATCCAAAGCCACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 90 bp GCTAGGGAGACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTaGGTCCGTGGCCAGTCCTGGCGTGGCTTTGGATCAGTTTTATCC +
Preference number: 1 (lower is better)
Translates to: ARETCGAPRVHGAGG*VRGQSWRGFGSVLS
Trigger: GGATAAAACTGATCCAAAGCCACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGTCTCCCTAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 90 bp AGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTaGGTAATGGGCTGCTCACTCCACTTGCTCTGGCAAGGAGCAGAG +
Preference number: 1 (lower is better)
Translates to: RAITPACRVHRSSQG*VMGCSLHLLWQGAE
Trigger: CTCTGCTCCTTGCCAGAGCAAGTGGAGTGAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR CCA 90 bp AAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACGGGGCCTaGACCAGGAGCAGCACAGACAGGCTCCCACCACCTGGCCATGCC +
Preference number: 1 (lower is better)
Translates to: KREVRIRAFSQADGA*TRSSTDRLPPPGHA
Trigger: GGCATGGCCAGGTGGTGGGAGCCTGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR TCA 90 bp CTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTaGCGGGGCCTGGACCAGGAGCAGCACAGACAGGCTCCCACCACC +
Preference number: 1 (lower is better)
Translates to: LWEEEGSKDQSIFSG*RGLDQEQHRQAPTT
Trigger: GGTGGTGGGAGCCTGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 90 bp AGGAGCAGCACAGACAGGCTCCCACCACCTGGCCATGCCCCTACTTaGGAAGCACACTCAGAGACTCTGCTTTGGCATAGACAGGCAGAC +
Preference number: 1 (lower is better)
Translates to: RSSTDRLPPPGHAPT*EAHSETLLWHRQAD
Trigger: GTCTGCCTGTCTATGCCAAAGCAGAGTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTGTCTGTGCTGCTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 90 bp GCTAGCCTTGCCTTCTCTGTGCTGGCAGATTTGCCCAAAGGAAGCTaGGGCTTGGGTAAGGGCTCCCTCCACTCCCATGGTAAGCGTGTT +
Preference number: 1 (lower is better)
Translates to: ASLAFSVLADLPKGS*GLGKGSLHSHGKRV
Trigger: AACACGCTTACCATGGGAGTGGAGGGAGCCCTTACCCAAGCCCCAGCTTCCTTTGGGCAAATCTGCCAGCACAGAGAAGGCAAGGCTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 90 bp TTGCCTTCTCTGTGCTGGCAGATTTGCCCAAAGGAAGCTGGGGCTTaGGTAAGGGCTCCCTCCACTCCCATGGTAAGCGTGTTAGTAGTG +
Preference number: 1 (lower is better)
Translates to: LPSLCWQICPKEAGA*VRAPSTPMVSVLVV
Trigger: CACTACTAACACGCTTACCATGGGAGTGGAGGGAGCCCTTACCCAAGCCCCAGCTTCCTTTGGGCAAATCTGCCAGCACAGAGAAGGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR TCA 90 bp ACAGGCAGACGATGTGACTTCAGAAACCCATCTGGAGGTGCCCCCTaGTGGCCATATTCCTCTGAAGTCAGCTCCATGAGAGAAGCCCTC +
Preference number: 1 (lower is better)
Translates to: TGRRCDFRNPSGGAP*WPYSSEVSSMREAL
Trigger: GAGGGCTTCTCTCATGGAGCTGACTTCAGAGGAATATGGCCATCAGGGGGCACCTCCAGATGGGTTTCTGAAGTCACATCGTCTGCCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 90 bp CCTGGCCATGCCCCTACTTGGGAAGCACACTCAGAGACTCTGCTTTaGCATAGACAGGCAGACGATGTGACTTCAGAAACCCATCTGGAG +
Preference number: 1 (lower is better)
Translates to: PGHAPTWEAHSETLL*HRQADDVTSETHLE
Trigger: CTCCAGATGGGTTTCTGAAGTCACATCGTCTGCCTGTCTATGCCAAAGCAGAGTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 90 bp CAGAAGCAGGGTGGTGGCCAGTTCCACTTGATGCCTCTACAAACCTaGACCCTTTTCAATGGCTTCTCCAGCAGCAGGAACAGGGTAGAC +
Preference number: 1 (lower is better)
Translates to: QKQGGGQFHLMPLQT*TLFNGFSSSRNRVD
Trigger: GTCTACCCTGTTCCTGCTGCTGGAGAAGCCATTGAAAAGGGTCCAGGTTTGTAGAGGCATCAAGTGGAACTGGCCACCACCCTGCTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR TCA 90 bp AGCCAATGGAGCCTGGGTAAGTGGCCTCTGACTTTCCCAACTCACTaGGGTACCTCTAGGCTACAGATGAGGTGGACTCATCTCAGAAGG +
Preference number: 1 (lower is better)
Translates to: SQWSLGKWPLTFPTH*GTSRLQMRWTHLRR
Trigger: CCTTCTGAGATGAGTCCACCTCATCTGTAGCCTAGAGGTACCTCAGTGAGTTGGGAAAGTCAGAGGCCACTTACCCAGGCTCCATTGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTaGCCAGTTCCACTTGATGCCTCTACAAACCTGGACCCTTTTCAA +
Preference number: 1 (lower is better)
Translates to: GDHIGRVRVTAEAGW*PVPLDASTNLDPFQ
Trigger: TTGAAAAGGGTCCAGGTTTGTAGAGGCATCAAGTGGAACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR CCA 90 bp CATGAGAGAAGCCCTCGTCCCAGAAAACAAGCAGCCTGGGGTTTCTaGGGTGGGCAGGAAACAAAGTCCTTCAGGAAACTGAGTGCAAAT +
Preference number: 1 (lower is better)
Translates to: HERSPRPRKQAAWGF*GGQETKSFRKLSAN
Trigger: ATTTGCACTCAGTTTCCTGAAGGACTTTGTTTCCTGCCCACCCCAGAAACCCCAGGCTGCTTGTTTTCTGGGACGAGGGCTTCTCTCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 90 bp GGCTCCCTCCACTCCCATGGTAAGCGTGTTAGTAGTGATGGGCATTaGACATCTCACAAAGATCTAACACACCCAGAAGCCAAGAGGACA +
Preference number: 1 (lower is better)
Translates to: GSLHSHGKRVSSDGH*TSHKDLTHPEAKRT
Trigger: TGTCCTCTTGGCTTCTGGGTGTGTTAGATCTTTGTGAGATGTCCAATGCCCATCACTACTAACACGCTTACCATGGGAGTGGAGGGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGCACCCCAGTGTCCTATaGGGCAGCCCCAGCGAGGCC +
Preference number: 2 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLAHPSVL*GSPSEA
Trigger: GGCCTCGCTGGGGCTGCCCCATAGGACACTGGGGTG...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGCCCACTCCCAGTGCATaGAGGTGCCCCTCTGGAGGG +
Preference number: 2 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLAPTPSA*RCPSGG
Trigger: CCCTCCAGAGGGGCACCTGCATGCACTGGGAGTGGG...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTGAGCTGGAGCCTCAGTaGGACCAGGGAAGCCAGACC +
Preference number: 2 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRELEPQ*DQGSQT
Trigger: GGTCTGGCTTCCCTGGTCCCACTGAGGCTCCAGCTC...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGCAGGCTGACGGGGCCTaGACCAGGAGCAGCACAGAC +
Preference number: 2 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWQADGA*TRSSTD
Trigger: GTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTG...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGATGCAGGTGCCCCTCTaGAGGGCACAGAGTGGAGGG +
Preference number: 2 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLAMQVPL*RAQSGG
Trigger: CCCTCCACTCTGTGCCCTCCAGAGGGGCACCTGCAT...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGAGGGAAGCCAGACCCTaGTGGGAGTGGCTCTCTGTG +
Preference number: 2 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLAREARP*WEWLSV
Trigger: CACAGAGAGCCACTCCCAGCAGGGTCTGGCTTCCCT...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCCCCACTCCCAGTGCATaGAGGTGCCCCTCTGGAGGG +
Preference number: 2 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSPTPSA*RCPSGG
Trigger: CCCTCCAGAGGGGCACCTGCATGCACTGGGAGTGGG...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCGCTGCCCACTCCCAGTaGATGCAGGTGCCCCTCTGG +
Preference number: 2 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSAAHSQ*MQVPLW
Trigger: CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGC...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGGCAAGGGAGGAGAGCTaGAGCCTCAGTGGGACCAGG +
Preference number: 2 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWAREES*SLSGTR
Trigger: CCTGGTCCCACTGAGGCTCCAGCTCTCCTCCCTTGC...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGGAGGCACAAAGCGCATaGCAGAGGGCTCTTGCCCTG +
Preference number: 2 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLAEAQSA*QRALAL
Trigger: CAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTGAGGCACAAAGCGCATaGCAGAGGGCTCTTGCCCTG +
Preference number: 2 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWREAQSA*QRALAL
Trigger: CAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGCTCCCAGCCAGAGGGTaGGATGCAGGACTCTACCAG +
Preference number: 2 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWLPARG*DAGLYQ
Trigger: CTGGTAGAGTCCTGCATCTCACCCTCTGGCTGGGAG...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTAGCCAGAGGGTGAGATaGAGGACTCTACCAGCTCCC +
Preference number: 2 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRSQRVR*RTLPAP
Trigger: GGGAGCTGGTAGAGTCCTGCATCTCACCCTCTGGCT...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTAAGGAAGCTGGGGCTTaGGTAAGGGCTCCCTCCACT +
Preference number: 2 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRKEAGA*VRAPST
Trigger: AGTGGAGGGAGCCCTTACCCAAGCCCCAGCTTCCTT...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGAAGGAAGCTGGGGCTTaGGTAAGGGCTCCCTCCACT +
Preference number: 2 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLAKEAGA*VRAPST
Trigger: AGTGGAGGGAGCCCTTACCCAAGCCCCAGCTTCCTT...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCCAGGCTGACGGGGCCTaGACCAGGAGCAGCACAGAC +
Preference number: 2 (lower is better)
Translates to: EAQSAWQRALALMARLAAQADGA*TRSSTD
Trigger: GTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTG...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCACCTACCCTCCTGCCTaGGCTGGTCATTCCAGCTGG +
Preference number: 2 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSTYPPA*AGHSSW
Trigger: CCAGCTGGAATGACCAGCTCAGGCAGGAGGGTAGGT...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCCTCCCAGCCAGAGGGTaGGATGCAGGACTCTACCAG +
Preference number: 2 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSLPARG*DAGLYQ
Trigger: CTGGTAGAGTCCTGCATCTCACCCTCTGGCTGGGAG...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCGGATGGGTGTGGGTGTaGGTGTGGGGCAGCAAATGG +
Preference number: 2 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSGWVWV*VWGSKW
Trigger: CCATTTGCTGCCCCACACCCACACCCACACCCATCC...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCCAGGCTCCCACCACCTaGCCATGCCCCTACTTGGGA +
Preference number: 2 (lower is better)
Translates to: EAQSAWQRALALMARLAAQAPTT*PCPYLG
Trigger: TCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTG...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGCTGGCTGCCTCCATTTaGGGAGGTAATACTGGTCCG +
Preference number: 2 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWLAASI*GGNTGP
Trigger: CGGACCAGTATTACCTCCTCAAATGGAGGCAGCCAG...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp GAGGGTGAGATGCAGGACTCTACCAGCTCCCTGGAGGTGGGCCAGTCAGGTCGGACCTACCCTCCTGCCTaGGCTGGTCATTCCAGCTGG +
Preference number: 2 (lower is better)
Translates to: EGEMQDSTSSLEVGQSGRTYPPA*AGHSSW
Trigger: CCAGCTGGAATGACCAGCTCAGGCAGGAGGGTAGGT...CCGACCTGACTGGCCCACCTCCAGGGAGCTGGTAGAGTCCTGCATCTCACCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGCTGTGCTGGCAGATTTaGCCAAAGGAAGCTGGGGCT +
Preference number: 2 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWLCWQI*PKEAGA
Trigger: AGCCCCAGCTTCCTTTGGGCAAATCTGCCAGCACAG...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGGCCTTGTCTAAAGTCTaGGTGGACAGAGGGGACAGA +
Preference number: 2 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLAALSKV*VDRGDR
Trigger: TCTGTCCCCTCTGTCCACCCAGACTTTAGACAAGGC...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCCTGGAAGAGAAGGCATaGGGTGGGCCAGGTGATGGA +
Preference number: 2 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSLEEKA*GGPGDG
Trigger: TCCATCACCTGGCCCACCCCATGCCTTCTCTTCCAG...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCGGGCAAGGGGTGGCCTaGAAGAGAAGGCATGGGGTG +
Preference number: 2 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLGQGVA*KRRHGV
Trigger: CACCCCATGCCTTCTCTTCCAGGCCACCCCTTGCCC...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCCCCTCCTGCCTGAGCTaGTCATTCCAGCTGGACCAT +
Preference number: 2 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSPSCLS*SFQLDH
Trigger: ATGGTCCAGCTGGAATGACCAGCTCAGGCAGGAGGG...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGCTGGGGTTTCTGGGGTaGGCAGGAAACAAAGTCCTT +
Preference number: 2 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLALGFLG*AGNKVL
Trigger: AAGGACTTTGTTTCCTGCCCACCCCAGAAACCCCAG...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGAGAAAACAAGCAGCCTaGGGTTTCTGGGGTGGGCAG +
Preference number: 2 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWRKQAA*GFWGGQ
Trigger: CTGCCCACCCCAGAAACCCCAGGCTGCTTGTTTTCT...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp CCAGCCAAGGTGGGGGAGTTTTGGAGGCACAAAGCGCATGGCAGAGGGCTCTTGCAGGCTGACGGGGCCTaGACCAGGAGCAGCACAGAC +
Preference number: 2 (lower is better)
Translates to: PAKVGEFWRHKAHGRGLLQADGA*TRSSTD
Trigger: GTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTG...CAAGAGCCCTCTGCCATGCGCTTTGTGCCTCCAAAACTCCCCCACCTTGGCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCATGCAGGTGCCCCTCTaGAGGGCACAGAGTGGAGGG +
Preference number: 2 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLMQVPL*RAQSGG
Trigger: CCCTCCACTCTGTGCCCTCCAGAGGGGCACCTGCAT...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR TCA 90 bp CCACTGGGCTCCAAGGGCCCAGTAGAAGGTAGTTCCTGGGGACACTTCCTCAAGAGAGGGCTCTTGCCCTaGTGGCTAGGCTGGCTGCCC +
Preference number: 2 (lower is better)
Translates to: PLGSKGPVEGSSWGHFLKRGLLP*WLGWLP
Trigger: GGGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCT...CTTGAGGAAGTGTCCCCAGGAACTACCTTCTACTGGGCCCTTGGAGCCCAGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCCTGTGTTCTGGGTCCTaGCTGCCTCCATTTGAGGAG +
Preference number: 2 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSLCSGS*LPPFEE
Trigger: CTCCTCAAATGGAGGCAGCCAGGACCCAGAACACAG...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCAGACCCTGCTGGGAGTaGCTCTCTGTGTTCTGGGTC +
Preference number: 2 (lower is better)
Translates to: EAQSAWQRALALMARLAARPCWE*LSVFWV
Trigger: GACCCAGAACACAGAGAGCCACTCCCAGCAGGGTCT...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GAGGGTGAGATGCAGGACTCTACCAGCTCCCTGGAGGTGGGCCAGTCAGGTCGGAGACCCTGCTGGGAGTaGCTCTCTGTGTTCTGGGTC +
Preference number: 2 (lower is better)
Translates to: EGEMQDSTSSLEVGQSGRRPCWE*LSVFWV
Trigger: GACCCAGAACACAGAGAGCCACTCCCAGCAGGGTCT...CCGACCTGACTGGCCCACCTCCAGGGAGCTGGTAGAGTCCTGCATCTCACCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp ACAGGCTCCCACCACCTGGCCATGCCCCTACTTGGGAAGCACACTCAGAGACTCGAGCTGGAGCCTCAGTaGGACCAGGGAAGCCAGACC +
Preference number: 2 (lower is better)
Translates to: TGSHHLAMPLLGKHTQRLELEPQ*DQGSQT
Trigger: GGTCTGGCTTCCCTGGTCCCACTGAGGCTCCAGCTC...GAGTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCAAGGAAGCTGGGGCTTaGGTAAGGGCTCCCTCCACT +
Preference number: 2 (lower is better)
Translates to: EAQSAWQRALALMARLAAKEAGA*VRAPST
Trigger: AGTGGAGGGAGCCCTTACCCAAGCCCCAGCTTCCTT...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGTGGAGCCTGGGTAAGTaGCCTCTGACTTTCCCAACT +
Preference number: 2 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWWSLGK*PLTFPT
Trigger: AGTTGGGAAAGTCAGAGGCCACTTACCCAGGCTCCA...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTCACCCCAGTGTCCTATaGGGCAGCCCCAGCGAGGCC +
Preference number: 2 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVHPSVL*GSPSEA
Trigger: GGCCTCGCTGGGGCTGCCCCATAGGACACTGGGGTG...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR TCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCATGGGGTGGGCCAGGTaGTGGAAGGAATGGTTCAAA +
Preference number: 2 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSMGWAR*WKEWFK
Trigger: TTTGAACCATTCCTTCCATCACCTGGCCCACCCCAT...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCTCTGGAGGTGCCCCCTaGTGGCCATATTCCTCTGAA +
Preference number: 2 (lower is better)
Translates to: EAQSAWQRALALMARLAASGGAP*WPYSSE
Trigger: TTCAGAGGAATATGGCCATCAGGGGGCACCTCCAGA...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTGTGTGGGGCAGCAAATaGCATCCTACAATCAATGGT +
Preference number: 2 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRVWGSK*HPTING
Trigger: ACCATTGATTGTAGGATGCCATTTGCTGCCCCACAC...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCGTGTGGGTGTGGGTGTaGGGCAGCAAATGGCATCCT +
Preference number: 2 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLVWVWV*GSKWHP
Trigger: AGGATGCCATTTGCTGCCCCACACCCACACCCACAC...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp ACAGGCTCCCACCACCTGGCCATGCCCCTACTTGGGAAGCACACTCAGAGACTCGGATGGGTGTGGGTGTaGGTGTGGGGCAGCAAATGG +
Preference number: 2 (lower is better)
Translates to: TGSHHLAMPLLGKHTQRLGWVWV*VWGSKW
Trigger: CCATTTGCTGCCCCACACCCACACCCACACCCATCC...GAGTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCTGTCTAAAGTCTGGGTaGACAGAGGGGACAGAGGGG +
Preference number: 2 (lower is better)
Translates to: EAQSAWQRALALMARLAACLKSG*TEGTEG
Trigger: CCCCTCTGTCCCCTCTGTCCACCCAGACTTTAGACA...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCCTGTGTTCTGGGTCCTaGCTGCCTCCATTTGAGGAG +
Preference number: 2 (lower is better)
Translates to: EAQSAWQRALALMARLAALCSGS*LPPFEE
Trigger: CTCCTCAAATGGAGGCAGCCAGGACCCAGAACACAG...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACAGAGCTGGAGCCTCAGTaGGACCAGGGAAGCCAGACC +
Preference number: 2 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTELEPQ*DQGSQT
Trigger: GGTCTGGCTTCCCTGGTCCCACTGAGGCTCCAGCTC...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACAGCAAGGGAGGAGAGCTaGAGCCTCAGTGGGACCAGG +
Preference number: 2 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTAREES*SLSGTR
Trigger: CCTGGTCCCACTGAGGCTCCAGCTCTCCTCCCTTGC...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTTTGCCTTCTCTGTGCTaGCAGATTTGCCCAAAGGAA +
Preference number: 2 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRLPSLC*QICPKE
Trigger: TTCCTTTGGGCAAATCTGCCAGCACAGAGAAGGCAA...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGGCGCTATTCCAGACCTaGAAGTATATAAGAGGAAGC +
Preference number: 2 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLAALFQT*KYIRGS
Trigger: GCTTCCTCTTATATACTTTCAGGTCTGGAATAGCGC...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCGCTGGACCATACTTTTaGATCCCAGGGCAAGGGAGG +
Preference number: 2 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLAGPYF*IPGQGR
Trigger: CCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR GCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCCTGTGCTGGCAGATTTaGCCAAAGGAAGCTGGGGCT +
Preference number: 2 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLLCWQI*PKEAGA
Trigger: AGCCCCAGCTTCCTTTGGGCAAATCTGCCAGCACAG...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR GCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCGCTGCCCACTCCCAGTaGATGCAGGTGCCCCTCTGG +
Preference number: 2 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVAAHSQ*MQVPLW
Trigger: CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGC...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GCTGGACCATACTTTTGCATCCCAGGGCAAGGGAGGAGAGCTGGAGCCTCAGTGGGATGGGTGTGGGTGTaGGTGTGGGGCAGCAAATGG +
Preference number: 2 (lower is better)
Translates to: AGPYFCIPGQGRRAGASVGWVWV*VWGSKW
Trigger: CCATTTGCTGCCCCACACCCACACCCACACCCATCC...CACTGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTGGGCAAGGGGTGGCCTaGAAGAGAAGGCATGGGGTG +
Preference number: 2 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVGQGVA*KRRHGV
Trigger: CACCCCATGCCTTCTCTTCCAGGCCACCCCTTGCCC...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACAGAGAGGGGCAAGGGGTaGCCTGGAAGAGAAGGCATG +
