Pregenerated sensors for SNN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037972Ensembl transcript IDs: ENSMUST00000089011.6, ENSMUST00000228962.2
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAATGGACAGCCCACCAGGAGGCGGAGGGGGAAGGCCAGAAGAGCTaGGACCTGGAGCCAGTGCATGCGATGACAAAGCCCGAGGAGACC | + |
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Preference number: 1 (lower is better) Translates to: QWTAHQEAEGEGQKS*DLEPVHAMTKPEET Trigger: GGTCTCCTCGGGCTTTGTCATCGCATGCACTGGCTCCAGGTCCCAGCTCTTCTGGCCTTCCCCCTCCGCCTCCTGGTGGGCTGTCCATTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR GCA 90 bp | GGCGGAGGGGGAAGGCCAGAAGAGCTGGGACCTGGAGCCAGTGCATaGGATGACAAAGCCCGAGGAGACCATGCCAGCAAGTGTCAACCC | + |
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Preference number: 1 (lower is better) Translates to: GGGGRPEELGPGASA*DDKARGDHASKCQP Trigger: GGGTTGACACTTGCTGGCATGGTCTCCTCGGGCTTTGTCATCGCATGCACTGGCTCCAGGTCCCAGCTCTTCTGGCCTTCCCCCTCCGCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR TCA 90 bp | AGGGGGAAGGCCAGAAGAGCTGGGACCTGGAGCCAGTGCATGCGATaGCAAAGCCCGAGGAGACCATGCCAGCAAGTGTCAACCCCTCTC | + |
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Preference number: 1 (lower is better) Translates to: RGKARRAGTWSQCMR*QSPRRPCQQVSTPL Trigger: GAGAGGGGTTGACACTTGCTGGCATGGTCTCCTCGGGCTTTGTCATCGCATGCACTGGCTCCAGGTCCCAGCTCTTCTGGCCTTCCCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR CCA 90 bp | CCCTCTCACAGAGCAACGTGTCTGCTTCCACCCTCTCAGTGCTTCTaGGCTGGCTGCAAACAGAACCATGGCCTTGGCCTTCACAGCCCA | + |
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Preference number: 1 (lower is better) Translates to: PSHRATCLLPPSQCF*AGCKQNHGLGLHSP Trigger: TGGGCTGTGAAGGCCAAGGCCATGGTTCTGTTTGCAGCCAGCCCAGAAGCACTGAGAGGGTGGAAGCAGACACGTTGCTCTGTGAGAGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR TCA 90 bp | GCAAGAGACTGCTCTGCCAAGCTGCCTGGCAACCCTCAGGACTCATaGGGTCTCATCCTTCACAGGCTTCCAAGCAAGCGCAACAGCTTC | + |
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Preference number: 1 (lower is better) Translates to: ARDCSAKLPGNPQDS*GLILHRLPSKRNSF Trigger: GAAGCTGTTGCGCTTGCTTGGAAGCCTGTGAAGGATGAGACCTCATGAGTCCTGAGGGTTGCCAGGCAGCTTGGCAGAGCAGTCTCTTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR GCA 90 bp | AGACCATGCCAGCAAGTGTCAACCCCTCTCACAGAGCAACGTGTCTaGTTCCACCCTCTCAGTGCTTCTGGGCTGGCTGCAAACAGAACC | + |
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Preference number: 1 (lower is better) Translates to: RPCQQVSTPLTEQRV*FHPLSASGLAANRT Trigger: GGTTCTGTTTGCAGCCAGCCCAGAAGCACTGAGAGGGTGGAAGCAGACACGTTGCTCTGTGAGAGGGGTTGACACTTGCTGGCATGGTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR GCA 90 bp | GGGGTGTACTGGGCATGCTCAAAACCAAAGGGCAAGAGACTGCTCTaGCAAGCTGCCTGGCAACCCTCAGGACTCATGAGGTCTCATCCT | + |
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Preference number: 1 (lower is better) Translates to: GVYWACSKPKGKRLL*QAAWQPSGLMRSHP Trigger: AGGATGAGACCTCATGAGTCCTGAGGGTTGCCAGGCAGCTTGGCAGAGCAGTCTCTTGCCCTTTGGTTTTGAGCATGCCCAGTACACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR CCA 90 bp | CAGGCTCTGGTGTCTGCAGAGGACCAGAGCAGTTTCTGCAAAGCCTaGGCTGAAGGGGTGTACTGGGCATGCTCAAAACCAAAGGGCAAG | + |
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Preference number: 1 (lower is better) Translates to: QALVSAEDQSSFCKA*AEGVYWACSKPKGK Trigger: CTTGCCCTTTGGTTTTGAGCATGCCCAGTACACCCCTTCAGCCCAGGCTTTGCAGAAACTGCTCTGGTCCTCTGCAGACACCAGAGCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR CCA 90 bp | GAGGACCAGAGCAGTTTCTGCAAAGCCTGGGCTGAAGGGGTGTACTaGGCATGCTCAAAACCAAAGGGCAAGAGACTGCTCTGCCAAGCT | + |
