Pregenerated sensors for SNORC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026258

Ensembl transcript IDs: ENSMUST00000027476.6

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CTGCAATGGCGCCTGGTCCAAGCGATCCTCCATCCTGGTCCACCCTaGCAGGAGGGGTGCTGTCCTCTGGTGCTGGAGCAGAGGTGGGGA	+
Preference number: 5 (lower is better) Translates to: LQWRLVQAILHPGPP*QEGCCPLVLEQRWG Trigger: TCCCCACCTCTGCTCCAGCACCAGAGGACAGCACCCCTCCTGCCAGGGTGGACCAGGATGGAGGATCGCTTGGACCAGGCGCCATTGCAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS CCA 90 bp	GCAGGTAGCCAGCAGGGCAGCGATCACGATGGCTGCAATGGCGCCTaGTCCAAGCGATCCTCCATCCTGGTCCACCCTGGCAGGAGGGGT	+
Preference number: 5 (lower is better) Translates to: AGSQQGSDHDGCNGA*SKRSSILVHPGRRG Trigger: ACCCCTCCTGCCAGGGTGGACCAGGATGGAGGATCGCTTGGACCAGGCGCCATTGCAGCCATCGTGATCGCTGCCCTGCTGGCTACCTGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS GCA 90 bp	TGCCAGCACCACGCAGGTAGCCAGCAGGGCAGCGATCACGATGGCTaGAATGGCGCCTGGTCCAAGCGATCCTCCATCCTGGTCCACCCT	+
Preference number: 5 (lower is better) Translates to: CQHHAGSQQGSDHDG*NGAWSKRSSILVHP Trigger: AGGGTGGACCAGGATGGAGGATCGCTTGGACCAGGCGCCATTGCAGCCATCGTGATCGCTGCCCTGCTGGCTACCTGCGTGGTGCTGGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS CCA 90 bp	CCACCCTGGCAGGAGGGGTGCTGTCCTCTGGTGCTGGAGCAGAGGTaGGGAACGGAGGGCCAGAGACAGCAAATTCCTGGTTGTGGCTTG	+
Preference number: 5 (lower is better) Translates to: PPWQEGCCPLVLEQR*GTEGQRQQIPGCGL Trigger: CAAGCCACAACCAGGAATTTGCTGTCTCTGGCCCTCCGTTCCCCACCTCTGCTCCAGCACCAGAGGACAGCACCCCTCCTGCCAGGGTGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS CCA 72 bp	TCAATAGGCTCGTTCCACAGGGTGGGATCGGGCTCCTaGGGACCCTCTGCTGTGAGCACCGCAGGGGCCAGG	+
Preference number: 6 (lower is better) Translates to: SIGSFHRVGSGS*GPSAVSTAGAR Trigger: CCTGGCCCCTGCGGTGCTCACAGCAGAGGGTCCCCAGGAGCCCGATCCCACCCTGTGGAACGAGCCTATTGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS CCA 72 bp	CGCCTGGTCCAAGCGATCCTCCATCCTGGTCCACCCTaGCAGGAGGGGTGCTGTCCTCTGGTGCTGGAGCAG	+
Preference number: 6 (lower is better) Translates to: RLVQAILHPGPP*QEGCCPLVLEQ Trigger: CTGCTCCAGCACCAGAGGACAGCACCCCTCCTGCCAGGGTGGACCAGGATGGAGGATCGCTTGGACCAGGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS CCA 72 bp	GCTGCAATGGCGCCTGGTCCAAGCGATCCTCCATCCTaGTCCACCCTGGCAGGAGGGGTGCTGTCCTCTGGT	+
Preference number: 6 (lower is better) Translates to: AAMAPGPSDPPS*STLAGGVLSSG Trigger: ACCAGAGGACAGCACCCCTCCTGCCAGGGTGGACCAGGATGGAGGATCGCTTGGACCAGGCGCCATTGCAGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS CCA 72 bp	CAGCAGGGCAGCGATCACGATGGCTGCAATGGCGCCTaGTCCAAGCGATCCTCCATCCTGGTCCACCCTGGC	+