Preference number: 2 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTERGKG*PGREGM
Trigger: CATGCCTTCTCTTCCAGGCCACCCCTTGCCCCTCTC...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp ACAGGCTCCCACCACCTGGCCATGCCCCTACTTGGGAAGCACACTCAGAGACTCTTGCCCAAAGGAAGCTaGGGCTTGGGTAAGGGCTCC +
Preference number: 2 (lower is better)
Translates to: TGSHHLAMPLLGKHTQRLLPKGS*GLGKGS
Trigger: GGAGCCCTTACCCAAGCCCCAGCTTCCTTTGGGCAA...GAGTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTCAGGCTCCCACCACCTaGCCATGCCCCTACTTGGGA +
Preference number: 2 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVQAPTT*PCPYLG
Trigger: TCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTG...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR TCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTTTTGGGATGACTTTCTaGATCCCTGACACTATTGAC +
Preference number: 2 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRFGMTF*IPDTID
Trigger: GTCAATAGTGTCAGGGATTCAGAAAGTCATCCCAAA...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp ACTGGAGCAACAGTGAGGGCAAGCGACCTTAGCAGAGAACCAGAGAGGCTCCCAACCTACCCTCCTGCCTaGGCTGGTCATTCCAGCTGG +
Preference number: 2 (lower is better)
Translates to: TGATVRASDLSREPERLPTYPPA*AGHSSW
Trigger: CCAGCTGGAATGACCAGCTCAGGCAGGAGGGTAGGT...TGGGAGCCTCTCTGGTTCTCTGCTAAGGTCGCTTGCCCTCACTGTTGCTCCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGAGAGGGCTCTTGCCCTaGTGGCTAGGCTGGCTGCCC +
Preference number: 2 (lower is better)
Translates to: KLKDRAITPACRVHRSSQRGLLP*WLGWLP
Trigger: GGGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCT...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR TCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCGTGGCCAGTTCCACTTaGTGCCTCTACAAACCTGGA +
Preference number: 2 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLVASST*CLYKPG
Trigger: TCCAGGTTTGTAGAGGCATCAAGTGGAACTGGCCAC...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR GCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGCTTCAGGAAACTGAGTaGAAATGTAGTCAGGGCTTG +
Preference number: 2 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWLQETE*KCSQGL
Trigger: CAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAG...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCACACTATTGACATCTTaGGTTGGGGCGCTATTCCAG +
Preference number: 2 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSTLLTS*VGALFQ
Trigger: CTGGAATAGCGCCCCAACCCAAGATGTCAATAGTGT...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp CCAGCCAAGGTGGGGGAGTTTTGGAGGCACAAAGCGCATGGCAGAGGGCTCTTGTGTCTAAAGTCTGGGTaGACAGAGGGGACAGAGGGG +
Preference number: 2 (lower is better)
Translates to: PAKVGEFWRHKAHGRGLLCLKSG*TEGTEG
Trigger: CCCCTCTGTCCCCTCTGTCCACCCAGACTTTAGACA...CAAGAGCCCTCTGCCATGCGCTTTGTGCCTCCAAAACTCCCCCACCTTGGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCGGGCAAGGGGTGGCCTaGAAGAGAAGGCATGGGGTG +
Preference number: 2 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVGQGVA*KRRHGV
Trigger: CACCCCATGCCTTCTCTTCCAGGCCACCCCTTGCCC...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACAGAAGCCAGACCCTGCTaGGAGTGGCTCTCTGTGTTC +
Preference number: 2 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTEARPC*EWLSVF
Trigger: GAACACAGAGAGCCACTCCCAGCAGGGTCTGGCTTC...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACATTGCCCAAAGGAAGCTaGGGCTTGGGTAAGGGCTCC +
Preference number: 2 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTLPKGS*GLGKGS
Trigger: GGAGCCCTTACCCAAGCCCCAGCTTCCTTTGGGCAA...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCTGGAGCCTGGGTAAGTaGCCTCTGACTTTCCCAACT +
Preference number: 2 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLWSLGK*PLTFPT
Trigger: AGTTGGGAAAGTCAGAGGCCACTTACCCAGGCTCCA...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCCAGGCTCCCACCACCTaGCCATGCCCCTACTTGGGA +
Preference number: 2 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVQAPTT*PCPYLG
Trigger: TCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTG...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp TGGCTGCCTCCATTTGAGGAGGTAATACTGGTCCGGGAGCCCAAGGAGAGGGGCATGGGGTGGGCCAGGTaGTGGAAGGAATGGTTCAAA +
Preference number: 2 (lower is better)
Translates to: WLPPFEEVILVREPKERGMGWAR*WKEWFK
Trigger: TTTGAACCATTCCTTCCATCACCTGGCCCACCCCAT...GCCCCTCTCCTTGGGCTCCCGGACCAGTATTACCTCCTCAAATGGAGGCAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACACTGGCTGCCTCCATTTaGGGAGGTAATACTGGTCCG +
Preference number: 2 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTLAASI*GGNTGP
Trigger: CGGACCAGTATTACCTCCTCAAATGGAGGCAGCCAG...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCACCTACCCTCCTGCCTaGGCTGGTCATTCCAGCTGG +
Preference number: 2 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVTYPPA*AGHSSW
Trigger: CCAGCTGGAATGACCAGCTCAGGCAGGAGGGTAGGT...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp GAGGGTGAGATGCAGGACTCTACCAGCTCCCTGGAGGTGGGCCAGTCAGGTCGGATGGCCATATTCCTCTaGAGTCAGCTCCATGAGAGA +
Preference number: 2 (lower is better)
Translates to: EGEMQDSTSSLEVGQSGRMAIFL*SQLHER
Trigger: TCTCTCATGGAGCTGACTTCAGAGGAATATGGCCAT...CCGACCTGACTGGCCCACCTCCAGGGAGCTGGTAGAGTCCTGCATCTCACCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACAGCTGGACCATACTTTTaGATCCCAGGGCAAGGGAGG +
Preference number: 2 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTAGPYF*IPGQGR
Trigger: CCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTTTTCTCTCCAAGTTTTaGGATGACTTTCTGAATCCC +
Preference number: 2 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRFLSKF*DDFLNP
Trigger: GGGATTCAGAAAGTCATCCCAAAACTTGGAGAGAAA...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTTTGCCCAAAGGAAGCTaGGGCTTGGGTAAGGGCTCC +
Preference number: 2 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVLPKGS*GLGKGS
Trigger: GGAGCCCTTACCCAAGCCCCAGCTTCCTTTGGGCAA...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGCAGGCTCCCACCACCTaGCCATGCCCCTACTTGGGA +
Preference number: 2 (lower is better)
Translates to: KLKDRAITPACRVHRSSQQAPTT*PCPYLG
Trigger: TCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTG...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCGAGGCACAAAGCGCATaGCAGAGGGCTCTTGCCCTG +
Preference number: 2 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVEAQSA*QRALAL
Trigger: CAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp GCTGGACCATACTTTTGCATCCCAGGGCAAGGGAGGAGAGCTGGAGCCTCAGTGATGGGGTGGGCCAGGTaGTGGAAGGAATGGTTCAAA +
Preference number: 2 (lower is better)
Translates to: AGPYFCIPGQGRRAGASVMGWAR*WKEWFK
Trigger: TTTGAACCATTCCTTCCATCACCTGGCCCACCCCAT...CACTGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTTCTGGAGGTGCCCCCTaGTGGCCATATTCCTCTGAA +
Preference number: 2 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVSGGAP*WPYSSE
Trigger: TTCAGAGGAATATGGCCATCAGGGGGCACCTCCAGA...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR GCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCAATCAATGGTCAGGCTaGCAGGAGTGGAGAGCCGGC +
Preference number: 2 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVNQWSG*QEWRAG
Trigger: GCCGGCTCTCCACTCCTGGCAGCCTGACCATTGATT...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTTGTCTAAAGTCTGGGTaGACAGAGGGGACAGAGGGG +
Preference number: 2 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVCLKSG*TEGTEG
Trigger: CCCCTCTGTCCCCTCTGTCCACCCAGACTTTAGACA...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGAGAGGGGCAAGGGGTaGCCTGGAAGAGAAGGCATG +
Preference number: 2 (lower is better)
Translates to: KLKDRAITPACRVHRSSQERGKG*PGREGM
Trigger: CATGCCTTCTCTTCCAGGCCACCCCTTGCCCCTCTC...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTCTGTGTTCTGGGTCCTaGCTGCCTCCATTTGAGGAG +
Preference number: 2 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVLCSGS*LPPFEE
Trigger: CTCCTCAAATGGAGGCAGCCAGGACCCAGAACACAG...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCTTGCCTTCTCTGTGCTaGCAGATTTGCCCAAAGGAA +
Preference number: 2 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLLPSLC*QICPKE
Trigger: TTCCTTTGGGCAAATCTGCCAGCACAGAGAAGGCAA...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp CCACTGGGCTCCAAGGGCCCAGTAGAAGGTAGTTCCTGGGGACACTTCCTCAAGAATGTAGTCAGGGCTTaGAGCCAATGGAGCCTGGGT +
Preference number: 2 (lower is better)
Translates to: PLGSKGPVEGSSWGHFLKNVVRA*SQWSLG
Trigger: ACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATT...CTTGAGGAAGTGTCCCCAGGAACTACCTTCTACTGGGCCCTTGGAGCCCAGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTAGAAAACAAGCAGCCTaGGGTTTCTGGGGTGGGCAG +
Preference number: 2 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVRKQAA*GFWGGQ
Trigger: CTGCCCACCCCAGAAACCCCAGGCTGCTTGTTTTCT...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR CAA 90 bp GCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTCCACTaGATGCCTCTACAAACCTGGACCCTTTTCAATGGCTTCTCCAGC +
Preference number: 2 (lower is better)
Translates to: AGLGSQQKQGGGQFH*MPLQTWTLFNGFSS
Trigger: GCTGGAGAAGCCATTGAAAAGGGTCCAGGTTTGTAGAGGCATCAAGTGGAACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR TCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCGCGCTATTCCAGACCTaGAAGTATATAAGAGGAAGC +
Preference number: 2 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLALFQT*KYIRGS
Trigger: GCTTCCTCTTATATACTTTCAGGTCTGGAATAGCGC...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR GCA 90 bp CCACTGGGCTCCAAGGGCCCAGTAGAAGGTAGTTCCTGGGGACACTTCCTCAAGCTGGAACCAGCAGGCTaGTCAAGTGTCTACTTCCAA +
Preference number: 2 (lower is better)
Translates to: PLGSKGPVEGSSWGHFLKLEPAG*SSVYFQ
Trigger: TTGGAAGTAGACACTTGAGCAGCCTGCTGGTTCCAG...CTTGAGGAAGTGTCCCCAGGAACTACCTTCTACTGGGCCCTTGGAGCCCAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGCTGGAAGAGAAGGCATaGGGTGGGCCAGGTGATGGA +
Preference number: 2 (lower is better)
Translates to: KLKDRAITPACRVHRSSQLEEKA*GGPGDG
Trigger: TCCATCACCTGGCCCACCCCATGCCTTCTCTTCCAG...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGGAGAGGGGCAAGGGGTaGCCTGGAAGAGAAGGCATG +
Preference number: 2 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKERGKG*PGREGM
Trigger: CATGCCTTCTCTTCCAGGCCACCCCTTGCCCCTCTC...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCCTGTGTTCTGGGTCCTaGCTGCCTCCATTTGAGGAG +
Preference number: 2 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVLCSGS*LPPFEE
Trigger: CTCCTCAAATGGAGGCAGCCAGGACCCAGAACACAG...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGTTGCCCAAAGGAAGCTaGGGCTTGGGTAAGGGCTCC +
Preference number: 2 (lower is better)
Translates to: KLKDRAITPACRVHRSSQLPKGS*GLGKGS
Trigger: GGAGCCCTTACCCAAGCCCCAGCTTCCTTTGGGCAA...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp ACTGGAGCAACAGTGAGGGCAAGCGACCTTAGCAGAGAACCAGAGAGGCTCCCAAATGTAGTCAGGGCTTaGAGCCAATGGAGCCTGGGT +
Preference number: 2 (lower is better)
Translates to: TGATVRASDLSREPERLPNVVRA*SQWSLG
Trigger: ACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATT...TGGGAGCCTCTCTGGTTCTCTGCTAAGGTCGCTTGCCCTCACTGTTGCTCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CAA 90 bp GCCTGTTTACATTGTCACCTAGATCAGAGGAGGGCTGTGAGTTCCTaGGGTGGAGACCCCTCAGTAGCCTTTGGCCCTAAAGCCTGGGAT +
Preference number: 2 (lower is better)
Translates to: ACLHCHLDQRRAVSS*GGDPSVAFGPKAWD
Trigger: ATCCCAGGCTTTAGGGCCAAAGGCTACTGAGGGGTCTCCACCCAAGGAACTCACAGCCCTCCTCTGATCTAGGTGACAATGTAAACAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR TCA 90 bp ACAGGCTCCCACCACCTGGCCATGCCCCTACTTGGGAAGCACACTCAGAGACTCGCGCTATTCCAGACCTaGAAGTATATAAGAGGAAGC +
Preference number: 2 (lower is better)
Translates to: TGSHHLAMPLLGKHTQRLALFQT*KYIRGS
Trigger: GCTTCCTCTTATATACTTTCAGGTCTGGAATAGCGC...GAGTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GCTGGACCATACTTTTGCATCCCAGGGCAAGGGAGGAGAGCTGGAGCCTCAGTGGTGTGGGGCAGCAAATaGCATCCTACAATCAATGGT +
Preference number: 2 (lower is better)
Translates to: AGPYFCIPGQGRRAGASVVWGSK*HPTING
Trigger: ACCATTGATTGTAGGATGCCATTTGCTGCCCCACAC...CACTGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGGCAAGGGGTGGCCTaGAAGAGAAGGCATGGGGTG +
Preference number: 2 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSGQGVA*KRRHGV
Trigger: CACCCCATGCCTTCTCTTCCAGGCCACCCCTTGCCC...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp CGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGAGAGGGGCAAGGGGTaGCCTGGAAGAGAAGGCATG +
Preference number: 2 (lower is better)
Translates to: RNDLSGKKREVRIRAFSQERGKG*PGREGM
Trigger: CATGCCTTCTCTTCCAGGCCACCCCTTGCCCCTCTC...CTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGAGCTGGAGCCTCAGTaGGACCAGGGAAGCCAGACC +
Preference number: 2 (lower is better)
Translates to: NDLSGKKREVRIRAFSQAELEPQ*DQGSQT
Trigger: GGTCTGGCTTCCCTGGTCCCACTGAGGCTCCAGCTC...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACATTGCCTTCTCTGTGCTaGCAGATTTGCCCAAAGGAA +
Preference number: 2 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTLPSLC*QICPKE
Trigger: TTCCTTTGGGCAAATCTGCCAGCACAGAGAAGGCAA...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGAGGCCTCAGGCATTTaGGTTTGGTTCAGCTGGGGT +
Preference number: 2 (lower is better)
Translates to: KLKDRAITPACRVHRSSQEASGI*VWFSWG
Trigger: ACCCCAGCTGAACCAAACCCAAATGCCTGAGGCCTC...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGTCCCCTGTCTCTCCATaGTACCACCCCAGTGTCCTA +
Preference number: 2 (lower is better)
Translates to: KLKDRAITPACRVHRSSQSPVSP*YHPSVL
Trigger: TAGGACACTGGGGTGGTACCATGGAGAGACAGGGGA...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR TCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACAGCGCTATTCCAGACCTaGAAGTATATAAGAGGAAGC +
Preference number: 2 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTALFQT*KYIRGS
Trigger: GCTTCCTCTTATATACTTTCAGGTCTGGAATAGCGC...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTAGGGAAGCCAGACCCTaGTGGGAGTGGCTCTCTGTG +
Preference number: 2 (lower is better)
Translates to: NDLSGKKREVRIRAFSQAREARP*WEWLSV
Trigger: CACAGAGAGCCACTCCCAGCAGGGTCTGGCTTCCCT...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTAGGCCCAGTTCCACCTTaGTCTCAGCCCCCTTCTCCA +
Preference number: 2 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLGPVPP*SQPPSP
Trigger: TGGAGAAGGGGGCTGAGAGCAAGGTGGAACTGGGCC...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTGTGTGGGGCAGCAAATaGCATCCTACAATCAATGGT +
Preference number: 2 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVVWGSK*HPTING
Trigger: ACCATTGATTGTAGGATGCCATTTGCTGCCCCACAC...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACCTGGAAGAGAAGGCATaGGGTGGGCCAGGTGATGGA +
Preference number: 2 (lower is better)
Translates to: DLSGKKREVRIRAFSQADLEEKA*GGPGDG
Trigger: TCCATCACCTGGCCCACCCCATGCCTTCTCTTCCAG...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp CGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGAAGCCAGACCCTGCTaGGAGTGGCTCTCTGTGTTC +
Preference number: 2 (lower is better)
Translates to: RNDLSGKKREVRIRAFSQEARPC*EWLSVF
Trigger: GAACACAGAGAGCCACTCCCAGCAGGGTCTGGCTTC...CTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTAGAGGCACAAAGCGCATaGCAGAGGGCTCTTGCCCTG +
Preference number: 2 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLEAQSA*QRALAL
Trigger: CAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR TCA 90 bp CGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGCTGGCTGCCTCCATTTaGGGAGGTAATACTGGTCCG +
Preference number: 2 (lower is better)
Translates to: RNDLSGKKREVRIRAFSQLAASI*GGNTGP
Trigger: CGGACCAGTATTACCTCCTCAAATGGAGGCAGCCAG...CTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp AAGTCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGCTGCCTCCATTTaGGGAGGTAATACTGGTCCG +
Preference number: 2 (lower is better)
Translates to: KSFRKLSANVVRAWSQWSLAASI*GGNTGP
Trigger: CGGACCAGTATTACCTCCTCAAATGGAGGCAGCCAG...GCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTAATCAATGGTCAGGCTaGCAGGAGTGGAGAGCCGGC +
Preference number: 2 (lower is better)
Translates to: NDLSGKKREVRIRAFSQANQWSG*QEWRAG
Trigger: GCCGGCTCTCCACTCCTGGCAGCCTGACCATTGATT...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp CGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGGACCATACTTTTaGATCCCAGGGCAAGGGAGG +
Preference number: 2 (lower is better)
Translates to: RNDLSGKKREVRIRAFSQAGPYF*IPGQGR
Trigger: CCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC...CTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACGCTGGACCATACTTTTaGATCCCAGGGCAAGGGAGG +
Preference number: 2 (lower is better)
Translates to: DLSGKKREVRIRAFSQADAGPYF*IPGQGR
Trigger: CCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTACCCTCCTGCCTGAGCTaGTCATTCCAGCTGGACCAT +
Preference number: 2 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLPSCLS*SFQLDH
Trigger: ATGGTCCAGCTGGAATGACCAGCTCAGGCAGGAGGG...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTCCCTCCTGCCTGAGCTaGTCATTCCAGCTGGACCAT +
Preference number: 2 (lower is better)
Translates to: NDLSGKKREVRIRAFSQAPSCLS*SFQLDH
Trigger: ATGGTCCAGCTGGAATGACCAGCTCAGGCAGGAGGG...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAAAGGAAGCTGGGGCTTaGGTAAGGGCTCCCTCCACT +
Preference number: 2 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSKEAGA*VRAPST
Trigger: AGTGGAGGGAGCCCTTACCCAAGCCCCAGCTTCCTT...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGCTGGACCCTTTTCAATaGCTTCTCCAGCAGCAGGAA +
Preference number: 2 (lower is better)
Translates to: KLKDRAITPACRVHRSSQLDPFQ*LLQQQE
Trigger: TTCCTGCTGCTGGAGAAGCCATTGAAAAGGGTCCAG...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR TCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTTCTGGAGGTGCCCCCTaGTGGCCATATTCCTCTGAA +
Preference number: 2 (lower is better)
Translates to: NDLSGKKREVRIRAFSQASGGAP*WPYSSE
Trigger: TTCAGAGGAATATGGCCATCAGGGGGCACCTCCAGA...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCATCTGGAGGTGCCCCCTaGTGGCCATATTCCTCTGAA +
Preference number: 2 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSSGGAP*WPYSSE
Trigger: TTCAGAGGAATATGGCCATCAGGGGGCACCTCCAGA...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTCTGTGCTGGCAGATTTaGCCAAAGGAAGCTGGGGCT +
Preference number: 2 (lower is better)
Translates to: NDLSGKKREVRIRAFSQALCWQI*PKEAGA
Trigger: AGCCCCAGCTTCCTTTGGGCAAATCTGCCAGCACAG...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCCTTCAGGAAACTGAGTaGAAATGTAGTCAGGGCTTG +
Preference number: 2 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVLQETE*KCSQGL
Trigger: CAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAG...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGACACTATTGACATCTTaGGTTGGGGCGCTATTCCAG +
Preference number: 2 (lower is better)
Translates to: KLKDRAITPACRVHRSSQTLLTS*VGALFQ