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Preference number: 1 (lower is better) Translates to: EDQSSFCKAWAEGVY*ACSKPKGKRLLCQA Trigger: AGCTTGGCAGAGCAGTCTCTTGCCCTTTGGTTTTGAGCATGCCCAGTACACCCCTTCAGCCCAGGCTTTGCAGAAACTGCTCTGGTCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR TCA 90 bp | TCTGGTGTCTGCAGAGGACCAGAGCAGTTTCTGCAAAGCCTGGGCTaGAGGGGTGTACTGGGCATGCTCAAAACCAAAGGGCAAGAGACT | + |
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Preference number: 1 (lower is better) Translates to: SGVCRGPEQFLQSLG*RGVLGMLKTKGQET Trigger: AGTCTCTTGCCCTTTGGTTTTGAGCATGCCCAGTACACCCCTTCAGCCCAGGCTTTGCAGAAACTGCTCTGGTCCTCTGCAGACACCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR GCA 90 bp | AGGTCTCATCCTTCACAGGCTTCCAAGCAAGCGCAACAGCTTCCTTaGAGTGACTCCGCCGTCTACACACACTGCTCTTTTAACAAAGCT | + |
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Preference number: 1 (lower is better) Translates to: RSHPSQASKQAQQLP*SDSAVYTHCSFNKA Trigger: AGCTTTGTTAAAAGAGCAGTGTGTGTAGACGGCGGAGTCACTGCAAGGAAGCTGTTGCGCTTGCTTGGAAGCCTGTGAAGGATGAGACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR TCA 90 bp | GACATAAGAAATATCCTGGAGACATGTTGCTGGTTCCCTTACCTGTaGGAACCAGGCCCTGAACCTGAACTCTTGGTGACTCTTGTAAAT | + |
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Preference number: 1 (lower is better) Translates to: DIRNILETCCWFPYL*EPGPEPELLVTLVN Trigger: ATTTACAAGAGTCACCAAGAGTTCAGGTTCAGGGCCTGGTTCTCACAGGTAAGGGAACCAGCAACATGTCTCCAGGATATTTCTTATGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR-3UTR CCA 90 bp | AGGAGGCGGAGGGGGAAGGCCAGAAGAGCTGGGACCTGGAGCCAGTGCATGCGACTGCAAACAGAACCATaGCCTTGGCCTTCACAGCCC | + |
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Preference number: 2 (lower is better) Translates to: RRRRGKARRAGTWSQCMRLQTEP*PWPSQP Trigger: GGGCTGTGAAGGCCAAGGCCATGGTTCTGTTTGCAG...TCGCATGCACTGGCTCCAGGTCCCAGCTCTTCTGGCCTTCCCCCTCCGCCTCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR-3UTR CCA 90 bp | GTGTCTGCAGAGGACCAGAGCAGTTTCTGCAAAGCCTGGGCTGAAGGGGTGTACGCCCACTGCCTGCAATaGACAGCCCACCAGGAGGCG | + |
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Preference number: 2 (lower is better) Translates to: VSAEDQSSFCKAWAEGVYAHCLQ*TAHQEA Trigger: CGCCTCCTGGTGGGCTGTCCATTGCAGGCAGTGGGC...GTACACCCCTTCAGCCCAGGCTTTGCAGAAACTGCTCTGGTCCTCTGCAGACAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR-3UTR GCA 90 bp | AGTGCATGCGATGACAAAGCCCGAGGAGACCATGCCAGCAAGTGTCAACCCCTCCTTCCACCCTCTCAGTaGTTCTGGGCTGGCTGCAAA | + |
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Preference number: 2 (lower is better) Translates to: SACDDKARGDHASKCQPLLPPSQ*FWAGCK Trigger: TTTGCAGCCAGCCCAGAAGCACTGAGAGGGTGGAAG...GAGGGGTTGACACTTGCTGGCATGGTCTCCTCGGGCTTTGTCATCGCATGCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGAGGACCAGAGCAGTTTCTGCAAAGCCTGGGCTGAAGGGGTGTACTGGGCAAGAGAAAGGGAGGGGTaGGGTGTGGTTTTCCTCCAT | + |
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Preference number: 2 (lower is better) Translates to: AEDQSSFCKAWAEGVYWAREREG*GVVFLH Trigger: ATGGAGGAAAACCACACCCCACCCCTCCCTTTCTCT...TGCCCAGTACACCCCTTCAGCCCAGGCTTTGCAGAAACTGCTCTGGTCCTCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR-3UTR CCA 90 bp | CTGCTCCCAGGACTAACACACATCCAAGAACTCCTTAGCAGCCTCTGTCCATGGCTGCAAACAGAACCATaGCCTTGGCCTTCACAGCCC | + |