Preference number: 6 (lower is better) Translates to: QQGSDHDGCNGA*SKRSSILVHPG Trigger: GCCAGGGTGGACCAGGATGGAGGATCGCTTGGACCAGGCGCCATTGCAGCCATCGTGATCGCTGCCCTGCTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS GCA 72 bp	CACGCAGGTAGCCAGCAGGGCAGCGATCACGATGGCTaGAATGGCGCCTGGTCCAAGCGATCCTCCATCCTG	+
Preference number: 6 (lower is better) Translates to: HAGSQQGSDHDG*NGAWSKRSSIL Trigger: CAGGATGGAGGATCGCTTGGACCAGGCGCCATTGCAGCCATCGTGATCGCTGCCCTGCTGGCTACCTGCGTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS CCA 72 bp	GGGAACGGAGGGCCAGAGACAGCAAATTCCTGGTTGTaGCTTGTGCTCTCCAGGGGACCTTCACCAGAGGGC	+
Preference number: 6 (lower is better) Translates to: GNGGPETANSWL*LVLSRGPSPEG Trigger: GCCCTCTGGTGAAGGTCCCCTGGAGAGCACAAGCCACAACCAGGAATTTGCTGTCTCTGGCCCTCCGTTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS CCA 72 bp	GAGGTGGGGAACGGAGGGCCAGAGACAGCAAATTCCTaGTTGTGGCTTGTGCTCTCCAGGGGACCTTCACCA	+
Preference number: 6 (lower is better) Translates to: EVGNGGPETANS*LWLVLSRGPSP Trigger: TGGTGAAGGTCCCCTGGAGAGCACAAGCCACAACCAGGAATTTGCTGTCTCTGGCCCTCCGTTCCCCACCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS CAA 72 bp	GTGGGGAACGGAGGGCCAGAGACAGCAAATTCCTGGTaGTGGCTTGTGCTCTCCAGGGGACCTTCACCAGAG	+
Preference number: 6 (lower is better) Translates to: VGNGGPETANSW*WLVLSRGPSPE Trigger: CTCTGGTGAAGGTCCCCTGGAGAGCACAAGCCACAACCAGGAATTTGCTGTCTCTGGCCCTCCGTTCCCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS CAA 90 bp	GGAGCAGAGGTGGGGAACGGAGGGCCAGAGACAGCAAATTCCTGGTaGTGGCTTGTGCTCTCCAGGGGACCTTCACCAGAGGGCAATTCA	+
Preference number: 6 (lower is better) Translates to: GAEVGNGGPETANSW*WLVLSRGPSPEGNS Trigger: TGAATTGCCCTCTGGTGAAGGTCCCCTGGAGAGCACAAGCCACAACCAGGAATTTGCTGTCTCTGGCCCTCCGTTCCCCACCTCTGCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS CAA 72 bp	ACGGAGGGCCAGAGACAGCAAATTCCTGGTTGTGGCTaGTGCTCTCCAGGGGACCTTCACCAGAGGGCAATT	+
Preference number: 6 (lower is better) Translates to: TEGQRQQIPGCG*CSPGDLHQRAI Trigger: AATTGCCCTCTGGTGAAGGTCCCCTGGAGAGCACAAGCCACAACCAGGAATTTGCTGTCTCTGGCCCTCCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027476.6
CDS GCA 72 bp	GAGGGCCAGAGACAGCAAATTCCTGGTTGTGGCTTGTaGTCTCCAGGGGACCTTCACCAGAGGGCAATTCAA	+
Preference number: 6 (lower is better) Translates to: EGQRQQIPGCGL*SPGDLHQRAIQ Trigger: TTGAATTGCCCTCTGGTGAAGGTCCCCTGGAGAGCACAAGCCACAACCAGGAATTTGCTGTCTCTGGCCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027476.6