Trigger: CTGGAATAGCGCCCCAACCCAAGATGTCAATAGTGT...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACATTTCTCTCCAAGTTTTaGGATGACTTTCTGAATCCC +
Preference number: 2 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTFLSKF*DDFLNP
Trigger: GGGATTCAGAAAGTCATCCCAAAACTTGGAGAGAAA...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp CGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGAATGTAGTCAGGGCTTaGAGCCAATGGAGCCTGGGT +
Preference number: 2 (lower is better)
Translates to: RNDLSGKKREVRIRAFSQNVVRA*SQWSLG
Trigger: ACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATT...CTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTAAAGGTGGGGGAGTTTTaGAGGCACAAAGCGCATGGC +
Preference number: 2 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLKVGEF*RHKAHG
Trigger: GCCATGCGCTTTGTGCCTCCAAAACTCCCCCACCTT...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR GCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTTCAGAAGGTGAAGGGTaGCCTAGAGCTGCTAGCCTT +
Preference number: 2 (lower is better)
Translates to: NDLSGKKREVRIRAFSQASEGEG*PRAASL
Trigger: AAGGCTAGCAGCTCTAGGGCACCCTTCACCTTCTGA...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGACACTATTGACATCTTaGGTTGGGGCGCTATTCCAG +
Preference number: 2 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKTLLTS*VGALFQ
Trigger: CTGGAATAGCGCCCCAACCCAAGATGTCAATAGTGT...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGCCTTGTCTAAAGTCTaGGTGGACAGAGGGGACAGA +
Preference number: 2 (lower is better)
Translates to: NDLSGKKREVRIRAFSQAALSKV*VDRGDR
Trigger: TCTGTCCCCTCTGTCCACCCAGACTTTAGACAAGGC...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTACTGGGGTTTCTGGGGTaGGCAGGAAACAAAGTCCTT +
Preference number: 2 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLLGFLG*AGNKVL
Trigger: AAGGACTTTGTTTCCTGCCCACCCCAGAAACCCCAG...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGATGCCTCTACAAACCTaGACCCTTTTCAATGGCTTC +
Preference number: 2 (lower is better)
Translates to: KLKDRAITPACRVHRSSQMPLQT*TLFNGF
Trigger: GAAGCCATTGAAAAGGGTCCAGGTTTGTAGAGGCAT...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR GCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTAGGGAAGCCAGACCCTaGTGGGAGTGGCTCTCTGTG +
Preference number: 2 (lower is better)
Translates to: SSYIYFLSRASTVARETCREARP*WEWLSV
Trigger: CACAGAGAGCCACTCCCAGCAGGGTCTGGCTTCCCT...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACGTGTGGGGCAGCAAATaGCATCCTACAATCAATGGT +
Preference number: 2 (lower is better)
Translates to: DLSGKKREVRIRAFSQADVWGSK*HPTING
Trigger: ACCATTGATTGTAGGATGCCATTTGCTGCCCCACAC...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACACACTATTGACATCTTaGGTTGGGGCGCTATTCCAG +
Preference number: 2 (lower is better)
Translates to: DLSGKKREVRIRAFSQADTLLTS*VGALFQ
Trigger: CTGGAATAGCGCCCCAACCCAAGATGTCAATAGTGT...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTATGGCCATATTCCTCTaGAGTCAGCTCCATGAGAGA +
Preference number: 2 (lower is better)
Translates to: NDLSGKKREVRIRAFSQAMAIFL*SQLHER
Trigger: TCTCTCATGGAGCTGACTTCAGAGGAATATGGCCAT...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR TCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTGAGGGGCAGAACTCATaGGTCAAGTGGTGGCCACTG +
Preference number: 2 (lower is better)
Translates to: SSYIYFLSRASTVARETCEGQNS*VKWWPL
Trigger: CAGTGGCCACCACTTGACTCATGAGTTCTGCCCCTC...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp AGACATTTTGAGCAGGGCCTGCCTTGTCTAAAGTCTGGGTGGACAGAGGGGACATTTCTCTCCAAGTTTTaGGATGACTTTCTGAATCCC +
Preference number: 2 (lower is better)
Translates to: RHFEQGLPCLKSGWTEGTFLSKF*DDFLNP
Trigger: GGGATTCAGAAAGTCATCCCAAAACTTGGAGAGAAA...TGTCCCCTCTGTCCACCCAGACTTTAGACAAGGCAGGCCCTGCTCAAAATGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTCTGGAAGAGAAGGCATaGGGTGGGCCAGGTGATGGA +
Preference number: 2 (lower is better)
Translates to: SSYIYFLSRASTVARETCLEEKA*GGPGDG
Trigger: TCCATCACCTGGCCCACCCCATGCCTTCTCTTCCAG...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTAGACCCTGCTGGGAGTaGCTCTCTGTGTTCTGGGTC +
Preference number: 2 (lower is better)
Translates to: SSYIYFLSRASTVARETCRPCWE*LSVFWV
Trigger: GACCCAGAACACAGAGAGCCACTCCCAGCAGGGTCT...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTGAAGCCAGACCCTGCTaGGAGTGGCTCTCTGTGTTC +
Preference number: 2 (lower is better)
Translates to: SSYIYFLSRASTVARETCEARPC*EWLSVF
Trigger: GAACACAGAGAGCCACTCCCAGCAGGGTCTGGCTTC...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CAA 90 bp TCAAATATAGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTaGCTAGGGAGACATGTGGAGCTCCACGAGTACACGGCGCAGGAG +
Preference number: 2 (lower is better)
Translates to: SNIVHTFIFSAELRL*LGRHVELHEYTAQE
Trigger: CTCCTGCGCCGTGTACTCGTGGAGCTCCACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACTATATTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR TCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTATGGGGTGGGCCAGGTaGTGGAAGGAATGGTTCAAA +
Preference number: 2 (lower is better)
Translates to: SSYIYFLSRASTVARETCMGWAR*WKEWFK
Trigger: TTTGAACCATTCCTTCCATCACCTGGCCCACCCCAT...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTTCAGAAGGTGAAGGGTaGCCTAGAGCTGCTAGCCTT +
Preference number: 2 (lower is better)
Translates to: SSYIYFLSRASTVARETCSEGEG*PRAASL
Trigger: AAGGCTAGCAGCTCTAGGGCACCCTTCACCTTCTGA...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTTGGAGCCTGGGTAAGTaGCCTCTGACTTTCCCAACT +
Preference number: 2 (lower is better)
Translates to: SSYIYFLSRASTVARETCWSLGK*PLTFPT
Trigger: AGTTGGGAAAGTCAGAGGCCACTTACCCAGGCTCCA...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTTTTCTCTCCAAGTTTTaGGATGACTTTCTGAATCCC +
Preference number: 2 (lower is better)
Translates to: NDLSGKKREVRIRAFSQAFLSKF*DDFLNP
Trigger: GGGATTCAGAAAGTCATCCCAAAACTTGGAGAGAAA...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR GCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTCTTCAGGAAACTGAGTaGAAATGTAGTCAGGGCTTG +
Preference number: 2 (lower is better)
Translates to: SSYIYFLSRASTVARETCLQETE*KCSQGL
Trigger: CAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAG...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGCGAGGCCTCAGGCATTaGGGTTTGGTTCAGCTGGGG +
Preference number: 3 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLARGLRH*GLVQLG
Trigger: CCCCAGCTGAACCAAACCCAAATGCCTGAGGCCTCG...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTCTGTGCTGGCAGATTaGCCCAAAGGAAGCTGGGGC +
Preference number: 3 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLASVLAD*PKGSWG
Trigger: GCCCCAGCTTCCTTTGGGCAAATCTGCCAGCACAGA...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR GCA 72 bp CTTGCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTaGATGCAGGTGCCCCTCTGGAGGGCACAGAGTGGA +
Preference number: 3 (lower is better)
Translates to: LALMARLAAHSQ*MQVPLWRAQSG
Trigger: TCCACTCTGTGCCCTCCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGCAAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp TGGAGCCTCAGTGGGACCAGGGAAGCCAGACCCTGCTaGGAGTGGCTCTCTGTGTTCTGGGTCCTGGCTGCC +
Preference number: 3 (lower is better)
Translates to: WSLSGTREARPC*EWLSVFWVLAA
Trigger: GGCAGCCAGGACCCAGAACACAGAGAGCCACTCCCAGCAGGGTCTGGCTTCCCTGGTCCCACTGAGGCTCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGACAGCCAGAGACATTTaGAGCAGGGCCTGCCTTGTC +
Preference number: 3 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLATARDI*SRACLV
Trigger: GACAAGGCAGGCCCTGCTCAAAATGTCTCTGGCTGT...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTAGCTGGACCATACTTTaGCATCCCAGGGCAAGGGAG +
Preference number: 3 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRSWTIL*HPRARE
Trigger: CTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGCT...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGTCTGTGCTGGCAGATTaGCCCAAAGGAAGCTGGGGC +
Preference number: 3 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWSVLAD*PKGSWG
Trigger: GCCCCAGCTTCCTTTGGGCAAATCTGCCAGCACAGA...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR GCA 72 bp AGCTGGAGCCTCAGTGGGACCAGGGAAGCCAGACCCTaGTGGGAGTGGCTCTCTGTGTTCTGGGTCCTGGCT +
Preference number: 3 (lower is better)
Translates to: SWSLSGTREARP*WEWLSVFWVLA
Trigger: AGCCAGGACCCAGAACACAGAGAGCCACTCCCAGCAGGGTCTGGCTTCCCTGGTCCCACTGAGGCTCCAGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTaGGTCCGTGGCCAGTCCTGGCGTGGCTTTGGATCA +
Preference number: 3 (lower is better)
Translates to: TCGAPRVHGAGG*VRGQSWRGFGS
Trigger: TGATCCAAAGCCACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR GCA 72 bp CAGAGAACCAGAGAGGCTCCCAGCCAGAGGGTGAGATaGAGGACTCTACCAGCTCCCTGGAGGTGGGCCAGT +
Preference number: 3 (lower is better)
Translates to: QRTREAPSQRVR*RTLPAPWRWAS
Trigger: ACTGGCCCACCTCCAGGGAGCTGGTAGAGTCCTGCATCTCACCCTCTGGCTGGGAGCCTCTCTGGTTCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp CTGGACCAGGAGCAGCACAGACAGGCTCCCACCACCTaGCCATGCCCCTACTTGGGAAGCACACTCAGAGAC +
Preference number: 3 (lower is better)
Translates to: LDQEQHRQAPTT*PCPYLGSTLRD
Trigger: GTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTGTCTGTGCTGCTCCTGGTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp AGCCAGAGGGTGAGATGCAGGACTCTACCAGCTCCCTaGAGGTGGGCCAGTCAGGTCGGAACGACCTCTCTG +
Preference number: 3 (lower is better)
Translates to: SQRVRCRTLPAP*RWASQVGTTSL
Trigger: CAGAGAGGTCGTTCCGACCTGACTGGCCCACCTCCAGGGAGCTGGTAGAGTCCTGCATCTCACCCTCTGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCTGGCCATGCCCCTACTaGGGAAGCACACTCAGAGAC +
Preference number: 3 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLWPCPY*GSTLRD
Trigger: GTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCA...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR GCA 72 bp AGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTaGTCACTCCACTTGCTCTGGCAAGGAGCAGAGCCC +
Preference number: 3 (lower is better)
Translates to: RVHRSSQGWVMG*SLHLLWQGAEP
Trigger: GGGCTCTGCTCCTTGCCAGAGCAAGTGGAGTGAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR CCA 72 bp ACCATACTTTTGCATCCCAGGGCAAGGGAGGAGAGCTaGAGCCTCAGTGGGACCAGGGAAGCCAGACCCTGC +
Preference number: 3 (lower is better)
Translates to: TILLHPRAREES*SLSGTREARPC
Trigger: GCAGGGTCTGGCTTCCCTGGTCCCACTGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp AGGGTGAGATGCAGGACTCTACCAGCTCCCTGGAGGTaGGCCAGTCAGGTCGGAACGACCTCTCTGGGAAGA +
Preference number: 3 (lower is better)
Translates to: RVRCRTLPAPWR*ASQVGTTSLGR
Trigger: TCTTCCCAGAGAGGTCGTTCCGACCTGACTGGCCCACCTCCAGGGAGCTGGTAGAGTCCTGCATCTCACCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp AGCCAAGGTGGGGGAGTTTTGGAGGCACAAAGCGCATaGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCT +
Preference number: 3 (lower is better)
Translates to: SQGGGVLEAQSA*QRALALMARLA
Trigger: AGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTCCAAAACTCCCCCACCTTGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp AGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTaGCCAGTCCTGGCGTGGCTTTGGATCAGTTTTATC +
Preference number: 3 (lower is better)
Translates to: SSTSTRRRRLGP*PVLAWLWISFI
Trigger: GATAAAACTGATCCAAAGCCACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp GAGGGTGAGATGCAGGACTCTACCAGCTCCCTGGAGGTGGGCCAGTCAGGTCGGGAATCCCTGACACTATaGACATCTTGGGTTGGGGCG +
Preference number: 3 (lower is better)
Translates to: EGEMQDSTSSLEVGQSGRESLTL*TSWVGA
Trigger: CGCCCCAACCCAAGATGTCAATAGTGTCAGGGATTC...CCGACCTGACTGGCCCACCTCCAGGGAGCTGGTAGAGTCCTGCATCTCACCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp CCAGCCAAGGTGGGGGAGTTTTGGAGGCACAAAGCGCATGGCAGAGGGCTCTTGCTAGAGCTGCTAGCCTaGCCTTCTCTGTGCTGGCAG +
Preference number: 3 (lower is better)
Translates to: PAKVGEFWRHKAHGRGLLLELLA*PSLCWQ
Trigger: CTGCCAGCACAGAGAAGGCAAGGCTAGCAGCTCTAG...CAAGAGCCCTCTGCCATGCGCTTTGTGCCTCCAAAACTCCCCCACCTTGGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR GCA 72 bp GAGCTGCTAGCCTTGCCTTCTCTGTGCTGGCAGATTTaGCCAAAGGAAGCTGGGGCTTGGGTAAGGGCTCCC +
Preference number: 3 (lower is better)
Translates to: ELLALPSLCWQI*PKEAGAWVRAP
Trigger: GGGAGCCCTTACCCAAGCCCCAGCTTCCTTTGGGCAAATCTGCCAGCACAGAGAAGGCAAGGCTAGCAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp GACCCTGCTGGGAGTGGCTCTCTGTGTTCTGGGTCCTaGCTGCCTCCATTTGAGGAGGTAATACTGGTCCGG +
Preference number: 3 (lower is better)
Translates to: DPAGSGSLCSGS*LPPFEEVILVR
Trigger: CCGGACCAGTATTACCTCCTCAAATGGAGGCAGCCAGGACCCAGAACACAGAGAGCCACTCCCAGCAGGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp GTAAGGATCAGAGCATTTTCTCAGGCTGACGGGGCCTaGACCAGGAGCAGCACAGACAGGCTCCCACCACCT +
Preference number: 3 (lower is better)
Translates to: VRIRAFSQADGA*TRSSTDRLPPP
Trigger: AGGTGGTGGGAGCCTGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCCTTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp CCCAGCGAGGCCTCAGGCATTTGGGTTTGGTTCAGCTaGGGTAGGGATGTTCCACCAAGGATGGCTGGTCTG +
Preference number: 3 (lower is better)
Translates to: PSEASGIWVWFS*GRDVPPRMAGL
Trigger: CAGACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGCCTGAGGCCTCGCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACACTAGAGCTGCTAGCCTaGCCTTCTCTGTGCTGGCAG +
Preference number: 3 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTLELLA*PSLCWQ
Trigger: CTGCCAGCACAGAGAAGGCAAGGCTAGCAGCTCTAG...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR TCA 72 bp TGGCTCTCTGTGTTCTGGGTCCTGGCTGCCTCCATTTaGGGAGGTAATACTGGTCCGGGAGCCCAAGGAGAG +
Preference number: 3 (lower is better)
Translates to: WLSVFWVLAASI*GGNTGPGAQGE
Trigger: CTCTCCTTGGGCTCCCGGACCAGTATTACCTCCTCAAATGGAGGCAGCCAGGACCCAGAACACAGAGAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR TCA 72 bp CCCATCTGGAGGTGCCCCCTGATGGCCATATTCCTCTaGAGTCAGCTCCATGAGAGAAGCCCTCGTCCCAGA +
Preference number: 3 (lower is better)
Translates to: PIWRCPLMAIFL*SQLHERSPRPR
Trigger: TCTGGGACGAGGGCTTCTCTCATGGAGCTGACTTCAGAGGAATATGGCCATCAGGGGGCACCTCCAGATGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR GCA 72 bp CTGCCTGAGCTGGTCATTCCAGCTGGACCATACTTTTaGATCCCAGGGCAAGGGAGGAGAGCTGGAGCCTCA +
Preference number: 3 (lower is better)
Translates to: LPELVIPAGPYF*IPGQGRRAGAS
Trigger: TGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGCTGGAATGACCAGCTCAGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp AGGAGAGGGGCAAGGGGTGGCCTGGAAGAGAAGGCATaGGGTGGGCCAGGTGATGGAAGGAATGGTTCAAAA +
Preference number: 3 (lower is better)
Translates to: RRGARGGLEEKA*GGPGDGRNGSK
Trigger: TTTTGAACCATTCCTTCCATCACCTGGCCCACCCCATGCCTTCTCTTCCAGGCCACCCCTTGCCCCTCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp GGTGCCCTAGAGCTGCTAGCCTTGCCTTCTCTGTGCTaGCAGATTTGCCCAAAGGAAGCTGGGGCTTGGGTA +
Preference number: 3 (lower is better)
Translates to: GALELLALPSLC*QICPKEAGAWV
Trigger: TACCCAAGCCCCAGCTTCCTTTGGGCAAATCTGCCAGCACAGAGAAGGCAAGGCTAGCAGCTCTAGGGCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp AGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTGGCTTTaGATCAGTTTTATCCCCTGTCTCTCCATGGTACCA +
Preference number: 3 (lower is better)
Translates to: RRLGPWPVLAWL*ISFIPCLSMVP
Trigger: TGGTACCATGGAGAGACAGGGGATAAAACTGATCCAAAGCCACGCCAGGACTGGCCACGGACCCAGCCTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp ACTGGAGCAACAGTGAGGGCAAGCGACCTTAGCAGAGAACCAGAGAGGCTCCCAAGCTGGACCATACTTTaGCATCCCAGGGCAAGGGAG +
Preference number: 3 (lower is better)
Translates to: TGATVRASDLSREPERLPSWTIL*HPRARE
Trigger: CTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGCT...TGGGAGCCTCTCTGGTTCTCTGCTAAGGTCGCTTGCCCTCACTGTTGCTCCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCTGGCCATGCCCCTACTaGGGAAGCACACTCAGAGAC +
Preference number: 3 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVWPCPY*GSTLRD
Trigger: GTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCA...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGCGAGGCCTCAGGCATTaGGGTTTGGTTCAGCTGGGG +
Preference number: 3 (lower is better)
Translates to: KLKDRAITPACRVHRSSQRGLRH*GLVQLG
Trigger: CCCCAGCTGAACCAAACCCAAATGCCTGAGGCCTCG...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR TCA 72 bp GAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTaGCGGGGCCTGGACCAGGAGCAGCACAGACAGGCT +
Preference number: 3 (lower is better)
Translates to: EEGSKDQSIFSG*RGLDQEQHRQA
Trigger: AGCCTGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp ACAGACAGGCTCCCACCACCTGGCCATGCCCCTACTTaGGAAGCACACTCAGAGACTCTGCTTTGGCATAGA +
Preference number: 3 (lower is better)
Translates to: TDRLPPPGHAPT*EAHSETLLWHR
Trigger: TCTATGCCAAAGCAGAGTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTGTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR TCA 72 bp CCCCCTGATGGCCATATTCCTCTGAAGTCAGCTCCATaGGAGAAGCCCTCGTCCCAGAAAACAAGCAGCCTG +
Preference number: 3 (lower is better)
Translates to: PPDGHIPLKSAP*EKPSSQKTSSL
Trigger: CAGGCTGCTTGTTTTCTGGGACGAGGGCTTCTCTCATGGAGCTGACTTCAGAGGAATATGGCCATCAGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp AGCCCTCGTCCCAGAAAACAAGCAGCCTGGGGTTTCTaGGGTGGGCAGGAAACAAAGTCCTTCAGGAAACTG +
Preference number: 3 (lower is better)
Translates to: SPRPRKQAAWGF*GGQETKSFRKL
Trigger: CAGTTTCCTGAAGGACTTTGTTTCCTGCCCACCCCAGAAACCCCAGGCTGCTTGTTTTCTGGGACGAGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGTCTGTGCTGGCAGATTaGCCCAAAGGAAGCTGGGGC +
Preference number: 3 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKSVLAD*PKGSWG
Trigger: GCCCCAGCTTCCTTTGGGCAAATCTGCCAGCACAGA...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR TCA 72 bp GGTCACAGCAGAAGCAGGGTGGTGGCCAGTTCCACTTaGTGCCTCTACAAACCTGGACCCTTTTCAATGGCT +
Preference number: 3 (lower is better)
Translates to: GHSRSRVVASST*CLYKPGPFSMA
Trigger: AGCCATTGAAAAGGGTCCAGGTTTGTAGAGGCATCAAGTGGAACTGGCCACCACCCTGCTTCTGCTGTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR TCA 72 bp GTTCCTGGGGACACTTCCTCAAGACCTTGTGTGCTCTaGCTGGAGGCAGGGGAAAGGAGCACCCTTAACATT +
Preference number: 3 (lower is better)
Translates to: VPGDTSSRPCVL*LEAGERSTLNI
Trigger: AATGTTAAGGGTGCTCCTTTCCCCTGCCTCCAGTCAGAGCACACAAGGTCTTGAGGAAGTGTCCCCAGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR CCA 72 bp GGTGGTGGCCAGTTCCACTTGATGCCTCTACAAACCTaGACCCTTTTCAATGGCTTCTCCAGCAGCAGGAAC +
Preference number: 3 (lower is better)
Translates to: GGGQFHLMPLQT*TLFNGFSSSRN
Trigger: GTTCCTGCTGCTGGAGAAGCCATTGAAAAGGGTCCAGGTTTGTAGAGGCATCAAGTGGAACTGGCCACCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR CCA 72 bp CAGTTCCACCTTGCTCTCAGCCCCCTTCTCCATATCTaGAACCAGCAGGCTGCTCAAGTGTCTACTTCCAAG +
Preference number: 3 (lower is better)
Translates to: QFHLALSPLLHI*NQQAAQVSTSK
Trigger: CTTGGAAGTAGACACTTGAGCAGCCTGCTGGTTCCAGATATGGAGAAGGGGGCTGAGAGCAAGGTGGAACTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR CCA 72 bp CCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTATaGGATGGGGAGAGCTTTAGGGATGAGCATCTAAGG +