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Preference number: 2 (lower is better) Translates to: LLPGLTHIQELLSSLCPWLQTEP*PWPSQP Trigger: GGGCTGTGAAGGCCAAGGCCATGGTTCTGTTTGCAG...CCATGGACAGAGGCTGCTAAGGAGTTCTTGGATGTGTGTTAGTCCTGGGAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR-3UTR TCA 90 bp | ACCTTCTGTTCCCCTCCTAGACCTACAGAGTCACTGCTCCCAGGACTAACACACAAGGAAGCTCACTTGTaGAAAGGTGGGGTGTGGGGA | + |
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Preference number: 2 (lower is better) Translates to: TFCSPPRPTESLLPGLTHKEAHL*KGGVWG Trigger: TCCCCACACCCCACCTTTTCACAAGTGAGCTTCCTT...GTGTGTTAGTCCTGGGAGCAGTGACTCTGTAGGTCTAGGAGGGGAACAGAAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR-3UTR GCA 90 bp | AGGCTTAAGCACGTGCTTCTGGGCCTATTTACAGTTCACAGGTTGGTTAGTTCACAGCAAGGTCAGGCCTaGCCACTGCCTGCAATGGAC | + |
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Preference number: 2 (lower is better) Translates to: RLKHVLLGLFTVHRLVSSQQGQA*PLPAMD Trigger: GTCCATTGCAGGCAGTGGGCAGGCCTGACCTTGCTG...TGAACTAACCAACCTGTGAACTGTAAATAGGCCCAGAAGCACGTGCTTAAGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR-3UTR GCA 90 bp | CAAAAAGGCTTAAGCACGTGCTTCTGGGCCTATTTACAGTTCACAGGTTGGTTAAGCCCGAGGAGACCATaGCAGCAAGTGTCAACCCCT | + |
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Preference number: 2 (lower is better) Translates to: QKGLSTCFWAYLQFTGWLSPRRP*QQVSTP Trigger: AGGGGTTGACACTTGCTGGCATGGTCTCCTCGGGCT...TAACCAACCTGTGAACTGTAAATAGGCCCAGAAGCACGTGCTTAAGCCTTTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR-3UTR GCA 90 bp | TCACGCATTACAGTAGTAGCTCCATCAAAAACAGGCTCAGCTAAAACATTCAAGCAGCAAGGTCAGGCCTaGCCACTGCCTGCAATGGAC | + |
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Preference number: 2 (lower is better) Translates to: SRITVVAPSKTGSAKTFKQQGQA*PLPAMD Trigger: GTCCATTGCAGGCAGTGGGCAGGCCTGACCTTGCTG...CTTGAATGTTTTAGCTGAGCCTGTTTTTGATGGAGCTACTACTGTAATGCGTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR-3UTR CCA 90 bp | ACCTTCTGTTCCCCTCCTAGACCTACAGAGTCACTGCTCCCAGGACTAACACACCTCCCAACCCCATATTaGTATACACTGCTAAGAAGT | + |
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Preference number: 2 (lower is better) Translates to: TFCSPPRPTESLLPGLTHLPTPY*YTLLRS Trigger: ACTTCTTAGCAGTGTATACCAATATGGGGTTGGGAG...GTGTGTTAGTCCTGGGAGCAGTGACTCTGTAGGTCTAGGAGGGGAACAGAAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR-3UTR CCA 90 bp | AGGTTGGTTAGTTCACGCATTACAGTAGTAGCTCCATCAAAAACAGGCTCAGCTTCAGTGCTTCTGGGCTaGCTGCAAACAGAACCATGG | + |
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Preference number: 2 (lower is better) Translates to: RLVSSRITVVAPSKTGSASVLLG*LQTEPW Trigger: CCATGGTTCTGTTTGCAGCCAGCCCAGAAGCACTGA...AGCTGAGCCTGTTTTTGATGGAGCTACTACTGTAATGCGTGAACTAACCAACCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR-3UTR CCA 90 bp | CAAAAAGGCTTAAGCACGTGCTTCTGGGCCTATTTACAGTTCACAGGTTGGTTATCAGTGCTTCTGGGCTaGCTGCAAACAGAACCATGG | + |
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Preference number: 2 (lower is better) Translates to: QKGLSTCFWAYLQFTGWLSVLLG*LQTEPW Trigger: CCATGGTTCTGTTTGCAGCCAGCCCAGAAGCACTGA...TAACCAACCTGTGAACTGTAAATAGGCCCAGAAGCACGTGCTTAAGCCTTTTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR-3UTR CCA 90 bp | ACCTTCTGTTCCCCTCCTAGACCTACAGAGTCACTGCTCCCAGGACTAACACACTTACAGTTCACAGGTTaGTTAGTTCACGCATTACAG | + |