Preference number: 3 (lower is better)
Translates to: PGAKGKRENCSL*DGESFRDEHLR
Trigger: CCTTAGATGCTCATCCCTAAAGCTCTCCCCATCCCATAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR CCA 72 bp GGTGGAGACCCCTCAGTAGCCTTTGGCCCTAAAGCCTaGGATTTGTTGTCCTGTGCCTGTATAGGTGAAGAG +
Preference number: 3 (lower is better)
Translates to: GGDPSVAFGPKA*DLLSCACIGEE
Trigger: CTCTTCACCTATACAGGCACAGGACAACAAATCCCAGGCTTTAGGGCCAAAGGCTACTGAGGGGTCTCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CAA 90 bp CGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGCTAGAGCTGCTAGCCTaGCCTTCTCTGTGCTGGCAG +
Preference number: 3 (lower is better)
Translates to: RNDLSGKKREVRIRAFSQLELLA*PSLCWQ
Trigger: CTGCCAGCACAGAGAAGGCAAGGCTAGCAGCTCTAG...CTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR TCA 72 bp GGGAGGATCCTCAGATCAATACAGCCAGAGACATTTTaGGCAGGGCCTGCCTTGTCTAAAGTCTGGGTGGAC +
Preference number: 3 (lower is better)
Translates to: GRILRSIQPETF*AGPALSKVWVD
Trigger: GTCCACCCAGACTTTAGACAAGGCAGGCCCTGCTCAAAATGTCTCTGGCTGTATTGATCTGAGGATCCTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR TCA 72 bp AGCCTGGGTAAGTGGCCTCTGACTTTCCCAACTCACTaGGGTACCTCTAGGCTACAGATGAGGTGGACTCAT +
Preference number: 3 (lower is better)
Translates to: SLGKWPLTFPTH*GTSRLQMRWTH
Trigger: ATGAGTCCACCTCATCTGTAGCCTAGAGGTACCTCAGTGAGTTGGGAAAGTCAGAGGCCACTTACCCAGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR TCA 72 bp CGATGTGACTTCAGAAACCCATCTGGAGGTGCCCCCTaGTGGCCATATTCCTCTGAAGTCAGCTCCATGAGA +
Preference number: 3 (lower is better)
Translates to: RCDFRNPSGGAP*WPYSSEVSSMR
Trigger: TCTCATGGAGCTGACTTCAGAGGAATATGGCCATCAGGGGGCACCTCCAGATGGGTTTCTGAAGTCACATCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp TCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTaGAGCCAATGGAGCCTGGGTAAGTGGCCTCTGACT +
Preference number: 3 (lower is better)
Translates to: SFRKLSANVVRA*SQWSLGKWPLT
Trigger: AGTCAGAGGCCACTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp GCCCCTACTTGGGAAGCACACTCAGAGACTCTGCTTTaGCATAGACAGGCAGACGATGTGACTTCAGAAACC +
Preference number: 3 (lower is better)
Translates to: APTWEAHSETLL*HRQADDVTSET
Trigger: GGTTTCTGAAGTCACATCGTCTGCCTGTCTATGCCAAAGCAGAGTCTCTGAGTGTGCTTCCCAAGTAGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CCA 72 bp CCACTTGATGCCTCTACAAACCTGGACCCTTTTCAATaGCTTCTCCAGCAGCAGGAACAGGGTAGACCACAG +
Preference number: 3 (lower is better)
Translates to: PLDASTNLDPFQ*LLQQQEQGRPQ
Trigger: CTGTGGTCTACCCTGTTCCTGCTGCTGGAGAAGCCATTGAAAAGGGTCCAGGTTTGTAGAGGCATCAAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CAA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACAGCTGGACCATACTTTaGCATCCCAGGGCAAGGGAG +
Preference number: 3 (lower is better)
Translates to: DLSGKKREVRIRAFSQADSWTIL*HPRARE
Trigger: CTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGCT...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTTGGCCATGCCCCTACTaGGGAAGCACACTCAGAGAC +
Preference number: 3 (lower is better)
Translates to: NDLSGKKREVRIRAFSQAWPCPY*GSTLRD
Trigger: GTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCA...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp AAGTCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCGAATCCCTGACACTATaGACATCTTGGGTTGGGGCG +
Preference number: 3 (lower is better)
Translates to: KSFRKLSANVVRAWSQWSESLTL*TSWVGA
Trigger: CGCCCCAACCCAAGATGTCAATAGTGTCAGGGATTC...GCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACGAATCCCTGACACTATaGACATCTTGGGTTGGGGCG +
Preference number: 3 (lower is better)
Translates to: DLSGKKREVRIRAFSQADESLTL*TSWVGA
Trigger: CGCCCCAACCCAAGATGTCAATAGTGTCAGGGATTC...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTAGGTGGCCAGTTCCACTaGATGCCTCTACAAACCTGG +
Preference number: 3 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLGGQFH*MPLQTW
Trigger: CCAGGTTTGTAGAGGCATCAAGTGGAACTGGCCACC...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR CCA 72 bp AAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATaGAGCCTGGGTAAGTGGCCTCTGACTTTCCCAACT +
Preference number: 3 (lower is better)
Translates to: KLSANVVRAWSQ*SLGKWPLTFPT
Trigger: AGTTGGGAAAGTCAGAGGCCACTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTAGAATCCCTGACACTATaGACATCTTGGGTTGGGGCG +
Preference number: 3 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLESLTL*TSWVGA
Trigger: CGCCCCAACCCAAGATGTCAATAGTGTCAGGGATTC...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR-3UTR CAA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTCGAGGCCTCAGGCATTaGGGTTTGGTTCAGCTGGGG +
Preference number: 3 (lower is better)
Translates to: SSYIYFLSRASTVARETCRGLRH*GLVQLG
Trigger: CCCCAGCTGAACCAAACCCAAATGCCTGAGGCCTCG...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR-3UTR CAA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTCAAGGTGGGGGAGTTTaGGAGGCACAAAGCGCATGG +
Preference number: 3 (lower is better)
Translates to: SSYIYFLSRASTVARETCQGGGV*EAQSAW
Trigger: CCATGCGCTTTGTGCCTCCAAAACTCCCCCACCTTG...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR GCA 72 bp TGCTTGAACACATTGATCATGAACTCTGTTCAACGTTaGCTCTGTTCAGAAATCCTCACTGAACCCCATCAG +
Preference number: 3 (lower is better)
Translates to: CLNTLIMNSVQR*LCSEILTEPHQ
Trigger: CTGATGGGGTTCAGTGAGGATTTCTGAACAGAGGCAACGTTGAACAGAGTTCATGATCAATGTGTTCAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGAGCCACCGGCTGTGCTaGAGCTCGGCTGGCCCAGTG +
Preference number: 4 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLASHRLC*SSAGPV
Trigger: CACTGGGCCAGCCGAGCTCCAGCACAGCCGGTGGCT...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGAGCCACCGGCTGTGCTaGAGCTCGGCTGGCCCAGTG +
Preference number: 4 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWSHRLC*SSAGPV
Trigger: CACTGGGCCAGCCGAGCTCCAGCACAGCCGGTGGCT...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGGGTCCTGTGTGTCCTTaGGCCGGGCCTTCAGGTGCC +
Preference number: 4 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWGPVCP*AGPSGA
Trigger: GGCACCTGAAGGCCCGGCTCAAGGACACACAGGACC...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCGCTCGGCTGGCCCAGTaGGCGGCAGCTGATCCTACG +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSARLAQ*AAADPT
Trigger: CGTAGGATCAGCTGCCGCTCACTGGGCCAGCCGAGC...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGGCTTCTCGTAGGTGTTaGTGGCAGGGAAGCGGGGGC +
Preference number: 4 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLAASRRC*WQGSGG
Trigger: GCCCCCGCTTCCCTGCCAGCAACACCTACGAGAAGC...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCGCTGGCGGGCACCTGTaGGCACTGGGCGAACACTGC +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSAGGHL*ALGEHC
Trigger: GCAGTGTTCGCCCAGTGCCCACAGGTGCCCGCCAGC...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTGCTGCTCATTCTGGCTaGCGGGCACCTGTGGGCACT +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRAAHSG*RAPVGT
Trigger: AGTGCCCACAGGTGCCCGCCAGCCAGAATGAGCAGC...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGGAGGGATCCCCTGGCTaGCGGTCACCACAGACGGCT +
Preference number: 4 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWEGSPG*RSPQTA
Trigger: AGCCGTCTGTGGTGACCGCCAGCCAGGGGATCCCTC...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGGTTGGAGGGATCCCCTaGCTGGCGGTCACCACAGAC +
Preference number: 4 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLAVGGIP*LAVTTD
Trigger: GTCTGTGGTGACCGCCAGCCAGGGGATCCCTCCAAC...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTGTTGGAGGGATCCCCTaGCTGGCGGTCACCACAGAC +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRVGGIP*LAVTTD
Trigger: GTCTGTGGTGACCGCCAGCCAGGGGATCCCTCCAAC...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTTCTCGTAGGTGTTGCTaGCAGGGAAGCGGGGGCCCA +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRSRRCC*QGSGGP
Trigger: TGGGCCCCCGCTTCCCTGCCAGCAACACCTACGAGA...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTAGGAGACCCACCTGCTaGCTCCCCTGTTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRRRPTC*LPCSFL
Trigger: GAGGAAGGAACAGGGGAGTCAGCAGGTGGGTCTCCT...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCGCCTCGGTGTGGGGCTaGTGTCACTGCCCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSASVWG*CHCPCR
Trigger: CCTGCAAGGGCAGTGACAGCAGCCCCACACCGAGGC...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR GCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCAGTGCAAGGCCACCGTaGAGCAACCCCGCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSSARPP*SNPAAG
Trigger: CCCTGCTGCGGGGTTGCTGCACGGTGGCCTTGCACT...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGCTGGGTCACTCAGCTTaGTGTAGGTGGAGCTGCGGG +
Preference number: 4 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLALGHSA*CRWSCG
Trigger: CCCGCAGCTCCACCTACACCAAGCTGAGTGACCCAG...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTACAGGTGATGGGCTCTaGGGCCTCAAGCTCGTCACC +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRTGDGL*GLKLVT
Trigger: GGTGACGAGCTTGAGGCCCCAGAGCCCATCACCTGT...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGGTTCCTTTTCGGTGGTaGTGGCAGCGGCTGCCTCCT +
Preference number: 4 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLAVPFRW*WQRLPP
Trigger: AGGAGGCAGCCGCTGCCACCACCACCGAAAAGGAAC...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTGTTCCTTTTCGGTGGTaGTGGCAGCGGCTGCCTCCT +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRVPFRW*WQRLPP
Trigger: AGGAGGCAGCCGCTGCCACCACCACCGAAAAGGAAC...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTGAGCCAGGCCACTGTTaGCACAGCTGGCACTACCAC +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWREPGHC*HSWHYH
Trigger: GTGGTAGTGCCAGCTGTGCCAACAGTGGCCTGGCTC...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCAGGTGGAGCTGCGGGTaGGGGACCGTGCAGGAGACC +
Preference number: 4 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLRWSCG*GTVQET
Trigger: GGTCTCCTGCACGGTCCCTCACCCGCAGCTCCACCT...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR TCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCAGCGGGGGCCCAGGTTaGAGGAGCTGTGCAGCGAGG +
Preference number: 4 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLSGGPG*RSCAAR
Trigger: CCTCGCTGCACAGCTCCTTCAACCTGGGCCCCCGCT...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR TCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTGTGGGGATCCAGCTCTaGGTGCCTGTCTTTGAGGAC +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRVGIQL*VPVFED
Trigger: GTCCTCAAAGACAGGCACTCAGAGCTGGATCCCCAC...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GAGGGTGAGATGCAGGACTCTACCAGCTCCCTGGAGGTGGGCCAGTCAGGTCGGAGGGTCTCTGGGCCCTaGAGGGTGGGGATCCAGCTC +
Preference number: 4 (lower is better)
Translates to: EGEMQDSTSSLEVGQSGRRVSGP*RVGIQL
Trigger: GAGCTGGATCCCCACCCTTCAGGGCCCAGAGACCCT...CCGACCTGACTGGCCCACCTCCAGGGAGCTGGTAGAGTCCTGCATCTCACCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGCCAGTGAGCGGCAGCTaGTCCTACGGATGGAGTGCA +
Preference number: 4 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWPVSGS*SYGWSA
Trigger: TGCACTCCATCCGTAGGATCAGCTGCCGCTCACTGG...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTTTTCAGGGCCAGCTGTaGTTCTACGCGGTGGCACTC +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRFQGQL*FYAVAL
Trigger: GAGTGCCACCGCGTAGAAGCACAGCTGGCCCTGAAA...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGATGACCTGCTTGAGCTaGCGGATCTCCTTGCGGGCC +
Preference number: 4 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWMTCLS*RISLRA
Trigger: GGCCCGCAAGGAGATCCGGCAGCTCAAGCAGGTCAT...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTTCTGGGCCACCTCCATaGTGTGCAGCAAGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRSGPPP*CAARSP
Trigger: TGGAGACCTTGCTGCACAGCATGGAGGTGGCCCAGA...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCGCTTCTCGTAGGTGTTaGTGGCAGGGAAGCGGGGGC +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSASRRC*WQGSGG
Trigger: GCCCCCGCTTCCCTGCCAGCAACACCTACGAGAAGC...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GAGGGTGAGATGCAGGACTCTACCAGCTCCCTGGAGGTGGGCCAGTCAGGTCGGGAGGGATCCCCTGGCTaGCGGTCACCACAGACGGCT +
Preference number: 4 (lower is better)
Translates to: EGEMQDSTSSLEVGQSGREGSPG*RSPQTA
Trigger: AGCCGTCTGTGGTGACCGCCAGCCAGGGGATCCCTC...CCGACCTGACTGGCCCACCTCCAGGGAGCTGGTAGAGTCCTGCATCTCACCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTCTCGTAGGTGTTGCTaGCAGGGAAGCGGGGGCCCA +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSSRRCC*QGSGGP
Trigger: TGGGCCCCCGCTTCCCTGCCAGCAACACCTACGAGA...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTCAAAGTCTGTCTGGATaGCCCGCTCCTGCATGCAGC +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRQSLSG*PAPACS
Trigger: GCTGCATGCAGGAGCGGGCCATCCAGACAGACTTTG...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGACAGGTGATGGGCTCTaGGGCCTCAAGCTCGTCACC +
Preference number: 4 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWTGDGL*GLKLVT
Trigger: GGTGACGAGCTTGAGGCCCCAGAGCCCATCACCTGT...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGCACTGTTGGCACAGCTaGCACTACCACAGCCAGCAG +
Preference number: 4 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLAHCWHS*HYHSQQ
Trigger: CTGCTGGCTGTGGTAGTGCCAGCTGTGCCAACAGTG...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCAGGAGACCCACCTGCTaGCTCCCCTGTTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSRRPTC*LPCSFL
Trigger: GAGGAAGGAACAGGGGAGTCAGCAGGTGGGTCTCCT...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGTGACTACCACTGCTaGGTCAGGGTCTCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSCDYHC*VRVSGP
Trigger: GGGCCCAGAGACCCTGACTCAGCAGTGGTAGTCACA...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCATGACCTGCTTGAGCTaGCGGATCTCCTTGCGGGCC +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSMTCLS*RISLRA
Trigger: GGCCCGCAAGGAGATCCGGCAGCTCAAGCAGGTCAT...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGAGGTTGAAGGAGCTGTaGAGCGAGGCTTCCTCAAGG +
Preference number: 4 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLARLKEL*SEASSR
Trigger: CCTTGAGGAAGCCTCGCTGCACAGCTCCTTCAACCT...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGTTGGCGACTCCATTCTaGGCCACCTCCATGCTGTGC +
Preference number: 4 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWLATPF*ATSMLC
Trigger: GCACAGCATGGAGGTGGCCCAGAATGGAGTCGCCAA...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCGAGGGATCCCCTGGCTaGCGGTCACCACAGACGGCT +
Preference number: 4 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLEGSPG*RSPQTA
Trigger: AGCCGTCTGTGGTGACCGCCAGCCAGGGGATCCCTC...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTTGCACAAAGTCTGTCTaGATGGCCCGCTCCTGCATG +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRCTKSV*MARSCM
Trigger: CATGCAGGAGCGGGCCATCCAGACAGACTTTGTGCA...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTACTCACGGGCAGTCCTaGGTTAGAGTTGACTGCAGG +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRTHGQS*VRVDCR
Trigger: CCTGCAGTCAACTCTAACCCAGGACTGCCCGTGAGT...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp ACAGGCTCCCACCACCTGGCCATGCCCCTACTTGGGAAGCACACTCAGAGACTCAGCCACCGGCTGTGCTaGAGCTCGGCTGGCCCAGTG +
Preference number: 4 (lower is better)
Translates to: TGSHHLAMPLLGKHTQRLSHRLC*SSAGPV
Trigger: CACTGGGCCAGCCGAGCTCCAGCACAGCCGGTGGCT...GAGTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACAAGGTGGAGCTGCGGGTaGGGGACCGTGCAGGAGACC +
Preference number: 4 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTRWSCG*GTVQET
Trigger: GGTCTCCTGCACGGTCCCTCACCCGCAGCTCCACCT...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGCTGAGTGCCTGTCTTTaGGGACTGAACCGCACACCT +
Preference number: 4 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWLSACL*GLNRTP
Trigger: AGGTGTGCGGTTCAGTCCTCAAAGACAGGCACTCAG...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCGTGGGGATCCAGCTCTaGGTGCCTGTCTTTGAGGAC +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSVGIQL*VPVFED
Trigger: GTCCTCAAAGACAGGCACTCAGAGCTGGATCCCCAC...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp TGGCTGCCTCCATTTGAGGAGGTAATACTGGTCCGGGAGCCCAAGGAGAGGGGCAGGGTCTCTGGGCCCTaGAGGGTGGGGATCCAGCTC +
Preference number: 4 (lower is better)
Translates to: WLPPFEEVILVREPKERGRVSGP*RVGIQL
Trigger: GAGCTGGATCCCCACCCTTCAGGGCCCAGAGACCCT...GCCCCTCTCCTTGGGCTCCCGGACCAGTATTACCTCCTCAAATGGAGGCAGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCTGTGACTACCACTGCTaGGTCAGGGTCTCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: EAQSAWQRALALMARLAACDYHC*VRVSGP
Trigger: GGGCCCAGAGACCCTGACTCAGCAGTGGTAGTCACA...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGGCTCGTCACCTACTGTaGCTACCACTGCTGAGTCAG +
Preference number: 4 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWARHLL*LPLLSQ
Trigger: CTGACTCAGCAGTGGTAGTCACAGTAGGTGACGAGC...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCCCAGTGAGCGGCAGCTaGTCCTACGGATGGAGTGCA +
Preference number: 4 (lower is better)
Translates to: EAQSAWQRALALMARLAAPVSGS*SYGWSA
Trigger: TGCACTCCATCCGTAGGATCAGCTGCCGCTCACTGG...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACAGCTGGCGGGCACCTGTaGGCACTGGGCGAACACTGC +
Preference number: 4 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTAGGHL*ALGEHC
Trigger: GCAGTGTTCGCCCAGTGCCCACAGGTGCCCGCCAGC...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp GCTGGACCATACTTTTGCATCCCAGGGCAAGGGAGGAGAGCTGGAGCCTCAGTGGTGGAGAGGTGCGCCTaGAGGCGGGGAGAAGAGGCC +
Preference number: 4 (lower is better)
Translates to: AGPYFCIPGQGRRAGASVVERCA*RRGEEA
Trigger: GGCCTCTTCTCCCCGCCTCCAGGCGCACCTCTCCAC...CACTGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGAGTCAGATACTGTTCTaGGGTGGGAGGCTTGATGCC +
Preference number: 4 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLASQILF*GGRLDA
Trigger: GGCATCAAGCCTCCCACCCCAGAACAGTATCTGACT...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCTCCGTGTCCCTATCCTaGAGCCGGTCCTGTGTGTCC +
Preference number: 4 (lower is better)
Translates to: EAQSAWQRALALMARLAASVSLS*SRSCVS
Trigger: GGACACACAGGACCGGCTCCAGGATAGGGACACGGA...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCCTGAGTCAGGGTCTCTaGGCCCTGAAGGGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: EAQSAWQRALALMARLAALSQGL*ALKGGD
Trigger: ATCCCCACCCTTCAGGGCCCAGAGACCCTGACTCAG...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCGTTCCTTTTCGGTGGTaGTGGCAGCGGCTGCCTCCT +
Preference number: 4 (lower is better)
Translates to: EAQSAWQRALALMARLAAVPFRW*WQRLPP
Trigger: AGGAGGCAGCCGCTGCCACCACCACCGAAAAGGAAC...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GCTGGACCATACTTTTGCATCCCAGGGCAAGGGAGGAGAGCTGGAGCCTCAGTGAGGGTCTCTGGGCCCTaGAGGGTGGGGATCCAGCTC +
Preference number: 4 (lower is better)
Translates to: AGPYFCIPGQGRRAGASVRVSGP*RVGIQL
Trigger: GAGCTGGATCCCCACCCTTCAGGGCCCAGAGACCCT...CACTGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACAAGGCCGGTGTGTGGCTaGCCCACAGGTGATGGGCTC +
Preference number: 4 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTRPVCG*PTGDGL
Trigger: GAGCCCATCACCTGTGGGCCAGCCACACACCGGCCT...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCCACTGTTGGCACAGCTaGCACTACCACAGCCAGCAG +
Preference number: 4 (lower is better)
Translates to: EAQSAWQRALALMARLAAHCWHS*HYHSQQ
Trigger: CTGCTGGCTGTGGTAGTGCCAGCTGTGCCAACAGTG...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCGGAGGCTTGATGCCGTaGTTGTCGCTGCATAGTGTG +
Preference number: 4 (lower is better)
Translates to: EAQSAWQRALALMARLAAGGLMP*LSLHSV
Trigger: CACACTATGCAGCGACAATCACGGCATCAAGCCTCC...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp ACAGGCTCCCACCACCTGGCCATGCCCCTACTTGGGAAGCACACTCAGAGACTCACTGAACCGCACACCTaGGCCTGGCCCACTTTCTCC +
Preference number: 4 (lower is better)
Translates to: TGSHHLAMPLLGKHTQRLTEPHT*AWPTFS
Trigger: GGAGAAAGTGGGCCAGGCTCAGGTGTGCGGTTCAGT...GAGTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCCTGAGTGCCTGTCTTTaGGGACTGAACCGCACACCT +
Preference number: 4 (lower is better)
Translates to: EAQSAWQRALALMARLAALSACL*GLNRTP
Trigger: AGGTGTGCGGTTCAGTCCTCAAAGACAGGCACTCAG...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp CCAGCCAAGGTGGGGGAGTTTTGGAGGCACAAAGCGCATGGCAGAGGGCTCTTGTGTGACTACCACTGCTaGGTCAGGGTCTCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: PAKVGEFWRHKAHGRGLLCDYHC*VRVSGP
Trigger: GGGCCCAGAGACCCTGACTCAGCAGTGGTAGTCACA...CAAGAGCCCTCTGCCATGCGCTTTGTGCCTCCAAAACTCCCCCACCTTGGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GAGGGTGAGATGCAGGACTCTACCAGCTCCCTGGAGGTGGGCCAGTCAGGTCGGGCTCGTCACCTACTGTaGCTACCACTGCTGAGTCAG +
Preference number: 4 (lower is better)
Translates to: EGEMQDSTSSLEVGQSGRARHLL*LPLLSQ
Trigger: CTGACTCAGCAGTGGTAGTCACAGTAGGTGACGAGC...CCGACCTGACTGGCCCACCTCCAGGGAGCTGGTAGAGTCCTGCATCTCACCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCGCTCGTCACCTACTGTaGCTACCACTGCTGAGTCAG +
Preference number: 4 (lower is better)
Translates to: EAQSAWQRALALMARLAAARHLL*LPLLSQ
Trigger: CTGACTCAGCAGTGGTAGTCACAGTAGGTGACGAGC...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp ACTGGAGCAACAGTGAGGGCAAGCGACCTTAGCAGAGAACCAGAGAGGCTCCCAGGGAGAAGAGGCCGCTaGTCATTCTGGCTGGCGGGC +
Preference number: 4 (lower is better)
Translates to: TGATVRASDLSREPERLPGRRGR*SFWLAG
Trigger: GCCCGCCAGCCAGAATGAGCAGCGGCCTCTTCTCCC...TGGGAGCCTCTCTGGTTCTCTGCTAAGGTCGCTTGCCCTCACTGTTGCTCCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR GCA 90 bp GAGGGTGAGATGCAGGACTCTACCAGCTCCCTGGAGGTGGGCCAGTCAGGTCGGACAGTGTCGATGACCTaGTTGAGCTGCCGGATCTCC +
Preference number: 4 (lower is better)
Translates to: EGEMQDSTSSLEVGQSGRTVSMT*LSCRIS
Trigger: GGAGATCCGGCAGCTCAAGCAGGTCATCGACACTGT...CCGACCTGACTGGCCCACCTCCAGGGAGCTGGTAGAGTCCTGCATCTCACCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTTCCACAAAGTACTTCTaGAGCCCCTTGTCCTTGTCA +
Preference number: 4 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRSTKYF*SPLSLS
Trigger: TGACAAGGACAAGGGGCTGCAGAAGTACTTTGTGGA...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCTCTGGGCCACCTCCATaGTGTGCAGCAAGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLSGPPP*CAARSP
Trigger: TGGAGACCTTGCTGCACAGCATGGAGGTGGCCCAGA...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp ACTGGAGCAACAGTGAGGGCAAGCGACCTTAGCAGAGAACCAGAGAGGCTCCCATGGAGCGCCTCGGTGTaGGGCTGCTGTCACTGCCCT +
Preference number: 4 (lower is better)
Translates to: TGATVRASDLSREPERLPWSASV*GCCHCP
Trigger: AGGGCAGTGACAGCAGCCCCACACCGAGGCGCTCCA...TGGGAGCCTCTCTGGTTCTCTGCTAAGGTCGCTTGCCCTCACTGTTGCTCCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCAGTCAGATACTGTTCTaGGGTGGGAGGCTTGATGCC +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSSQILF*GGRLDA
Trigger: GGCATCAAGCCTCCCACCCCAGAACAGTATCTGACT...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp CCAGCCAAGGTGGGGGAGTTTTGGAGGCACAAAGCGCATGGCAGAGGGCTCTTGTCCGTGTCCCTATCCTaGAGCCGGTCCTGTGTGTCC +
Preference number: 4 (lower is better)
Translates to: PAKVGEFWRHKAHGRGLLSVSLS*SRSCVS
Trigger: GGACACACAGGACCGGCTCCAGGATAGGGACACGGA...CAAGAGCCCTCTGCCATGCGCTTTGTGCCTCCAAAACTCCCCCACCTTGGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GAGGGTGAGATGCAGGACTCTACCAGCTCCCTGGAGGTGGGCCAGTCAGGTCGGCTGTTCCTTCCTCCTTaGCGACTCCATTCTGGGCCA +
Preference number: 4 (lower is better)
Translates to: EGEMQDSTSSLEVGQSGRLFLPP*RLHSGP
Trigger: TGGCCCAGAATGGAGTCGCCAAGGAGGAAGGAACAG...CCGACCTGACTGGCCCACCTCCAGGGAGCTGGTAGAGTCCTGCATCTCACCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp CCAGCCAAGGTGGGGGAGTTTTGGAGGCACAAAGCGCATGGCAGAGGGCTCTTGCTGGGTCACTCAGCTTaGTGTAGGTGGAGCTGCGGG +
Preference number: 4 (lower is better)
Translates to: PAKVGEFWRHKAHGRGLLLGHSA*CRWSCG
Trigger: CCCGCAGCTCCACCTACACCAAGCTGAGTGACCCAG...CAAGAGCCCTCTGCCATGCGCTTTGTGCCTCCAAAACTCCCCCACCTTGGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp CCACTGGGCTCCAAGGGCCCAGTAGAAGGTAGTTCCTGGGGACACTTCCTCAAGCTGGGCCCTGAAGGGTaGGGATCCAGCTCTGAGTGC +
Preference number: 4 (lower is better)
Translates to: PLGSKGPVEGSSWGHFLKLGPEG*GSSSEC
Trigger: GCACTCAGAGCTGGATCCCCACCCTTCAGGGCCCAG...CTTGAGGAAGTGTCCCCAGGAACTACCTTCTACTGGGCCCTTGGAGCCCAGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp GCTGGACCATACTTTTGCATCCCAGGGCAAGGGAGGAGAGCTGGAGCCTCAGTGCTGGGCCCTGAAGGGTaGGGATCCAGCTCTGAGTGC +
Preference number: 4 (lower is better)
Translates to: AGPYFCIPGQGRRAGASVLGPEG*GSSSEC
Trigger: GCACTCAGAGCTGGATCCCCACCCTTCAGGGCCCAG...CACTGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp CCAGCCAAGGTGGGGGAGTTTTGGAGGCACAAAGCGCATGGCAGAGGGCTCTTGGAGCCAGGCCACTGTTaGCACAGCTGGCACTACCAC +
Preference number: 4 (lower is better)
Translates to: PAKVGEFWRHKAHGRGLLEPGHC*HSWHYH
Trigger: GTGGTAGTGCCAGCTGTGCCAACAGTGGCCTGGCTC...CAAGAGCCCTCTGCCATGCGCTTTGTGCCTCCAAAACTCCCCCACCTTGGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp ACTGGAGCAACAGTGAGGGCAAGCGACCTTAGCAGAGAACCAGAGAGGCTCCCAGCTCCTGCATGCAGCTaGCCTGCACACCAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: TGATVRASDLSREPERLPAPACS*PAHQPP
Trigger: TGGAGGCTGGTGTGCAGGTCAGCTGCATGCAGGAGC...TGGGAGCCTCTCTGGTTCTCTGCTAAGGTCGCTTGCCCTCACTGTTGCTCCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp CCAGCCAAGGTGGGGGAGTTTTGGAGGCACAAAGCGCATGGCAGAGGGCTCTTGGTGGGGATCCAGCTCTaGGTGCCTGTCTTTGAGGAC +
Preference number: 4 (lower is better)
Translates to: PAKVGEFWRHKAHGRGLLVGIQL*VPVFED
Trigger: GTCCTCAAAGACAGGCACTCAGAGCTGGATCCCCAC...CAAGAGCCCTCTGCCATGCGCTTTGTGCCTCCAAAACTCCCCCACCTTGGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp CCACTGGGCTCCAAGGGCCCAGTAGAAGGTAGTTCCTGGGGACACTTCCTCAAGCCCGCAGCAGGGAGCTaGTGTTGTAAATGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: PLGSKGPVEGSSWGHFLKPAAGS*CCKWAG
Trigger: GCCAGCCCATTTACAACATCAGCTCCCTGCTGCGGG...CTTGAGGAAGTGTCCCCAGGAACTACCTTCTACTGGGCCCTTGGAGCCCAGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR GCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCGCCTCGGTGTGGGGCTaGTGTCACTGCCCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVASVWG*CHCPCR
Trigger: CCTGCAAGGGCAGTGACAGCAGCCCCACACCGAGGC...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR GCA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGCAAACCTCCTTCTGTTaGAGTGGAGTCAGATACTGT +
Preference number: 4 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLAQTSFC*SGVRYC
Trigger: ACAGTATCTGACTCCACTGCAACAGAAGGAGGTTTG...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTGCTTCTCGTAGGTGTTaGTGGCAGGGAAGCGGGGGC +
Preference number: 4 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVASRRC*WQGSGG
Trigger: GCCCCCGCTTCCCTGCCAGCAACACCTACGAGAAGC...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCCGCTGCTCATTCTaGCTGGCGGGCACCTGTGGG +
Preference number: 4 (lower is better)
Translates to: KLKDRAITPACRVHRSSQGRCSF*LAGTCG
Trigger: CCCACAGGTGCCCGCCAGCCAGAATGAGCAGCGGCC...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCCCGCACACTCACAGGTaGAGAGGTGCGCCTGGAGGC +
Preference number: 4 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVPHTHR*RGAPGG
Trigger: GCCTCCAGGCGCACCTCTCCACCTGTGAGTGTGCGG...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACACTGGGTCACTCAGCTTaGTGTAGGTGGAGCTGCGGG +
Preference number: 4 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTLGHSA*CRWSCG
Trigger: CCCGCAGCTCCACCTACACCAAGCTGAGTGACCCAG...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCGAGGGATCCCCTGGCTaGCGGTCACCACAGACGGCT +
Preference number: 4 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVEGSPG*RSPQTA
Trigger: AGCCGTCTGTGGTGACCGCCAGCCAGGGGATCCCTC...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp ACTGGAGCAACAGTGAGGGCAAGCGACCTTAGCAGAGAACCAGAGAGGCTCCCATCTCGTAGGTGTTGCTaGCAGGGAAGCGGGGGCCCA +
Preference number: 4 (lower is better)
Translates to: TGATVRASDLSREPERLPSRRCC*QGSGGP
Trigger: TGGGCCCCCGCTTCCCTGCCAGCAACACCTACGAGA...TGGGAGCCTCTCTGGTTCTCTGCTAAGGTCGCTTGCCCTCACTGTTGCTCCAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp ACAGGCTCCCACCACCTGGCCATGCCCCTACTTGGGAAGCACACTCAGAGACTCCAAAGTCTGTCTGGATaGCCCGCTCCTGCATGCAGC +
Preference number: 4 (lower is better)
Translates to: TGSHHLAMPLLGKHTQRLQSLSG*PAPACS
Trigger: GCTGCATGCAGGAGCGGGCCATCCAGACAGACTTTG...GAGTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GCTGGACCATACTTTTGCATCCCAGGGCAAGGGAGGAGAGCTGGAGCCTCAGTGACAGGTGATGGGCTCTaGGGCCTCAAGCTCGTCACC +
Preference number: 4 (lower is better)
Translates to: AGPYFCIPGQGRRAGASVTGDGL*GLKLVT
Trigger: GGTGACGAGCTTGAGGCCCCAGAGCCCATCACCTGT...CACTGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCAGGCCGGTGTGTGGCTaGCCCACAGGTGATGGGCTC +
Preference number: 4 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVRPVCG*PTGDGL
Trigger: GAGCCCATCACCTGTGGGCCAGCCACACACCGGCCT...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CAA 72 bp CAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTGGCTTaGGATCAGTTTTATCCCCTGTCTCTCCATGGTACC +
Preference number: 4 (lower is better)
Translates to: QEAGSVASPGVA*DQFYPLSLHGT
Trigger: GGTACCATGGAGAGACAGGGGATAAAACTGATCCAAAGCCACGCCAGGACTGGCCACGGACCCAGCCTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTAGGAGACCCACCTGCTaGCTCCCCTGTTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVRRPTC*LPCSFL
Trigger: GAGGAAGGAACAGGGGAGTCAGCAGGTGGGTCTCCT...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR TCA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGAGGTGGAGCTGCGGGTaGGGGACCGTGCAGGAGACC +
Preference number: 4 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKRWSCG*GTVQET
Trigger: GGTCTCCTGCACGGTCCCTCACCCGCAGCTCCACCT...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GCTGGACCATACTTTTGCATCCCAGGGCAAGGGAGGAGAGCTGGAGCCTCAGTGGTGGGGATCCAGCTCTaGGTGCCTGTCTTTGAGGAC +
Preference number: 4 (lower is better)
Translates to: AGPYFCIPGQGRRAGASVVGIQL*VPVFED
Trigger: GTCCTCAAAGACAGGCACTCAGAGCTGGATCCCCAC...CACTGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp GCTGGACCATACTTTTGCATCCCAGGGCAAGGGAGGAGAGCTGGAGCCTCAGTGTGCTGTCACTGCCCTTaGAGGAGCCAGAGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: AGPYFCIPGQGRRAGASVCCHCP*RSQSCC
Trigger: GCAGCAACTCTGGCTCCTGCAAGGGCAGTGACAGCA...CACTGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR GCA 90 bp CCACTGGGCTCCAAGGGCCCAGTAGAAGGTAGTTCCTGGGGACACTTCCTCAAGTTTCAGGGCCAGCTGTaGTTCTACGCGGTGGCACTC +
Preference number: 4 (lower is better)
Translates to: PLGSKGPVEGSSWGHFLKFQGQL*FYAVAL
Trigger: GAGTGCCACCGCGTAGAAGCACAGCTGGCCCTGAAA...CTTGAGGAAGTGTCCCCAGGAACTACCTTCTACTGGGCCCTTGGAGCCCAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR GCA 90 bp ACAGGCTCCCACCACCTGGCCATGCCCCTACTTGGGAAGCACACTCAGAGACTCACAGTGTCGATGACCTaGTTGAGCTGCCGGATCTCC +
Preference number: 4 (lower is better)
Translates to: TGSHHLAMPLLGKHTQRLTVSMT*LSCRIS
Trigger: GGAGATCCGGCAGCTCAAGCAGGTCATCGACACTGT...GAGTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTCCACAAAGTACTTCTaGAGCCCCTTGTCCTTGTCA +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSSTKYF*SPLSLS
Trigger: TGACAAGGACAAGGGGCTGCAGAAGTACTTTGTGGA...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACATCTGGGCCACCTCCATaGTGTGCAGCAAGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTSGPPP*CAARSP
Trigger: TGGAGACCTTGCTGCACAGCATGGAGGTGGCCCAGA...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp CCAGCCAAGGTGGGGGAGTTTTGGAGGCACAAAGCGCATGGCAGAGGGCTCTTGAGGTTGAAGGAGCTGTaGAGCGAGGCTTCCTCAAGG +
Preference number: 4 (lower is better)
Translates to: PAKVGEFWRHKAHGRGLLRLKEL*SEASSR
Trigger: CCTTGAGGAAGCCTCGCTGCACAGCTCCTTCAACCT...CAAGAGCCCTCTGCCATGCGCTTTGTGCCTCCAAAACTCCCCCACCTTGGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp AGACATTTTGAGCAGGGCCTGCCTTGTCTAAAGTCTGGGTGGACAGAGGGGACAAGTGCAAGGCCACCGTaGAGCAACCCCGCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: RHFEQGLPCLKSGWTEGTSARPP*SNPAAG
Trigger: CCCTGCTGCGGGGTTGCTGCACGGTGGCCTTGCACT...TGTCCCCTCTGTCCACCCAGACTTTAGACAAGGCAGGCCCTGCTCAAAATGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AGACATTTTGAGCAGGGCCTGCCTTGTCTAAAGTCTGGGTGGACAGAGGGGACACCGCACACTCACAGGTaGAGAGGTGCGCCTGGAGGC +
Preference number: 4 (lower is better)
Translates to: RHFEQGLPCLKSGWTEGTPHTHR*RGAPGG
Trigger: GCCTCCAGGCGCACCTCTCCACCTGTGAGTGTGCGG...TGTCCCCTCTGTCCACCCAGACTTTAGACAAGGCAGGCCCTGCTCAAAATGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCCTCCTTCTGTTGCAGTaGAGTCAGATACTGTTCTGG +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSLLLLQ*SQILFW
Trigger: CCAGAACAGTATCTGACTCCACTGCAACAGAAGGAG...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp TGGCTGCCTCCATTTGAGGAGGTAATACTGGTCCGGGAGCCCAAGGAGAGGGGCGTCACCACAGACGGCTaGGTCACTCAGCTTGGTGTA +
Preference number: 4 (lower is better)
Translates to: WLPPFEEVILVREPKERGVTTDG*VTQLGV
Trigger: TACACCAAGCTGAGTGACCCAGCCGTCTGTGGTGAC...GCCCCTCTCCTTGGGCTCCCGGACCAGTATTACCTCCTCAAATGGAGGCAGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp TGGCTGCCTCCATTTGAGGAGGTAATACTGGTCCGGGAGCCCAAGGAGAGGGGCTGCACAAAGTCTGTCTaGATGGCCCGCTCCTGCATG +
Preference number: 4 (lower is better)
Translates to: WLPPFEEVILVREPKERGCTKSV*MARSCM
Trigger: CATGCAGGAGCGGGCCATCCAGACAGACTTTGTGCA...GCCCCTCTCCTTGGGCTCCCGGACCAGTATTACCTCCTCAAATGGAGGCAGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGAGCCACCGGCTGTGCTaGAGCTCGGCTGGCCCAGTG +
Preference number: 4 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKSHRLC*SSAGPV
Trigger: CACTGGGCCAGCCGAGCTCCAGCACAGCCGGTGGCT...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACAGGAGGCTTGATGCCGTaGTTGTCGCTGCATAGTGTG +
Preference number: 4 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTGGLMP*LSLHSV
Trigger: CACACTATGCAGCGACAATCACGGCATCAAGCCTCC...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GCTGGACCATACTTTTGCATCCCAGGGCAAGGGAGGAGAGCTGGAGCCTCAGTGGGAGGCTTGATGCCGTaGTTGTCGCTGCATAGTGTG +
Preference number: 4 (lower is better)
Translates to: AGPYFCIPGQGRRAGASVGGLMP*LSLHSV
Trigger: CACACTATGCAGCGACAATCACGGCATCAAGCCTCC...CACTGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACAGCGGGGGCCCAGGTTaGAGGAGCTGTGCAGCGAGG +
Preference number: 4 (lower is better)
Translates to: DLSGKKREVRIRAFSQADSGGPG*RSCAAR
Trigger: CCTCGCTGCACAGCTCCTTCAACCTGGGCCCCCGCT...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp AGACATTTTGAGCAGGGCCTGCCTTGTCTAAAGTCTGGGTGGACAGAGGGGACAGCTCCTGCATGCAGCTaGCCTGCACACCAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: RHFEQGLPCLKSGWTEGTAPACS*PAHQPP
Trigger: TGGAGGCTGGTGTGCAGGTCAGCTGCATGCAGGAGC...TGTCCCCTCTGTCCACCCAGACTTTAGACAAGGCAGGCCCTGCTCAAAATGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGAGGGTCTCTGGGCCCTaGAGGGTGGGGATCCAGCTC +
Preference number: 4 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKRVSGP*RVGIQL
Trigger: GAGCTGGATCCCCACCCTTCAGGGCCCAGAGACCCT...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCCCCGCAGCAGGGAGCTaGTGTTGTAAATGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVPAAGS*CCKWAG
Trigger: GCCAGCCCATTTACAACATCAGCTCCCTGCTGCGGG...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACGCTCGGCTGGCCCAGTaGGCGGCAGCTGATCCTACG +
Preference number: 4 (lower is better)
Translates to: DLSGKKREVRIRAFSQADARLAQ*AAADPT
Trigger: CGTAGGATCAGCTGCCGCTCACTGGGCCAGCCGAGC...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACAAGGTTGAAGGAGCTGTaGAGCGAGGCTTCCTCAAGG +
Preference number: 4 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTRLKEL*SEASSR
Trigger: CCTTGAGGAAGCCTCGCTGCACAGCTCCTTCAACCT...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCAGGTCAGGCTGGTACTaGACAAAGTCTGTCTGGATG +
Preference number: 4 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLRSGWY*TKSVWM
Trigger: CATCCAGACAGACTTTGTGCAGTACCAGCCTGACCT...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp CGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGGCACCTGTGGGCACTaGGCGAACACTGCCAGGCCG +
Preference number: 4 (lower is better)
Translates to: RNDLSGKKREVRIRAFSQGTCGH*ANTARP
Trigger: CGGCCTGGCAGTGTTCGCCCAGTGCCCACAGGTGCC...CTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp AAGTCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCGGCCGCTGCTCATTCTaGCTGGCGGGCACCTGTGGG +
Preference number: 4 (lower is better)
Translates to: KSFRKLSANVVRAWSQWSGRCSF*LAGTCG
Trigger: CCCACAGGTGCCCGCCAGCCAGAATGAGCAGCGGCC...GCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp TGGCTGCCTCCATTTGAGGAGGTAATACTGGTCCGGGAGCCCAAGGAGAGGGGCAGTCAGATACTGTTCTaGGGTGGGAGGCTTGATGCC +
Preference number: 4 (lower is better)
Translates to: WLPPFEEVILVREPKERGSQILF*GGRLDA
Trigger: GGCATCAAGCCTCCCACCCCAGAACAGTATCTGACT...GCCCCTCTCCTTGGGCTCCCGGACCAGTATTACCTCCTCAAATGGAGGCAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACAACTCACGGGCAGTCCTaGGTTAGAGTTGACTGCAGG +
Preference number: 4 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTTHGQS*VRVDCR
Trigger: CCTGCAGTCAACTCTAACCCAGGACTGCCCGTGAGT...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp ACTGGAGCAACAGTGAGGGCAAGCGACCTTAGCAGAGAACCAGAGAGGCTCCCACACTGTTGGCACAGCTaGCACTACCACAGCCAGCAG +
Preference number: 4 (lower is better)
Translates to: TGATVRASDLSREPERLPHCWHS*HYHSQQ
Trigger: CTGCTGGCTGTGGTAGTGCCAGCTGTGCCAACAGTG...TGGGAGCCTCTCTGGTTCTCTGCTAAGGTCGCTTGCCCTCACTGTTGCTCCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AAGTCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCGTGCTGGAGCTCGGCTaGCCCAGTGAGCGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: KSFRKLSANVVRAWSQWSVLELG*PSERQL