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Preference number: 2 (lower is better) Translates to: TFCSPPRPTESLLPGLTHLQFTG*LVHALQ Trigger: CTGTAATGCGTGAACTAACCAACCTGTGAACTGTAA...GTGTGTTAGTCCTGGGAGCAGTGACTCTGTAGGTCTAGGAGGGGAACAGAAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR CAA 90 bp | AAAAGGCTTAAGCACGTGCTTCTGGGCCTATTTACAGTTCACAGGTaGGTTAGTTCACGCATTACAGTAGTAGCTCCATCAAAAACAGGC | + |
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Preference number: 2 (lower is better) Translates to: KRLKHVLLGLFTVHR*VSSRITVVAPSKTG Trigger: GCCTGTTTTTGATGGAGCTACTACTGTAATGCGTGAACTAACCAACCTGTGAACTGTAAATAGGCCCAGAAGCACGTGCTTAAGCCTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR TCA 72 bp | GCCAGAAGAGCTGGGACCTGGAGCCAGTGCATGCGATaGCAAAGCCCGAGGAGACCATGCCAGCAAGTGTCA | + |
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Preference number: 3 (lower is better) Translates to: ARRAGTWSQCMR*QSPRRPCQQVS Trigger: TGACACTTGCTGGCATGGTCTCCTCGGGCTTTGTCATCGCATGCACTGGCTCCAGGTCCCAGCTCTTCTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR TCA 72 bp | TGCTCTGCCAAGCTGCCTGGCAACCCTCAGGACTCATaGGGTCTCATCCTTCACAGGCTTCCAAGCAAGCGC | + |
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Preference number: 3 (lower is better) Translates to: CSAKLPGNPQDS*GLILHRLPSKR Trigger: GCGCTTGCTTGGAAGCCTGTGAAGGATGAGACCTCATGAGTCCTGAGGGTTGCCAGGCAGCTTGGCAGAGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR GCA 72 bp | CAGCAAGTGTCAACCCCTCTCACAGAGCAACGTGTCTaGTTCCACCCTCTCAGTGCTTCTGGGCTGGCTGCA | + |
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Preference number: 3 (lower is better) Translates to: QQVSTPLTEQRV*FHPLSASGLAA Trigger: TGCAGCCAGCCCAGAAGCACTGAGAGGGTGGAAGCAGACACGTTGCTCTGTGAGAGGGGTTGACACTTGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR GCA 72 bp | TGGGCATGCTCAAAACCAAAGGGCAAGAGACTGCTCTaGCAAGCTGCCTGGCAACCCTCAGGACTCATGAGG | + |
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Preference number: 3 (lower is better) Translates to: WACSKPKGKRLL*QAAWQPSGLMR Trigger: CCTCATGAGTCCTGAGGGTTGCCAGGCAGCTTGGCAGAGCAGTCTCTTGCCCTTTGGTTTTGAGCATGCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR TCA 72 bp | TGCAGAGGACCAGAGCAGTTTCTGCAAAGCCTGGGCTaGAGGGGTGTACTGGGCATGCTCAAAACCAAAGGG | + |
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Preference number: 3 (lower is better) Translates to: CRGPEQFLQSLG*RGVLGMLKTKG Trigger: CCCTTTGGTTTTGAGCATGCCCAGTACACCCCTTCAGCCCAGGCTTTGCAGAAACTGCTCTGGTCCTCTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR GCA 72 bp | TCTCACAGAGCAACGTGTCTGCTTCCACCCTCTCAGTaGTTCTGGGCTGGCTGCAAACAGAACCATGGCCTT | + |
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Preference number: 3 (lower is better) Translates to: SHRATCLLPPSQ*FWAGCKQNHGL Trigger: AAGGCCATGGTTCTGTTTGCAGCCAGCCCAGAAGCACTGAGAGGGTGGAAGCAGACACGTTGCTCTGTGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR GCA 72 bp | CTCAAAACCAAAGGGCAAGAGACTGCTCTGCCAAGCTaGCTGGCAACCCTCAGGACTCATGAGGTCTCATCC | + |
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Preference number: 3 (lower is better) Translates to: LKTKGQETALPS*LATLRTHEVSS Trigger: GGATGAGACCTCATGAGTCCTGAGGGTTGCCAGGCAGCTTGGCAGAGCAGTCTCTTGCCCTTTGGTTTTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR GCA 72 bp | TGTACTGGGCATGCTCAAAACCAAAGGGCAAGAGACTaGTCTGCCAAGCTGCCTGGCAACCCTCAGGACTCA | + |