Trigger: CAGCTGCCGCTCACTGGGCCAGCCGAGCTCCAGCAC...GCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CAA 72 bp GATGAGCATCTAAGGGGAGCCTGGCCCAGTTCCACCTaGCTCTCAGCCCCCTTCTCCATATCTGGAACCAGC +
Preference number: 4 (lower is better)
Translates to: DEHLRGAWPSST*LSAPFSISGTS
Trigger: GCTGGTTCCAGATATGGAGAAGGGGGCTGAGAGCAAGGTGGAACTGGGCCAGGCTCCCCTTAGATGCTCATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR TCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTAAGGTGGAGCTGCGGGTaGGGGACCGTGCAGGAGACC +
Preference number: 4 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLRWSCG*GTVQET
Trigger: GGTCTCCTGCACGGTCCCTCACCCGCAGCTCCACCT...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR TCA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGGCTCCTGCATGCAGCTaGCCTGCACACCAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKAPACS*PAHQPP
Trigger: TGGAGGCTGGTGTGCAGGTCAGCTGCATGCAGGAGC...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp AGACATTTTGAGCAGGGCCTGCCTTGTCTAAAGTCTGGGTGGACAGAGGGGACAACTGAACCGCACACCTaGGCCTGGCCCACTTTCTCC +
Preference number: 4 (lower is better)
Translates to: RHFEQGLPCLKSGWTEGTTEPHT*AWPTFS
Trigger: GGAGAAAGTGGGCCAGGCTCAGGTGTGCGGTTCAGT...TGTCCCCTCTGTCCACCCAGACTTTAGACAAGGCAGGCCCTGCTCAAAATGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTCTGAGTGCCTGTCTTTaGGGACTGAACCGCACACCT +
Preference number: 4 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVLSACL*GLNRTP
Trigger: AGGTGTGCGGTTCAGTCCTCAAAGACAGGCACTCAG...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR TCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGTGTGACTACCACTGCTaGGTCAGGGTCTCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: KLKDRAITPACRVHRSSQCDYHC*VRVSGP
Trigger: GGGCCCAGAGACCCTGACTCAGCAGTGGTAGTCACA...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR TCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTGCTCGTCACCTACTGTaGCTACCACTGCTGAGTCAG +
Preference number: 4 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVARHLL*LPLLSQ
Trigger: CTGACTCAGCAGTGGTAGTCACAGTAGGTGACGAGC...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR TCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGCTCGGCTGGCCCAGTaGGCGGCAGCTGATCCTACG +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSARLAQ*AAADPT
Trigger: CGTAGGATCAGCTGCCGCTCACTGGGCCAGCCGAGC...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTAGCTCGGCTGGCCCAGTaGGCGGCAGCTGATCCTACG +
Preference number: 4 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLARLAQ*AAADPT
Trigger: CGTAGGATCAGCTGCCGCTCACTGGGCCAGCCGAGC...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR GCA 90 bp AAGTCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCGCCTCGGTGTGGGGCTaGTGTCACTGCCCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: KSFRKLSANVVRAWSQWSASVWG*CHCPCR
Trigger: CCTGCAAGGGCAGTGACAGCAGCCCCACACCGAGGC...GCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR GCA 90 bp AGACATTTTGAGCAGGGCCTGCCTTGTCTAAAGTCTGGGTGGACAGAGGGGACAATGACCTGCTTGAGCTaGCGGATCTCCTTGCGGGCC +
Preference number: 4 (lower is better)
Translates to: RHFEQGLPCLKSGWTEGTMTCLS*RISLRA
Trigger: GGCCCGCAAGGAGATCCGGCAGCTCAAGCAGGTCAT...TGTCCCCTCTGTCCACCCAGACTTTAGACAAGGCAGGCCCTGCTCAAAATGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp GGTGATCACATAGGCAGGGTTAGGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTACAGTGTCGATGACCTaGTTGAGCTGCCGGATCTCC +
Preference number: 4 (lower is better)
Translates to: GDHIGRVRVTAEAGWWPVTVSMT*LSCRIS
Trigger: GGAGATCCGGCAGCTCAAGCAGGTCATCGACACTGT...AACTGGCCACCACCCTGCTTCTGCTGTGACCCTAACCCTGCCTATGTGATCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR GCA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGGCTTCTCGTAGGTGTTaGTGGCAGGGAAGCGGGGGC +
Preference number: 4 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKASRRC*WQGSGG
Trigger: GCCCCCGCTTCCCTGCCAGCAACACCTACGAGAAGC...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp ACAGGCTCCCACCACCTGGCCATGCCCCTACTTGGGAAGCACACTCAGAGACTCAGGTCAGGCTGGTACTaGACAAAGTCTGTCTGGATG +
Preference number: 4 (lower is better)
Translates to: TGSHHLAMPLLGKHTQRLRSGWY*TKSVWM
Trigger: CATCCAGACAGACTTTGTGCAGTACCAGCCTGACCT...GAGTCTCTGAGTGTGCTTCCCAAGTAGGGGCATGGCCAGGTGGTGGGAGCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTAGGCACCTGTGGGCACTaGGCGAACACTGCCAGGCCG +
Preference number: 4 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLGTCGH*ANTARP
Trigger: CGGCCTGGCAGTGTTCGCCCAGTGCCCACAGGTGCC...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTAGTGGAGAGGTGCGCCTaGAGGCGGGGAGAAGAGGCC +
Preference number: 4 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLVERCA*RRGEEA
Trigger: GGCCTCTTCTCCCCGCCTCCAGGCGCACCTCTCCAC...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp AAGTCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCTGGAGCGCCTCGGTGTaGGGCTGCTGTCACTGCCCT +
Preference number: 4 (lower is better)
Translates to: KSFRKLSANVVRAWSQWSWSASV*GCCHCP
Trigger: AGGGCAGTGACAGCAGCCCCACACCGAGGCGCTCCA...GCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp ACTGGAGCAACAGTGAGGGCAAGCGACCTTAGCAGAGAACCAGAGAGGCTCCCATGCACAAAGTCTGTCTaGATGGCCCGCTCCTGCATG +
Preference number: 4 (lower is better)
Translates to: TGATVRASDLSREPERLPCTKSV*MARSCM
Trigger: CATGCAGGAGCGGGCCATCCAGACAGACTTTGTGCA...TGGGAGCCTCTCTGGTTCTCTGCTAAGGTCGCTTGCCCTCACTGTTGCTCCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTAGTGCTGGAGCTCGGCTaGCCCAGTGAGCGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLVLELG*PSERQL
Trigger: CAGCTGCCGCTCACTGGGCCAGCCGAGCTCCAGCAC...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGTGCTGGAGCTCGGCTaGCCCAGTGAGCGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: NDLSGKKREVRIRAFSQAVLELG*PSERQL
Trigger: CAGCTGCCGCTCACTGGGCCAGCCGAGCTCCAGCAC...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp CGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTCCTGCATGCAGCTaGCCTGCACACCAGCCTCCA +
Preference number: 4 (lower is better)
Translates to: RNDLSGKKREVRIRAFSQAPACS*PAHQPP
Trigger: TGGAGGCTGGTGTGCAGGTCAGCTGCATGCAGGAGC...CTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGCCCGCAGCAGGGAGCTaGTGTTGTAAATGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKPAAGS*CCKWAG
Trigger: GCCAGCCCATTTACAACATCAGCTCCCTGCTGCGGG...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTAGGGAGAAGAGGCCGCTaGTCATTCTGGCTGGCGGGC +
Preference number: 4 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLGRRGR*SFWLAG
Trigger: GCCCGCCAGCCAGAATGAGCAGCGGCCTCTTCTCCC...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR GCA 90 bp ACTGGAGCAACAGTGAGGGCAAGCGACCTTAGCAGAGAACCAGAGAGGCTCCCACCTTCAGGTGCCGGATaGAAACCTCCTTCTGTTGCA +
Preference number: 4 (lower is better)
Translates to: TGATVRASDLSREPERLPPSGAG*KPPSVA
Trigger: TGCAACAGAAGGAGGTTTGCATCCGGCACCTGAAGG...TGGGAGCCTCTCTGGTTCTCTGCTAAGGTCGCTTGCCCTCACTGTTGCTCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGATGACCTGCTTGAGCTaGCGGATCTCCTTGCGGGCC +
Preference number: 4 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKMTCLS*RISLRA
Trigger: GGCCCGCAAGGAGATCCGGCAGCTCAAGCAGGTCAT...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp TGGCTGCCTCCATTTGAGGAGGTAATACTGGTCCGGGAGCCCAAGGAGAGGGGCTCCACAAAGTACTTCTaGAGCCCCTTGTCCTTGTCA +
Preference number: 4 (lower is better)
Translates to: WLPPFEEVILVREPKERGSTKYF*SPLSLS
Trigger: TGACAAGGACAAGGGGCTGCAGAAGTACTTTGTGGA...GCCCCTCTCCTTGGGCTCCCGGACCAGTATTACCTCCTCAAATGGAGGCAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTAAGTGCAAGGCCACCGTaGAGCAACCCCGCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLSARPP*SNPAAG
Trigger: CCCTGCTGCGGGGTTGCTGCACGGTGGCCTTGCACT...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTTGGAGCGCCTCGGTGTaGGGCTGCTGTCACTGCCCT +
Preference number: 4 (lower is better)
Translates to: NDLSGKKREVRIRAFSQAWSASV*GCCHCP
Trigger: AGGGCAGTGACAGCAGCCCCACACCGAGGCGCTCCA...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp TGGCTGCCTCCATTTGAGGAGGTAATACTGGTCCGGGAGCCCAAGGAGAGGGGCCTCCTTCTGTTGCAGTaGAGTCAGATACTGTTCTGG +
Preference number: 4 (lower is better)
Translates to: WLPPFEEVILVREPKERGLLLLQ*SQILFW
Trigger: CCAGAACAGTATCTGACTCCACTGCAACAGAAGGAG...GCCCCTCTCCTTGGGCTCCCGGACCAGTATTACCTCCTCAAATGGAGGCAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AGACATTTTGAGCAGGGCCTGCCTTGTCTAAAGTCTGGGTGGACAGAGGGGACATTGGCGACTCCATTCTaGGCCACCTCCATGCTGTGC +
Preference number: 4 (lower is better)
Translates to: RHFEQGLPCLKSGWTEGTLATPF*ATSMLC
Trigger: GCACAGCATGGAGGTGGCCCAGAATGGAGTCGCCAA...TGTCCCCTCTGTCCACCCAGACTTTAGACAAGGCAGGCCCTGCTCAAAATGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCCTGTTCCTTCCTCCTTaGCGACTCCATTCTGGGCCA +
Preference number: 4 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVLFLPP*RLHSGP
Trigger: TGGCCCAGAATGGAGTCGCCAAGGAGGAAGGAACAG...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACGTTGGAGGGATCCCCTaGCTGGCGGTCACCACAGAC +
Preference number: 4 (lower is better)
Translates to: DLSGKKREVRIRAFSQADVGGIP*LAVTTD
Trigger: GTCTGTGGTGACCGCCAGCCAGGGGATCCCTCCAAC...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGCAAAGTCTGTCTGGATaGCCCGCTCCTGCATGCAGC +
Preference number: 4 (lower is better)
Translates to: KLKDRAITPACRVHRSSQQSLSG*PAPACS
Trigger: GCTGCATGCAGGAGCGGGCCATCCAGACAGACTTTG...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp AAGTCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGCCCTGAAGGGTaGGGATCCAGCTCTGAGTGC +
Preference number: 4 (lower is better)
Translates to: KSFRKLSANVVRAWSQWSLGPEG*GSSSEC
Trigger: GCACTCAGAGCTGGATCCCCACCCTTCAGGGCCCAG...GCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACCTGGGCCCTGAAGGGTaGGGATCCAGCTCTGAGTGC +
Preference number: 4 (lower is better)
Translates to: DLSGKKREVRIRAFSQADLGPEG*GSSSEC
Trigger: GCACTCAGAGCTGGATCCCCACCCTTCAGGGCCCAG...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAAGGCCGGTGTGTGGCTaGCCCACAGGTGATGGGCTC +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSRPVCG*PTGDGL
Trigger: GAGCCCATCACCTGTGGGCCAGCCACACACCGGCCT...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTAGGCCGGTGTGTGGCTaGCCCACAGGTGATGGGCTC +
Preference number: 4 (lower is better)
Translates to: NDLSGKKREVRIRAFSQARPVCG*PTGDGL
Trigger: GAGCCCATCACCTGTGGGCCAGCCACACACCGGCCT...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCACTCACGGGCAGTCCTaGGTTAGAGTTGACTGCAGG +
Preference number: 4 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVTHGQS*VRVDCR
Trigger: CCTGCAGTCAACTCTAACCCAGGACTGCCCGTGAGT...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGGTTCCTTTTCGGTGGTaGTGGCAGCGGCTGCCTCCT +
Preference number: 4 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKVPFRW*WQRLPP
Trigger: AGGAGGCAGCCGCTGCCACCACCACCGAAAAGGAAC...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CAA 72 bp GGGTCACAGCAGAAGCAGGGTGGTGGCCAGTTCCACTaGATGCCTCTACAAACCTGGACCCTTTTCAATGGC +
Preference number: 4 (lower is better)
Translates to: GSQQKQGGGQFH*MPLQTWTLFNG
Trigger: GCCATTGAAAAGGGTCCAGGTTTGTAGAGGCATCAAGTGGAACTGGCCACCACCCTGCTTCTGCTGTGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR CAA 72 bp GTAGAAGGTAGTTCCTGGGGACACTTCCTCAAGACCTaGTGTGCTCTGACTGGAGGCAGGGGAAAGGAGCAC +
Preference number: 4 (lower is better)
Translates to: VEGSSWGHFLKT*CALTGGRGKEH
Trigger: GTGCTCCTTTCCCCTGCCTCCAGTCAGAGCACACAAGGTCTTGAGGAAGTGTCCCCAGGAACTACCTTCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR TCA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTCTTGTTCTGGATATTaGTGTCCACAAAGTACTTCT +
Preference number: 4 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSSCSGY*CPQSTS
Trigger: AGAAGTACTTTGTGGACATCAATATCCAGAACAAGA...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACAGGAGACCCACCTGCTaGCTCCCCTGTTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: DLSGKKREVRIRAFSQADRRPTC*LPCSFL
Trigger: GAGGAAGGAACAGGGGAGTCAGCAGGTGGGTCTCCT...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp AAGTCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCACTGAACCGCACACCTaGGCCTGGCCCACTTTCTCC +
Preference number: 4 (lower is better)
Translates to: KSFRKLSANVVRAWSQWSTEPHT*AWPTFS
Trigger: GGAGAAAGTGGGCCAGGCTCAGGTGTGCGGTTCAGT...GCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACACTGAACCGCACACCTaGGCCTGGCCCACTTTCTCC +
Preference number: 4 (lower is better)
Translates to: DLSGKKREVRIRAFSQADTEPHT*AWPTFS
Trigger: GGAGAAAGTGGGCCAGGCTCAGGTGTGCGGTTCAGT...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGAGGTTGAAGGAGCTGTaGAGCGAGGCTTCCTCAAGG +
Preference number: 4 (lower is better)
Translates to: KLKDRAITPACRVHRSSQRLKEL*SEASSR
Trigger: CCTTGAGGAAGCCTCGCTGCACAGCTCCTTCAACCT...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp AAGTCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTCACTCAGCTTaGTGTAGGTGGAGCTGCGGG +
Preference number: 4 (lower is better)
Translates to: KSFRKLSANVVRAWSQWSLGHSA*CRWSCG
Trigger: CCCGCAGCTCCACCTACACCAAGCTGAGTGACCCAG...GCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGTTGGAGGGATCCCCTaGCTGGCGGTCACCACAGAC +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSVGGIP*LAVTTD
Trigger: GTCTGTGGTGACCGCCAGCCAGGGGATCCCTCCAAC...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCATCTCGTAGGTGTTGCTaGCAGGGAAGCGGGGGCCCA +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSSRRCC*QGSGGP
Trigger: TGGGCCCCCGCTTCCCTGCCAGCAACACCTACGAGA...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACGAGCCAGGCCACTGTTaGCACAGCTGGCACTACCAC +
Preference number: 4 (lower is better)
Translates to: DLSGKKREVRIRAFSQADEPGHC*HSWHYH
Trigger: GTGGTAGTGCCAGCTGTGCCAACAGTGGCCTGGCTC...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AAGTCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCGAGCCAGGCCACTGTTaGCACAGCTGGCACTACCAC +
Preference number: 4 (lower is better)
Translates to: KSFRKLSANVVRAWSQWSEPGHC*HSWHYH
Trigger: GTGGTAGTGCCAGCTGTGCCAACAGTGGCCTGGCTC...GCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCACCGCACACTCACAGGTaGAGAGGTGCGCCTGCGAGA +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSPHTHR*RGAPAR
Trigger: TCTCGCAGGCGCACCTCTCCACCTGTGAGTGTGCGG...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094456.10
3UTR CAA 72 bp TCTCAGAAGGTGAAGGGTGCCCTAGAGCTGCTAGCCTaGCCTTCTCTGTGCTGGCAGATTTGCCCAAAGGAA +
Preference number: 4 (lower is better)
Translates to: SQKVKGALELLA*PSLCWQICPKE
Trigger: TTCCTTTGGGCAAATCTGCCAGCACAGAGAAGGCAAGGCTAGCAGCTCTAGGGCACCCTTCACCTTCTGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CAA 72 bp CATTGTCACCTAGATCAGAGGAGGGCTGTGAGTTCCTaGGGTGGAGACCCCTCAGTAGCCTTTGGCCCTAAA +
Preference number: 4 (lower is better)
Translates to: HCHLDQRRAVSS*GGDPSVAFGPK
Trigger: TTTAGGGCCAAAGGCTACTGAGGGGTCTCCACCCAAGGAACTCACAGCCCTCCTCTGATCTAGGTGACAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR TCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCACCCGCAGCAGGGAGCTaGTGTTGTAAATGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSPAAGS*CCKWAG
Trigger: GCCAGCCCATTTACAACATCAGCTCCCTGCTGCGGG...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCACCAGTGAGCGGCAGCTaGTCCTACGGATGGAGTGCA +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSPVSGS*SYGWSA
Trigger: TGCACTCCATCCGTAGGATCAGCTGCCGCTCACTGG...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACTCTGGGCCACCTCCATaGTGTGCAGCAAGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: DLSGKKREVRIRAFSQADSGPPP*CAARSP
Trigger: TGGAGACCTTGCTGCACAGCATGGAGGTGGCCCAGA...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTATCCGTGTCCCTATCCTaGAGCCGGTCCTGTGTGTCC +
Preference number: 4 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLSVSLS*SRSCVS
Trigger: GGACACACAGGACCGGCTCCAGGATAGGGACACGGA...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCATCCGTGTCCCTATCCTaGAGCCGGTCCTGTGTGTCC +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSSVSLS*SRSCVS
Trigger: GGACACACAGGACCGGCTCCAGGATAGGGACACGGA...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp CGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGTTGGCGACTCCATTCTaGGCCACCTCCATGCTGTGC +
Preference number: 4 (lower is better)
Translates to: RNDLSGKKREVRIRAFSQLATPF*ATSMLC
Trigger: GCACAGCATGGAGGTGGCCCAGAATGGAGTCGCCAA...CTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTACTGAGTCAGGGTCTCTaGGCCCTGAAGGGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLLSQGL*ALKGGD
Trigger: ATCCCCACCCTTCAGGGCCCAGAGACCCTGACTCAG...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTCTGAGTCAGGGTCTCTaGGCCCTGAAGGGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: NDLSGKKREVRIRAFSQALSQGL*ALKGGD
Trigger: ATCCCCACCCTTCAGGGCCCAGAGACCCTGACTCAG...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGACTCACGGGCAGTCCTaGGTTAGAGTTGACTGCAGG +
Preference number: 4 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKTHGQS*VRVDCR
Trigger: CCTGCAGTCAACTCTAACCCAGGACTGCCCGTGAGT...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CAA 72 bp CCCTCAGTAGCCTTTGGCCCTAAAGCCTGGGATTTGTaGTCCTGTGCCTGTATAGGTGAAGAGGAGTCTCAG +
Preference number: 4 (lower is better)
Translates to: PSVAFGPKAWDL*SCACIGEEESQ
Trigger: CTGAGACTCCTCTTCACCTATACAGGCACAGGACAACAAATCCCAGGCTTTAGGGCCAAAGGCTACTGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
3UTR CAA 72 bp GACCCCTCAGTAGCCTTTGGCCCTAAAGCCTGGGATTaGTTGTCCTGTGCCTGTATAGGTGAAGAGGAGTCT +
Preference number: 4 (lower is better)
Translates to: DPSVAFGPKAWD*LSCACIGEEES
Trigger: AGACTCCTCTTCACCTATACAGGCACAGGACAACAAATCCCAGGCTTTAGGGCCAAAGGCTACTGAGGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR TCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTAGCGGGGGCCCAGGTTaGAGGAGCTGTGCAGCGAGG +
Preference number: 4 (lower is better)
Translates to: SSYIYFLSRASTVARETCSGGPG*RSCAAR
Trigger: CCTCGCTGCACAGCTCCTTCAACCTGGGCCCCCGCT...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCATGCTGTCACTGCCCTTaGAGGAGCCAGAGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSCCHCP*RSQSCC
Trigger: GCAGCAACTCTGGCTCCTGCAAGGGCAGTGACAGCA...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR GCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTTGCTGTCACTGCCCTTaGAGGAGCCAGAGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: NDLSGKKREVRIRAFSQACCHCP*RSQSCC
Trigger: GCAGCAACTCTGGCTCCTGCAAGGGCAGTGACAGCA...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR GCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTATTTCAGGGCCAGCTGTaGTTCTACGCGGTGGCACTC +
Preference number: 4 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLFQGQL*FYAVAL
Trigger: GAGTGCCACCGCGTAGAAGCACAGCTGGCCCTGAAA...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR GCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCTCCACAAAGTACTTCTaGAGCCCCTTGTCCTTGTCA +
Preference number: 4 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVSTKYF*SPLSLS
Trigger: TGACAAGGACAAGGGGCTGCAGAAGTACTTTGTGGA...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTTTGGCGACTCCATTCTaGGCCACCTCCATGCTGTGC +
Preference number: 4 (lower is better)
Translates to: NDLSGKKREVRIRAFSQALATPF*ATSMLC
Trigger: GCACAGCATGGAGGTGGCCCAGAATGGAGTCGCCAA...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACCTGTTCCTTCCTCCTTaGCGACTCCATTCTGGGCCA +
Preference number: 4 (lower is better)
Translates to: DLSGKKREVRIRAFSQADLFLPP*RLHSGP
Trigger: TGGCCCAGAATGGAGTCGCCAAGGAGGAAGGAACAG...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp CGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGTCACCACAGACGGCTaGGTCACTCAGCTTGGTGTA +
Preference number: 4 (lower is better)
Translates to: RNDLSGKKREVRIRAFSQVTTDG*VTQLGV
Trigger: TACACCAAGCTGAGTGACCCAGCCGTCTGTGGTGAC...CTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGAGGCTTGATGCCGTaGTTGTCGCTGCATAGTGTG +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSGGLMP*LSLHSV
Trigger: CACACTATGCAGCGACAATCACGGCATCAAGCCTCC...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTCTGAGTGCCTGTCTTTaGGGACTGAACCGCACACCT +
Preference number: 4 (lower is better)
Translates to: NDLSGKKREVRIRAFSQALSACL*GLNRTP
Trigger: AGGTGTGCGGTTCAGTCCTCAAAGACAGGCACTCAG...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCCAAACCTCCTTCTGTTaGAGTGGAGTCAGATACTGT +
Preference number: 4 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVQTSFC*SGVRYC
Trigger: ACAGTATCTGACTCCACTGCAACAGAAGGAGGTTTG...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACCCTTCAGGTGCCGGATaGAAACCTCCTTCTGTTGCA +
Preference number: 4 (lower is better)
Translates to: DLSGKKREVRIRAFSQADPSGAG*KPPSVA
Trigger: TGCAACAGAAGGAGGTTTGCATCCGGCACCTGAAGG...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAACAGTGTCGATGACCTaGTTGAGCTGCCGGATCTCC +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSTVSMT*LSCRIS
Trigger: GGAGATCCGGCAGCTCAAGCAGGTCATCGACACTGT...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGCTCCTTCTGTTGCAGTaGAGTCAGATACTGTTCTGG +
Preference number: 4 (lower is better)
Translates to: KLKDRAITPACRVHRSSQLLLLQ*SQILFW
Trigger: CCAGAACAGTATCTGACTCCACTGCAACAGAAGGAG...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGTCACCACAGACGGCTaGGTCACTCAGCTTGGTGTA +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSVTTDG*VTQLGV
Trigger: TACACCAAGCTGAGTGACCCAGCCGTCTGTGGTGAC...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCACCTTCAGGTGCCGGATaGAAACCTCCTTCTGTTGCA +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSPSGAG*KPPSVA
Trigger: TGCAACAGAAGGAGGTTTGCATCCGGCACCTGAAGG...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp CGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGAGGTCAGGCTGGTACTaGACAAAGTCTGTCTGGATG +
Preference number: 4 (lower is better)
Translates to: RNDLSGKKREVRIRAFSQRSGWY*TKSVWM
Trigger: CATCCAGACAGACTTTGTGCAGTACCAGCCTGACCT...CTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTTCACAGGTGGAGAGGTaGGCCTGCGAGATCCGGCAG +
Preference number: 4 (lower is better)
Translates to: SSYIYFLSRASTVARETCSQVER*ACEIRQ
Trigger: CTGCCGGATCTCGCAGGCGCACCTCTCCACCTGTGA...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094456.10
CDS-3UTR GCA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGCAAACCTCCTTCTGTTaGAGTGGAGTCAGATACTGT +
Preference number: 4 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKQTSFC*SGVRYC
Trigger: ACAGTATCTGACTCCACTGCAACAGAAGGAGGTTTG...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTAGGTCAGGCTGGTACTaGACAAAGTCTGTCTGGATG +
Preference number: 4 (lower is better)
Translates to: NDLSGKKREVRIRAFSQARSGWY*TKSVWM
Trigger: CATCCAGACAGACTTTGTGCAGTACCAGCCTGACCT...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTCTGAGTCAGGGTCTCTaGGCCCTGAAGGGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: SSYIYFLSRASTVARETCLSQGL*ALKGGD
Trigger: ATCCCCACCCTTCAGGGCCCAGAGACCCTGACTCAG...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTACAGGTGATGGGCTCTaGGGCCTCAAGCTCGTCACC +
Preference number: 4 (lower is better)
Translates to: SSYIYFLSRASTVARETCTGDGL*GLKLVT
Trigger: GGTGACGAGCTTGAGGCCCCAGAGCCCATCACCTGT...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCACTCCTTCTGTTGCAGTaGAGTCAGATACTGTTCTGG +
Preference number: 4 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSLLLLQ*SQILFW
Trigger: CCAGAACAGTATCTGACTCCACTGCAACAGAAGGAG...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTCAAAGTCTGTCTGGATaGCCCGCTCCTGCATGCAGC +
Preference number: 4 (lower is better)
Translates to: SSYIYFLSRASTVARETCQSLSG*PAPACS
Trigger: GCTGCATGCAGGAGCGGGCCATCCAGACAGACTTTG...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTCACTGTTGGCACAGCTaGCACTACCACAGCCAGCAG +
Preference number: 4 (lower is better)
Translates to: SSYIYFLSRASTVARETCHCWHS*HYHSQQ
Trigger: CTGCTGGCTGTGGTAGTGCCAGCTGTGCCAACAGTG...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp AGACATTTTGAGCAGGGCCTGCCTTGTCTAAAGTCTGGGTGGACAGAGGGGACATCTTGTTCTGGATATTaGTGTCCACAAAGTACTTCT +
Preference number: 4 (lower is better)
Translates to: RHFEQGLPCLKSGWTEGTSCSGY*CPQSTS
Trigger: AGAAGTACTTTGTGGACATCAATATCCAGAACAAGA...TGTCCCCTCTGTCCACCCAGACTTTAGACAAGGCAGGCCCTGCTCAAAATGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR GCA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTACAAACCTCCTTCTGTTaGAGTGGAGTCAGATACTGT +
Preference number: 4 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLQTSFC*SGVRYC
Trigger: ACAGTATCTGACTCCACTGCAACAGAAGGAGGTTTG...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CCA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTCTGTTCCTTCCTCCTTaGCGACTCCATTCTGGGCCA +
Preference number: 4 (lower is better)
Translates to: SSYIYFLSRASTVARETCLFLPP*RLHSGP
Trigger: TGGCCCAGAATGGAGTCGCCAAGGAGGAAGGAACAG...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
3UTR CAA 72 bp GTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTaGCTAGGGAGACATGTGGAGCTCCACGAGTACACG +
Preference number: 4 (lower is better)
Translates to: VHTFIFSAELRL*LGRHVELHEYT
Trigger: CGTGTACTCGTGGAGCTCCACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp CGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGTCTTGTTCTGGATATTaGTGTCCACAAAGTACTTCT +
Preference number: 4 (lower is better)
Translates to: RNDLSGKKREVRIRAFSQSCSGY*CPQSTS
Trigger: AGAAGTACTTTGTGGACATCAATATCCAGAACAAGA...CTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR TCA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTTCTTGTTCTGGATATTaGTGTCCACAAAGTACTTCT +
Preference number: 4 (lower is better)
Translates to: NDLSGKKREVRIRAFSQASCSGY*CPQSTS
Trigger: AGAAGTACTTTGTGGACATCAATATCCAGAACAAGA...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 90 bp GGAGAGGTGCGCCTGGAGGCGGGGAGAAGAGGCCGCTGCTCATTCTaGCTGGCGGGCACCTGTGGGCACTGGGCGAACACTGCCAGGCCG +
Preference number: 5 (lower is better)
Translates to: GEVRLEAGRRGRCSF*LAGTCGHWANTARP
Trigger: CGGCCTGGCAGTGTTCGCCCAGTGCCCACAGGTGCCCGCCAGCCAGAATGAGCAGCGGCCTCTTCTCCCCGCCTCCAGGCGCACCTCTCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS CCA 90 bp AGGTGCGCCTGGAGGCGGGGAGAAGAGGCCGCTGCTCATTCTGGCTaGCGGGCACCTGTGGGCACTGGGCGAACACTGCCAGGCCGCTAC +
Preference number: 5 (lower is better)
Translates to: RCAWRRGEEAAAHSG*RAPVGTGRTLPGRY
Trigger: GTAGCGGCCTGGCAGTGTTCGCCCAGTGCCCACAGGTGCCCGCCAGCCAGAATGAGCAGCGGCCTCTTCTCCCCGCCTCCAGGCGCACCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS CCA 90 bp AGGTGCCGTAGGCGTCCCGCACACTCACAGGTGGAGAGGTGCGCCTaGAGGCGGGGAGAAGAGGCCGCTGCTCATTCTGGCTGGCGGGCA +
Preference number: 5 (lower is better)
Translates to: RCRRRPAHSQVERCA*RRGEEAAAHSGWRA
Trigger: TGCCCGCCAGCCAGAATGAGCAGCGGCCTCTTCTCCCCGCCTCCAGGCGCACCTCTCCACCTGTGAGTGTGCGGGACGCCTACGGCACCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS-3UTR CAA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGCGGTCCTGTGTGTCCTaGAGCCGGGCCTTCAGGTGC +
Preference number: 5 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLARSCVS*SRAFRC
Trigger: GCACCTGAAGGCCCGGCTCAAGGACACACAGGACCG...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS GCA 90 bp GGGAAGAGGTGCCGTAGGCGTCCCGCACACTCACAGGTGGAGAGGTaGGCCTGGAGGCGGGGAGAAGAGGCCGCTGCTCATTCTGGCTGG +
Preference number: 5 (lower is better)
Translates to: GKRCRRRPAHSQVER*AWRRGEEAAAHSGW
Trigger: CCAGCCAGAATGAGCAGCGGCCTCTTCTCCCCGCCTCCAGGCGCACCTCTCCACCTGTGAGTGTGCGGGACGCCTACGGCACCTCTTCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS CCA 90 bp GCTGCTGAGGGAAGAGGTGCCGTAGGCGTCCCGCACACTCACAGGTaGAGAGGTGCGCCTGGAGGCGGGGAGAAGAGGCCGCTGCTCATT +
Preference number: 5 (lower is better)
Translates to: AAEGRGAVGVPHTHR*RGAPGGGEKRPLLI
Trigger: AATGAGCAGCGGCCTCTTCTCCCCGCCTCCAGGCGCACCTCTCCACCTGTGAGTGTGCGGGACGCCTACGGCACCTCTTCCCTCAGCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS CCA 90 bp GGGCTGGCCCTGACGCCGCTGGGAGCGGCAGAGCCAGGCCACTGTTaGCACAGCTGGCACTACCACAGCCAGCAGATCCACGATGTAGTG +
Preference number: 5 (lower is better)
Translates to: GLALTPLGAAEPGHC*HSWHYHSQQIHDVV
Trigger: CACTACATCGTGGATCTGCTGGCTGTGGTAGTGCCAGCTGTGCCAACAGTGGCCTGGCTCTGCCGCTCCCAGCGGCGTCAGGGCCAGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS TCA 90 bp GGATGGAGTGCAAGGCCACCGTGCAGCAACCCCGCAGCAGGGAGCTaGTGTTGTAAATGGGCTGGCCCTGACGCCGCTGGGAGCGGCAGA +
Preference number: 5 (lower is better)
Translates to: GWSARPPCSNPAAGS*CCKWAGPDAAGSGR
Trigger: TCTGCCGCTCCCAGCGGCGTCAGGGCCAGCCCATTTACAACATCAGCTCCCTGCTGCGGGGTTGCTGCACGGTGGCCTTGCACTCCATCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS GCA 90 bp GAGCTCGGCTGGCCCAGTGAGCGGCAGCTGATCCTACGGATGGAGTaGAAGGCCACCGTGCAGCAACCCCGCAGCAGGGAGCTGATGTTG +
Preference number: 5 (lower is better)
Translates to: ELGWPSERQLILRME*KATVQQPRSRELML
Trigger: CAACATCAGCTCCCTGCTGCGGGGTTGCTGCACGGTGGCCTTGCACTCCATCCGTAGGATCAGCTGCCGCTCACTGGGCCAGCCGAGCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 90 bp CTGACGCCGCTGGGAGCGGCAGAGCCAGGCCACTGTTGGCACAGCTaGCACTACCACAGCCAGCAGATCCACGATGTAGTGGCGGCTCCA +
Preference number: 5 (lower is better)
Translates to: LTPLGAAEPGHCWHS*HYHSQQIHDVVAAP
Trigger: TGGAGCCGCCACTACATCGTGGATCTGCTGGCTGTGGTAGTGCCAGCTGTGCCAACAGTGGCCTGGCTCTGCCGCTCCCAGCGGCGTCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp ACATGTGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCAGAGCCAGGCCACTGTaGGCACAGCTGGCACTACCA +
Preference number: 5 (lower is better)
Translates to: TCGAPRVHGAGGWVRGQSRARPL*AQLALP
Trigger: TGGTAGTGCCAGCTGTGCCAACAGTGGCCTGGCTCT...GGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCACATGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 90 bp CGGCAGCCACATATCCACTATCAGCTCCATCCTCGGCAGAGGTGTTaGAGGGATCCCCTGGCTGGCGGTCACCACAGACGGCTGGGTCAC +
Preference number: 5 (lower is better)
Translates to: RQPHIHYQLHPRQRC*RDPLAGGHHRRLGH
Trigger: GTGACCCAGCCGTCTGTGGTGACCGCCAGCCAGGGGATCCCTCCAACACCTCTGCCGAGGATGGAGCTGATAGTGGATATGTGGCTGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS GCA 90 bp AGGTCAGGCTGGTACTGCACAAAGTCTGTCTGGATGGCCCGCTCCTaGATGCAGCTGACCTGCACACCAGCCTCCATGCCGCACAGCAGC +
Preference number: 5 (lower is better)
Translates to: RSGWYCTKSVWMARS*MQLTCTPASMPHSS
Trigger: GCTGCTGTGCGGCATGGAGGCTGGTGTGCAGGTCAGCTGCATGCAGGAGCGGGCCATCCAGACAGACTTTGTGCAGTACCAGCCTGACCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 90 bp AGGCTTCCTCAAGGCCACAGTCCACTCCTGATGACAGTAGGCTACTaGCCTCCAGGGCGTCCGTCCGACTCAGGGTGTCATCGGCAGCCA +
Preference number: 5 (lower is better)
Translates to: RLPQGHSPLLMTVGY*PPGRPSDSGCHRQP
Trigger: TGGCTGCCGATGACACCCTGAGTCGGACGGACGCCCTGGAGGCCAGTAGCCTACTGTCATCAGGAGTGGACTGTGGCCTTGAGGAAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp GCTGGACCATACTTTTGCATCCCAGGGCAAGGGAGGAGAGCTGGAGCCTCAGTGCGGTCCTGTGTGTCCTaGAGCCGGGCCTTCAGGTGC +
Preference number: 5 (lower is better)
Translates to: AGPYFCIPGQGRRAGASVRSCVS*SRAFRC
Trigger: GCACCTGAAGGCCCGGCTCAAGGACACACAGGACCG...CACTGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp GGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTTACTTCTGCAGCCCCTaGTCCTTGTCAATCAGGTTG +
Preference number: 5 (lower is better)
Translates to: GAPRVHGAGGWVRGQSWRYFCSP*SLSIRL
Trigger: CAACCTGATTGACAAGGACAAGGGGCTGCAGAAGTA...ACGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp TACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGGGCTGGGTAATGGGCTGCTCAGAGCCAGGCCACTGTaGGCACAGCTGGCACTACCA +
Preference number: 5 (lower is better)
Translates to: YPSLQGSQVIPGLGNGLLRARPL*AQLALP
Trigger: TGGTAGTGCCAGCTGTGCCAACAGTGGCCTGGCTCT...GAGCAGCCCATTACCCAGCCCTGGGATGACCTGTGAACCCTGCAGGCTGGGGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS TCA 90 bp GGTACTGCACAAAGTCTGTCTGGATGGCCCGCTCCTGCATGCAGCTaGCCTGCACACCAGCCTCCATGCCGCACAGCAGCTTCTCGTAGG +
Preference number: 5 (lower is better)
Translates to: GTAQSLSGWPAPACS*PAHQPPCRTAASRR
Trigger: CCTACGAGAAGCTGCTGTGCGGCATGGAGGCTGGTGTGCAGGTCAGCTGCATGCAGGAGCGGGCCATCCAGACAGACTTTGTGCAGTACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS TCA 90 bp CTCTGGGCCCTGAAGGGTGGGGATCCAGCTCTGAGTGCCTGTCTTTaGGGACTGAACCGCACACCTGAGCCTGGCCCACTTTCTCCAGGA +
Preference number: 5 (lower is better)
Translates to: LWALKGGDPALSACL*GLNRTPEPGPLSPG
Trigger: TCCTGGAGAAAGTGGGCCAGGCTCAGGTGTGCGGTTCAGTCCTCAAAGACAGGCACTCAGAGCTGGATCCCCACCCTTCAGGGCCCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 90 bp TCCACTATCAGCTCCATCCTCGGCAGAGGTGTTGGAGGGATCCCCTaGCTGGCGGTCACCACAGACGGCTGGGTCACTCAGCTTGGTGTA +
Preference number: 5 (lower is better)
Translates to: STISSILGRGVGGIP*LAVTTDGWVTQLGV
Trigger: TACACCAAGCTGAGTGACCCAGCCGTCTGTGGTGACCGCCAGCCAGGGGATCCCTCCAACACCTCTGCCGAGGATGGAGCTGATAGTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 90 bp CCACAGCCAGCAGATCCACGATGTAGTGGCGGCTCCAGTAACTCTTaGGTTCCTTTTCGGTGGTGGTGGCAGCGGCTGCCTCCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: PQPADPRCSGGSSNS*VPFRWWWQRLPPPP
Trigger: AGGAGGAGGAGGCAGCCGCTGCCACCACCACCGAAAAGGAACCCAAGAGTTACTGGAGCCGCCACTACATCGTGGATCTGCTGGCTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp TGGAGCTCCACGAGTACACGGCGCAGGAGGCTGGGTCCGTGGCCAGTCCTGGCGTCAATCAGGTTGTTCTaGACAGTGTCGATGACCTGC +
Preference number: 5 (lower is better)
Translates to: WSSTSTRRRRLGPWPVLASIRLF*TVSMTC
Trigger: GCAGGTCATCGACACTGTCAAGAACAACCTGATTGA...CGCCAGGACTGGCCACGGACCCAGCCTCCTGCGCCGTGTACTCGTGGAGCTCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGTGCAGCCCCTTGTCCTaGTCAATCAGGTTGTTCTTG +
Preference number: 5 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWCSPLS*SIRLFL
Trigger: CAAGAACAACCTGATTGACAAGGACAAGGGGCTGCA...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS GCA 90 bp GCCTGGCCCACTTTCTCCAGGATGGTGTTCAGGTCAGGCTGGTACTaGACAAAGTCTGTCTGGATGGCCCGCTCCTGCATGCAGCTGACC +
Preference number: 5 (lower is better)
Translates to: AWPTFSRMVFRSGWY*TKSVWMARSCMQLT
Trigger: GGTCAGCTGCATGCAGGAGCGGGCCATCCAGACAGACTTTGTGCAGTACCAGCCTGACCTGAACACCATCCTGGAGAAAGTGGGCCAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 90 bp TCCAGGATGGTGTTCAGGTCAGGCTGGTACTGCACAAAGTCTGTCTaGATGGCCCGCTCCTGCATGCAGCTGACCTGCACACCAGCCTCC +
Preference number: 5 (lower is better)
Translates to: SRMVFRSGWYCTKSV*MARSCMQLTCTPAS
Trigger: GGAGGCTGGTGTGCAGGTCAGCTGCATGCAGGAGCGGGCCATCCAGACAGACTTTGTGCAGTACCAGCCTGACCTGAACACCATCCTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp GCCCTGATGGCTAGGCTGGCTGCCCACTCCCAGTGCATGCAGGTGCCCCTCTGGTCAATCAGGTTGTTCTaGACAGTGTCGATGACCTGC +
Preference number: 5 (lower is better)
Translates to: ALMARLAAHSQCMQVPLWSIRLF*TVSMTC
Trigger: GCAGGTCATCGACACTGTCAAGAACAACCTGATTGA...CCAGAGGGGCACCTGCATGCACTGGGAGTGGGCAGCCAGCCTAGCCATCAGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS GCA 90 bp TCCTTGAGCCGGGCCTTCAGGTGCCGGATGCAAACCTCCTTCTGTTaGAGTGGAGTCAGATACTGTTCTGGGGTGGGAGGCTTGATGCCG +
Preference number: 5 (lower is better)
Translates to: SLSRAFRCRMQTSFC*SGVRYCSGVGGLMP
Trigger: CGGCATCAAGCCTCCCACCCCAGAACAGTATCTGACTCCACTGCAACAGAAGGAGGTTTGCATCCGGCACCTGAAGGCCCGGCTCAAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 90 bp ACTGTGACTACCACTGCTGAGTCAGGGTCTCTGGGCCCTGAAGGGTaGGGATCCAGCTCTGAGTGCCTGTCTTTGAGGACTGAACCGCAC +
Preference number: 5 (lower is better)
Translates to: TVTTTAESGSLGPEG*GSSSECLSLRTEPH
Trigger: GTGCGGTTCAGTCCTCAAAGACAGGCACTCAGAGCTGGATCCCCACCCTTCAGGGCCCAGAGACCCTGACTCAGCAGTGGTAGTCACAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp GAGGCACAAAGCGCATGGCAGAGGGCTCTTGCCCTGATGGCTAGGCTGGCTGCCTACTTCTGCAGCCCCTaGTCCTTGTCAATCAGGTTG +
Preference number: 5 (lower is better)
Translates to: EAQSAWQRALALMARLAAYFCSP*SLSIRL
Trigger: CAACCTGATTGACAAGGACAAGGGGCTGCAGAAGTA...GGCAGCCAGCCTAGCCATCAGGGCAAGAGCCCTCTGCCATGCGCTTTGTGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 90 bp GAGCCGGGCCTTCAGGTGCCGGATGCAAACCTCCTTCTGTTGCAGTaGAGTCAGATACTGTTCTGGGGTGGGAGGCTTGATGCCGTGATT +
Preference number: 5 (lower is better)
Translates to: EPGLQVPDANLLLLQ*SQILFWGGRLDAVI
Trigger: AATCACGGCATCAAGCCTCCCACCCCAGAACAGTATCTGACTCCACTGCAACAGAAGGAGGTTTGCATCCGGCACCTGAAGGCCCGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp GCATTTGGGTTTGGTTCAGCTGGGGTAGGGATGTTCCACCAAGGATGGCTGGTCCCTGTTCCTTCCTCCTaGGCGACTCCATTCTGGGCC +
Preference number: 5 (lower is better)
Translates to: AFGFGSAGVGMFHQGWLVPVPSS*ATPFWA
Trigger: GGCCCAGAATGGAGTCGCCAAGGAGGAAGGAACAGG...GACCAGCCATCCTTGGTGGAACATCCCTACCCCAGCTGAACCAAACCCAAATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp GCTGGACCATACTTTTGCATCCCAGGGCAAGGGAGGAGAGCTGGAGCCTCAGTGTCTGAGTGCCTGTCTTaGAGGACTGAACCGCACACC +
Preference number: 5 (lower is better)
Translates to: AGPYFCIPGQGRRAGASVSECLS*RTEPHT
Trigger: GGTGTGCGGTTCAGTCCTCAAAGACAGGCACTCAGA...CACTGAGGCTCCAGCTCTCCTCCCTTGCCCTGGGATGCAAAAGTATGGTCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS GCA 90 bp CCCTTGTCCTTGTCAATCAGGTTGTTCTTGACAGTGTCGATGACCTaGTTGAGCTGCCGGATCTCCTTGCGGGCCTCTTTCAGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: PLSLSIRLFLTVSMT*LSCRISLRASFRAS
Trigger: GCTGGCCCTGAAAGAGGCCCGCAAGGAGATCCGGCAGCTCAAGCAGGTCATCGACACTGTCAAGAACAACCTGATTGACAAGGACAAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp AAGTCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCGGTCCTGTGTGTCCTaGAGCCGGGCCTTCAGGTGC +
Preference number: 5 (lower is better)
Translates to: KSFRKLSANVVRAWSQWSRSCVS*SRAFRC
Trigger: GCACCTGAAGGCCCGGCTCAAGGACACACAGGACCG...GCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp AGACATTTTGAGCAGGGCCTGCCTTGTCTAAAGTCTGGGTGGACAGAGGGGACAAGAGCCAGGCCACTGTaGGCACAGCTGGCACTACCA +
Preference number: 5 (lower is better)