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Preference number: 3 (lower is better) Translates to: CTGHAQNQRARD*SAKLPGNPQDS Trigger: TGAGTCCTGAGGGTTGCCAGGCAGCTTGGCAGAGCAGTCTCTTGCCCTTTGGTTTTGAGCATGCCCAGTACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR GCA 72 bp | TTCAGACTTCAAGTAGCCTCCACAGGCTCTGGTGTCTaGAGAGGACCAGAGCAGTTTCTGCAAAGCCTGGGC | + |
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Preference number: 3 (lower is better) Translates to: FRLQVASTGSGV*RGPEQFLQSLG Trigger: GCCCAGGCTTTGCAGAAACTGCTCTGGTCCTCTGCAGACACCAGAGCCTGTGGAGGCTACTTGAAGTCTGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR TCA 72 bp | CTTACTCGTCCCTCTCTGGATGGACTGACTCAAACTTaGAAGACCCCCTGGCAACAGGGGGTGATAGGAAGC | + |
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Preference number: 3 (lower is better) Translates to: LTRPSLDGLTQT*KTPWQQGVIGS Trigger: GCTTCCTATCACCCCCTGTTGCCAGGGGGTCTTTCAAGTTTGAGTCAGTCCATCCAGAGAGGGACGAGTAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR TCA 72 bp | TGGCTTAGCCTCGGAGTTCCTGCAAGCTCCCCAGGATaGAAGGCTAGCTTCGTAACCATCAGAAGACCTGAC | + |
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Preference number: 3 (lower is better) Translates to: WLSLGVPASSPG*KASFVTIRRPD Trigger: GTCAGGTCTTCTGATGGTTACGAAGCTAGCCTTTCATCCTGGGGAGCTTGCAGGAACTCCGAGGCTAAGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR GCA 72 bp | TTCTGCAAAGCCTGGGCTGAAGGGGTGTACTGGGCATaGTCAAAACCAAAGGGCAAGAGACTGCTCTGCCAA | + |
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Preference number: 3 (lower is better) Translates to: FCKAWAEGVYWA*SKPKGKRLLCQ Trigger: TTGGCAGAGCAGTCTCTTGCCCTTTGGTTTTGAGCATGCCCAGTACACCCCTTCAGCCCAGGCTTTGCAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR CCA 72 bp | AGCAGTTTCTGCAAAGCCTGGGCTGAAGGGGTGTACTaGGCATGCTCAAAACCAAAGGGCAAGAGACTGCTC | + |
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Preference number: 3 (lower is better) Translates to: SSFCKAWAEGVY*ACSKPKGKRLL Trigger: GAGCAGTCTCTTGCCCTTTGGTTTTGAGCATGCCCAGTACACCCCTTCAGCCCAGGCTTTGCAGAAACTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR TCA 72 bp | GTTCTCCATATGACCTCACCAATGCCCCACAGTGCCTaGACTTACTCGTCCCTCTCTGGATGGACTGACTCA | + |
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Preference number: 3 (lower is better) Translates to: VLHMTSPMPHSA*TYSSLSGWTDS Trigger: TGAGTCAGTCCATCCAGAGAGGGACGAGTAAGTTCAGGCACTGTGGGGCATTGGTGAGGTCATATGGAGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR-3UTR CAA 90 bp | ACCTTCTGTTCCCCTCCTAGACCTACAGAGTCACTGCTCCCAGGACTAACACACCCTCCCAACCCCATATaGGTATACACTGCTAAGAAG | + |
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Preference number: 3 (lower is better) Translates to: TFCSPPRPTESLLPGLTHPPNPI*VYTAKK Trigger: CTTCTTAGCAGTGTATACCAATATGGGGTTGGGAGG...GTGTGTTAGTCCTGGGAGCAGTGACTCTGTAGGTCTAGGAGGGGAACAGAAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR GCA 72 bp | CAGCTTCCTTGCAGTGACTCCGCCGTCTACACACACTaGTCTTTTAACAAAGCTGAACTAGAGAAAGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: QLPCSDSAVYTH*SFNKAELEKGR Trigger: CCTCCCTTTCTCTAGTTCAGCTTTGTTAAAAGAGCAGTGTGTGTAGACGGCGGAGTCACTGCAAGGAAGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR TCA 72 bp | AGCACAGAGTGCCTTGAGAGCTGTGTCAGGAAGCTCTaGCTACAAAGCCCCAAGGATCAAAGTAAAACCCAA | + |