Translates to: RHFEQGLPCLKSGWTEGTRARPL*AQLALP
Trigger: TGGTAGTGCCAGCTGTGCCAACAGTGGCCTGGCTCT...TGTCCCCTCTGTCCACCCAGACTTTAGACAAGGCAGGCCCTGCTCAAAATGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp CCAGCCAAGGTGGGGGAGTTTTGGAGGCACAAAGCGCATGGCAGAGGGCTCTTGTCAATCAGGTTGTTCTaGACAGTGTCGATGACCTGC +
Preference number: 5 (lower is better)
Translates to: PAKVGEFWRHKAHGRGLLSIRLF*TVSMTC
Trigger: GCAGGTCATCGACACTGTCAAGAACAACCTGATTGA...CAAGAGCCCTCTGCCATGCGCTTTGTGCCTCCAAAACTCCCCCACCTTGGCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp GGATCAGAGCATTTTCTCAGGCTGACGGGGCCTGGACCAGGAGCAGCACAGACATCAATCAGGTTGTTCTaGACAGTGTCGATGACCTGC +
Preference number: 5 (lower is better)
Translates to: GSEHFLRLTGPGPGAAQTSIRLF*TVSMTC
Trigger: GCAGGTCATCGACACTGTCAAGAACAACCTGATTGA...TGTCTGTGCTGCTCCTGGTCCAGGCCCCGTCAGCCTGAGAAAATGCTCTGATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp AAGTCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCCTGTTCCTTCCTCCTaGGCGACTCCATTCTGGGCC +
Preference number: 5 (lower is better)
Translates to: KSFRKLSANVVRAWSQWSPVPSS*ATPFWA
Trigger: GGCCCAGAATGGAGTCGCCAAGGAGGAAGGAACAGG...GCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp TCGGAACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCACCTGTTCCTTCCTCCTaGGCGACTCCATTCTGGGCC +
Preference number: 5 (lower is better)
Translates to: SERPLWEEEGSKDQSIFSPVPSS*ATPFWA
Trigger: GGCCCAGAATGGAGTCGCCAAGGAGGAAGGAACAGG...TGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTTCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTAAGAGCCAGGCCACTGTaGGCACAGCTGGCACTACCA +
Preference number: 5 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLRARPL*AQLALP
Trigger: TGGTAGTGCCAGCTGTGCCAACAGTGGCCTGGCTCT...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CAA 90 bp AAACTTAAGGATAGGGCCATTACCCCAGCCTGCAGGGTTCACAGGTCATCCCAGTACTTCTGCAGCCCCTaGTCCTTGTCAATCAGGTTG +
Preference number: 5 (lower is better)
Translates to: KLKDRAITPACRVHRSSQYFCSP*SLSIRL
Trigger: CAACCTGATTGACAAGGACAAGGGGCTGCAGAAGTA...CTGGGATGACCTGTGAACCCTGCAGGCTGGGGTAATGGCCCTATCCTTAAGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CAA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACTCTGAGTGCCTGTCTTaGAGGACTGAACCGCACACC +
Preference number: 5 (lower is better)
Translates to: DLSGKKREVRIRAFSQADSECLS*RTEPHT
Trigger: GGTGTGCGGTTCAGTCCTCAAAGACAGGCACTCAGA...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTCGGTCCTGTGTGTCCTaGAGCCGGGCCTTCAGGTGC +
Preference number: 5 (lower is better)
Translates to: SSYIYFLSRASTVARETCRSCVS*SRAFRC
Trigger: GCACCTGAAGGCCCGGCTCAAGGACACACAGGACCG...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp AGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCCTGGGTAAGTGCAGCCCCTTGTCCTaGTCAATCAGGTTGTTCTTG +
Preference number: 5 (lower is better)
Translates to: RKLSANVVRAWSQWSLGKCSPLS*SIRLFL
Trigger: CAAGAACAACCTGATTGACAAGGACAAGGGGCTGCA...CTTACCCAGGCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTATCTGAGTGCCTGTCTTaGAGGACTGAACCGCACACC +
Preference number: 5 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLSECLS*RTEPHT
Trigger: GGTGTGCGGTTCAGTCCTCAAAGACAGGCACTCAGA...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CAA 90 bp AAGTCCTTCAGGAAACTGAGTGCAAATGTAGTCAGGGCTTGGAGCCAATGGAGCTGCAGCCCCTTGTCCTaGTCAATCAGGTTGTTCTTG +
Preference number: 5 (lower is better)
Translates to: KSFRKLSANVVRAWSQWSCSPLS*SIRLFL
Trigger: CAAGAACAACCTGATTGACAAGGACAAGGGGCTGCA...GCTCCATTGGCTCCAAGCCCTGACTACATTTGCACTCAGTTTCCTGAAGGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACTACTTCTGCAGCCCCTaGTCCTTGTCAATCAGGTTG +
Preference number: 5 (lower is better)
Translates to: DLSGKKREVRIRAFSQADYFCSP*SLSIRL
Trigger: CAACCTGATTGACAAGGACAAGGGGCTGCAGAAGTA...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp AACGACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTTGCAGCCCCTTGTCCTaGTCAATCAGGTTGTTCTTG +
Preference number: 5 (lower is better)
Translates to: NDLSGKKREVRIRAFSQACSPLS*SIRLFL
Trigger: CAAGAACAACCTGATTGACAAGGACAAGGGGCTGCA...AGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTCGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTCCTGTTCCTTCCTCCTaGGCGACTCCATTCTGGGCC +
Preference number: 5 (lower is better)
Translates to: SSYIYFLSRASTVARETCPVPSS*ATPFWA
Trigger: GGCCCAGAATGGAGTCGCCAAGGAGGAAGGAACAGG...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTGTGTCGATGACCTGCTaGAGCTGCCGGATCTCCTTG +
Preference number: 5 (lower is better)
Translates to: SSYIYFLSRASTVARETCVSMTC*SCRISL
Trigger: CAAGGAGATCCGGCAGCTCAAGCAGGTCATCGACAC...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp GACCTCTCTGGGAAGAAGAGGGAAGTAAGGATCAGAGCATTTTCTCAGGCTGACTCCTTGTCAATCAGGTaGTTCTTGACAGTGTCGATG +
Preference number: 5 (lower is better)
Translates to: DLSGKKREVRIRAFSQADSLSIR*FLTVSM
Trigger: CATCGACACTGTCAAGAACAACCTGATTGACAAGGA...GTCAGCCTGAGAAAATGCTCTGATCCTTACTTCCCTCTTCTTCCCAGAGAGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp ACCCTTAACATTTTTGCTCCAGGAGCCAAGGGCAAGAGGGAAAATTGCAGCCTATCCTTGTCAATCAGGTaGTTCTTGACAGTGTCGATG +
Preference number: 5 (lower is better)
Translates to: TLNIFAPGAKGKRENCSLSLSIR*FLTVSM
Trigger: CATCGACACTGTCAAGAACAACCTGATTGACAAGGA...TAGGCTGCAATTTTCCCTCTTGCCCTTGGCTCCTGGAGCAAAAATGTTAAGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
CDS-3UTR CAA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTTCTGAGTGCCTGTCTTaGAGGACTGAACCGCACACC +
Preference number: 5 (lower is better)
Translates to: SSYIYFLSRASTVARETCSECLS*RTEPHT
Trigger: GGTGTGCGGTTCAGTCCTCAAAGACAGGCACTCAGA...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS-3UTR CAA 90 bp AGTTCATACATTTATTTTCTCAGCAGAGCTTCGACTGTTGCTAGGGAGACATGTTCCTTGTCAATCAGGTaGTTCTTGACAGTGTCGATG +
Preference number: 5 (lower is better)
Translates to: SSYIYFLSRASTVARETCSLSIR*FLTVSM
Trigger: CATCGACACTGTCAAGAACAACCTGATTGACAAGGA...ACATGTCTCCCTAGCAACAGTCGAAGCTCTGCTGAGAAAATAAATGTATGAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 72 bp AAGAGGCCGCTGCTCATTCTGGCTGGCGGGCACCTGTaGGCACTGGGCGAACACTGCCAGGCCGCTACGGCC +
Preference number: 6 (lower is better)
Translates to: KRPLLILAGGHL*ALGEHCQAATA
Trigger: GGCCGTAGCGGCCTGGCAGTGTTCGCCCAGTGCCCACAGGTGCCCGCCAGCCAGAATGAGCAGCGGCCTCTT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS CCA 72 bp GGAAGAGGTGCCGTAGGCGTCCCGCACACTCACAGGTaGAGAGGTGCGCCTGGAGGCGGGGAGAAGAGGCCG +
Preference number: 6 (lower is better)
Translates to: GRGAVGVPHTHR*RGAPGGGEKRP
Trigger: CGGCCTCTTCTCCCCGCCTCCAGGCGCACCTCTCCACCTGTGAGTGTGCGGGACGCCTACGGCACCTCTTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS CCA 72 bp AGGCGTCCCGCACACTCACAGGTGGAGAGGTGCGCCTaGAGGCGGGGAGAAGAGGCCGCTGCTCATTCTGGC +
Preference number: 6 (lower is better)
Translates to: RRPAHSQVERCA*RRGEEAAAHSG
Trigger: GCCAGAATGAGCAGCGGCCTCTTCTCCCCGCCTCCAGGCGCACCTCTCCACCTGTGAGTGTGCGGGACGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS CCA 72 bp GGAAGAGGTGCCGTAGGCGTCCCGCACACTCACAGGTaGAGAGGTGCGCCTGCGAGATCCGGCAGAGGCTCG +
Preference number: 6 (lower is better)
Translates to: GRGAVGVPHTHR*RGAPARSGRGS
Trigger: CGAGCCTCTGCCGGATCTCGCAGGCGCACCTCTCCACCTGTGAGTGTGCGGGACGCCTACGGCACCTCTTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094456.10
ENSMUST00000137936.2
CDS TCA 72 bp GCAAGGCCACCGTGCAGCAACCCCGCAGCAGGGAGCTaGTGTTGTAAATGGGCTGGCCCTGACGCCGCTGGG +
Preference number: 6 (lower is better)
Translates to: ARPPCSNPAAGS*CCKWAGPDAAG
Trigger: CCCAGCGGCGTCAGGGCCAGCCCATTTACAACATCAGCTCCCTGCTGCGGGGTTGCTGCACGGTGGCCTTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS GCA 72 bp ACTGGGCGAACACTGCCAGGCCGCTACGGCCTAAAGTaGCCCCGCTGCGAGATCCGGCAGAGGCTCGTCTAC +
Preference number: 6 (lower is better)
Translates to: TGRTLPGRYGLK*PRCEIRQRLVY
Trigger: GTAGACGAGCCTCTGCCGGATCTCGCAGCGGGGGCACTTTAGGCCGTAGCGGCCTGGCAGTGTTCGCCCAGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS GCA 72 bp TGGCCCAGTGAGCGGCAGCTGATCCTACGGATGGAGTaGAAGGCCACCGTGCAGCAACCCCGCAGCAGGGAG +
Preference number: 6 (lower is better)
Translates to: WPSERQLILRME*KATVQQPRSRE
Trigger: CTCCCTGCTGCGGGGTTGCTGCACGGTGGCCTTGCACTCCATCCGTAGGATCAGCTGCCGCTCACTGGGCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 72 bp GGAGGGATCCCCTGGCTGGCGGTCACCACAGACGGCTaGGTCACTCAGCTTGGTGTAGGTGGAGCTGCGGGT +
Preference number: 6 (lower is better)
Translates to: GGIPWLAVTTDG*VTQLGVGGAAG
Trigger: ACCCGCAGCTCCACCTACACCAAGCTGAGTGACCCAGCCGTCTGTGGTGACCGCCAGCCAGGGGATCCCTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 72 bp CTGACGCCGCTGGGAGCGGCAGAGCCAGGCCACTGTTaGCACAGCTGGCACTACCACAGCCAGCAGATCCAC +
Preference number: 6 (lower is better)
Translates to: LTPLGAAEPGHC*HSWHYHSQQIH
Trigger: GTGGATCTGCTGGCTGTGGTAGTGCCAGCTGTGCCAACAGTGGCCTGGCTCTGCCGCTCCCAGCGGCGTCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS GCA 72 bp ACACTGCCAGGCCGCTACGGCCTAAAGTGCCCCCGCTaGGAGATCCGGCAGAGGCTCGTCTACTTCCCTGCA +
Preference number: 6 (lower is better)
Translates to: TLPGRYGLKCPR*EIRQRLVYFPA
Trigger: TGCAGGGAAGTAGACGAGCCTCTGCCGGATCTCGCAGCGGGGGCACTTTAGGCCGTAGCGGCCTGGCAGTGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028951.14
ENSMUST00000109875.8
CDS GCA 72 bp AGGCGTCCCGCACACTCACAGGTGGAGAGGTGCGCCTaGGAGATCCGGCAGAGGCTCGTCTACTTCCCTGCA +
Preference number: 6 (lower is better)
Translates to: RRPAHSQVERCA*EIRQRLVYFPA
Trigger: TGCAGGGAAGTAGACGAGCCTCTGCCGGATCTCGCAGGCGCACCTCTCCACCTGTGAGTGTGCGGGACGCCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094456.10
ENSMUST00000137936.2
CDS CCA 72 bp CCATCCTCGGCAGAGGTGTTGGAGGGATCCCCTGGCTaGCGGTCACCACAGACGGCTGGGTCACTCAGCTTG +
Preference number: 6 (lower is better)
Translates to: PSSAEVLEGSPG*RSPQTAGSLSL
Trigger: CAAGCTGAGTGACCCAGCCGTCTGTGGTGACCGCCAGCCAGGGGATCCCTCCAACACCTCTGCCGAGGATGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 72 bp AGCTCCATCCTCGGCAGAGGTGTTGGAGGGATCCCCTaGCTGGCGGTCACCACAGACGGCTGGGTCACTCAG +
Preference number: 6 (lower is better)
Translates to: SSILGRGVGGIP*LAVTTDGWVTQ
Trigger: CTGAGTGACCCAGCCGTCTGTGGTGACCGCCAGCCAGGGGATCCCTCCAACACCTCTGCCGAGGATGGAGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS GCA 72 bp CACCACACTCACGGGCAGTCCTGGGTTAGAGTTGACTaGAGGCCGGTGTGTGGCTGGCCCACAGGTGATGGG +
Preference number: 6 (lower is better)
Translates to: HHTHGQSWVRVD*RPVCGWPTGDG
Trigger: CCCATCACCTGTGGGCCAGCCACACACCGGCCTGCAGTCAACTCTAACCCAGGACTGCCCGTGAGTGTGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CAA 72 bp TCCGTGTCCCTATCCTGGAGCCGGTCCTGTGTGTCCTaGAGCCGGGCCTTCAGGTGCCGGATGCAAACCTCC +
Preference number: 6 (lower is better)
Translates to: SVSLSWSRSCVS*SRAFRCRMQTS
Trigger: GGAGGTTTGCATCCGGCACCTGAAGGCCCGGCTCAAGGACACACAGGACCGGCTCCAGGATAGGGACACGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CAA 72 bp GGACACACCACACTCACGGGCAGTCCTGGGTTAGAGTaGACTGCAGGCCGGTGTGTGGCTGGCCCACAGGTG +
Preference number: 6 (lower is better)
Translates to: GHTTLTGSPGLE*TAGRCVAGPQV
Trigger: CACCTGTGGGCCAGCCACACACCGGCCTGCAGTCAACTCTAACCCAGGACTGCCCGTGAGTGTGGTGTGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CAA 90 bp TCGGCAGCCACATATCCACTATCAGCTCCATCCTCGGCAGAGGTGTaGGAGGGATCCCCTGGCTGGCGGTCACCACAGACGGCTGGGTCA +
Preference number: 6 (lower is better)
Translates to: SAATYPLSAPSSAEV*EGSPGWRSPQTAGS
Trigger: TGACCCAGCCGTCTGTGGTGACCGCCAGCCAGGGGATCCCTCCAACACCTCTGCCGAGGATGGAGCTGATAGTGGATATGTGGCTGCCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS GCA 72 bp TGGTACTGCACAAAGTCTGTCTGGATGGCCCGCTCCTaGATGCAGCTGACCTGCACACCAGCCTCCATGCCG +
Preference number: 6 (lower is better)
Translates to: WYCTKSVWMARS*MQLTCTPASMP
Trigger: CGGCATGGAGGCTGGTGTGCAGGTCAGCTGCATGCAGGAGCGGGCCATCCAGACAGACTTTGTGCAGTACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 72 bp GACTCCCCTGTTCCTTCCTCCTTGGCGACTCCATTCTaGGCCACCTCCATGCTGTGCAGCAAGGTCTCCAGC +
Preference number: 6 (lower is better)
Translates to: DSPVPSSLATPF*ATSMLCSKVSS
Trigger: GCTGGAGACCTTGCTGCACAGCATGGAGGTGGCCCAGAATGGAGTCGCCAAGGAGGAAGGAACAGGGGAGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 72 bp CATATCCACTATCAGCTCCATCCTCGGCAGAGGTGTTaGAGGGATCCCCTGGCTGGCGGTCACCACAGACGG +
Preference number: 6 (lower is better)
Translates to: HIHYQLHPRQRC*RDPLAGGHHRR
Trigger: CCGTCTGTGGTGACCGCCAGCCAGGGGATCCCTCCAACACCTCTGCCGAGGATGGAGCTGATAGTGGATATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 72 bp CAAGGCCACAGTCCACTCCTGATGACAGTAGGCTACTaGCCTCCAGGGCGTCCGTCCGACTCAGGGTGTCAT +
Preference number: 6 (lower is better)
Translates to: QGHSPLLMTVGY*PPGRPSDSGCH
Trigger: ATGACACCCTGAGTCGGACGGACGCCCTGGAGGCCAGTAGCCTACTGTCATCAGGAGTGGACTGTGGCCTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CAA 90 bp TCATCGATCTCCGTGTCCCTATCCTGGAGCCGGTCCTGTGTGTCCTaGAGCCGGGCCTTCAGGTGCCGGATGCAAACCTCCTTCTGTTGC +
Preference number: 6 (lower is better)
Translates to: SSISVSLSWSRSCVS*SRAFRCRMQTSFCC
Trigger: GCAACAGAAGGAGGTTTGCATCCGGCACCTGAAGGCCCGGCTCAAGGACACACAGGACCGGCTCCAGGATAGGGACACGGAGATCGATGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS TCA 72 bp CTGAAGGGTGGGGATCCAGCTCTGAGTGCCTGTCTTTaGGGACTGAACCGCACACCTGAGCCTGGCCCACTT +
Preference number: 6 (lower is better)
Translates to: LKGGDPALSACL*GLNRTPEPGPL
Trigger: AAGTGGGCCAGGCTCAGGTGTGCGGTTCAGTCCTCAAAGACAGGCACTCAGAGCTGGATCCCCACCCTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS GCA 72 bp ATAGTGTGTACTTCATGGAGCGCCTCGGTGTGGGGCTaGTGTCACTGCCCTTGCAGGAGCCAGAGTTGCTGC +
Preference number: 6 (lower is better)
Translates to: IVCTSWSASVWG*CHCPCRSQSCC
Trigger: GCAGCAACTCTGGCTCCTGCAAGGGCAGTGACAGCAGCCCCACACCGAGGCGCTCCATGAAGTACACACTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000137936.2
CDS GCA 72 bp CGGGCCTTCAGGTGCCGGATGCAAACCTCCTTCTGTTaGAGTGGAGTCAGATACTGTTCTGGGGTGGGAGGC +
Preference number: 6 (lower is better)
Translates to: RAFRCRMQTSFC*SGVRYCSGVGG
Trigger: GCCTCCCACCCCAGAACAGTATCTGACTCCACTGCAACAGAAGGAGGTTTGCATCCGGCACCTGAAGGCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 72 bp ACCACTGCTGAGTCAGGGTCTCTGGGCCCTGAAGGGTaGGGATCCAGCTCTGAGTGCCTGTCTTTGAGGACT +
Preference number: 6 (lower is better)
Translates to: TTAESGSLGPEG*GSSSECLSLRT
Trigger: AGTCCTCAAAGACAGGCACTCAGAGCTGGATCCCCACCCTTCAGGGCCCAGAGACCCTGACTCAGCAGTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 72 bp GCAGATCCACGATGTAGTGGCGGCTCCAGTAACTCTTaGGTTCCTTTTCGGTGGTGGTGGCAGCGGCTGCCT +
Preference number: 6 (lower is better)
Translates to: ADPRCSGGSSNS*VPFRWWWQRLP
Trigger: AGGCAGCCGCTGCCACCACCACCGAAAAGGAACCCAAGAGTTACTGGAGCCGCCACTACATCGTGGATCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CAA 72 bp ACATATCCACTATCAGCTCCATCCTCGGCAGAGGTGTaGGAGGGATCCCCTGGCTGGCGGTCACCACAGACG +
Preference number: 6 (lower is better)
Translates to: TYPLSAPSSAEV*EGSPGWRSPQT
Trigger: CGTCTGTGGTGACCGCCAGCCAGGGGATCCCTCCAACACCTCTGCCGAGGATGGAGCTGATAGTGGATATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 72 bp GTGTTCAGGTCAGGCTGGTACTGCACAAAGTCTGTCTaGATGGCCCGCTCCTGCATGCAGCTGACCTGCACA +
Preference number: 6 (lower is better)
Translates to: VFRSGWYCTKSV*MARSCMQLTCT
Trigger: TGTGCAGGTCAGCTGCATGCAGGAGCGGGCCATCCAGACAGACTTTGTGCAGTACCAGCCTGACCTGAACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CCA 72 bp TGGCCCACTTTCTCCAGGATGGTGTTCAGGTCAGGCTaGTACTGCACAAAGTCTGTCTGGATGGCCCGCTCC +
Preference number: 6 (lower is better)
Translates to: WPTFSRMVFRSG*YCTKSVWMARS
Trigger: GGAGCGGGCCATCCAGACAGACTTTGTGCAGTACCAGCCTGACCTGAACACCATCCTGGAGAAAGTGGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS TCA 72 bp TCTGAGTGCCTGTCTTTGAGGACTGAACCGCACACCTaGGCCTGGCCCACTTTCTCCAGGATGGTGTTCAGG +
Preference number: 6 (lower is better)
Translates to: SECLSLRTEPHT*AWPTFSRMVFR
Trigger: CCTGAACACCATCCTGGAGAAAGTGGGCCAGGCTCAGGTGTGCGGTTCAGTCCTCAAAGACAGGCACTCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS GCA 72 bp GATTGTCGCTGCATAGTGTGTACTTCATGGAGCGCCTaGGAGATCCGGCAGAGGCTCGTCTACTTCCCTGCA +
Preference number: 6 (lower is better)
Translates to: DCRCIVCTSWSA*EIRQRLVYFPA
Trigger: TGCAGGGAAGTAGACGAGCCTCTGCCGGATCTCGCAGGCGCTCCATGAAGTACACACTATGCAGCGACAATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109877.10
CDS TCA 72 bp GTCAGATACTGTTCTGGGGTGGGAGGCTTGATGCCGTaGTTGTCGCTGCATAGTGTGTACTTCATGGAGCGC +
Preference number: 6 (lower is better)
Translates to: VRYCSGVGGLMP*LSLHSVYFMER
Trigger: GCGCTCCATGAAGTACACACTATGCAGCGACAATCACGGCATCAAGCCTCCCACCCCAGAACAGTATCTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
ENSMUST00000137936.2
CDS CCA 72 bp CTTCAGGTGCCGGATGCAAACCTCCTTCTGTTGCAGTaGAGTCAGATACTGTTCTGGGGTGGGAGGCTTGAT +
Preference number: 6 (lower is better)
Translates to: LQVPDANLLLLQ*SQILFWGGRLD
Trigger: ATCAAGCCTCCCACCCCAGAACAGTATCTGACTCCACTGCAACAGAAGGAGGTTTGCATCCGGCACCTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS TCA 72 bp GCAGTGGAGTCAGATACTGTTCTGGGGTGGGAGGCTTaGTGCCGTGATTGTCGCTGCATAGTGTGTACTTCA +
Preference number: 6 (lower is better)
Translates to: AVESDTVLGWEA*CRDCRCIVCTS
Trigger: TGAAGTACACACTATGCAGCGACAATCACGGCATCAAGCCTCCCACCCCAGAACAGTATCTGACTCCACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
ENSMUST00000137936.2
CDS GCA 72 bp TTGTCAATCAGGTTGTTCTTGACAGTGTCGATGACCTaGTTGAGCTGCCGGATCTCCTTGCGGGCCTCTTTC +
Preference number: 6 (lower is better)
Translates to: LSIRLFLTVSMT*LSCRISLRASF
Trigger: GAAAGAGGCCCGCAAGGAGATCCGGCAGCTCAAGCAGGTCATCGACACTGTCAAGAACAACCTGATTGACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CAA 72 bp TTCTGCAGCCCCTTGTCCTTGTCAATCAGGTTGTTCTaGACAGTGTCGATGACCTGCTTGAGCTGCCGGATC +
Preference number: 6 (lower is better)
Translates to: FCSPLSLSIRLF*TVSMTCLSCRI
Trigger: GATCCGGCAGCTCAAGCAGGTCATCGACACTGTCAAGAACAACCTGATTGACAAGGACAAGGGGCTGCAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CAA 72 bp AAGTACTTCTGCAGCCCCTTGTCCTTGTCAATCAGGTaGTTCTTGACAGTGTCGATGACCTGCTTGAGCTGC +
Preference number: 6 (lower is better)
Translates to: KYFCSPLSLSIR*FLTVSMTCLSC
Trigger: GCAGCTCAAGCAGGTCATCGACACTGTCAAGAACAACCTGATTGACAAGGACAAGGGGCTGCAGAAGTACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CAA 72 bp TTGATGTCCACAAAGTACTTCTGCAGCCCCTTGTCCTaGTCAATCAGGTTGTTCTTGACAGTGTCGATGACC +
Preference number: 6 (lower is better)
Translates to: LMSTKYFCSPLS*SIRLFLTVSMT
Trigger: GGTCATCGACACTGTCAAGAACAACCTGATTGACAAGGACAAGGGGCTGCAGAAGTACTTTGTGGACATCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10
CDS CAA 72 bp TGGATATTGATGTCCACAAAGTACTTCTGCAGCCCCTaGTCCTTGTCAATCAGGTTGTTCTTGACAGTGTCG +
Preference number: 6 (lower is better)
Translates to: WILMSTKYFCSP*SLSIRLFLTVS
Trigger: CGACACTGTCAAGAACAACCTGATTGACAAGGACAAGGGGCTGCAGAAGTACTTTGTGGACATCAATATCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028951.14
ENSMUST00000094456.10
ENSMUST00000109875.8
ENSMUST00000109877.10