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Preference number: 3 (lower is better) Translates to: STECLESCVRKL*LQSPKDQSKTQ Trigger: TTGGGTTTTACTTTGATCCTTGGGGCTTTGTAGTCAGAGCTTCCTGACACAGCTCTCAAGGCACTCTGTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR TCA 72 bp | TTCGGTGTAGATCCAAGCTGGCCTTGGATCCATGGATaGTGGAGAAAAGAATCAGCAGTGTTTAGGCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: FGVDPSWPWIHG*WRKESAVFRLL Trigger: CAGCAGCCTAAACACTGCTGATTCTTTTCTCCATCATCCATGGATCCAAGGCCAGCTTGGATCTACACCGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR CCA 72 bp | GATGATGGAGAAAAGAATCAGCAGTGTTTAGGCTGCTaGCTGCAAGACGTAGGAGGTAGAAAGGTGGATGTG | + |
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Preference number: 3 (lower is better) Translates to: DDGEKNQQCLGC*LQDVGGRKVDV Trigger: CACATCCACCTTTCTACCTCCTACGTCTTGCAGCCAGCAGCCTAAACACTGCTGATTCTTTTCTCCATCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR GCA 72 bp | ATGGATGATGGAGAAAAGAATCAGCAGTGTTTAGGCTaGTGGCTGCAAGACGTAGGAGGTAGAAAGGTGGAT | + |
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Preference number: 3 (lower is better) Translates to: MDDGEKNQQCLG*WLQDVGGRKVD Trigger: ATCCACCTTTCTACCTCCTACGTCTTGCAGCCAGCAGCCTAAACACTGCTGATTCTTTTCTCCATCATCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR TCA 72 bp | GTTGTTCAACAGTTCTATAGGTGTTCGTTCTCCATATaGCCTCACCAATGCCCCACAGTGCCTGAACTTACT | + |
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Preference number: 3 (lower is better) Translates to: VVQQFYRCSFSI*PHQCPTVPELT Trigger: AGTAAGTTCAGGCACTGTGGGGCATTGGTGAGGTCATATGGAGAACGAACACCTATAGAACTGTTGAACAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR CCA 72 bp | ACTAAGGTGTTTAACATCTGCCTCCCAACCCCATATTaGTATACACTGCTAAGAAGTGTTCCTTCCCTACAG | + |
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Preference number: 3 (lower is better) Translates to: TKVFNICLPTPY*YTLLRSVPSLQ Trigger: CTGTAGGGAAGGAACACTTCTTAGCAGTGTATACCAATATGGGGTTGGGAGGCAGATGTTAAACACCTTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR GCA 72 bp | GAACCTGAACTCTTGGTGACTCTTGTAAATGCTATGTaGACAATAGAAATGACCTTCTATAGCACAGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: EPELLVTLVNAM*TIEMTFYSTEC Trigger: GCACTCTGTGCTATAGAAGGTCATTTCTATTGTGCACATAGCATTTACAAGAGTCACCAAGAGTTCAGGTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR GCA 72 bp | TTTGACTACCTCTGTGTAACTAAGGTGTTTAACATCTaGCTCCCAACCCCATATTGGTATACACTGCTAAGA | + |
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Preference number: 3 (lower is better) Translates to: FDYLCVTKVFNI*LPTPYWYTLLR Trigger: TCTTAGCAGTGTATACCAATATGGGGTTGGGAGGCAGATGTTAAACACCTTAGTTACACAGAGGTAGTCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR TCA 72 bp | CAAAGTGTAACTGATAAGAATGTGGTGATGTCTGTTTaGAAAGCCAACTTCATCAGCATAGTACAAGCTGCG | + |
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Preference number: 3 (lower is better) Translates to: QSVTDKNVVMSV*KANFISIVQAA Trigger: CGCAGCTTGTACTATGCTGATGAAGTTGGCTTTTCAAACAGACATCACCACATTCTTATCAGTTACACTTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| CDS-3UTR TCA 90 bp | CCATGCCAGCAAGTGTCAACCCCTCTCACAGAGCAACGTGTCTGCTTCCACCCTCATCCTCTGACTGGCTaGTGCGCTGCAGCCGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: PCQQVSTPLTEQRVCFHPHPLTG*CAAAAG Trigger: ACCTGCGGCTGCAGCGCATCAGCCAGTCAGAGGATG...AGGGTGGAAGCAGACACGTTGCTCTGTGAGAGGGGTTGACACTTGCTGGCATGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| CDS-3UTR TCA 90 bp | GCAGAGGACCAGAGCAGTTTCTGCAAAGCCTGGGCTGAAGGGGTGTACTGGGCAGCTCTCCTCATCCTCTaGCTGGCTGATGCGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: AEDQSSFCKAWAEGVYWAALLIL*LADALQ Trigger: CTGCAGCGCATCAGCCAGTCAGAGGATGAGGAGAGC...TGCCCAGTACACCCCTTCAGCCCAGGCTTTGCAGAAACTGCTCTGGTCCTCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| CDS-3UTR GCA 90 bp | AGTGCATGCGATGACAAAGCCCGAGGAGACCATGCCAGCAAGTGTCAACCCCTCCGCCATCACCCACGATaGTCTCCTCATCCTCTGACT | + |
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Preference number: 4 (lower is better) Translates to: SACDDKARGDHASKCQPLRHHPR*SPHPLT Trigger: AGTCAGAGGATGAGGAGAGCATCGTGGGTGATGGCG...GAGGGGTTGACACTTGCTGGCATGGTCTCCTCGGGCTTTGTCATCGCATGCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| CDS-3UTR CCA 90 bp | CTGCTCCCAGGACTAACACACATCCAAGAACTCCTTAGCAGCCTCTGTCCATGGTCCTCATCCTCTGACTaGCTGATGCGCTGCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: LLPGLTHIQELLSSLCPWSSSSD*LMRCSR Trigger: GCGGCTGCAGCGCATCAGCCAGTCAGAGGATGAGGA...CCATGGACAGAGGCTGCTAAGGAGTTCTTGGATGTGTGTTAGTCCTGGGAGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| CDS-3UTR GCA 90 bp | CCATATGACCTCACCAATGCCCCACAGTGCCTGAACTTACTCGTCCCTCTCTGGCGCCATCACCCACGATaGTCTCCTCATCCTCTGACT | + |
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Preference number: 4 (lower is better) Translates to: PYDLTNAPQCLNLLVPLWRHHPR*SPHPLT Trigger: AGTCAGAGGATGAGGAGAGCATCGTGGGTGATGGCG...CCAGAGAGGGACGAGTAAGTTCAGGCACTGTGGGGCATTGGTGAGGTCATATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| CDS-3UTR CCA 90 bp | GCAGAGGACCAGAGCAGTTTCTGCAAAGCCTGGGCTGAAGGGGTGTACTGGGCATGGCGGTCATCAACTTaGCCTTTCTTTCCACACATG | + |
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Preference number: 4 (lower is better) Translates to: AEDQSSFCKAWAEGVYWAWRSST*PFFPHM Trigger: CATGTGTGGAAAGAAAGGCCAAGTTGATGACCGCCA...TGCCCAGTACACCCCTTCAGCCCAGGCTTTGCAGAAACTGCTCTGGTCCTCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| 3UTR CAA 72 bp | ACTTACTCGTCCCTCTCTGGATGGACTGACTCAAACTaGAAAGACCCCCTGGCAACAGGGGGTGATAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: TYSSLSGWTDSN*KDPLATGGDRK Trigger: CTTCCTATCACCCCCTGTTGCCAGGGGGTCTTTCAAGTTTGAGTCAGTCCATCCAGAGAGGGACGAGTAAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| CDS-3UTR CCA 90 bp | AGGCTTAAGCACGTGCTTCTGGGCCTATTTACAGTTCACAGGTTGGTTAGTTCATCCTCATCCTCTGACTaGCTGATGCGCTGCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: RLKHVLLGLFTVHRLVSSSSSSD*LMRCSR Trigger: GCGGCTGCAGCGCATCAGCCAGTCAGAGGATGAGGA...TGAACTAACCAACCTGTGAACTGTAAATAGGCCCAGAAGCACGTGCTTAAGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| CDS-3UTR TCA 90 bp | CTTCTGGGCCTATTTACAGTTCACAGGTTGGTTAGTTCACGCATTACAGTAGTACATCCTCTGACTGGCTaGTGCGCTGCAGCCGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: LLGLFTVHRLVSSRITVVHPLTG*CAAAAG Trigger: ACCTGCGGCTGCAGCGCATCAGCCAGTCAGAGGATG...TACTACTGTAATGCGTGAACTAACCAACCTGTGAACTGTAAATAGGCCCAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| CDS-3UTR TCA 90 bp | AATCAGCAAAAAGGCTTAAGCACGTGCTTCTGGGCCTATTTACAGTTCACAGGTGCTCTCCTCATCCTCTaGCTGGCTGATGCGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: NQQKGLSTCFWAYLQFTGALLIL*LADALQ Trigger: CTGCAGCGCATCAGCCAGTCAGAGGATGAGGAGAGC...ACCTGTGAACTGTAAATAGGCCCAGAAGCACGTGCTTAAGCCTTTTTGCTGATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| CDS-3UTR CCA 90 bp | AGGCTTAAGCACGTGCTTCTGGGCCTATTTACAGTTCACAGGTTGGTTAGTTCATGGCGGTCATCAACTTaGCCTTTCTTTCCACACATG | + |
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Preference number: 4 (lower is better) Translates to: RLKHVLLGLFTVHRLVSSWRSST*PFFPHM Trigger: CATGTGTGGAAAGAAAGGCCAAGTTGATGACCGCCA...TGAACTAACCAACCTGTGAACTGTAAATAGGCCCAGAAGCACGTGCTTAAGCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR CAA 72 bp | AAGCACGTGCTTCTGGGCCTATTTACAGTTCACAGGTaGGTTAGTTCACGCATTACAGTAGTAGCTCCATCA | + |
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Preference number: 4 (lower is better) Translates to: KHVLLGLFTVHR*VSSRITVVAPS Trigger: TGATGGAGCTACTACTGTAATGCGTGAACTAACCAACCTGTGAACTGTAAATAGGCCCAGAAGCACGTGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| 3UTR CAA 72 bp | AACCAGCTCAAATTTCGGTGTAGATCCAAGCTGGCCTaGGATCCATGGATGATGGAGAAAAGAATCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: NQLKFRCRSKLA*DPWMMEKRISS Trigger: ACTGCTGATTCTTTTCTCCATCATCCATGGATCCAAGGCCAGCTTGGATCTACACCGAAATTTGAGCTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| CDS TCA 90 bp | GGGCTCCTTTGTCTCGCCATCACCCACGATGCTCTCCTCATCCTCTaGCTGGCTGATGCGCTGCAGCCGCAGGTAGCACCAGCAGCCCAG | + |
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Preference number: 5 (lower is better) Translates to: GLLCLAITHDALLIL*LADALQPQVAPAAQ Trigger: CTGGGCTGCTGGTGCTACCTGCGGCTGCAGCGCATCAGCCAGTCAGAGGATGAGGAGAGCATCGTGGGTGATGGCGAGACAAAGGAGCCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| CDS TCA 90 bp | TTGTCTCGCCATCACCCACGATGCTCTCCTCATCCTCTGACTGGCTaGTGCGCTGCAGCCGCAGGTAGCACCAGCAGCCCAGGATCAAGG | + |
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Preference number: 5 (lower is better) Translates to: LSRHHPRCSPHPLTG*CAAAAGSTSSPGSR Trigger: CCTTGATCCTGGGCTGCTGGTGCTACCTGCGGCTGCAGCGCATCAGCCAGTCAGAGGATGAGGAGAGCATCGTGGGTGATGGCGAGACAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| CDS-3UTR CAA 90 bp | AGGTCTCATCCTTCACAGGCTTCCAAGCAAGCGCAACAGCTTCCTTGCAGTGACTTGGCGGTCATCAACTaGGCCTTTCTTTCCACACAT | + |
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Preference number: 5 (lower is better) Translates to: RSHPSQASKQAQQLPCSDLAVIN*AFLSTH Trigger: ATGTGTGGAAAGAAAGGCCAAGTTGATGACCGCCAA...GTCACTGCAAGGAAGCTGTTGCGCTTGCTTGGAAGCCTGTGAAGGATGAGACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089011.6 |
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| CDS-3UTR CAA 90 bp | AGGTTGGTTAGTTCACGCATTACAGTAGTAGCTCCATCAAAAACAGGCTCAGCTTTGGCGGTCATCAACTaGGCCTTTCTTTCCACACAT | + |
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Preference number: 5 (lower is better) Translates to: RLVSSRITVVAPSKTGSALAVIN*AFLSTH Trigger: ATGTGTGGAAAGAAAGGCCAAGTTGATGACCGCCAA...AGCTGAGCCTGTTTTTGATGGAGCTACTACTGTAATGCGTGAACTAACCAACCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| CDS CAA 72 bp | CAGCCATGCACTTCTGGGCTGTTGGCGGTCATCAACTaGGCCTTTCTTTCCACACATGGCCCCTTAGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: QPCTSGLLAVIN*AFLSTHGPLAE Trigger: CTCTGCTAAGGGGCCATGTGTGGAAAGAAAGGCCAAGTTGATGACCGCCAACAGCCCAGAAGTGCATGGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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| CDS GCA 72 bp | GCCTTTCTTTCCACACATGGCCCCTTAGCAGAGTACTaGACCAGTAGAAAGGGCTCCTTTGTCTCGCCATCA | + |
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Preference number: 6 (lower is better) Translates to: AFLSTHGPLAEY*TSRKGSFVSPS Trigger: TGATGGCGAGACAAAGGAGCCCTTTCTACTGGTGCAGTACTCTGCTAAGGGGCCATGTGTGGAAAGAAAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089011.6 ENSMUST00000228962.2 |
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